<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:55:38"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263652" ref_strand="+" ref_description="SGN-E263652 [cLEG-60-E13]">
      <seq>gctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatgggccctcctgaatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaagagaaggcgcctcacaccctttgctgatacaagcaacccaattatagcacaggctgctttcctctctgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2132" stop="440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1832" g_stop="1447" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="745" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="758" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E263652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1832" e_stop="1447"/>
          <exon e_start="1116" e_stop="745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</genome_strand>
        <mrna_strand>GCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262131" ref_strand="+" ref_description="SGN-E262131 [cLEG-58-O18]">
      <seq>ctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcngtgagcagtttatgggccctccctgatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaaagagaagcgcctcacaccctttgctgatacaagcaacccaattatagcacaggctgctttcctctctgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2131" stop="440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1831" g_stop="1447" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="745" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="757" r_length="372" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E262131" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1831" e_stop="1447"/>
          <exon e_start="1116" e_stop="745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCT-AAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</genome_strand>
        <mrna_strand>CTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCNGTGAGCAGTTTATGGGCCCTCCCTGATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAAGAGAA-GCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212165" ref_strand="+" ref_description="SGN-E212165 [cLEC-75-H24]">
      <seq>tcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatgggccctcctgaatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaagagaaggcgcctcacaccctttgctgatacnagcaacccaattatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2134" stop="449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1834" g_stop="1447" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="749" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="756" r_length="368" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E212165" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1834" e_stop="1447"/>
          <exon e_start="1116" e_stop="749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGC</genome_strand>
        <mrna_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACNAGCAACCCAATTATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739944" ref_strand="+" ref_description="SGN-E739944 [LC19BG12]">
      <seq>cgtttcatctcccaaatgccttgagattacacttgtctaaattctaacgcttcaacatgcccgaatcaggcgaaatcaagtcacaggcagctaaatctgaccctcaaactacctctccgccaccgtcgcagcaacctcaaacggctgctttgccactaaagcgtccccaacaactggaatcgtccccaaacccaacaactccttcagtcaccgatcccaaagacgtcactcccaccactatctcctcccgtattactgaacctgatttcatctatattcccagttattcccgttggttttcatggaatagcattcatgaatgtgaggttcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatggggcctcctgaatctgcagaaatggatagtgaatccaagtctgaaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2573" stop="511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2273" g_stop="1983" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1982" i_stop="1872" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1871" g_stop="1447" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="716" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="978" i_length="469">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="977" g_stop="811" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="883" r_length="167" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E739944" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2273" e_stop="1983"/>
          <exon e_start="1871" e_stop="1447"/>
          <exon e_start="977" e_stop="811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTCATCTCCCAAATGCCTTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATG</genome_strand>
        <mrna_strand>CGTTTCATCTCCCAAATGCCTTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCC...............................................................................................................GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGGCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAAGTCTGAAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700562" ref_strand="+" ref_description="SGN-E700562 [FA13BH08]">
      <seq>gtttcatctcccaaatgccttgagattacacttgtctaaattctaacgcttcaacatgcccgaatcaggcgaaatcaagtcacaggcagctaaatctgaccctcaaactacctctccgccaccgtcgcagcaacctcaaacggctgctttgccactaaagcgtccccaacaactggaatcgtccccaaacccaacaactccttcagtcaccgatcccaaagacgtcactcccaccactatctcctcccgtattactgaacctgatttcatctatattcccagttattcccgttggttttcatggaatagcattcatgaatgtgaggttcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2572" stop="648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2272" g_stop="1983" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1982" i_stop="1872" i_length="111">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1871" g_stop="1447" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="715" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1116" g_stop="948" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="884" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E700562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2272" e_stop="1983"/>
          <exon e_start="1871" e_stop="1447"/>
          <exon e_start="1116" e_stop="948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATCTCCCAAATGCCTTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGA</genome_strand>
        <mrna_strand>GTTTCATCTCCCAAATGCCTTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCC...............................................................................................................GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468150" ref_strand="+" ref_description="SGN-E468150 [cSTB-2-D10]">
      <seq>gattcgtatagtcacttgattaattgatgtttgggtgttcttcttttaagttggttttcatggaatagcattcatgaatgtgaggttcgctttcttcctgaattttttgatggaaggtcgccttctaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtgggctcaattcgtagggttttcgatttctcagagacatggggtttgattaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtctaagtcaacgtctgcctcagctccgcaaaatgccgacgctaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcgtgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagtcggcgtgaataattcagagcttcggcgagttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2185" stop="650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1871" g_stop="1447" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="474" r_length="425" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="950" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="641" r_length="167" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E468150" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1871" e_stop="1447"/>
          <exon e_start="1116" e_stop="950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTG</genome_strand>
        <mrna_strand>GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTTTTTGATGGAAGGTCGCCTTCTAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTGGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATTAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCTAAGTCAACGTCTGCCTCAGCTCCGCAAAATGCCGACGCTAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCGTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTCGGCGTGAATAATTCAGAGCTTCGGCGAGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463734" ref_strand="+" ref_description="SGN-E463734 [cPRO-15-H20]">
      <seq>aaagcgtccccaacaactcgaatcgtccccaaacccaaccaccccttcagtcaccgatcccaaagacgtcactcccaccactatctcctcccgaattactgaacctgatttcatctatattcccagttattcccgttggttttcatggaatagcattcatgaatgtgaggttcgctttcttcctgaattttttgatggaaggtcgccttctaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtgggctcaattcgtagggttttcgatttctcagagacatggggtttgattaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtctaagtcaacgtctgcctcagctccgcaaaatgccgacgctaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagtcggcgtgaataattcagagcttcggcgagttgagattagtgaggaaagttagacagattggactgancaagagactttgcaccttttagaagctcttatgcattatggcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2416" stop="653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2116" g_stop="1983" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1982" i_stop="1872" i_length="111">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1871" g_stop="1447" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="559" r_length="425" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1116" g_stop="953" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="723" r_length="164" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E463734" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2116" e_stop="1983"/>
          <exon e_start="1871" e_stop="1447"/>
          <exon e_start="1116" e_stop="953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGA</genome_strand>
        <mrna_strand>AAAGCGTCCCCAACAACTCGAATCGTCCCCAAACCCAACCACCCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGAATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCC...............................................................................................................GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTTTTTGATGGAAGGTCGCCTTCTAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTGGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATTAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCTAAGTCAACGTCTGCCTCAGCTCCGCAAAATGCCGACGCTAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTCGGCGTGAATAATTCAGAGCTTCGGCGAGTTGAGATTAGTGAGGAAAGTTAGACAGATTGGACTGANCAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271478" ref_strand="+" ref_description="SGN-E271478 [cLEM-5-J20]">
      <seq>gctttcttcctgaattctttgttggaaggtcgccttccaagaaccctaagaggtacgggtactataggaatactattattcgtacattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcacctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2132" stop="679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1832" g_stop="1447" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="979" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="524" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E271478" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1832" e_stop="1447"/>
          <exon e_start="1116" e_stop="979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTA</genome_strand>
        <mrna_strand>GCTTTCTTCCTGAATTCTTTGTTGGAAGGTCGCCTTCCAAGAACCCTAAGAGGTACGGGTACTATAGGAATACTATTATTCGTACATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730648" ref_strand="+" ref_description="SGN-E730648 [LA24DA08]">
      <seq>tcgatttacacttgtctaaattctaacgcttcaacatgcccgaatcaggcgaaatcaagtcacaggcagctaaatctgaccctcaaactacctctccgccaccgtcgcagcaacctcaaacggctgctttgccactaaagcgtccccaacaactggaatcgtccccaaacccaacaactccttcagtcaccgatcccaaagacgtcactcccaccactatctcctcccgtattactgaacctgatttcatctatattcccagttattcccgtaagtcccatctacttttcagcttttcttttcaaatttgcttctgtatttttagggtggaatggatatagatgattcgtgatacttaattagttcttcttcttcttttaggttggttttcatggaatagcattcatgaatgtgaggttcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgccatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2549" stop="774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2253" g_stop="1447" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="1074" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="849" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E730648" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2253" e_stop="1447"/>
          <exon e_start="1116" e_stop="1074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATA</genome_strand>
        <mrna_strand>TCGA-TTTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCCATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550245" ref_strand="+" ref_description="SGN-E550245 [TUS-5-O19](-)">
      <seq>tacataagattgcaagtatgaagttgacagtatcattatgcaactgttttttatttttaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcaatgtctgagtcgctcctgatgattgagtgaggaaacatggaagttgcggattgcacttccttcaacatcatgtatctaggcccttgcattctgctggtttcaggatcactggcagagagtcatgcatttgagggatactggaataggtttctggctccctccttgtagcaataaactttgtaaaaaattcacatcagaatcaacctgtgattcagttatagtcaaaaactcccagaatatgcttttgggtgtgtagatagtcattgtcttgcgtgctggtgcaccatgcaccgtgtttaaaagtcttgtgcataaaaaacaaacaagctttagtcttaaacttgagattcattctgtaatttggatgttttattgatgattcttgaagcaagaagattcagttattatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="4863" stop="2478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4563" g_stop="4393" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="266" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3222" g_stop="2778" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="711" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E550245" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4563" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="2778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATTATCACC</genome_strand>
        <mrna_strand>TACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTG-TTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGATTCAGTTATTATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554307" ref_strand="-" ref_description="SGN-E554307 [cTSC-3-O1]">
      <seq>tcagattcttcagtttggtgggcccggttcaaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcaatgtctgagtcgctcctgatgattgagtgaggaaacatggaagttgcggattgcacttccttcaacatcatgtatctaggcccttgcattctgctggtttcaggatcactggcagagagtcatgcatttgagggatactggaataggtttctggctccctccttgtagcaataaactttgtaaaaaattcacatcagaatcaacctgtgattcagttatagtcaaaaactcccagaatatgcttttgggtgtgtagatagtcattgtcttgcgtgctggtgcaccatgcaccgtgtttaaaagtcttgtgcataaaaaacaaacaagctttagtcttaaacttgagattcattctgtaatttggatgttttattgatgattcttgaagcaagaagcttcagttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5223" stop="2484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4923" g_stop="4841" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4502" g_stop="4393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="193" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="289" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3222" g_stop="2784" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="728" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E554307" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4923" e_stop="4841"/>
          <exon e_start="4502" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="2784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATT</genome_strand>
        <mrna_strand>TCAGATTCTTCAGTTTGGTGGGCCCGGTTCAAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG..................................................................................................................................................................................................................................................................................................................................................GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389686" ref_strand="+" ref_description="SGN-E389686 [TUS-4-O19](-)">
      <seq>agtatgaagttgacagtatcattatgcaactgttttttatttttaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagcctgncaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcaatgtctgagtcgctcctgatgattgagtgaggaaacatggaagttgcggattgcacttccttcaacatcatgtatctaggcccttgcattctgctggtttcaggatcactggcagagagtcatgcatttgagggatactggaataggtttctggctccctccttgtagcaataaactttgtaaaaaattcacatcagaatcaacctgtgattcagttatagtcaaaaactcccagaatatgcttttgggtgtgtagatagtcattgtcttgcgtgctggtgcaccatgcaccgtgtttaaaagtcttgtgcataaaaaacaaacaagctttagtgttaaacttgagattcattctgtaatttggatgttttattgatgattcttgaagcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="4849" stop="2498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4549" g_stop="4393" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="252" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3222" g_stop="2798" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="677" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E389686" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4549" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="2798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAG</genome_strand>
        <mrna_strand>AGTATGAAGTTGACAGTATCATTATGCAACTG-TTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTGNCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTGTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275195" ref_strand="+" ref_description="SGN-E275195 [cLEN-9-P8]">
      <seq>gttaatgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcaatgtctgagtcgctcctgatgattgagtgaggaaacatggaagttgcggattgcacttccttcaacatcatgtatctaggcccttgcattctgctggtttcaggatcactggcagagagtcatgcatttgagggatactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5318" stop="2749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5018" g_stop="4841" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4502" g_stop="4393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="288" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="384" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3222" g_stop="3049" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="558" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E275195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5018" e_stop="4841"/>
          <exon e_start="4502" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="3049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGG</genome_strand>
        <mrna_strand>GTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG..................................................................................................................................................................................................................................................................................................................................................GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549988" ref_strand="+" ref_description="SGN-E549988 [TUS-5-O19]">
      <seq>aatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggcagatttcttttatttgtatcttatatatgcatgcatggtagccttgcatatcatcttatcattgacattaatctgcattccaagtttatcaagatgtctgacatctagaaaaaagtagtcccccacaaagataggggtaaggggctgcatataccccacccatcccagaccccacttgtggtatcacactgggtatgttgttgctgtatgacatgattgacatctagaaaacatgctggaacctcatctacttctgtagcctcagttccaagtcttacataagattgcaagtatgaagttgacagtatcattatgcaactgtttttttatttttaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggctttttatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagagctcaatgtctgagtcgctcctgatgatttgagtgagaaacatggaagttgcggattgcacttccttcacatcatgtatctaggcccttgcattctgctggtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5192" stop="2789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4892" g_stop="4393" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="596" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3222" g_stop="3089" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="729" r_length="133" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E549988" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4892" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="3089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGA-TTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTC</genome_strand>
        <mrna_strand>AATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTTATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTTGAGTGA-GAAACATGGAAGTTGCGGATTGCACTTCCTTC-ACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389945" ref_strand="+" ref_description="SGN-E389945 [TUS-4-O19]">
      <seq>aatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggcagatttcttttatttgtatcttatatatgcatgcatggtagccttgcatatcatcttatcattgacattaatctgcattccaagtttatcaagatgtctgacatctagaaaaaagtagtcccccacaaagataggggtaaggggctgcatataccccacccatcccagaccccacttgtggtatcacactgggtatgttgttgctgtatgacatgattgacatctagaaaacatgctggaacctcatctacttctgtagcctcagttccaagtcttacataagattgcaagtatgaagttgacagtatcattatgcaactgtttttttatttttaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggttataaaaagtcatacccaccatgagaagctcatgtctgagtcgctcctgatgattgagtgaggaaacatggaaagtgcggattgcacttccttcacatcatgtatctaggcccttgcattctgctggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5192" stop="2790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4892" g_stop="4393" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4283" g_stop="4188" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="596" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3222" g_stop="3090" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="728" r_length="132" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E389945" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4892" e_stop="4393"/>
          <exon e_start="4283" e_stop="4188"/>
          <exon e_start="3222" e_stop="3090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGCAGGTATATTCTCTATGCAAATGACCGTATGTTAAAATCATTACATGGCTTGACTTATCCAAAATGAAAAAAGAAGGCATCATTATAGGGCCTCTTTCTTGGCGGGGACCTTCTTTGCCTGATCAAGGATACTGGGTTTGGGCTAACATGTTACTGTGTTTACAAGAACTCCCAAAGATGGTTTTGAATTTTCATTAAATTCGTCATGATAATGTTCCTCGGAAAATGTTTTTTTTTTCAACCTACTATGTGTGGCAGGTATGATTACTGTCTGACAGGTATAATTACACATCAGATGGAGATGACAGATACTTGGCAGTTCTTTCTCGTTGTTGTCTTTATCTTTCTACGTACATAATTTGATTTTTGATGTGTTTTAATAGTAGTCAATGTCGTATCTTCTTATCATATTGATTTTAACAATCTCTTATGGCGTCCAAATAAGTAGTCTCTTTTCATGATTAGTTCAATTAATTTTTTCATTTGGTGCCAGCTTATATTTGCAATACTTAAGTATTTGAATTTGCTTAAAGGTCCTTTATGTGGTAAGCAGTCCCGTTTCAGTGCCATTTGCATGTCATCAATATGAATTGAAGCTGCTGAGGAGAATTAATGAAACTCTGAAATAATCTACTAATTTGATATGCAGCCCTTTAAAAAAAGGAAAAAGACACTAAAAAGTAATTTGGTGTATGTAGATTATGTAGCAAGGTTATCCTTCTCCTAGATATCACATATTAAAAAGCTATCAAACCTTTTCTAGTCTTAACGTCATTTGCGTTGATGCAGGTTATAAAAAGTCATACCCACCATGAG-AGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTT</genome_strand>
        <mrna_strand>AATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATAAAAAGTCATACCCACCATGAGAAGCTC-ATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAAGTGCGGATTGCACTTCCTTC-ACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573975" ref_strand="-" ref_description="SGN-E573975 [33370]">
      <seq>attccaaatttttcaagatgtctgacatctagaaaaaaacagcctcccacaaagataggggtaaggggctgcgtataccccacctaccccagaccccacttgtgggactgggtatgttgttgctgtatgacatctagaaaacatgctggaacctcatctatttctgtagcctcagttccaagtcttgcataagattgcaagtatgaagttggcagtatcatagtgcaactgtttttttatttttaggtgtcggagcgcctgttacaccacagacacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagatttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaggcttttaatctagccttgcaaattattcactttgcattctagaggtactagatttggctttgttttaacctcttttgtttcccttgagtttgtcggtgcttccctacccccttctgcatctttatcgattattctttttttttttttttttgtgtgtgttgttgtgtgggtggttaagttcaattgcatttatgaggtaatatgaggaccaaaacagaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5062" stop="3711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4762" g_stop="4393" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4283" g_stop="4011" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="629" r_length="274" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E573975" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573975" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4762" e_stop="4393"/>
          <exon e_start="4283" e_stop="4011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTT-TTGGGTGTGTATATG-TGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGC</genome_strand>
        <mrna_strand>ATTCCAAATTTTTCAAGATGTCTGACATCTAGAAAAAAACAGCCTCCCACAAAGATAGGGGTAAGGGGCTGCGTATACCCCACCTACCCCAGACCCCACTTGTGG-----GACTGGGTATGTTGTTGC----TG---T-A-TGACATCTAGAAAACATGCTGGAACCTCATCTATTTCTGTAGCCTCAGTTCCAAGTCTTGCATAAGATTGCAAGTATGAAGTTGGCAGTATCATAGTGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGACACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGA-TTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCGGTGCTTCCCTA-CCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTTTTTTTTGTGTGTGTTGTTGTGTGGGTGGTTAAGTTCAATTGCATTTATGAGGTAATATGAGGACCAAAACAGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391597" ref_strand="+" ref_description="SGN-E391597 [TUS-16-C10]">
      <seq>caaattgtaatttggcttcgttagggcgacctcgtccttctgtgcaatttggacgtctgaggtcaccgactccatttccagcagggctaccagctgctcggggtgcttatgctggaagttttggctaccagcaaccggtttcttatggctaccagcaaggcttgatgtattctccttatgggtatgcgacatatggtacggattacgtttaccctcagggtgtttacaatccttatggaggtcaacagtaccttcctatatatggtgtacctggaactgttaatgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgctacttgagaggcaagcttttaatctagccttgcaaattattcactttgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="7596" stop="3892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7296" g_stop="7246" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5871" g_stop="5742" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="181" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="218" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5078" g_stop="4841" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="456" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4502" g_stop="4393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="566" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4283" g_stop="4192" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="658" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E391597" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7296" e_stop="7246"/>
          <exon e_start="5871" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4841"/>
          <exon e_start="4502" e_stop="4393"/>
          <exon e_start="4283" e_stop="4192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTGGTATTGTAGCTTAATTTGGTTGAATGCTCTATCGTATTTCTAGAACAATAATAATGGTGTTGGATCATGGAGTTGCCTTTGCATACCTTGGGAGTCTGATGAGCTCTATATTATATGAAGCTTTACTGGATAGCTTGTTCTCCCTTCATTTTCAATTGTATTAAGCTTGTAGATTGCTTTTAATTTGTGCACATTTGCATGCACTCCCAGCTAATACAAGACAATGTATGATCCATCTTAAGCTATGAGCTATCATTGGTGGAGTTTTTTTTTTTTGGATGACCGTGGTGTCCGGGCCAGCTTTCGTGCACCTTGACTAAATCCACGGGATACCTGTTATCTCCCACCAGCAACAACATTGGTGGAGATATAATTGAGATGGTGAAATAGAAAATTGAGGGAGAAAGGTAAGAAAATGCATTTAAGTTTTTACAAGTAAAAAATAATTTGAGATGATAAGCCTTAGGATTGATACACAGTGGTGGAATGACGACAGTAGGAGGAGTAATAAGATGCTAAGATCTGGAAAATAGAGTTGAAGTTCTGTATTGTGATAATCTCTCATCAAACTGAAGTAGACAATGCATTAAACATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTGAGATCTCAGATGTTCAGCTTAAGATAATGACACTTAGCCATTTTATACCTTTTCAGGGCACATCCTACCCTGATAAAAGGGAAAGAACTGAAAGGAAAAAGTATGCTCGTTCTTTGAAGTGCATTAGCTTACTTCCACTTTATTTGGTACAGGACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCT</genome_strand>
        <mrna_strand>CAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTACGGATTACGTTTACCCTCAG...................................................................................................................................GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG..................................................................................................................................................................................................................................................................................................................................................GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAAGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261090" ref_strand="-" ref_description="SGN-E261090 [cLEG-65-A4]">
      <seq>tatggctaccagcaagcctggatgtattctcattatgggtatgcgacatatggtacggattacgtttaccgtcagtgtgtttacaatcgtgatgacggtcaacagtacgttcctatatatggtgtaccgggaactgttaatgcaacaatgtatcattacggccagttaagtcaggctgttcttggaagtcacatgttataagacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaagtattcaagcaccatatcaaacaggtgtcggagcgcttgttactccacagccacagtttatagtacgtagtcattctcttcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagcagtattgttacttgagaggcaggcttttaatctagccttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="6079" stop="3913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5779" g_stop="5742" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="75" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5078" g_stop="4841" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="314" r_length="239" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4502" g_stop="4393" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="424" r_length="110" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4283" g_stop="4213" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="495" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E261090" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261090" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="5779" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4841"/>
          <exon e_start="4502" e_stop="4393"/>
          <exon e_start="4283" e_stop="4213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACA-GTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGC</genome_strand>
        <mrna_strand>TATGGCTACCAGCAAGCCTGGATGTATTCTCATTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTACGGATTACGTTTACCGTCAG...................................................................................................................................TGTGTTTACAATCGTGATGACGGTCAACAGTACGTTCCTATATATGGTGTACCGGGAACTGTTAATGCAACAATGTATCATTACGGCCAGTTAAGTCAGGCTGTTCTTGGAAGTCACATGTTATAAGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAAGTATTCAAGCACCATATCAAACAG..................................................................................................................................................................................................................................................................................................................................................GTGTCGGAGCGCTTGTTACTCCACAGCCACAGTTTATAGTACGTAGTCATTCTCTTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGTTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228526" ref_strand="+" ref_description="SGN-E228526 [cLED-3-L12]">
      <seq>atgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggcagatttcttttatttgtatcttatatatgcatgcatggtagccttgcatatcatcttatcattgacattaatctgcattccaagtttatcaagatgtctgacatctagaaaaaagtagtcccccacaaagataggggtaaggggctgcatataccccacccatcccagaccccacttgtggtatcacactgggtatgttgttgctgtatgacatgattgacatctagaaaacatgctggaacctcatctacttctgtagcctcagttccaagtcttacataagattgcaagtatgaagttgacagtatcattatgcaactgtttttttatttttaggtgtcggagcgcctgttacaccacagccacaggttatactacctactcattctcctcaatttatgcaaggtagcggttctgaccaaaatgcagggtgagattttatcaaggtactagattgcagcaggactaacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5191" stop="3954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4891" g_stop="4393" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4283" g_stop="4254" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="529" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E228526" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4891" e_stop="4393"/>
          <exon e_start="4283" e_stop="4254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAGGTACGTTGTAATTCAGACCCAACTGATGAAATAGCCGCGACATATTTGCTTCTGCAAGTTGCAACCACAATTTATCTGTTGATGTTCGTGTTCTACTTTTGACCTTTAGGTACTAGATTGCAGCAGGACTAACAGCAGC</genome_strand>
        <mrna_strand>ATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGGTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG.............................................................................................................GTACTAGATTGCAGCAGGACTAACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205134" ref_strand="+" ref_description="SGN-E205134 [cLEC-16-I12]">
      <seq>aaattgtaatttggcttcgttagggcgacctcgtccttctgtgcaatttggacgtctgaggtcaccgactccatttccagcagggctaccagctgctcggggtgcttatgctggaagttttggctaccagcaaccggtttcttatggctaccagcaaggcttgatgtattctccttatgggtatgcgacatatggtacggattacgtttaccctcagggtgtttacaatccttatggaggtcaacagtaccttcctatatatggtgtacctggaactgttaatgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggtgtcggagcgcctgttacaccacagccacagtttatactacctactcattctcctcaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="7595" stop="4140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7295" g_stop="7246" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5871" g_stop="5742" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="180" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="217" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5078" g_stop="4841" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="455" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="4502" g_stop="4440" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="518" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E205134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7295" e_stop="7246"/>
          <exon e_start="5871" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4841"/>
          <exon e_start="4502" e_stop="4440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTGGTATTGTAGCTTAATTTGGTTGAATGCTCTATCGTATTTCTAGAACAATAATAATGGTGTTGGATCATGGAGTTGCCTTTGCATACCTTGGGAGTCTGATGAGCTCTATATTATATGAAGCTTTACTGGATAGCTTGTTCTCCCTTCATTTTCAATTGTATTAAGCTTGTAGATTGCTTTTAATTTGTGCACATTTGCATGCACTCCCAGCTAATACAAGACAATGTATGATCCATCTTAAGCTATGAGCTATCATTGGTGGAGTTTTTTTTTTTTGGATGACCGTGGTGTCCGGGCCAGCTTTCGTGCACCTTGACTAAATCCACGGGATACCTGTTATCTCCCACCAGCAACAACATTGGTGGAGATATAATTGAGATGGTGAAATAGAAAATTGAGGGAGAAAGGTAAGAAAATGCATTTAAGTTTTTACAAGTAAAAAATAATTTGAGATGATAAGCCTTAGGATTGATACACAGTGGTGGAATGACGACAGTAGGAGGAGTAATAAGATGCTAAGATCTGGAAAATAGAGTTGAAGTTCTGTATTGTGATAATCTCTCATCAAACTGAAGTAGACAATGCATTAAACATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTGAGATCTCAGATGTTCAGCTTAAGATAATGACACTTAGCCATTTTATACCTTTTCAGGGCACATCCTACCCTGATAAAAGGGAAAGAACTGAAAGGAAAAAGTATGCTCGTTCTTTGAAGTGCATTAGCTTACTTCCACTTTATTTGGTACAGGACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTA</genome_strand>
        <mrna_strand>AAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTACGGATTACGTTTACCCTCAG...................................................................................................................................GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG..................................................................................................................................................................................................................................................................................................................................................GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584429" ref_strand="+" ref_description="SGN-E584429 [10255]">
      <seq>atggtgcggattacgtttaccctcaggttagtagcactgcataaatggagacattacaatacatccctttctttttgctgcagtaaaaaggttcaagtgtccttttgtcttgactatgaggactcatttttgatgcatactgtaattttatccgatagggtgtttacaatccttatggaggtcaacagtaccttcctatatatggtgtacctggaactgttaacgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccataccaaacaggcagatctcttttatttgtgtcttatatatgcatgcatggtagccttgcatatcatattatcattgacattaatctgcattccaaatttatcaagatgtctgacatctagaaaaaacagcctcccacaaagataggggtaaggggctgcgtataccccanccaccccagaccccacttgtggggtcacactgggtatgttgttgctgtatgacatctagaaaacatgctggaacctcatctatttctgtagcctcagttccaagtcttgcataagattgcagtatgaagttggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="5535" stop="4234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5235" g_stop="4534" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E584429" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E584429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5235" e_stop="4534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTT-AAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAG</genome_strand>
        <mrna_strand>ATGGTGCGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCTTTCTTTTTGCTGCAGTAAAAAGGTTCAAGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAACGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATACCAAACAGGCAGATCTCTTTTATTTGTGTCTTATATATGCATGCATGGTAGCCTTGCATATCATATTATCATTGACATTAATCTGCATTCCAAATTTATCAAGATGTCTGACATCTAGAAAAAA-CAGCCTCCCACAAAGATAGGGGTAAGGGGCTGCGTATACCCCANCCACCCCAGACCCCACTTGTGGGGTCACACTGGGTATGTTGTTGC----TG---T-A-TGACATCTAGAAAACATGCTGGAACCTCATCTATTTCTGTAGCCTCAGTTCCAAGTCTTGCATAAGATTGC-AGTATGAAGTTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324009" ref_strand="+" ref_description="SGN-E324009 [cTOC-3-N21]">
      <seq>cggtttcttatggctaccagcaaggcttgatgtattctccttatgggtatgcgacatatggtacggattacgtttaccctcagggtgtttacaatccttatggaggtcaacagtaccttcctatatatggtgtacctggaactgttaatgcaacaatgtatccttacggccagctaagtcaggctgttcctggaagtcacagttatacgacattgcagggttatgcagtgccaggacatcagattcttcagtttggtgggcccggtgtcaatgcaatgacagcttcatccattccaactattcaagcaccatatcaaacaggcagatttcttttatttgtatcttatatatgcatgcatggtagccttgcatatcatcttatcattgacattaatctgcattccaagtttatcaagatgtctgacatctagaaaaaagtagtcccccacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="6087" stop="4410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5787" g_stop="5742" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="83" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5078" g_stop="4710" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="452" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E324009" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5787" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAA</genome_strand>
        <mrna_strand>CGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTACGGATTACGTTTACCCTCAG...................................................................................................................................GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480277" ref_strand="+" ref_description="SGN-E480277 [cSTD-13-K6]">
      <seq>ttctgttttctggtctacttagttctcctgtatcttcttaattaaattgggtagtgggttatggcgtatcaacagcaaccaccagctcagggtccaggttcctctgctgctggtagtggagttccattctttaattctccttttggggacaccaccttcactaaggtctttgttggaggtcttgcttgggaaactcagagtgacaccctcagacgattctttgagcagtttggtgaaatcctcgaggctgttgtcatcactgataaaaatactggccgatccaaaggctatggctttgtgactttccgggaccctgagtctacaaggagggcatgtgctgatcctgctccaattatcgatgggagacgggcaaattgtaatttggcttcgttagggcgacctcggccttctgtgcaatttggacgtctgaggtcatcgactccatttccagcagggctacccgctgctcggggtgcttatgctggaagttttggctaccagcaaccggtttcttatggctaccaacaaggcttgatgtattctccttatgggtatgcgacatatggtgcggattatgtttaccctcanggtgtttacaatccttatggangtcaacagtaccttcctatatatggtgtacctggaactgttaacgcaacaatgtatcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="8274" stop="4696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7974" g_stop="7677" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7369" g_stop="7246" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="421" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374">
            <donor d_prob="0.425" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5871" g_stop="5742" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="551" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495">
            <donor d_prob="0.573" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5246" g_stop="5210" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="588" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131">
            <donor d_prob="0.948" d_score="0.00"/>
            <acceptor a_prob="0.455" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5078" g_stop="4996" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="671" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E480277" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7974" e_stop="7677"/>
          <exon e_start="7369" e_stop="7246"/>
          <exon e_start="5871" e_stop="5742"/>
          <exon e_start="5246" e_stop="5210"/>
          <exon e_start="5078" e_stop="4996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTTCTGGTCTACTTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTTGTGAGTGTCCTTCAATGAATTATAGTACTACTTGTTTACTCAATTTGAAAAGGATGCAGTTTCTTTTTACTATCTTTTGTTTTCTTTCCGTTTTATGGATAAAAAAATGGTTCCTTTTTCAAATTCCATCTTAATCTCCCTTTTTTTTTTTACAACCAGGTGATATAACATCCCTTATTTGCACTGTCTACTGTCTGTCCCTTCTAGTTAAATAATTTATATTGTCTGTCTTTTACTTAGCCTGCATCTATGAATTTGGATAACTGAATGACATAATTTCCGCATGGTATTTTTTTGGAGGGTTTAGGTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTGGTATTGTAGCTTAATTTGGTTGAATGCTCTATCGTATTTCTAGAACAATAATAATGGTGTTGGATCATGGAGTTGCCTTTGCATACCTTGGGAGTCTGATGAGCTCTATATTATATGAAGCTTTACTGGATAGCTTGTTCTCCCTTCATTTTCAATTGTATTAAGCTTGTAGATTGCTTTTAATTTGTGCACATTTGCATGCACTCCCAGCTAATACAAGACAATGTATGATCCATCTTAAGCTATGAGCTATCATTGGTGGAGTTTTTTTTTTTTGGATGACCGTGGTGTCCGGGCCAGCTTTCGTGCACCTTGACTAAATCCACGGGATACCTGTTATCTCCCACCAGCAACAACATTGGTGGAGATATAATTGAGATGGTGAAATAGAAAATTGAGGGAGAAAGGTAAGAAAATGCATTTAAGTTTTTACAAGTAAAAAATAATTTGAGATGATAAGCCTTAGGATTGATACACAGTGGTGGAATGACGACAGTAGGAGGAGTAATAAGATGCTAAGATCTGGAAAATAGAGTTGAAGTTCTGTATTGTGATAATCTCTCATCAAACTGAAGTAGACAATGCATTAAACATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTGAGATCTCAGATGTTCAGCTTAAGATAATGACACTTAGCCATTTTATACCTTTTCAGGGCACATCCTACCCTGATAAAAGGGAAAGAACTGAAAGGAAAAAGTATGCTCGTTCTTTGAAGTGCATTAGCTTACTTCCACTTTATTTGGTACAGGACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGGGTAAGCTGTGTGTCACAGGCATTTATAGACTATGCAAGCACTGATTCATTTATGGGTTATAGTATAATCATAGAGGAAAACATCCAGTGACGAGGAGAAAGGAAGGTTCAATTAGTTAACGTTGGAGCATACTGTCACCTAATTTTTGCTATCGATTCTTGAAATGTCGTTGCATTTAGGATTATAAGTTTGGGGGAGGCCCAAGCTTGAGTCCCTTCATTATTGAATTTCATGAGTTTCTTATTTGCATGCGAACAAGTAGTTCCTCTCTTTTCACTTAGAAACAGGAAAAATTTCATCCTATTCACTGAGAGAGAACCATGTTACTTAATTTGCTGAATTTACTTTAAAAATAGTTAATTTAATTGATAGACCTTAGGACTTCATGTCAATCAGTCATTTTTTTGTACATTTTACCACGTACCTTATTTGTGTGTATTGCATTTAAAAGCACAACTTTTAGAAGATACAGTTACCTCTGTATTACTAATGCAGGTATGCGACATATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTA</genome_strand>
        <mrna_strand>TTCTGTTTTCTGGTCTACTTAGTTCTCCTGTATCTTCTT-AATTAAATTGGGTAGTGGGTTATGGCGTATCAACAGCAACCACCAGCTCAGGGTCCAGGTTCCTCTGCTGCTGGTAGTGGAGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT...................................................................................................................................................................................................................................................................................................................GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGGAGACGGGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGGCCTTCTGTGCAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGAGGTCATCGACTCCATTTCCAGCAGGGCTACCCGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAACAAGGCTTGATGTATTCTCCTTATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGCGACATATGGTGCGGATTATGTTTACCCTCAN...................................................................................................................................GGTGTTTACAATCCTTATGGANGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAACGCAACAATGTATCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205610" ref_strand="+" ref_description="SGN-E205610 [cLEC-21-F7]">
      <seq>caaaggctatggctttgtgactttccgggaccctgagtctacaaggagggcatgtgctgatcctgctccaattatcgatggaagacgagcaaattgtaatttggcttcgttagggcgacctcgtccttctgtgcaatttggacgtctgaggtcaccgactccatttccagcagggctaccagctgctcggggtgcttatgctggaagttttggctaccagcaaccggtttcttatggctaccagcaaggcttgatgtattctccttatgggtatgcgacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="7992" stop="5436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7692" g_stop="7677" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7369" g_stop="7246" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="140" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5871" g_stop="5742" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="270" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E205610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7692" e_stop="7677"/>
          <exon e_start="7369" e_stop="7246"/>
          <exon e_start="5871" e_stop="5742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGCTATGGCTTTGTGAGTGTCCTTCAATGAATTATAGTACTACTTGTTTACTCAATTTGAAAAGGATGCAGTTTCTTTTTACTATCTTTTGTTTTCTTTCCGTTTTATGGATAAAAAAATGGTTCCTTTTTCAAATTCCATCTTAATCTCCCTTTTTTTTTTTACAACCAGGTGATATAACATCCCTTATTTGCACTGTCTACTGTCTGTCCCTTCTAGTTAAATAATTTATATTGTCTGTCTTTTACTTAGCCTGCATCTATGAATTTGGATAACTGAATGACATAATTTCCGCATGGTATTTTTTTGGAGGGTTTAGGTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTGGTATTGTAGCTTAATTTGGTTGAATGCTCTATCGTATTTCTAGAACAATAATAATGGTGTTGGATCATGGAGTTGCCTTTGCATACCTTGGGAGTCTGATGAGCTCTATATTATATGAAGCTTTACTGGATAGCTTGTTCTCCCTTCATTTTCAATTGTATTAAGCTTGTAGATTGCTTTTAATTTGTGCACATTTGCATGCACTCCCAGCTAATACAAGACAATGTATGATCCATCTTAAGCTATGAGCTATCATTGGTGGAGTTTTTTTTTTTTGGATGACCGTGGTGTCCGGGCCAGCTTTCGTGCACCTTGACTAAATCCACGGGATACCTGTTATCTCCCACCAGCAACAACATTGGTGGAGATATAATTGAGATGGTGAAATAGAAAATTGAGGGAGAAAGGTAAGAAAATGCATTTAAGTTTTTACAAGTAAAAAATAATTTGAGATGATAAGCCTTAGGATTGATACACAGTGGTGGAATGACGACAGTAGGAGGAGTAATAAGATGCTAAGATCTGGAAAATAGAGTTGAAGTTCTGTATTGTGATAATCTCTCATCAAACTGAAGTAGACAATGCATTAAACATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTGAGATCTCAGATGTTCAGCTTAAGATAATGACACTTAGCCATTTTATACCTTTTCAGGGCACATCCTACCCTGATAAAAGGGAAAGAACTGAAAGGAAAAAGTATGCTCGTTCTTTGAAGTGCATTAGCTTACTTCCACTTTATTTGGTACAGGACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG</genome_strand>
        <mrna_strand>CAAAGGCTATGGCTTT...................................................................................................................................................................................................................................................................................................................GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208755" ref_strand="+" ref_description="SGN-E208755 [cLEC-51-O21]">
      <seq>ttacttctcctgtatctacttaaatcaaattggatagtggattatggcgtatcaacagcagccaccagctcaaggttcaggttcctctgctgctggcagtggggttccattctttaattctccttttggggacaccaccttcactaaggtctttgttggaggtcttgcttgggaaactcagagtgacaccctcagacgattctttgagcagtttggtgaaatcctcgaggctgttgtcatcactgataaaaatactggccgatccaaaggctatggctttgtgactttccgggaccctgagtctacaaggagggcatgtgctgatcctgctccaattatcgatggaagacgagcaaattgtaatttggcttcgttagggcgacctcgtccttctgtgcaatttggacgtctgaggtcaccgactccatttccagcagggctaccagctgctcggggtgcttatgctggaagttttggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="8256" stop="5496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7956" g_stop="7677" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7369" g_stop="7246" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="404" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5871" g_stop="5796" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="480" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E208755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7956" e_stop="7677"/>
          <exon e_start="7369" e_stop="7246"/>
          <exon e_start="5871" e_stop="5796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTTGTGAGTGTCCTTCAATGAATTATAGTACTACTTGTTTACTCAATTTGAAAAGGATGCAGTTTCTTTTTACTATCTTTTGTTTTCTTTCCGTTTTATGGATAAAAAAATGGTTCCTTTTTCAAATTCCATCTTAATCTCCCTTTTTTTTTTTACAACCAGGTGATATAACATCCCTTATTTGCACTGTCTACTGTCTGTCCCTTCTAGTTAAATAATTTATATTGTCTGTCTTTTACTTAGCCTGCATCTATGAATTTGGATAACTGAATGACATAATTTCCGCATGGTATTTTTTTGGAGGGTTTAGGTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTGGTATTGTAGCTTAATTTGGTTGAATGCTCTATCGTATTTCTAGAACAATAATAATGGTGTTGGATCATGGAGTTGCCTTTGCATACCTTGGGAGTCTGATGAGCTCTATATTATATGAAGCTTTACTGGATAGCTTGTTCTCCCTTCATTTTCAATTGTATTAAGCTTGTAGATTGCTTTTAATTTGTGCACATTTGCATGCACTCCCAGCTAATACAAGACAATGTATGATCCATCTTAAGCTATGAGCTATCATTGGTGGAGTTTTTTTTTTTTGGATGACCGTGGTGTCCGGGCCAGCTTTCGTGCACCTTGACTAAATCCACGGGATACCTGTTATCTCCCACCAGCAACAACATTGGTGGAGATATAATTGAGATGGTGAAATAGAAAATTGAGGGAGAAAGGTAAGAAAATGCATTTAAGTTTTTACAAGTAAAAAATAATTTGAGATGATAAGCCTTAGGATTGATACACAGTGGTGGAATGACGACAGTAGGAGGAGTAATAAGATGCTAAGATCTGGAAAATAGAGTTGAAGTTCTGTATTGTGATAATCTCTCATCAAACTGAAGTAGACAATGCATTAAACATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTGAGATCTCAGATGTTCAGCTTAAGATAATGACACTTAGCCATTTTATACCTTTTCAGGGCACATCCTACCCTGATAAAAGGGAAAGAACTGAAAGGAAAAAGTATGCTCGTTCTTTGAAGTGCATTAGCTTACTTCCACTTTATTTGGTACAGGACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTA</genome_strand>
        <mrna_strand>TTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT...................................................................................................................................................................................................................................................................................................................GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314552" ref_strand="+" ref_description="SGN-E314552 [cTOA-20-K3]">
      <seq>atgtctgctttttggggattttgtataattttatctttaagagattgtggtacatggtttaaaatgagaaataaagtgatgtgaacaggtctccttgatcagagactgaacatcatgaagtgcatgtaatcactaactgtgcttcagaacactctctagtcttttctcctgaagttacaagaattcatccctcatcacaaagtgacacaatgatcttttccccttcaataatttccttgtttgcgtggctgttttttttgtaacataacaggtgcagtatgttttgacaatcttttggcttggccctatacccatctaccttcttggtggatggcggagatcttctcttcgacttctccaaaattgattgtgtggaaatgaatacattgctagcacacttaatcaattacttatgtgacctttgcacaatcaatgtggagagctgtttccttggcttctcttgaacacattgataatctttgaaactagaagctgaaagttcctttacaggccatttatatgaaaaattgtaaagctgcctgagaattgttgtaaaaacatctataaggatcacctccttttctaaggatcctgcaaatatcgattcatggctggntatgtgtttgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="6953" stop="5724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6653" g_stop="6024" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E314552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6653" e_stop="6024"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTG</genome_strand>
        <mrna_strand>ATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGNTATGTGTTTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487296" ref_strand="+" ref_description="SGN-E487296 [cSTE-25-G23]">
      <seq>gccttttgacctactcctctctttttttccaccctcagttctagggtttccttcttttttttttctcttgatcctttgtgttccgctcttcctcttcctgctcctgctgctctatagctctctccgcaaacacccttttcttgttttgtatatacatgtaccatcttttctgccatttgtagggggttttctgtttataagaggtggggttttcactggatcaactttagtataacgtggatagcttctgttttctggtctacttagttctcctgtatcttcttaattaaattgggtagtgggttatggcgtatcaacagcagccaccagctcagggtccaggttcctctgctgctggtagtggagttccattctttaattctccttttggggacaccaccttcactaaggtctttgttggaggtcttgcttgggaaactcagagtgacaccctcagacgattctttgagcagtttggtgaaattctcgaggctgttgtcatcactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="8526" stop="7412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8226" g_stop="7712" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E487296" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8226" e_stop="7712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTTTGACCTACT-CTCTCTTTTTTTCCACCCACAGTTCTAGGGTTTCCTATTATTATTTTTTTCTCTCTTCATCCTTTGTGTTCCGCTCTTCCTCTTCATCTTCCTGCTGCTGCTCCTATAGCTCTCTCCTTAAACATCCTTTTCTTTTTTTGTGAATACATGTACCATCTTTTCTGCCATTTTAGGGGGGTTTTCTGTGTATAAGAGGTCGGGTTTTCACTGGATCAACTTTAGTATAACGTGAATAGTTTCTGTTTTCTGGTCTACTTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTG</genome_strand>
        <mrna_strand>GCCTTTTGACCTACTCCTCTCTTTTTTTCCACCCTCAGTTCTAGGGTTTCC--TTCTT-TTTTTTT-TCTCTTGATCCTTTGTGTTCCGCTCTTCCTCTTC--C-TGCTCCTGCTGCT-CTATAGCTCTCTCCGCAAACACCCTTTTCTTGTTTTGTATATACATGTACCATCTTTTCTGCCATTTGTAGGGGGTTTTCTGTTTATAAGAGGTGGGGTTTTCACTGGATCAACTTTAGTATAACGTGGATAGCTTCTGTTTTCTGGTCTACTTAGTTCTCCTGTATCTTCTT-AATTAAATTGGGTAGTGGGTTATGGCGTATCAACAGCAGCCACCAGCTCAGGGTCCAGGTTCCTCTGCTGCTGGTAGTGGAGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATTCTCGAGGCTGTTGTCATCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217392" ref_strand="+" ref_description="SGN-E217392 [cLEL-21-G13](-)">
      <seq>cgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcaaaaaagctgcagaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagttacaaacaaaagggctttcttgattgaagaaaagaccctttttttcttgttgtcgtactaaataattgctctgtatgtttttcaagttttcacacttgcaaactagtctggaataaggaggttacactatggtaccttttgagttctatttagttgttttgttttgctccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="10384" stop="8936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10084" g_stop="9938" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9512" g_stop="9229" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="431" r_length="284" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221">
            <donor d_prob="0.615" d_score="0.86"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9007" g_stop="9001" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="438" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="466"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E217392" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10084" e_stop="9938"/>
          <exon e_start="9512" e_stop="9229"/>
          <exon e_start="9007" e_stop="9001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAGGTACAGATTAACTCAACTTATTCAAGTATTTCTATTCCTAAAGCTTTAGTAGCTGGAGTTTCAATGAAGGTGGTTGGCGAAGGTACTTGACGTGTAGAGCGAGCTTTTGTTCAATTCAACATTTGGACAAGCTATTGCCTATAAACTGAACATCAAGACAAATTAAAGAACCTTCCCTAGAGAGAATAGGTACGATAGCACACATTTCTGTTGTGTGACAGAGAACAA</genome_strand>
        <mrna_strand>CGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAAAAAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCCCCAAAAAA.............................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217380" ref_strand="+" ref_description="SGN-E217380 [cLEL-21-E13](-)">
      <seq>agtgaaatcagaagatttagttgccatgctaaaaaaacaatatcccagctgcaactatcctaaacgttttactcatgtgacggaggatggtggttttagttcagaaaagctgcacaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagtttcaaacaaaagggctttttttatttaaaaaaagaccccttttttcttgttgtcgtactaaaaaattgctctgtatgtttttcaagttttcacacttgcaaactagtctggaataaggaggttacactatgggaccttttgagttctatttagctggtttgttttgctccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="10303" stop="8936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="9938" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9512" g_stop="9229" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="350" r_length="284" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221">
            <donor d_prob="0.615" d_score="0.80"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9007" g_stop="9001" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="357" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="385"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E217380" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="9938"/>
          <exon e_start="9512" e_stop="9229"/>
          <exon e_start="9007" e_stop="9001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAGGTACAGATTAACTCAACTTATTCAAGTATTTCTATTCCTAAAGCTTTAGTAGCTGGAGTTTCAATGAAGGTGGTTGGCGAAGGTACTTGACGTGTAGAGCGAGCTTTTGTTCAATTCAACATTTGGACAAGCTATTGCCTATAAACTGAACATCAAGACAAATTAAAGAACCTTCCCTAGAGAGAATAGGTACGATAGCACACATTTCTGTTGTGTGACAGAGAACAA</genome_strand>
        <mrna_strand>AGTGAAATCAGAAGATTTAGTTGCCATGCTAAAAAAACAATATCCCAGCTGCAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTCATGTGACGGAGGATGGTGGTTTTAGTTCAGAAAAGCTGCACAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTTCAAACAAAAGGGCTTTTTTTATTTAAAAAAAGACCCCTTTTTTCTTGTTGTCGTACTAAAAAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGGACCTTTTGAGTTCTATTTAGCTGGTTTGTTTTGCTCCCCAAAAAA.............................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217307" ref_strand="+" ref_description="SGN-E217307 [cLEL-21-G15](-)">
      <seq>agtgaaatcagaagatttagttgccatgctaaaaaaacaatatcccaactacaactatcctaaacgttttactaatgtgacggaggatggtggttttagttcaaaaaaactgcaaaagttgggttggcaatatagggccctggaggaaactctagttgatgcagttgaaagttacaaacaaaagggctttcttgattgaaaaaaaaaccctttttttcttgttgtcggactaaataaatgctctgtatgtttttcaagttttcacacctgcaaactagtctggaataaggaggttaccctatggtaccttttgagttctatttagttgttttgttttgctccccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="10303" stop="8936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="9938" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9512" g_stop="9229" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="350" r_length="284" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221">
            <donor d_prob="0.615" d_score="0.86"/>
            <acceptor a_prob="0.397" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9007" g_stop="9001" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="357" r_length="7" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="385"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E217307" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="9938"/>
          <exon e_start="9512" e_stop="9229"/>
          <exon e_start="9007" e_stop="9001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAGGTACAGATTAACTCAACTTATTCAAGTATTTCTATTCCTAAAGCTTTAGTAGCTGGAGTTTCAATGAAGGTGGTTGGCGAAGGTACTTGACGTGTAGAGCGAGCTTTTGTTCAATTCAACATTTGGACAAGCTATTGCCTATAAACTGAACATCAAGACAAATTAAAGAACCTTCCCTAGAGAGAATAGGTACGATAGCACACATTTCTGTTGTGTGACAGAGAACAA</genome_strand>
        <mrna_strand>AGTGAAATCAGAAGATTTAGTTGCCATGCTAAAAAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTAATGTGACGGAGGATGGTGGTTTTAGTTCAAAAAAACTGCAAAAGTTGGGTTGGCAATATAGGGCCCTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAAAAAAAACCCTTTTTTTCTTGTTGTCGGACTAAATAAATGCTCTGTATGTTTTTCAAGTTTTCACACCTGCAAACTAGTCTGGAATAAGGAGGTTACCCTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCCCCAAAAAA.............................................................................................................................................................................................................................AAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353512" ref_strand="+" ref_description="SGN-E353512 [cTOS-15-I2]">
      <seq>tttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagagaagctgcagaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagttacaaaacaaagggctttcttgattgaagaaaagaccctttttttctttgtgtcgtacttaataattgctctgtatgtttttcaagttttcacacttgcaaactagtctggaataaggagggtacactatgggaaccctttgagttccatttagttggtttggtttgctctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="11576" stop="8935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11276" g_stop="11125" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="342" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9512" g_stop="9229" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="627" r_length="285" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E353512" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11276" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTAT-GGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG</genome_strand>
        <mrna_strand>TTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAAACAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTTGTGTCGTACTTAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGGTACACTATGGGAACCCTTTGAGTTCCATTTAGTTGGTTTGGTTTGCTCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746329" ref_strand="+" ref_description="SGN-E746329 [GI|47104725]">
      <seq>ccgtttagtgtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagagaagctgcagaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagttacaaacaaaagggctttcttgattgaagaaaagaccctttttttcttgttgttgtactaaataattgctctgtatgtttttcaagttttcacacttgcaaactagtctggaataaggaggttacactatggtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13035" stop="8973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12735" g_stop="12590" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="316" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="502" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="665" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="855" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9512" g_stop="9276" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="856" r_stop="1092" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1095" polyA_stop="1117"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E746329" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1092</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12735" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATG</genome_strand>
        <mrna_strand>CCGTTTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTTGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296062" ref_strand="+" ref_description="SGN-E296062 [cLET-24-C11]">
      <seq>tttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagagaagctgcagaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagttacaaacaaaagggctttcttgattgaagaaaagaccctttttttcttgttgttgtactaaataattgctctgtatgtttttcaagttttcacacttgcaaactagtctggaataaggaggttacactatggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="11450" stop="8973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11150" g_stop="11125" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="216" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9512" g_stop="9276" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="453" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="466"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E296062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11150" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATG</genome_strand>
        <mrna_strand>TTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTTGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342243" ref_strand="+" ref_description="SGN-E342243 [cTOF-8-G7]">
      <seq>ttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagagaagctgcagaagttgggttggcaatatanggcactggaggaaactctagttgatgcagttgaaagttacaaacaaaagggctttcttgattgaagaaagaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="11995" stop="9069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11695" g_stop="11550" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="309" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="499" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9512" g_stop="9369" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="642" r_length="143" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E342243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11695" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCC</genome_strand>
        <mrna_strand>TTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATANGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAG-AAAGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731857" ref_strand="+" ref_description="SGN-E731857 [LA28BE09]">
      <seq>ctttgatttgttttcctactaattttagacctcagattcctgagaaatgattcttaatttgcactgcagctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagagaagctgcagaagttgggttggcaatatagggcactggaggaaactctagttgatgcagttgaaagttacaaacaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12876" stop="9094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12576" g_stop="12338" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="425" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="588" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="778" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="9512" g_stop="9394" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="897" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E731857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12576" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGG</genome_strand>
        <mrna_strand>CTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703615" ref_strand="+" ref_description="SGN-E703615 [FA22AA04]">
      <seq>agtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtcaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttcagagaagctgcagaagttgggttggcaatatagggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12987" stop="9138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12687" g_stop="12590" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="268" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="454" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="617" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="807" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9512" g_stop="9438" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="882" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E703615" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12687" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACT</genome_strand>
        <mrna_strand>AGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTCAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699641" ref_strand="+" ref_description="SGN-E699641 [FA10DB06]">
      <seq>cgctttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttttagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13010" stop="9177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12711" g_stop="12590" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="292" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="478" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="641" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="831" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9512" g_stop="9477" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="832" r_stop="867" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E699641" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12711" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
          <exon e_start="9512" e_stop="9477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACCCTTCTACTCAGTTATCTAAAATCTGTTGTGCTAAAGTACCTTCTATTTTACAGTTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTC</genome_strand>
        <mrna_strand>CGCTTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337014" ref_strand="+" ref_description="SGN-E337014 [cTOE-20-L5]">
      <seq>tggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacggtgaatttctctccttttcactttatgcttctttaatgtgaatatagtgtcctatttcctgtgtatggtttaagagttgcaggggaaaaaagcagcttaaggaaattgggacttgtcttatgggtatttcatttcgtatttccagtgtgtttggttaagaatttggtctatttgatcaggtgtattgataaatattcttgtaacaaaccttgcccactagtaatattgtctggttcgggcctaggagcacacaactttaaaattcattgcctagagagattcttgaagaactgttagaccttagtgagcatttctatgccatacaagcctagactcaaatgagatattaatagtggaccgggctctcttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="10412" stop="9266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10112" g_stop="9566" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E337014" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10112" e_stop="9566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACC</genome_strand>
        <mrna_strand>TGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATTAATAGTGGACCGGGCTCTCTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721146" ref_strand="+" ref_description="SGN-E721146 [FC12DF09]">
      <seq>tggcggccaaatcggccgaattgagtgtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13032" stop="9626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12727" g_stop="12590" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="163" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="333" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="519" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="682" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="872" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E721146" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12727" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</genome_strand>
        <mrna_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702964" ref_strand="+" ref_description="SGN-E702964 [FA20AG04]">
      <seq>gtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgttttactgatgtgacggaggatggtggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13026" stop="9626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12726" g_stop="12590" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="307" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="493" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="656" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="846" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E702964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12726" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</genome_strand>
        <mrna_strand>GTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707978" ref_strand="+" ref_description="SGN-E707978 [FA34CA04]">
      <seq>ccatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatcctaaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13014" stop="9638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12715" g_stop="12590" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="296" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="482" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="645" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="835" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E707978" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12715" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</genome_strand>
        <mrna_strand>CCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705886" ref_strand="+" ref_description="SGN-E705886 [FA28BF11]">
      <seq>cgcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgcagtgaaatcagaagatttagttgccatgctaaagaaacaatatcccaactacaactatccctaacgttttactgatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13010" stop="9626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12711" g_stop="12590" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="292" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="478" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="641" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9938" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="831" r_length="190" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E705886" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12711" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG</genome_strand>
        <mrna_strand>CGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCCTAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339416" ref_strand="+" ref_description="SGN-E339416 [cTOF-4-K16]">
      <seq>ttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaagtagatacttgtgcatggctcatgcagtgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13007" stop="9695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12590" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="474" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="637" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="9995" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="769" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E339416" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="9995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATC</genome_strand>
        <mrna_strand>TTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAA-GTAGATACTTGTGCATGGCTCATGCAGTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342218" ref_strand="+" ref_description="SGN-E342218 [cTOF-10-P2]">
      <seq>ttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccacacttgttatagggccaatgttgcagaagacaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagacctgaagctgaaggtagatacttgtgcatggctcatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13007" stop="9704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12590" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="474" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="635" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.307" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="10004" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="758" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E342218" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="10004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGC</genome_strand>
        <mrna_strand>TTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCC-ACACTTGTTATAGGGCCAATGTTGCAGAAGAC-AAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGG-TTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345886" ref_strand="+" ref_description="SGN-E345886 [cTOF-24-K4]">
      <seq>ttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaactcaagtagtttggtactcattaagctgctgaaagaagatacgaagagctggaaaacagaaacggtttttggtagacgtacgtgatttagctgatgctttactgctagtctatgagagaacctgaagctgaagtagatacttgtgcatggctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13007" stop="9705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12707" g_stop="12590" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="288" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="474" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="637" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.307" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="10005" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="758" r_length="121" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E345886" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12707" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="10005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAG-ACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATG</genome_strand>
        <mrna_strand>TTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-GATACGAAGAGCTGGAAAAC-AGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGAACCTGAAGCTGAA-GTAGATACTTGTGCATGGCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729204" ref_strand="+" ref_description="SGN-E729204 [LA20BC03]">
      <seq>gcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacacttgttatagggccaatgttgcagaagacaaaaaaactcaagtagtttggtactcattaagctgctgaaagaaggatacgaagagctggaaaacaagaaacggnttttggtagacgtacgtgatttagctgatgctttactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13015" stop="9755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12715" g_stop="12590" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="296" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="482" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="646" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.307" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="10055" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="719" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E729204" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12715" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="10055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGAC-AAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCT</genome_strand>
        <mrna_strand>GCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAACAAGAAACGGNTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624418" ref_strand="+" ref_description="SGN-E624418 [GI|25140435]">
      <seq>ggaggcatggcgttgatggcggagaaatccagagtgtgtgtaactggcgcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacattgttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaagaaccttgataaagctgctgagaaccttaagctcttcaaggcagacttgctagatcccaactcgcttgctggagccatcaaaggatgcaatggagtatttcatgttgcttgtccagttccttcgggatctgtaccaaatcccgaggtagaacttgttgagcctgcagtgaacggcacacttaatgttctgaaggcatgctctgaagaaaacatcaagagggttgtgtttgtgtcttctgttgctgctgcttctagaccccactggccgaagggccaagtgaaggacgagacttgttggtcggacagtgaatactgcaaagcaactaataactggtactgtttttctaaaacgatggctgagaaagaagcttggtcatatgcaaagcaaggtggacttgatatggtaactgtgctcccatcacttgttatagggccaatgttacagaagacaacaaatgccagtagcttgtttctcattaagctgctgaaagaaggatacgaagagctggaaaacagaaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13018" stop="9796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12719" g_stop="12590" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="300" r_length="170" r_score="0.941"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="483" r_length="183" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="0.92"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11125" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="646" r_length="163" r_score="0.926"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997">
            <donor d_prob="0.996" d_score="0.84"/>
            <acceptor a_prob="0.307" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10127" g_stop="10096" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="677" r_length="31" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E624418" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12719" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11125"/>
          <exon e_start="10127" e_stop="10096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAGGTACCAAGAAACCATAGTTATACTTGACTCTTAAATGTTTCTGCATTATTTCTTCTACTTCTACATTTCTGCTTGTGCGAGTTGCTCATTGGGGAATAATCAGAATTCACTTTCCCCACAAGCTACTTTCTTTGTTTTCCGTGCGAGCATGAACATACATTTAACATTTTGAATTTTGTTAAGTTCTTCCTTATGCATACATTCACTTTATAACCCAAGATGCTTTGGACAACTGCCTGAAGCCCTTCTATTTTTTACTTACTTTGCTCAACTATATGATATGATAGAGAGACGGTGCCAATCTAGGTTATGTGTTATATAGGTTATTTGATAAAAGTTTAGTAGGCCAGTTTATGATAGTTCTGGTTGTAGAAGCATTTCTCAGGTGCTCTTGTTGTCATCCTTCTACTCTAGTGTTTCAAGCATTGCTTTTGCCATGGAGTCTCAAGTGTATTGCCTCGTTAGATAGAGACTTCCTAGCTACTGTGCACCAACAGTTACTAAGCTTTTTGCTTAATTGTAGTAAATGTTAATTTCTGTGTATAACGAGTTGGCCTTTAGTCATTGATATTATAAATAACTGGTTCAGAGTCTAGGAATATATGACCGACCATGCACTAAAATAAAGAAAGTTTCACCTATAGGGCTTTATCCCATTTCATACCCATTTTTCTATTTCATTGCAAAAATAAACAAAGTTCACCTTAAAGGGACATACCCCACTCCACCCCTCCATACCCATTTTTTCTAATTCAATGCAAACTAGGTGTGTGCTCTTTCTCCATTCACCTCAAGGTTTATTATCTAAAAGGAGCACAAAATCTTAAATACTATATCTGCTTATTTTTGTATCATCTGAGTTGCTCAGCATTCTTTATGCTAAAGAAGGCTTCATGTGTTGTTTCCGTGCTTTCATGTATATCGAGGGTCATTGTCCTTTCCTTCTTTCACTTGAAGTGACTGGTGCCCCTTTCTTCTCCTTCTGTTGTTGATACAGAAGGATACGAAGAGCTGGAAAACAAGAAACGG</genome_strand>
        <mrna_strand>GGAGGCATGGCGTTGATGGCGGAGAAATCCAGAGTGTGTGTAACTGGCGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATTGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAAGAACCTTGATAAAGCTGCTGAGAACCTTAAGCTCTTCAAGGCAGACTTGCTAGATCCCAACTCGCTTGCTGGAGCCATCAAAGGATGCAATGGAGTATTTCATGTTGCTTGTCCAGTTCCTTCGGGATCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCAGTGAACGGCACACTTAATGTTCTGAAGGCATGCTCTGAAGAAAACATCAAGAGGGTTGTGTTTGTGTCTTCTGTTGCTGCTGCT-TC-TAGACCCC-ACTGGCCGAAGGGCCAAGTGAAGGACGAGACTTGTTGGTCGGACAGTGAATACTGCAAAGCAACTAAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGATGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAGGTGGACTTGATATGGTAACTGTGCTCCCATCACTTGTTATAGGGCCAATGTTACAGAAGACAACAAATGCCAGTAGCTTGTTTCTCATTAAGCTGCTGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATACGAAGAGCTGGAAAAC-AGAAACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452561" ref_strand="+" ref_description="SGN-E452561 [cSTS-17-O23]">
      <seq>gaggcatggcgttgatggcggagaaatccagagtgtgtgtaactggcgcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacattgttcatggcaccgtcagagatccttatccctaagaaatcaatctcaattccatttaatttgcagctgatgacaagtatgctcatttgaagaaccttgataaagctgctgacaaccttaagctcttcaaggcagacttgctagatcccaactcgcttgctggagccatcaaaggatgcaatggagtatttcatgttgcttgtccagttccttcgggctctgtaccaaatcccgaggtagaacttgttgagcctgcagtgaacggcacacttaatgttctgaaggcatgctctgaagaaaacataggagggttgtgtttgtgtcttctgttgctgctgcttccttggaccccaactggccgaagggccaagtgaaggacgagacttgttggtcggacagtgaatactgcaaagcaactaataactggtactgtttttctaaaacaatggctgagaaagaagcttggtcatatgcaaanaaaagtggacttgatatggtaactgtgctcccagcactttgttgtagggccaatgttacagaagacaacaaatgcaagtagcttggctctcattaagctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13018" stop="10829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12718" g_stop="12590" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12540" i_length="50">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.51"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12539" g_stop="12338" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="338" r_length="209" r_score="0.856"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="523" r_length="185" r_score="0.925"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="0.92"/>
            <acceptor a_prob="0.902" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11129" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="683" r_length="160" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E452561" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12718" e_stop="12590"/>
          <exon e_start="12539" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGAT-T-CCTGAGAAATGATTCTTAA-T---TTGCA-CTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACAC-TTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTG</genome_strand>
        <mrna_strand>GAGGCATGGCGTTGATGGCGGAGAAATCCAGAGTGTGTGTAACTGGCGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATTGTTCATGGCACCGTCAGAGATCCTT..................................................ATCCCTAAGAAATCAATCTCAATTCCATTTAATTTGCAGCTGATGACAAGTATGCTCATTTGAAGAACCTTGATAAAGCTGCTGACAACCTTAAGCTCTTCAAGGCAGACTTGCTAGATCCCAACTCGCTTGCTGGAGCCATCAAAGGATGCAATGGAGTATTTCATGTTGCTTGTCCAGTTCCTTCGGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCAGTGAACGGCACACTTAATGTTCTGAAGGCATGCTCTGAAGAAAACAT-AGGAGGGTTGTGTTTGTGTCTTCTGTTGCTGCTGCTTCCTTGGACCCCAACTGGCCGAAGGGCCAAGTGAAGGACGAGACTTGTTGGTCGGACAGTGAATACTGCAAAGCAACTAAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACAATGGCTGAGAAAGAAGCTTGGTCATATGCAAANAAAAGTGGACTTGATATGGTAACTGTGCTCCCAGCACTTTGTTGTAGGGCCAATGTTACAGAAGACAACAAATGCAAGTAGCTTGGCTCTCATTAAGCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409685" ref_strand="+" ref_description="SGN-E409685 [PPI-14-F4]">
      <seq>ggaaaacatcaagagggttgtgtttgtgtcttctgttgctgctgcttccttggaccccaactggccgaagggccaagtgaaggacgagacttgttggtcggacagtgaatactgcaaagcaactaatgtagcttcttataacaatgcaattttgtgaatttgacttctgtgtaaattcaagattattagtcatgtttcttacatatgatacttagtgttggtaaaataatatatgatctgtatcttgaatacttaatttacttgagcagtgtcctgtttgattggcttagttattgtaagatgaatttgcatttgactcttgaatgctaattttgctagagcagcttcctatctgattgcattttgtggttccaaatgcatgcagaactggtactgtttttctaaaacgatggctgagaaagaagctggntcatatgcaaagcaaagtggacttgatatggtaactgtgctcccatcacttgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="11975" stop="10887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11676" g_stop="11187" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E409685" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11676" e_stop="11187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTAT</genome_strand>
        <mrna_strand>GGAAAACATCAAGAGGGTTGTGTTTGTGTCTTCTGTTGCTGCTGCTTCCTTGGACCCCAACTGGCCGAAGGGCCAAGTGAAGGACGAGACTTGTTGGTCGGACAGTGAATACTGCAAAGCAACTAATGTAGCTTCTTATAACAATGCAATTTTGTGAATTTGACTTCTGTGTAAATTCAAGATTATTAGTCATGTTTCTTACATATGATACTTAGTGTTGGTAAAATAATATATGATCTGTATCTTGAATACTTAATTTACTTGAGCAGTGTCCTGTTTGATTGGCTTAGTTATTGTAAGATGAATTTGCATTTGACTCTTGAATGCTAATTTTGCTAGAGCAGCTTCCTA----TCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGATGGCTGAGAAAGAAGCTGGNTCATATGCAAAGCAAAGTGGACTTGATATGGTAACTGTGCTCCCATCACTTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339531" ref_strand="+" ref_description="SGN-E339531 [cTOE-16-C4]">
      <seq>ggagagagatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttggtaactgtgctcccaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13001" stop="10894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12701" g_stop="12590" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="282" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="468" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11194" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="562" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E339531" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12701" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACAC</genome_strand>
        <mrna_strand>GGAGAGAGATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E410282" ref_strand="+" ref_description="SGN-E410282 [PPI-16-H7]">
      <seq>taaagacgagaaaacaaaagaagaaattacaatcgcagaggcatggcgttgatggcggagaaatccagagtgtgtgtaactggcgcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacattgttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaagaaccttgataaagctgctgacaaccttaagctcttcaaggcagacttgctagatcccaactcgcttgctggagccatcaaaggatgcaatggagtatttcatgttgcttgtccagttccttcgggctctgtaccaaatcccgaggtagaacttgttgagcctgcagtgaacggcacacttaatgttctgaaggcatgctctgaagaaaacatcaggagggttgtgtttgtgtcttctgttgctgctgcttccttggaccccaactggccgaanggccaagtgaaggacgagacttgttggtcggacagtgaatactgcaaagcaactaataactggtactgtttttctaaaaacatggctgagaaagaagcttggtcatatgcaaagaaaagtggacttgatatggtaactgtgctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13022" stop="10900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12727" g_stop="12590" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="166" r_length="138" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="336" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="522" r_length="186" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="0.92"/>
            <acceptor a_prob="0.902" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11200" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="610" r_length="88" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E410282" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12727" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCC</genome_strand>
        <mrna_strand>ACAATCGCAGAGGCATGGCGTTGATGGCGGAGAAATCCAGAGTGTGTGTAACTGGCGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATTGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAAGAACCTTGATAAAGCTGCTGACAACCTTAAGCTCTTCAAGGCAGACTTGCTAGATCCCAACTCGCTTGCTGGAGCCATCAAAGGATGCAATGGAGTATTTCATGTTGCTTGTCCAGTTCCTTCGGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCAGTGAACGGCACACTTAATGTTCTGAAGGCATGCTCTGAAGAAAACATCAGGAGGGTTGTGTTTGTGTCTTCTGTTGCTGCTGCTTCCTTGGACCCCAACTGGCCGAANGGCCAAGTGAAGGACGAGACTTGTTGGTCGGACAGTGAATACTGCAAAGCAACTAAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAAACATGGCTGAGAAAGAAGCTTGGTCATATGCAAAGAAAAGTGGACTTGATATGGTAACTGTGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299344" ref_strand="+" ref_description="SGN-E299344 [cLET-43-N8]">
      <seq>aaatttcgagtgtgtgtaactggagcatgtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaacggtggctgagaaagaagcttggtcatatgcaaagcaaagtggacttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12995" stop="10913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12695" g_stop="12590" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="276" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="462" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11213" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="537" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E299344" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12695" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTG</genome_strand>
        <mrna_strand>AAATTTCGAGTGTGTGTAACTGGAGCATGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367634" ref_strand="+" ref_description="SGN-E367634 [cLPT-14-C22]">
      <seq>agaaatgtcgagtgtgcgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggagtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccagaaggccaagtgaaggacgagacttgttggtcggacggtgaattctgcaaagcaactaataactggtactgtttttctaaaacggtggctgaaaaagaagcttggtcatatgcaaagcaaaatggacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12997" stop="10917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12697" g_stop="12590" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="278" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="464" r_length="186" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="0.96"/>
            <acceptor a_prob="0.902" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11217" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="535" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E367634" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12697" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGA</genome_strand>
        <mrna_strand>AGAAATGTCGAGTGTGCGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGAGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAGAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGACGGTGAATTCTGCAAAGCAACTAAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAACGGTGGCTGAAAAAGAAGCTTGGTCATATGCAAAGCAAAATGGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286419" ref_strand="+" ref_description="SGN-E286419 [cLES-11-J10]">
      <seq>aaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtatgtgtcttgtgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12995" stop="10965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12695" g_stop="12590" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="276" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="462" r_length="186" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11265" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="485" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E286419" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12695" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAAC</genome_strand>
        <mrna_strand>AAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTATGTGTCTTGTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335366" ref_strand="+" ref_description="SGN-E335366 [cTOE-2-K3]">
      <seq>tgtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgataactggtactgtttttctaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13027" stop="10966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12727" g_stop="12590" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="308" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="494" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11266" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="516" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E335366" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12727" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAA</genome_strand>
        <mrna_strand>TGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT......................................................................................................................................................................................................................................................................AACTGGTACTGTTTTTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725690" ref_strand="+" ref_description="SGN-E725690 [LA05BD06]">
      <seq>gtccaccgtttagtgtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgcttagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaagacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttaggacctcactggtcaaaggccaagtgaggacgagacttgttggntcgatggtgattctgcaagcactgatactggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13040" stop="11250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12740" g_stop="12590" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="322" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11550" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="503" r_length="181" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262">
            <donor d_prob="0.803" d_score="0.86"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11287" g_stop="11278" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="512" r_length="9" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E725690" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12740" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11550"/>
          <exon e_start="11287" e_stop="11278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACCGTTTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGC-TAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACT</genome_strand>
        <mrna_strand>GTCCACCGTTTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAGACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTAGGACCTCACTGGTC-AAAGGCCAAGTG-AGGACGAGACTTGTTGGNTCGATGGTG-ATTCTGC-AAGC-ACTGAT......................................................................................................................................................................................................................................................................-ACTGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714892" ref_strand="+" ref_description="SGN-E714892 [FB12DA01]">
      <seq>cgcttaatttgcactgcagctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgatgtagcttcttttacctatgctagtttgcgaatttgacttctctgtaaatttatgattattagccatgtttcttacatatgatacgtactgttggtaatgtaatatatgatctttatcttgaatacttaatttacttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12824" stop="11112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12526" g_stop="12338" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11735" g_stop="11409" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="516" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="541"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E714892" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12526" e_stop="12338"/>
          <exon e_start="11735" e_stop="11409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGA</genome_strand>
        <mrna_strand>CGCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350026" ref_strand="+" ref_description="SGN-E350026 [cTOS-4-I14]">
      <seq>aagagagttgtgtttgtgtcttctgttgctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattctgcaaagcaactgatgtagcttcttttacctatgctagtttgcgaatttgacttctctgtaaatttatgattattagccatgtttcttacatatgatacgtactgttggtaatgtaatatatgatctttatcttgaatacttaatttacttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="11966" stop="11112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11666" g_stop="11409" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E350026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11666" e_stop="11409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGA</genome_strand>
        <mrna_strand>AAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273905" ref_strand="+" ref_description="SGN-E273905 [cLEN-7-D9]">
      <seq>cgttgatgggagacaaatttccagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcggagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcatacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctatgtaccaaataccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagttgtgtttgtgtcatctgtagctgcttctgccttggaccccaactggccaaaaggccaagtgaaggacgagacttgttggtcggatggtgaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13009" stop="11265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12709" g_stop="12590" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="290" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11565" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="461" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E273905" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12709" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTC</genome_strand>
        <mrna_strand>CGTTGATGGGAGACAAATTTCCAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCGGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCATACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTATGTACCAAATACCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCATCTGTAGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288700" ref_strand="+" ref_description="SGN-E288700 [cLES-8-K4]">
      <seq>agagaaatttttagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaagagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12999" stop="11359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12699" g_stop="12590" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="280" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11659" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="357" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E288700" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12699" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGT</genome_strand>
        <mrna_strand>AGAGAAATTTTTAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278179" ref_strand="+" ref_description="SGN-E278179 [cLER-9-M7]">
      <seq>ttagtgtttggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctcaaggcatgctatgaagaaaacatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13031" stop="11364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12590" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="312" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11664" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="384" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E278179" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAG</genome_strand>
        <mrna_strand>TTAGTGTTTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332010" ref_strand="+" ref_description="SGN-E332010 [cTOD-16-B22]">
      <seq>gttgatgggagagaaatttcgagtgtgtgtaactggagcatgtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtcctgttccttccggctctgtaccaaatcccgagatagcagtggaatctttataaacagtctagaatgcacatgttattacttgttgaaagctattagaggtgtgtttctactcaatgaaggacgagatagtgaacttatattgggattttattatgatgtgctgttcaaaaagatcttttcaataagagacacgcttccctatttgagagcctaagacattgagaaatccagtgcatccaggagacattgtattgtgaccaagcattctgcatttctaggttgcttttggaacaactattcccaatgtgctctagttctgcaccaaaagaaagtaaaattcttcatatgttcaatgtcttgactgcaggtagaacttgttgagcctgctgtgaacggcacacttaatgttctncaggcatgctatgaagaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13008" stop="11369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12708" g_stop="12590" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="289" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="12071" i_length="267">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.723" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12070" g_stop="11669" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="691" r_length="402" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E332010" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12708" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="12070" e_stop="11669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACA</genome_strand>
        <mrna_strand>GTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCATGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG...........................................................................................................................................................................................................................................................................ATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTNCAGGCATGCTATGAAGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699445" ref_strand="+" ref_description="SGN-E699445 [FA10AE09]">
      <seq>catcgctagtgaagcttctcctttctaaagactacatatttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcatttgctggagccatcaaaggatgcgatggggtatttcatgttgctagtccctgttccttccggctctgtaccaaatcccgaggcagaatttgttgagcctgctgtgaacggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="12952" stop="11406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12652" g_stop="12590" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12338" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="234" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11735" g_stop="11706" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="264" r_length="30" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E699445" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12652" e_stop="12590"/>
          <exon e_start="12507" e_stop="12338"/>
          <exon e_start="11735" e_stop="11706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGT-CCTGTTCCTTCCGGCTCTGTACCAAATCCCGAGGTATGAATCTGCTATCACCTAATAACTTATTTCCTCTTGCTCTAAAACTAAGTAAACTGGGACAACCCAAATCTCACTAGGTACAAAAATACTTTGCTGTTTTTTTCCACCTGGTATGGGTCATAGTAGGAGGTATAAGGTACCCCGTGGAAAAGTCCAAATGCACACAAGTTGGCCCGGACACCACCATACATCTCCTGTGGTTTAGATATTATCAGCTTATTCACTTTGTTGATATTAATCACATCCTGTGGTTTAACTCTCCAGATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGC</genome_strand>
        <mrna_strand>CATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATATTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCATTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATTTGTTGAGCCTGCTGTGAACGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289730" ref_strand="+" ref_description="SGN-E289730 [cLET-4-L13]">
      <seq>ttagtgtgtggatgaggcatggcgttgatgggagagaaatttcgagtgtgtgtaactggagcaggtggatacgtggcttcatcgctagtgaagcttctcctttctaaagactacatagttcatggcaccgtcagagatccttctgatgacaagtatgctcatttgaataaccttgataaagctgctgacaaccttaagctattcaaggcagacttgctagatcccaactcacttgctggagccatcaaaggatgcgatggggtatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="13031" stop="12080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12731" g_stop="12590" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12507" g_stop="12380" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="270" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E289730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12731" e_stop="12590"/>
          <exon e_start="12507" e_stop="12380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTTGTAAAAAACACCTCTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCAT</genome_strand>
        <mrna_strand>TTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT..................................................................................CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220784" ref_strand="+" ref_description="SGN-E220784 [cLEL-22-I20](-)">
      <seq>ttttcttcttgattgctctcatgcttcacttaccatttctagtgttataacttctcaaaaacatgcctaatctccccatgctaaatagaattaacacttttaaaaggaacatgtaaagaaaaacaattatattttaaacacaacagtgcaaatgattgaagaacttcgctatccagtgagcaaaaacagcagccaaagtgacctcaaactccggtagggctcaaagaaccaatggcagaaataccaatcacaaccggtaacccgaatcgtccccaaccccttataatttgtttctctttctactgtattagttatttgcttcttttacttactgcctttatgactctattatttcacttcctatttattttattaagttattttggtgtcttctggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="14520" stop="13524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14220" g_stop="13825" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="415"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E220784" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14220" e_stop="13825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTC-TTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</genome_strand>
        <mrna_strand>TTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221167" ref_strand="+" ref_description="SGN-E221167 [cLEL-22-I20](-)">
      <seq>ttttaaaaggaacatgtaaagaaaaacaattattttttaaacacaacagtgcaaatgattgaagaacttcgctatccagtgagcaaaaacagcagccaaagtgtcctcaaactccggtagggctcaaagaaccaatggcagaaataccaatcacaaccggtaacccgaatcgtccccaaccccttataatttgtttctcttctactgtattagttatttgcttcttttacttactgcctttatgactctattatttcacttcctatttattttattaagttattttggtgtcttctggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="14423" stop="13524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14123" g_stop="13825" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="300" polyA_stop="317"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E221167" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14123" e_stop="13825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</genome_strand>
        <mrna_strand>TTTTAAAAGGAACATGTAAAGAAAAACAATTATTTTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGTCCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693474" ref_strand="-" ref_description="SGN-E693474 [LH_Ea01G16](-)">
      <seq>aaataatcaaggagttcaaagacggttagagaccaattcttatatcaactgatcttcttgctacgtgatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcatcggattggtagagcaggacgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagattccctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctgtaaacccgagtatgaatgttgggtatattcatacacttcgagtagaactacactggctggtgatgacatttgtatcgttgacagagcagcgctccggagaggcttttcttcttgattgctctcatgcttcacttaccatttctagtgttataacttctcaaaaacatgcttaatctccccatgctaaatagtattaacacttttaataggaacatgtaaagaaaaacaattatattttaaacacaacagtgcaaatgattgaagaacttcgctatccagtgagcaaaaacagcagccaaagtgacctcaaactccggtggggctcaaagaaccaatgaaagaaataccaatcacaaccggtcccaaatcgtccccaaccccttatcatttgttcctctttttctgtattagttatttgcttcttttacttactgccttttatgactctattatttcacttcctatttattttattaagttattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15777" stop="13537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15477" g_stop="15395" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="195" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="281" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14557" g_stop="14553" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="284" r_length="3" r_score="0.600"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14552" i_stop="14380" i_length="173">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14379" g_stop="13837" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="827" r_length="543" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E693474" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693474" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15477" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14557" e_stop="14553"/>
          <exon e_start="14379" e_stop="13837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGT-AAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCC-TTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTG</genome_strand>
        <mrna_strand>AAATAATCAAGGAGTTCAAAGACGGTTAGAGACCAATTCTTATATCAACTGATCTTCTTGCTACGTGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG................................................................................................................................................................................................................................................................................................................................................................AT-T-.............................................................................................................................................................................CCCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAACCCGAGTATGAATGTTGGGTATATTCATACACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGAGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCTTAATCTCCCCATGCTAAATAGTATTAACACTTTTAATAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTGGGGCTCAAAGAACCAATGAAAGAAATACCAATCACAACCGGT--CCCAAATCGTCCCCAACCCCTTATCATTTGTTCCTCTTTTTCTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288693" ref_strand="+" ref_description="SGN-E288693 [cLES-8-E24]">
      <seq>agtgaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagattccctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctgtaagccgagtatgaatgttggttatattcatagacttcgagtagaactacactggctggtgatgacatttgtatcgttgacagagcagcgctccggggaggcttttcttcttgattgctctcatgcttcacttaccatttctagggttataacttttaaaaaacatgcctaatctccccatgctaaatagaattaacacttttaaaaggaacatgttaagaaaaacaattatattttaaacacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15272" stop="13777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14972" g_stop="14910" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14557" g_stop="14553" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="66" r_length="3" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14552" i_stop="14380" i_length="173">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14379" g_stop="14077" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="369" r_length="303" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E288693" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14972" e_stop="14910"/>
          <exon e_start="14557" e_stop="14553"/>
          <exon e_start="14379" e_stop="14077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAAC</genome_strand>
        <mrna_strand>AGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG................................................................................................................................................................................................................................................................................................................................................................AT-T-.............................................................................................................................................................................CCCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGGGTTATAACTTTTAAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTTAAGAAAAACAATTATATTTTAAACACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289280" ref_strand="-" ref_description="SGN-E289280 [cLES-18-B13]">
      <seq>ataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcatcggattggtagagcagcacgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagatctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctgtaagccgagtatgaatgttggttatattcatagacttcgagtagaactacactggctggtgatgacatttgtatcgttgacagagcagcgctccggggaggcttttcttcttgattgctctcatgcttcacttaccatttctagtgttataacttctcaaaaacatgcgtaatctccccatgctaaatagaattaacacttttaaaaggaacatgtaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15775" stop="13798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15475" g_stop="15395" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="193" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="279" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14380" i_length="530">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14379" g_stop="14098" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="561" r_length="282" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E289280" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15475" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14379" e_stop="14098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAA</genome_strand>
        <mrna_strand>ATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGCACGTTTTGGACGCAAAG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCGTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256015" ref_strand="+" ref_description="SGN-E256015 [cLEG-35-H9]">
      <seq>aactttcaaaaattatggtgattaaagacagaatacttgaactaggacagaaggtggggcaaacaattatattcgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgcccttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcatcggattggtagagcaggacgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagatctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctgtaagccgagtatgaatgttggttatattcatagacttcgagtagaactacactggctggtgatgacatttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15954" stop="13950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15654" g_stop="15395" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="372" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="458" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14380" i_length="530">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14379" g_stop="14250" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="588" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E256015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15654" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14379" e_stop="14250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTA</genome_strand>
        <mrna_strand>AACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246397" ref_strand="+" ref_description="SGN-E246397 [cLEF-52-L17]">
      <seq>ttggttgactatggctatgaagtgacaacaattcaaggtgcccttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcatcggattggtagagcaggacgttttggacgcaaaggtgcgatattcaacttgctgtgcagtgaccgagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagatctcatggaatagtgaagaagactttgaaaatgctctgaagatagctggcttgctgtaagccgagtatgaatgttggttatattcatagacttcgagtagaactacactggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15841" stop="13967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15541" g_stop="15395" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="259" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="345" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14380" i_length="530">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14379" g_stop="14267" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="458" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E246397" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15541" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14379" e_stop="14267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGC</genome_strand>
        <mrna_strand>TTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376990" ref_strand="+" ref_description="SGN-E376990 [TUS-20-C13]">
      <seq>agaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaattatatttgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgctcttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcgtggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacacgagagtccaacagagccagatcatgaggtatacctgcatcggattggtagagcaggacgttttggacgcaagggtgcgatattcaacttgctgtgcagtgacagagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagattccctcatggagtaatgaagaagatttcgaaaatgctctgaagatagctggcttgctgtaagccgagtagaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="16004" stop="14003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15704" g_stop="15395" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="422" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="508" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14557" g_stop="14553" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="511" r_length="3" r_score="0.600"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14552" i_stop="14380" i_length="173">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14379" g_stop="14303" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="587" r_length="76" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E376990" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15704" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14557" e_stop="14553"/>
          <exon e_start="14379" e_stop="14303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACATTAGGCTCAAGTTAGTTGTTTCATGTTGGTTATGCAGATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTG</genome_strand>
        <mrna_strand>AGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCTCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGTGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACACGAGAGTCCAACAGAGCCAGATCATGAGGTATACCTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAGG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACAGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG................................................................................................................................................................................................................................................................................................................................................................AT-T-.............................................................................................................................................................................CCCTCATGGAGTAATGAAGAAGATTTCGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTA-GAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200398" ref_strand="+" ref_description="SGN-E200398 [cLEC-1-I9]">
      <seq>aacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgctcttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcgtggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacacgagagtccaacagagccagatcatgaggtatacctgcatcggattggtagagcaggacgttttggacgcaagggtgcgatattcaacttgctgtgcagtgacagagacaacatgctaatgtcaaagattgagaaccatttcaaccatcaagtggctgagatgtgattcaagataaagataagatgaacaaagcatttaggattatggtcgaatgcaacattttgtagtatgctattcacaggaaaaagtatctggccaatgtctagttcaatttggtatgatccatggtgacatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="15868" stop="14136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15568" g_stop="15395" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="286" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14910" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="372" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.822" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14557" g_stop="14416" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="512" r_length="140" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E200398" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15568" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14910"/>
          <exon e_start="14557" e_stop="14416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAGGCATGTATCTATTGTTTATGTTACTGCATTTTGGACTTTTCTTTATTTTTAGACGCTTAGGATCGATCTTTTTTTTTTGACGCTTAGGATGCTACCCAATTTTTTTGTAGAATTAGGTCATACGTGCATACAGGTGCTTATCATCTGACTGCTTATGTTCATGGTCTTCTAAATAAGGCTGGATATATAGTAACATGATTAGTTTAAAGTATATTACCCCCAGTTAAGATGGAACAAACTTACCTCTCTCTTTAAAATTTCATCATTGTGTGTGTGAGGAGGGGAGTGGGGGTGCAAATTCACACTAGAGTAAAATCTAAAAACTTATAATACAATTCCGAGTGAAATGCAGATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGG-GACATAACAT</genome_strand>
        <mrna_strand>AACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCTCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGTGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACACGAGAGTCCAACAGAGCCAGATCATGAGGTATACCTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAGG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACAGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG................................................................................................................................................................................................................................................................................................................................................................ATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTT-T-GTAGTATGCTATTCACAGGAAAAAGTATCTGGCCAATGTCTAGTTCAATTTGGTA-TGATCCATGGTGACATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233179" ref_strand="+" ref_description="SGN-E233179 [cLED-6-H1]">
      <seq>agaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaattatatttgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgctcttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcgtggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacacgagagtccaacagagccagatcatgaggtatacctgcatcggattggtagagcaggacgttttggacgcaagggtgcgatattcaacttgctgtgcagtgacagagacaacatgctaatgtcaaagattgagaaccatttcaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="16004" stop="14623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15704" g_stop="15395" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="422" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14995" g_stop="14923" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="495" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E233179" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15704" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCA</genome_strand>
        <mrna_strand>AGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCTCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGTGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACACGAGAGTCCAACAGAGCCAGATCATGAGGTATACCTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAGG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACAGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377776" ref_strand="+" ref_description="SGN-E377776 [TUS-21-J11]">
      <seq>ttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagcgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaattatatttgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgctcttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcgtggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacacgagagtccaacagagccagatcatgaggtatacctgcatcggattggtagagcaggacgttttggacgcaagggtgcgatattcaacttgctgtgcagtgacagagacaacatgctaatgtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17633" stop="14644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17333" g_stop="17305" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="95" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15395" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="512" r_length="417" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15217" g_stop="15106" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="624" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14995" g_stop="14944" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="676" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E377776" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17333" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15395"/>
          <exon e_start="15217" e_stop="15106"/>
          <exon e_start="14995" e_stop="14944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAGGTAATTTGTTGTCACTTTCTTATGCATGCTTCCTTGATAGATTAATGGCTGAAAATGAGCCACATATATATGTTGTGAACTTTATGCAACCTTTCCCTCGTGTTGAGCAGGTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAA</genome_strand>
        <mrna_strand>TTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCTCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGTGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACACGAGAGTCCAACAGAGCCAGATCATGAGGTATACCTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAGG..............................................................................................................GTGCGATATTCAACTTGCTGTGCAGTGACAGAGACAACATGCTAATGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304853" ref_strand="+" ref_description="SGN-E304853 [cLEX-10-A19]">
      <seq>cgaggggaaactgggcatgattgcatgaaaattcttgtgtttgatgaagcagaccacatgttggcagaagcggtttaggatgattccataaaataatgaagcaattgttaaagccagcgctaactgccagggctttcttttctgcaacttttggggaaaatgtcaagcatttgtgacaaaaattgtcaagatcttttncggcaagattacaaccaaatgtttgtgaagaaagaagaactttcgctggattcagtgaagcagtataaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatacttgaactaggacagaaggtggggcaaacaattatattcgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgcccttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatgagagtccaacagagccagatcatgaggtatacttgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17669" stop="14839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17375" g_stop="17305" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="130" r_length="62" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15395" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="543" r_length="413" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15217" g_stop="15139" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="622" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E304853" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17375" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15395"/>
          <exon e_start="15217" e_stop="15139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATC</genome_strand>
        <mrna_strand>CGAG-GGGAAACTGGGCATGA-TTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGA-...............................................................................................................................................................................................................................................................................................AGCGG-TTT-AGGATGATTCCATAA-AATAATGAA-GCAATTGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GCTT-TCTTTTCTGCAACTTTTGGGGAAAATGTC-AAGCATTTGTGACAAAAATTG-TCAAGATCTTTTNCGGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273528" ref_strand="+" ref_description="SGN-E273528 [cLEN-6-K13]">
      <seq>aaacaagtgggtgacgggaaggaaactgggcatgagttgcatgaaaattcttgtgtttgatgaagcagaccacatgttggcagagagcggttttcaggatgattccataagaataatgaaggcaattgttaaagccagcgctaactgccaggtgcttctcttttctgcaacttttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatgtttgtgaagaaagaagaactttcgctggattcagtgaagcagtataaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatacttgaactaggacagaaggtggggcaaacaattatattcgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgcccttaggcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcggggatttgaccaatcacaggttaatttggtggttaattatgacctccctgtgagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17689" stop="14878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17389" g_stop="17305" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="151" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15395" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="568" r_length="417" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15217" g_stop="15178" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="608" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E273528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17389" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15395"/>
          <exon e_start="15217" e_stop="15178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAGGTAACTTTAGATTTGAGGCTTTCCAGTTGCCAACCTTATATATGCTATACAAAGTTGTTTCTTCTTCTGAATGTGAAGCTTGTTGTGTAGCTATAATATTTAATATCTTTTCTTTCTTGATTTCTGTCTTGGTGGCTAATATTGGGAAAATCTTAAAAGATATGATACTGTTTGCAGGTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATG</genome_strand>
        <mrna_strand>AAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG.................................................................................................................................................................................GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704469" ref_strand="+" ref_description="SGN-E704469 [FA24BE09]">
      <seq>atcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaattcttgtgtttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagtgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaatcatatttgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaacaattcaaggtgctcttangcaagaagacagagacaaaataatcaaggagttcaaagatggattgacacaaattcttatatcaactgatcttcttgctcgtggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="18809" stop="15106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18509" g_stop="18376" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17532" g_stop="17305" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="362" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="428" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15811" g_stop="15406" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="834" r_length="406" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E704469" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18509" e_stop="18376"/>
          <exon e_start="17532" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTG</genome_strand>
        <mrna_strand>ATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAATTCTTGTGTTTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGTGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATCATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCTCTTANGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGTGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241477" ref_strand="+" ref_description="SGN-E241477 [cLED-28-O1]">
      <seq>ttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagcgctaactgccaggtgcttctgttttctgcaacgcttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaaaaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttctaaaatcatggggattaaagacagaatactagaactcggacagaaggtggggcacacaattatatttgttcgtaccacaaacagtgcgagtatgttgcataagtcattggttgactatggctatgaagagacaacaattcaaggtgctcttaggcacgaagacagagacacaataatcaaggagttcaaagatggattgacacacattcttatatcaactgatcttcttgctcgtggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17633" stop="15107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17333" g_stop="17305" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="95" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15407" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="500" r_length="405" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E241477" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17333" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTT</genome_strand>
        <mrna_strand>TTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGCTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAAAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCTAAAATCATGGGGATTAAAGACAGAATACTAGAACTCGGACAGAAGGTGGGGCACACAATTATATTTGTTCGTACCACAAACAGTGCGAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGAGACAACAATTCAAGGTGCTCTTAGGCACGAAGACAGAGACACAATAATCAAGGAGTTCAAAGATGGATTGACACACATTCTTATATCAACTGATCTTCTTGCTCGTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324981" ref_strand="+" ref_description="SGN-E324981 [cTOC-11-F14]">
      <seq>cctgggactataaacaagtgggtgacgggaaggaaactgggcatgagttgcatgaaaattcttgtgtttgatgaagcagaccacatgttggcagagagcggttttcaggatgattccataagaataatgaaggcaattgttaaagccagcgctaactgccaggtgcttctcttttctgcaacttttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatgtttgtgaagaaagaagaactttcgctggattcagtgaagcagtataaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatacttgaactaggacagaaggtggggcaaacaattatattcgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17700" stop="15212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17400" g_stop="17305" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="162" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15512" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="462" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E324981" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17400" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACA</genome_strand>
        <mrna_strand>CCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200639" ref_strand="+" ref_description="SGN-E200639 [cLEC-9-G24]">
      <seq>taaagccagcgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaattatatttgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17273" stop="15213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16973" g_stop="16952" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15811" g_stop="15513" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="321" r_length="299" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E200639" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16973" e_stop="16952"/>
          <exon e_start="15811" e_stop="15513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAAC</genome_strand>
        <mrna_strand>TAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242976" ref_strand="+" ref_description="SGN-E242976 [cLED-31-H8]">
      <seq>ttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagcgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaattatatttgttcgtaccagaaacagtgcaagtatgttgcataagtcattggttgactatggctatgaagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17633" stop="15216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17333" g_stop="17305" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="95" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15516" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="391" r_length="296" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E242976" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17333" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGAC</genome_strand>
        <mrna_strand>TTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATTATATTTGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273529" ref_strand="+" ref_description="SGN-E273529 [cLEN-6-K15]">
      <seq>accacatgttggcagaaagcggttttcaggatgattccataataataatgaaggcaattgttaaagccagcgctaactgccaggtgcttctcttttctgcaacttttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatgtttgtgaacaaagaataactttcgctggattcagtgaagcagtataaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatacttgaactaggacagaaggtggggcaaacaattatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17323" stop="15282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17321" g_stop="17305" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="83" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15582" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="313" r_length="230" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E273529" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17321" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATT</genome_strand>
        <mrna_strand>ACCACATGTTGGCAGAA...............................................................................................................................................................................................................................................................................................AGCGGTTTTCAGGATGATTCCATAATAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAACAAAGAATAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302410" ref_strand="+" ref_description="SGN-E302410 [cLEW-27-L16]">
      <seq>ttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaattcttgtgtttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagcgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17802" stop="15284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17502" g_stop="17305" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="264" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15584" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="492" r_length="228" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E302410" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17502" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATA</genome_strand>
        <mrna_strand>TTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAATTCTTGTGTTTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244763" ref_strand="+" ref_description="SGN-E244763 [cLED-38-N23]">
      <seq>ttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagcgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatctttttgtgcaagattacaatcaaatgtttgtgaagaaagaagaactttcactggattcagtgaagcagtataaagtgcagtgtccggacgaactttcaaaaatcatggtgattaaagacagaatactagaactaggacagaaggtggggcaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17633" stop="15288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17333" g_stop="17305" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="95" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15588" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="319" r_length="224" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E244763" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17333" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAAT</genome_strand>
        <mrna_strand>TTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTGTGCAAGATTACAATCAAATGTTTGTGAAGAAAGAAGAACTTTCACTGGATTCAGTGAAGCAGTATAAAGTGCAGTGTCCGGACGAACTTTCAAAAATCATGGTGATTAAAGACAGAATACTAGAACTAGGACAGAAGGTGGGGCAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704176" ref_strand="+" ref_description="SGN-E704176 [FA23CC04]">
      <seq>cgctaatgaggacgctgctgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactctctctgatccggaagattccagcatagaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataacggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcaaaacgtccacctgttacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacgggaaggaaactgggcatgagttgcatgaaaattcttgtgtttgatgaagcagaccacatgttggcagagagcggttttcaggatgattccataagaataatgaaggcaattgttaaagccagcgctaactgccaggtgcttctcttttctgcaacttttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatgtttgtgaagaaagaagaactttcgctggattcagtgaagcagtataaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatacttgaactagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19196" stop="15308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18898" g_stop="18790" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="403" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17305" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="631" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="697" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15811" g_stop="15608" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="901" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E704176" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18898" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGA</genome_strand>
        <mrna_strand>CGCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273714" ref_strand="+" ref_description="SGN-E273714 [cLEN-7-I5]">
      <seq>tgaaaattcttgtgtttgatgaagcaaaccacatgttggcagagagcggttttcaggatgattccataagaataatgaaggcaattgttaaagccagcgctaactgccaggtgcttctcttttctgcaacttttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttcgtgcaagattacaaccaaatgtttgtgaagaaagaagaactttcgctggattcagtgaagcagtttaaagtacagtgtccagatgaactttcaaaaattatggtgattaaagacagaatacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="17648" stop="15315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17348" g_stop="17305" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="110" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15811" g_stop="15615" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="307" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E273714" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17348" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGA</genome_strand>
        <mrna_strand>TGAAAATTCTTGTGTTTGATGAAGCAAACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTTTAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258175" ref_strand="+" ref_description="SGN-E258175 [cLEG-49-C24]">
      <seq>actccactctctctgagccggaagattcaagcatacaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaattcttgtgtttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagccttaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcatagcatttgtgacaaaattgttcaagatctttttgtgcagattacaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19130" stop="15421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18830" g_stop="18790" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="335" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17305" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="563" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="629" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15811" g_stop="15721" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="718" r_length="89" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E258175" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18830" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAA</genome_strand>
        <mrna_strand>ACTCCACTCTCTCTGAGCCGGAAGATTCAAGCATACAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCCTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAATTCTTGTGTTTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCCTTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCATAGCATTTGTGAC-AAAATTGTTCAAGATCTTTTTGTGC-AGATTACAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374891" ref_strand="-" ref_description="SGN-E374891 [TUS-15-O17](-)">
      <seq>ctccactctctctgagccggaagattcaagcatacaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaattcttgtgtttgatgaagcggaccacatgttggcagagagtggttttcaggatgattccataagaataatgaaggcaatcgttaaagccagcgctaactgccaggtgcttctgttttctgcaacgtttggggaaaatgtcaaagcatttgtgacaaaaattgttcaagatcttttttgtgcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="18985" stop="15441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18829" g_stop="18790" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="334" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17305" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="562" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17017" g_stop="16952" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="628" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140">
            <donor d_prob="0.944" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15811" g_stop="15731" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="710" r_length="82" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E374891" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374891" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18829" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17305"/>
          <exon e_start="17017" e_stop="16952"/>
          <exon e_start="15811" e_stop="15731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAGGTTGGTTAAAGTTGGCCTTGTGCTTTTTAAATTTTCAGTTCACCTGATGATGGAATTCTCTTTGAGGTTTTTGCTGCTGTAAATTGCTTAGTTTGTAATAAGAGTCTGATAAACTTCATTGGCCACATGCAAAGTTGAGTCTCTCAAATGGGTTGAGCCTTAGAGTGGCACATAGAAGGCTTAGACAGATATAGGAAGAGACCTTCCTCAGTGGTTGTTCGGTCATACCTTTGGTGCATCAAATTATATTTTACAACAGTAGTTACTACGCCTCAGTCGCTACTTAAGTTGAGGGTGAATCAAGACTGATTATGTCAATCAATTTATCTTGAAACTGGTAAAGTTGCATTCTCTAATGATGGAGACCTTCAAAAAATTGTTAAGAACAGCCTAAGGTACTTACTCAGCTTCTTCTATGCAATTTTCTGTTGTATACTCGAGCATAGTCCATTTGATCTCTGTTAGACAGAAGAAGAAAAAAGAAAGAGACGGTCATTTGTCTCTTTTTTCTCACAGTCACGTCACTCCATTTAAACTCATCTCAGGCCTATACTATATAAAAATTAATGTACGAAGTAGTAAAATTTCTTTGTATTTTCTACTGACGTATAAAATTGTATCTCTCTGTAAGGAAGAACAACTCCTAGAGAAGTATAGGACGCAAAATAGAAGTGCTGGTGCTAATATGAATAGGACATTTCCTCATTCAGTAGGTATGTCCTTCATGGAGCATTTGCCAAATTCAGTGTTCCAAAACTAACCAACTAAATTTGCTTTGAAGTATAAGTGACAATGAACATAGTACTCATAGCTGCAAACAATAAAGAGAAGCAAAATCGCTGCTAGTCTTTATCTCACTAGTAAAAAGGAGAGTAGAATATCAAGCAATATCTAAAATCTAAAAAAATCTTCACTGTTTTCATTTAGTGAGTACCGAGTATAGCCTAAGGCTTAAATTAAGGTGCATTTCATAGAGTACCTGAGTTTATTTTCTGCAAAAAAGGGGATGTGGTGAGGACTGCAAATGGGTCTGTAACTTGTTGTTTATAATACATTCTTCCTGATAAGCTTCCCCAATTGGATGATTATTTGGAAAAAAATTGATGTTGAACTTTTCTTTTTCATCATCTCAATTTGCAGGTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATC-TTTTCGTGCAAGAT</genome_strand>
        <mrna_strand>CTCCACTCTCTCTGAGCCGGAAGATTCAAGCATACAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCCTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAATTCTTGTGTTTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATCGTTAAAGCCAGCGCTAACTGCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTTCTGTTTTCTGCAACGTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTTTGTGCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273694" ref_strand="+" ref_description="SGN-E273694 [cLEN-6-N20]">
      <seq>tctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaattcttgtgtttgatgaagcggaccacatgttggcagagagtggttttcaggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="18712" stop="16999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18412" g_stop="18376" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17532" g_stop="17305" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="265" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287">
            <donor d_prob="0.968" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17017" g_stop="17000" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="283" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E273694" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18412" e_stop="18376"/>
          <exon e_start="17532" e_stop="17305"/>
          <exon e_start="17017" e_stop="17000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAGGTAATTCATTCTCTATCCGCATTTGCTAGTGTGCCTTTGGTTTTTCCCCCCTTCTGTTGATATTTATTGTTGTTATACATATAGTTTTTGAATTATTTAAATCACTTTTGTTTTGTGTTTGTTGGTGTAAAAAATGAATTTAACCTTTGCTTTTTAAGATGAACGGTAGTGTTGAGCATAATGAGCTAGTTTTCTAGTTTCCAGTCTCATATTTAGGGATTTTGCTCCAAATGTTAAGAGTTTGTGCTTTCAGTATCTGAATTGATTTTTTTTCTGTGCATGCACAGAGCGGTTTTCAGGATGAT</genome_strand>
        <mrna_strand>TCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAATTCTTGTGTTTGATGAAGCGGACCACATGTTGGCAGAG...............................................................................................................................................................................................................................................................................................AGTGGTTTTCAGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245381" ref_strand="+" ref_description="SGN-E245381 [cLEF-53-J18]">
      <seq>gagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataacggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcaaaacgtccacctgttacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacgggaaggaaactgggcatgagttgcatgaaaattcttgtgtttgatgaagcagaccacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="18934" stop="17013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18634" g_stop="18376" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17532" g_stop="17313" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="479" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E245381" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18634" e_stop="18376"/>
          <exon e_start="17532" e_stop="17313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGT</genome_strand>
        <mrna_strand>GAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201406" ref_strand="+" ref_description="SGN-E201406 [cLEC-4-B20]">
      <seq>acaaatcaccgaagagatttgaggatttgaacttatctgctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgttcaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaattcttgtgtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="18947" stop="17028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18647" g_stop="18376" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17532" g_stop="17328" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="477" r_length="205" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E201406" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18647" e_stop="18376"/>
          <exon e_start="17532" e_stop="17328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATG</genome_strand>
        <mrna_strand>ACAAATCACCGAAGAGATTTGAGGATTTGAACTTATCTGCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCCTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTTCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAATTCTTGTGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256714" ref_strand="+" ref_description="SGN-E256714 [cLEG-40-B4]">
      <seq>aaaactccactctctctgagccggaagattcaagcatacaagcggttacatctggcgatactatgtacaaatcaacgaagagattcgaggatcttaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgacgctgaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaacaagtgggtgacggcaaggaaactgggcatgagttgtatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19133" stop="17043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18833" g_stop="18790" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.970" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="338" r_length="294" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17343" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="528" r_length="190" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E256714" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18833" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAA</genome_strand>
        <mrna_strand>AAAACTCCACTCTCTCTGAGCCGGAAGATTCAAGCATACAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAACGAAGAGATTCGAGGATCTTAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCCTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGACGCTGAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGCAAGGAAACTGGGCATGAGTTGTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209137" ref_strand="+" ref_description="SGN-E209137 [cLEC-38-I14]">
      <seq>gcagtcttccgcttcgaacgaagaaggcgctactgccgagataaatatcggatctttacaagtcgatgagtccaaaagagaaaactccactctctctgagccggaagattcaagcatacaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcgaaacggccgcctgtcacggcacaagtagtgattggcacacctgggactataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19196" stop="17087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18910" g_stop="18790" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="418" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17387" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="564" r_length="146" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E209137" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18910" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTCTTCCGCTTCTAATG-AG--GACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAA</genome_strand>
        <mrna_strand>GCAGTCTTCCGCTTCGAACGAAGAAGGCGCTACTGCCGAGATAAATATCGGATCTTTACAAGTCGATGAGTCCAAAAGAGAAAACTCCACTCTCTCTGAGCCGGAAGATTCAAGCATACAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCCTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCGAAACGGCCGCCTGTCACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480791" ref_strand="+" ref_description="SGN-E480791 [cSTD-15-G2]">
      <seq>gcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaagaaggcgctactgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactctctctgagccggaagattccagcatacaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataacatcagagttaggtatcccagcagattctgccaactatattccaatttcaaaacggccgcctgttacggcacaagtagtgattggcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19206" stop="17100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18942" g_stop="18790" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="450" r_length="294" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17400" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="583" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E480791" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18942" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATG-AG--GACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACAC</genome_strand>
        <mrna_strand>GCAGACCAAGCCGACGAGATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAAGAAGGCGCTACTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGAGCCGGAAGATTCCAGCATACAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGGCCGCCTGTTACGGCACAAGTAGTGATTGGCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200052" ref_strand="+" ref_description="SGN-E200052 [cLEC-8-I12]">
      <seq>gaaaactccactctctctgagccggaagattcaagcatacaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccctacaagaatcttattgctcaggctcataatggttctggtaaaactacttgctttgtgcttgggatgttgagtcggattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcacggcataacatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19134" stop="17185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18834" g_stop="18790" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="339" r_length="294" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17485" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="386" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E200052" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18834" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCA</genome_strand>
        <mrna_strand>GAAAACTCCACTCTCTCTGAGCCGGAAGATTCAAGCATACAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCCTACAAGAATCTTATTGCTCAGGCTCATAATGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGGATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCAC-GGCATAACATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284987" ref_strand="+" ref_description="SGN-E284987 [cLER-19-M7]">
      <seq>cggatctctactttttcgatgattccaaaagagacaactccactggtctctgatccggaagattccagcatagaagcggttacatctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataacggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagcttgctgcccctcaagctctctgtatctgtccaaccagagaattggctattcagaatatggaagtgctattgaagatggggaagttcactggcataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19151" stop="17188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18865" g_stop="18790" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18376" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="372" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17532" g_stop="17488" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="417" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E284987" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18865" e_stop="18790"/>
          <exon e_start="18669" e_stop="18376"/>
          <exon e_start="17532" e_stop="17488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATCTCTAC-AAGTCGATGAGTCCAAAAGAGACAACTCCACT-CTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAGGTATGATATAAGATGCGAATACCCTTTTTCTTCTTCTTTTTGTTGTTGATTTTTGTTTTCGCCTGCGCCTGGATCTTGTTACTGGTAAACAATTTCCTTAAACTTAGTATGGCTTAGGCAGATGGAAAGAAATCAAGTTATCTGCTTAGGCAGATGGAAAGTAATCAAGTTCTCCTTGTTGGCAACCAGGGGTGTGGCCAAGTTATTAATCAAGTGGTTGAGAGCGCGACATCTTAGGTTCAAAACACTAGGTGACTCTTCTTATCTGTGGTGAGAGGTTAAATTAGTCGAGGTAGTCTCCTAGATCTTTGATCAACACCATTGACCTAGGCCTATCTTTGGGTGTAACAATAATGTTGGCATTGGAGAGTTAATTTCTTGCAGGATCAATTACTTCACAACCCAATGCGTAGCTAAATAGAAAGTTTTGCGCAACATTATGAGTGTCAGATTATGCATGTGTTTTAGTTTTCTATATGCTTCACTAGATATCTATTTCCAGAAAGGTATATGCTGCACGACATATCTATGTTATAGAAACTTTACCTACATTGCTTGTATATAATGTTGCCTGTATGGTTATGTTTTATGTGTTCATGCATATAGTTTTTGAGATGGCCAGACATACGCGAAGTATTCATATTTGATTTGATTGTTTGCCATCTGCAGTGGTGGTTTAAGCTGTTTTTATGGGAAATTGTAGAATCAAAAAGGAACTTGTGGAAAGAATGATATTTTTTAGCGTTTTTACATTTTAAAGAAGAATTAAGACTTTTCTTCATTATTCAACAAACAAAAAAATACTTTAGAAGGTTTAGTTTTAAATGGTTGATAATGTTACAGAATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACA</genome_strand>
        <mrna_strand>CGGATCTCTACTTTTTCGATGATTCCAAAAGAGACAACTCCACTGGTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365783" ref_strand="+" ref_description="SGN-E365783 [cLPT-8-E19]">
      <seq>ggaattcggcacgagggccgcttctacgacagcaaacccacccgaatccaaaagttgggcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaggacgctgctgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactctctctgatccggaagattccagcatagaagcggttacgtctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataacggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagcttgctgcccctcaagctctctgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19294" stop="18101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18790" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="211" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18401" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="480" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E365783" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18790"/>
          <exon e_start="18669" e_stop="18401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</genome_strand>
        <mrna_strand>GCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAGATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACGTCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365626" ref_strand="+" ref_description="SGN-E365626 [cLPT-12-K14]">
      <seq>catggccgacgcttcctttacctccactggcaccagtagcaccgtcgcttctacgacagcaaacccacccgaatccaaaagttgggcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaggacgctgctgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactctctctgatccggaagattccagcatagaagcggttacgtctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtcagcctatgattcttacgcctgcgtacaagaatcttattgctcatgctcataacggttctggtgaaactacttgctttgtgcttgggatgttgagtcgaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19326" stop="18136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19027" g_stop="18790" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18436" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="472" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E365626" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19027" e_stop="18790"/>
          <exon e_start="18669" e_stop="18436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGAT</genome_strand>
        <mrna_strand>CATGGCCGACGCTTCCTTTACCTCCACTGGCACCAGTAGCACCGTCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAGATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACGTCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTCAGCCTATGATTCTTACGCCTGCGTACAAGAATCTTATTGCTCATGCTCATAACGGTTCTGGTGAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270603" ref_strand="+" ref_description="SGN-E270603 [cLEN-1-M19]">
      <seq>tccaatggccgacgcttacattacctccactgccaccagtagcatcgccgcttctacgacagcaaacccacccgaatccaaaagttgggcagaccaagccgacgaaatcgatcaagctgagcagccttccgcttataatgaggacgctgctgccgaaataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactttctctgatccggaagattccagcatagaagcggttacatgtggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19330" stop="18267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19030" g_stop="18790" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18567" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="344" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E270603" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19030" e_stop="18790"/>
          <exon e_start="18669" e_stop="18567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGC</genome_strand>
        <mrna_strand>TCCAATGGCCGACGCTTACATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGCCTTCCGCTTATAATGAGGACGCTGCTGCCGAAATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTTTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACATGTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717781" ref_strand="+" ref_description="SGN-E717781 [FC02CH08]">
      <seq>gcggccaatcggccgaattgatgagctgcttcagtcattttagggggaaaactgatttttgtttaggagaaggaagaaattggaatggcgagtgattggaggaaatcggtgggtaatgttagatccttcgtcggaaacttaaccggaggtttaaggggtggaagcaatttggcatcttgggttgtcgccggtactttagcttactttctatgggtcaagccatctcaggaactcaagaggcagcaagaggaaaaggccgctttggcggctgcatcagatgcttatcgctatgttgagaagcgaaaacccgttcctgatccgcaggaaactggattgatatacggtaacaagaacaaagctaaaagagctgaagaatagagcttcgcgagaattccatgccgttctgtaagtttaatgaatgctcagggaattgtctgctcattggcgtatagggaccttatatacttatacttctgaactcattttctttatagggccaaataattatctatacctagaaaaggaaatcatgtaagctttaagtttttgtggatataatgtagcatgttttttgttttcaaggtgaggttcttgaatagcatttactggtttatcagcatgatgttttatttccttttatcttagctctacatgaacatttttgttaattgttcaaagtttctatgtattggttcgactagcttctattcttatgttaattactccataaggattttgtattaacagtcatcaaatttcaagaatctttctcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="21090" stop="22625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21406" g_stop="21634" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="249" r_length="229" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21635" i_stop="21715" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21716" g_stop="21790" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="324" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21791" i_stop="21872" i_length="82">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21873" g_stop="22325" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="777" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E717781" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21406" e_stop="21634"/>
          <exon e_start="21716" e_stop="21790"/>
          <exon e_start="21873" e_stop="22325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGCTGCTTCAGTTAATCTAGGGGGAAAACTGATTTTTGTTTAGGAGAAGGAAGAAATTGGAATGGCGAGTGATTGGAGGAAATCGGTGGGTAATGTTAGATCCTTCGTCGGAAACTTAACCGGAGGTTTAAGGGGTGGAAGCAATTTGGCATCTTGGGTTGTCGCCGGTACTTTAGCTTACTTTCTATGGGTCAAGCCATCTCAGGAACTCAAGAGGCAGCAAGAGGTATTTCTCATTTTTGTATTTACAAGTCAATCAATTGATAAGCCCTCAATTACAAACTAGTTGTTAATTTTTGGGTGACAGGAAAAGGCCGCTTTGGCGGCTGCATCAGATGCTTATCGCTATGTTGAGAAGCGAAAACCCGTTCCTGATCCGCAGGTACTTTGCCCTTTTCATTTCCATCAAGGGGTGTTTGTGCTGTATTCAGTATTAGTCTTATCCATTTCATGAATTTTGGCAGGAAACTGGATTGATATACGGTAACAAGAACAAAGCTAAAAGAGCTGAAGAATAGAGCTTCGCGAGAATTCCATGCCGTTCTGTAAGTTTAATGAATGCTCAGGGAATTGTCTGCTCATTGGCGTATAGGGACCTTATATACTTATACTTCTGAACTCATTTTCTTTATAGGGCCAAATAATTATCTATACCTAGAAAAGGAAATCATGTAAGCTTTAAGTTTTTGTGGATATAATGTAGCATGTTTTTTGTTTTCAAGGTGAGGTTCTTGAATAGCATTTACTGGTTTATCAGCATGATGTTTTATTTCCTTTTATCTTTGCTCTACATGAACATTTTTGTTAATTGTTCAAAGTTTCTATGTATTGGTTCGACTAGCTTCTATTCTTATGTTAATTACTCCATAAGGATTTTGTATTAACAGTCATCAAATTTCAAGAATCTTTCTCTTTTG</genome_strand>
        <mrna_strand>ATGAGCTGCTTCAGTCATTTTAGGGGGAAAACTGATTTTTGTTTAGGAGAAGGAAGAAATTGGAATGGCGAGTGATTGGAGGAAATCGGTGGGTAATGTTAGATCCTTCGTCGGAAACTTAACCGGAGGTTTAAGGGGTGGAAGCAATTTGGCATCTTGGGTTGTCGCCGGTACTTTAGCTTACTTTCTATGGGTCAAGCCATCTCAGGAACTCAAGAGGCAGCAAGAG.................................................................................GAAAAGGCCGCTTTGGCGGCTGCATCAGATGCTTATCGCTATGTTGAGAAGCGAAAACCCGTTCCTGATCCGCAG..................................................................................GAAACTGGATTGATATACGGTAACAAGAACAAAGCTAAAAGAGCTGAAGAATAGAGCTTCGCGAGAATTCCATGCCGTTCTGTAAGTTTAATGAATGCTCAGGGAATTGTCTGCTCATTGGCGTATAGGGACCTTATATACTTATACTTCTGAACTCATTTTCTTTATAGGGCCAAATAATTATCTATACCTAGAAAAGGAAATCATGTAAGCTTTAAGTTTTTGTGGATATAATGTAGCATGTTTTTTGTTTTCAAGGTGAGGTTCTTGAATAGCATTTACTGGTTTATCAGCATGATGTTTTATTTCCTTTTATCTTAGCTCTACATGAACATTTTTGTTAATTGTTCAAAGTTTCTATGTATTGGTTCGACTAGCTTCTATTCTTATGTTAATTACTCCATAAGGATTTTGTATTAACAGTCATCAAATTTCAAGAATCTTTCTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339718" ref_strand="+" ref_description="SGN-E339718 [cTOE-16-I16]">
      <seq>tgaatctgacagtgatgctggtgcaagttctggaggcggagctcccaatcgccgtcctcgaggccgtccgcctggatctaaaaataagcccaagcctccaatcatcgtgacgagagatacgcctaacgcactccgatctcacgtgcttgaagtttcgaccgatgttgatatcatggaaagtatctccaattacgcaaggcggagagggagaggtgtttgtattcttagtggtagcggcacagttaccaacgtcaaccttcgtcagcctgctgcaagtgtagtcacactccacggacgtttcgaaatacttagcctctcaggtacggtgcttcctccgcctgcaccgcccgcctccagtgggatctctatatttttatcaggtggacaaggacaagtggttggaggatccgttgtagggcctttgatcgcatcaggtccagtcgtcttaatggctgcctcttttgctaatgctgtatttgaacgacttcccttggaggaagatgatgaggctcctgctaatgttcctactacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="27403" stop="28535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27703" g_stop="28235" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E339718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27703" e_stop="28235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTGACAGTGATGCTGGTGCAAGTTCTGGAGGCGGAGCTCCCAATCGCCGTCCTCGAGGCCGTCCGCCTGGATCTAAAAATAAGCCCAAGCCTCCAATCATCGTGACGAGAGATACGCCTAACGCACTCCGATCTCACGTGCTTGAAGTTTCGACCGATGTTGATATCATGGAAAGTATCTCCAATTACGCAAGGCGGAGAGGGAGAGGTGTTTGTATTCTTAGTGGTAGCGGCACAGTTACCAACGTCAACCTTCGTCAGCCTGCTGCAAGTGTAGTCACACTCCACGGACGTTTCGAAATACTTAGCCTCTCAGGTACGGTGCTTCCTCCGCCTGCACCGCCCGCCTCCAGTGGGATCTCTATATTTTTATCAGGTGGACAAGGACAAGTGGTTGGAGGATCCGTTGTAGGGCCTTTGATCGCATCAGGTCCAGTCGTCTTAATGGCTGCCTCTTTTGCTAATGCTGTATTTGAACGACTTCCCTTGGAGGAAGATGATGAGGCTCCTGCTAATGTTCCTACTACAC</genome_strand>
        <mrna_strand>TGAATCTGACAGTGATGCTGGTGCAAGTTCTGGAGGCGGAGCTCCCAATCGCCGTCCTCGAGGCCGTCCGCCTGGATCTAAAAATAAGCCCAAGCCTCCAATCATCGTGACGAGAGATACGCCTAACGCACTCCGATCTCACGTGCTTGAAGTTTCGACCGATGTTGATATCATGGAAAGTATCTCCAATTACGCAAGGCGGAGAGGGAGAGGTGTTTGTATTCTTAGTGGTAGCGGCACAGTTACCAACGTCAACCTTCGTCAGCCTGCTGCAAGTGTAGTCACACTCCACGGACGTTTCGAAATACTTAGCCTCTCAGGTACGGTGCTTCCTCCGCCTGCACCGCCCGCCTCCAGTGGGATCTCTATATTTTTATCAGGTGGACAAGGACAAGTGGTTGGAGGATCCGTTGTAGGGCCTTTGATCGCATCAGGTCCAGTCGTCTTAATGGCTGCCTCTTTTGCTAATGCTGTATTTGAACGACTTCCCTTGGAGGAAGATGATGAGGCTCCTGCTAATGTTCCTACTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353438" ref_strand="+" ref_description="SGN-E353438 [cTOS-15-J22]">
      <seq>ccgaaggaaatatggcttttgggaataattactcattctcagctgagttgcttggatggggtggcaatgctgcaaatgaaaggcccccattttagctagtatatacgatagtgatcatgagattttcaaattactcaaaatgttaagagatagctggtgcagaaaatagccagttgtggctaacaaacactacttttttttttctaattccaccaacggaagaaaacttgaaagcaaggtgagtttcatgtatgtatatatatatatatagtgtttgtacaagtactatataacaatgctcatcttcattgtctnnnnnannaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="28116" stop="29029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28416" g_stop="28735" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="341"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E353438" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28416" e_stop="28735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTAAACTT</genome_strand>
        <mrna_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTNNNNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351587" ref_strand="+" ref_description="SGN-E351587 [cTOS-12-N19]">
      <seq>ccgaaggaaatatggcttttgggaataattactcattctcagctgagttgcttggatggggtggcaatgctgcaaatgaaaggcccccattttagctagtatatacgatagtgatcatgagattttcaaattactcaaaatgttaagagatagctggtgcagaaaatagccagttgtggctaacaaacactacttttttttttctaattccaccaacggaagaaaacttgaaagcaaggtgagtttcatgtatgtatatatatatatatagtgtttgtacaagtactatataacaatgctcatcttcattgtctanaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="28116" stop="29032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28416" g_stop="28732" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="341"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E351587" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28416" e_stop="28732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTAAA</genome_strand>
        <mrna_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTANA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357639" ref_strand="+" ref_description="SGN-E357639 [cTOS-24-M5]">
      <seq>ccgaaggaaatatggcttttgggaataattactcattctcagctgagttgcttggatggggtggcaatgctgcaaatgaaaggcccccattttagctagtatatacgatagtgatcatgagattttcaaattactcaaaatgttaagagatagctggtgcagaaaatagccagttgtggctaacaaacactacttttttttttctaattccaccaacggaagaaaacttgaaagcaaggtgagtttcatgtatgtatatatatatatatagtgtttgtacaagtactatataacaatgctcatcttcattgtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="28116" stop="29030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28416" g_stop="28730" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E357639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28416" e_stop="28730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTA</genome_strand>
        <mrna_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351957" ref_strand="+" ref_description="SGN-E351957 [cTOS-8-P14]">
      <seq>ccgaaggaaatatggcttttgggaataattactcattctcagctgagttgcttggatggggtggcaatgctgcaaatgaaaggcccccattttagctagtatatacgatagtgatcatgagattttcaaattactcaaaatgttaagagatagctggtgcagaaaatagccagttgtggctaacaaacactacttttttttttctaattccaccaacggaagaaaacttgaaagcaaggtgagtttcatgtatgtatatatatatatatagtgtttgtacaagtactatataacaatgctcatcttcattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="28116" stop="29028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28416" g_stop="28728" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E351957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28416" e_stop="28728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTC</genome_strand>
        <mrna_strand>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370877" ref_strand="+" ref_description="SGN-E370877 [TUS-27-P7](-)">
      <seq>catacgccaaagcgtgagaagaatttcaaaagcattggttctataaaacacaagagaccaaatgaaatggaacatccttcgaaagtggcacgaacagaaacatctaagcagttggttacaacagttgttgatttgggacctccagctgattgggtaaaaatcaacgtgcgagaaacaaaagattgttttgagatctatgctctggtgcctgggcttttgagagaggaggtgcgcgttcaatctgatcctgctggccgtctggtcataactggtcagccggaacaacttgacaacccttggggtattaccgccttcaaaaaggtagttagcctgccagctagaatcgatccacttcagacttctgctgttgttaccctccatggacagctctttgttcgtgtaccatttgcgtagtgaaaatatttgactcaagagggagttttgaacgtttggatgaactttattgacaaagcatggatgctgatagttgaccaacattgatagtcagattgtgaatgctagggccgtagattgtggatctgtgtatgatgattagtttgatcaaattagttgttgacgtgttctgtgggttaaaattttaaagcaaaaggaggcatgtcctgctgcgacacatttttttactctgggaatttagctagaacttttttgtttctgagattaatatttatactcaattatttctagttagcatttgactgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="33160" stop="29583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32860" g_stop="32824" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32592" g_stop="32520" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="110" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32519" i_stop="32050" i_length="470">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32049" g_stop="31983" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="177" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31982" i_stop="31902" i_length="81">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31901" g_stop="31851" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="228" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31850" i_stop="30936" i_length="915">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30935" g_stop="30843" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="321" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30842" i_stop="30285" i_length="558">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30284" g_stop="29888" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="718" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="721" polyA_stop="731"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E370877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32860" e_stop="32824"/>
          <exon e_start="32592" e_stop="32520"/>
          <exon e_start="32049" e_stop="31983"/>
          <exon e_start="31901" e_stop="31851"/>
          <exon e_start="30935" e_stop="30843"/>
          <exon e_start="30284" e_stop="29888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTGGTAATTGTTATTTCTGGTTTTTTTTTACCAACCTTAACCTTTATATTTCTTTAGATTATTCGTCTCTGGTTATGATTTTTAAATTTGAAGTATCATATCCAGCAAATCGCTGGTTGGTTTGTGGGCCTAGTGGCTATCAAGGAGATGATAGTATGATACGGGACACGATAGAACGGATGATATCTGTTTCCTTAAGAAGTCAGATAATTTTGATCTTGTACTTGCATTCAGGTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCAGTTAAGTCGTTCTTTGTGTTGATTCTCTCATGTAACAATTTTCTTTGTCAAAATTCGTGCATCTTGTCATAAGGCGCTTGGTTTAAAAATCTTAGTTCAATGTAGCTACTCAAACTCCACAATTTGTAATGTTGGTTTCATCTTCATGCCTGTTTTTATTGTTTATTTTTTTCATCTGTAAAACCATTTCAATTTTCAATTTTGTCCTTGCAGCATCCAGACATGGTCATTTTTGAGTAGTATCATTTCACCTGATGTGTTGATCCCACATAGTTTCTTTTCTGGAAAAACTAATTATCATAGGCTTCTGAGATTTGATCTTTTAGTTTGAGATATATATGCCTTTACTGCTACTTTGGAGCCTGCGTTGTAAATTGATGTTGCTGTATGATTGAGCAGTATTGCTCTGCCATTTCTTTTCTTCTTTCCTCTTGCCCGGTTGTGAAAACTAAATTAATTTTATTTGCCAGGTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACAGTAAGTTCCTCTAAGATTCCAAGTATTTCTACTTTATGTTTACTCGCTCTTCCGTTGACCGTAATGTTTCTTCACAAACAGAAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAGGTATGTACCTCTCGCACTGCGTGTTCTGTTGCTATGTTTTATTGTACACAAATGCCCCCCCCCCCCGAACCCCCCACCCGCCCCCCACCCCCAGGTAAAAGTGGAAGTGTACAAATGTCATCTTTATGATAGTTTTCTAAAACATATGGATTTCAGAATTAGACTACATACCGTCTGTGTTATGTAAATCACATATCATTTGGAAGCACTTTAAAGGAATCCATGCGAACATTGTGCTTCTGTTTCATATGGGTGCTTGACCTTCACCGCAAGCTTTGTCTAGGTAAAAAAGCAAAGTGGCCTCCTTAAAATGATAAAACCCAGGGGAGGAAAATTGTTTATTTTGGAAAGGAATGAGGTTCTGAACAAAGACGGTAATCTATGCACTTTGGCCTATGCTATACACAAAATAAGGACTTATTTGTGAACCATATTTTTCATATCCTCCACACATCATATTTAAGCGAATGCTCTTTTTGTTGTTGCTATTTTTGGGCATAGAACTGTTTCCATTTTATCTGATTGCTTCAAGGGATGGATTAGCTAAGTGAGCGGGAAAGACACGTGCATATCATCGATAAAATCCTCGTTTTCACATTTGCAGTTGTGAAGTAGTGAAAGAAAATATTTTCAAGCTTCATTGAAGCTGGCCACCTTTTTAAAAGAGATTTTCCTTTATGCACCAGTAGTTTTGTAGAATATGATATATGGCTGATGCAATTCTTAGTGCTTACTATTCAAACTCTGACAAGTATAAGATGTTCATTTTCGTTAAATCATCCGTGTTATATTTCCGAGGACAAAAATGTAGTGGCTATTGATTGATCTGAGTCATTATTATTTAGCATATTCTTGCAGTGAATTCTGGTGTATATTGATCCAAAAGTTTTCATTCCTTATTTCTTGGGTGACCAGGTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAGGTAAGTTTGGTTATTTTATTGATCTATTTCAATATGAATTCTCGTTCTACAACTATCGTGATTTTGCATCATCTGTGCCTTTCTGCTGGAAGTTTAAAGACTGATGATATCTAAGGAAAAGAGAAACTAGTGCGTGTTTGTGCCAAGAAGACAGAAAAAAAGTTCTTTGTTGAAGTTCCTCCATTATTATTTCTTGGAAATGGAGTCTAATTTTTTTCAGAATAGGAGAGCTATTTACTTTTCTGAGATAACGGATATAATCTAAATGCTGTTCCAATTTATAAATGGCTTGCCAACTGGTGTGCATGTCATGTTCACAGTCCTTTTCTATTTTACTATCCCTTTTATTGGCATGGGATAAAATATTAAAGGTTATATAACCAACAAGTGCCCATGAGGTTTCTGGTTTGTTCAGTTGCTATATGTTTGGTCAAACCAAATAATATAATCTTGGTCTTCTGATATCCAAACTATACATAGAGATGTAAATACTTGAATTATTTTTCAATTCTGATGAAACAGAGAGTATCCATTTATGACTTGCATTGGTTTTCTCAGGTAGTTAGCCTGCCAGCTAGAATCGATCCACTTCAGACTTCTGCTGTTGTTACCCTCCATGGACAGCTCTTTGTTCGTGTACCATTTGCGTAGTGAAAATATTTGACTCAAGAGGGAGTTTTGAACGTTTGGATGAACTTTATTGACAAAGCATGGATGCTGATAGTTGACCAACATTGATAGTCAGATTGTGAATGCTAGGGCCGTAGATTGTGGATCTGTGTATGATGATTAGTTTGATCAAATTAGTTGTTGACGTGTTCTGTGGGTTAAAATTTTAAAGCAAAAGGAGGCATGTCCTGCTGCGACACATTTTTTTACTCTGGGAATTTAGCTAGAACTTTTTTGTTTCTGAGATTAATATTTATACTCAATTATTTCTAGTTAGCATTTGACT</genome_strand>
        <mrna_strand>CATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG.......................................................................................................................................................................................................................................GTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACA.................................................................................AAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTAGCCTGCCAGCTAGAATCGATCCACTTCAGACTTCTGCTGTTGTTACCCTCCATGGACAGCTCTTTGTTCGTGTACCATTTGCGTAGTGAAAATATTTGACTCAAGAGGGAGTTTTGAACGTTTGGATGAACTTTATTGACAAAGCATGGATGCTGATAGTTGACCAACATTGATAGTCAGATTGTGAATGCTAGGGCCGTAGATTGTGGATCTGTGTATGATGATTAGTTTGATCAAATTAGTTGTTGACGTGTTCTGTGGGTTAAAATTTTAAAGCAAAAGGAGGCATGTCCTGCTGCGACACATTTTTTTACTCTGGGAATTTAGCTAGAACTTTTTTGTTTCTGAGATTAATATTTATACTCAATTATTTCTAGTTAGCATTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370878" ref_strand="+" ref_description="SGN-E370878 [TUS-27-P7]">
      <seq>agctgtggagacaagtcggcgaatcgtttaatccccccaagacttgcacaactgtgtcctggacattccgcattttttatgagaaggctcttttagaatatgaaaggcataagatgcaaagcggcaagcttcaacttcctattgctgctcttcctgaagcaggtgttgataatgagggaaatggtaatcaaactcctggatcaggcagggcgagaagagatgctgctgctcgtgccatgcaaggatggcatgagcaacgtcttcttggttgtggcgaggttggggagccaattgtaaaggacaagaatgccaaacatacgccaaagcgtgagaagaatttcaaaagcattggttctataaaacacaagagaccaaatgaaatggaacatccttcgaaagtggcacgaacagaaacatctaagcagttggttacaacagttgttgatttgggacctccagctgattgggtaaaaatcaacgtgcgagaaacaaaagattgttttgagatctatgctctggtgcctgggcttttgagagaggaggtgcgcgttcaatctgatcctgctggccgtctggtcataactggtcagccggaacaacttgacaacccttggggtattaccgccttcaaaaaggtagttagcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="39706" stop="30534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39406" g_stop="39367" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39366" i_stop="35364" i_length="4003">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35363" g_stop="35318" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="86" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35317" i_stop="34552" i_length="766">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34551" g_stop="34462" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="176" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34461" i_stop="33103" i_length="1359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33102" g_stop="32980" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32979" i_stop="32876" i_length="104">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32875" g_stop="32824" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="351" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32592" g_stop="32520" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="424" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32519" i_stop="32050" i_length="470">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32049" g_stop="31983" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="491" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="31982" i_stop="31902" i_length="81">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="31901" g_stop="31851" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="542" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="31850" i_stop="30936" i_length="915">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="30935" g_stop="30843" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="635" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E370878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39406" e_stop="39367"/>
          <exon e_start="35363" e_stop="35318"/>
          <exon e_start="34551" e_stop="34462"/>
          <exon e_start="33102" e_stop="32980"/>
          <exon e_start="32875" e_stop="32824"/>
          <exon e_start="32592" e_stop="32520"/>
          <exon e_start="32049" e_stop="31983"/>
          <exon e_start="31901" e_stop="31851"/>
          <exon e_start="30935" e_stop="30843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAAGTAAGCATCTAAATTTAATGAATCCTTTTTCTTTATGGAGCTTTGAACTTAAAGCATGAATCTTCCAATAATACAATGAAAAATGTAGCTCTACCTTTTCAAATGTCAAGTTCTCCCGTGTATGTAATGGAGATGAGGCATTGAAAATTGCAGACATTTTATTTATATTGCAAATGAGATACATATTGTGGCATCCATAATTATAATAATCGGCTGAAGATTATGTATGAGGTATAATTCTGGAGAGCGACCTTCGTGCATGGTATGGAAATAGAGGCTAATTTAGTAACAAGTATAATGATTTACAATTTATAAAGAAAGGTCTCGTATGCAAGGATATAGAACGTCAAGAATTGGGACCAAAAGGGCCCTTTTGCTTGTTTATTTTGGAAAGCAGGGTGGTGCAGTTCAGTCAGATTGTGTAGTCACCGTTGATGCTGCTTTTATAGTGTCAGTGTAGCTGAAGTCATCTAACATTCTATTGAGGGGCCTGGGTTATTCGTAGGACTTACTTTAGGTAGCTATTTTTGTTATTTGTTTGTTCGGACTTATTTTATTTTATTTTATTTATTTCCTTCATTTTAATATAGAGGTACTAGGAGTAACAGATTATACAAAATCAGAATACTTCGATTCTTTTTCTTATAAAATAGAACTAGATTCATCTTTCAAATTATTCAACCTTTGTTTTTCTTTTTGATAAGTAGGGGTCAAAATAGGAATGTAAGGGCGGGGAATGATTCTAATTGTCAGAAGAAGGGAGCAAGACTGCTCTTACAGGTCCTACGACGAAAGAGACATTCACTGGAACATCAAAAAACAACCCCGTTTCAAAGTTAAATCAACAACTGAGTGAGTTGAGTTTTGTGGGGGGCTTGGGGTAGATGTGCGGGTGCTAATGCAAGGAGTGATGTCGTTGAGTGGTTTGAGTGGGGATGGGGAGGACTCCACTTTTTGCTCCCCTCAACCACTAGTAGGTATTATGTAAGGAGGGAGGAAGATGTCTTAATGGATGGGGGATAAATTTCTCATGTTTGGGGAATTTGTAGGACTAAGATACTGCAGCGGATGTTTTTGGTTAAGTGTACCATCAGTGTTAAAGACTTGATAGTATAGTTATAGCCCAAATATGGATGGATGGAGGATAAAGTGATGGAATTACTGAATGAAATTGGAAAAGAATTTAGGGGTGTTTGGTTAGGTTATTGGAGAGTGGGAGAGGAACGAGGGATGATATCTCAAGCAGGGGTGGGTGATATTGTGGTGTATGAGGGGGCACAAGAGGATTGGGATGGGTTGTAAGGAGGATGAGTTTAAGGGAGCGGGAAAGGGTAAATTTGTTGTCAATAAATAGTAAGATCATTACGTGGAACATGAGGGGGATGAATGACCCAAACAAAAGGACCATCAAGGTGGGGATTAAGAAATGAGGAGCAGACTTGGTATGTTTCCAAGATACTAAGATGGAAGCAGTTACCAAGAGAGATGGGTGAAACATGATTTTATCCCGACAAGAGAGAGTGCAGGGATATTTTATTACTATGAGATGAGAAAAAATTCGAGGTCACGGAAACAAAGAAAGGGGAGTTTATGATAGCAGCTCGTGTTAGGGATATGGAAATCTGGAAGGTGTGGGAATTTGGAGGAGTGTATGGTCTGATGTGGGAAGGAACAAAAAGGGGGTTTTGGGAGGAGATGGCTCTTTCTTTAGTGGAATGGGAAATTCCATAGGTTCTTGGAGAGATATTAATACTATTAAGTTCCAGGAAGAAAGGTCAGAGTGTAGATCGGTGACTAGGGCTATGGATGAATTCTCGAAGTTTATAAACAATTATTTTCTTATTGATCTTCTTTTGGCAGGAGCATGGTTTGAAGTGGGGGATTCAATATCACTCTCTATACTTGATAGATTCTTAGTGTGCCATTCAGGAGGAGATAGTTCAAAATGTGGCACAAGTTCCTTTGCCTAGACTAATTTCGGATCATTTTTCCAATTATGTTAGATGAAAGTAGAAGCAGCCACATGAAACCCCCTTCTAGATTCTAGAACACGTACTGAAAACAATAAATTTTGGAGACAGAGTGACATGATGGGTTGCACATTTACCCCATCACAGGAAAACCTTCATTTTGCCTAGCAAAAATCAAGAACCAACACCAAACTTTTAGAAAAATAGAACCGTTACAGAATCGAAGAACCGTATCCATAGAACTGAAGAATTCAATCTTTTTTTTTTTTTACATTTATGCCCAGCCTTAGTTCGCACTATGAAGAGAGGTGATAGGGAAAAAGATGGAATTATGGAAGGGTGGTGGAGAGGTAGAAACATTACTTTTTTTTTTTGAGAATGTAACGATTTGTATTCTGTTTCCACAAAAACAGAAACTTGCCACGACAAGTTACAGGTTTCCTAATTACAATTGAGGAGGAGTATCTAGAAGATCTTCAACTCTTTTAACAAAACAATAATCCTAAGACATCCCTTATTGATTCTAGATCTTCCCTATACTCCTGTTTACACCAAAAATGTAAAATGGAACAAATCAAAACACTTCATCTTCATCTTCTGGATATTGTTGCTCTTGTTCTGATGGCACCTGAGGTTACTACTCCTTTTGGGTGTGGGCTTTGTGGAAATATCTTGCAGGGGTGTGAGGAATTTAGTGGTAACAAATTCAGAAGATACTAGAAGGAAATGTTCGTTGGGATCTTCAGTTGAGGAGGAATCTTCAAGATCGAGAGAAGGAGAAATCGTGAGAATTGCTTGAGACGCTGTACAAACAAACTCCTTCCTTAGAAATATGTTTCTTGGAGATGAAAGTTAGGGAATGGTGTTTGCTTTGCAGTAAAGTCTCTTTATGCTAAGATGCTCACAAGAGACGAGACAATTATCCCACACGATACAATATGGATTCCATGGATTCCCAGTGCACTAAGAAAGGTATTTTTTTTTGGCAACCAGAGGAGTGATTTTGGCAGCCGAGAATATGAGGAAATGGAGGATTAGATATGTTAGTTGGTGCTTTATGTGCAAAAACTCGAGAGAGAGGATATGGATCACCTTCTACTAGATTGTCAGGTTGCTTTAAGGTTATGGTGAGTGATTCTGAGATTGTTTGGACTACTGTGGTACAGAGCATGAGACATCACTCCATTAGCTCCTATCTAGGTAGTGTGGAGAGAGAAATAAGAGAGCTTTTGTGTAGCTTCTCTTTTTTGGTTTATACTACTTGTATACAGGAGTTTTCCCCTATTGTTAATGAAATTATTGCTTCCTTGATTAATAAAAACAACACCAAGTTGACTGTCAATTAAGTAACTTCTTATCTTATTGATATGGCACTTTTCACATTAATAAGACAAACAAACTTCGATTGTTTGTTCCCATGCCAAAAAGATCTTTCTAAGTTTATCCATTTGCTTTAGGACGAAAGCTGGGCAGGAGAAAGGCATAGTGTTCCTTTTCTATAAAATATTACTTTTGAAACATGTGGTACATGAGGATACCCCAACCAAACACATATATAACTTATCAAAAGGAAAAAGCACAGAAACACAAAATACAACGAATTGTTCTCTTTTTGATAAAACACAGAACGACATGTTCTAGTTAGACAGCAGAAGGTGTGGTCTAATCAAGAGAACAACAACTCTGTATATGTGCCTCTTCAGTGTCACCTGATCGATATCCGTCTTGAAGTCTAATATTTGGTAAACATGTATTGGTTCTCAACAATTAGAGATGTTGGGGTGTTACTATGTAAGAATGCCATGTAGTTAGACCCGGAAAGTCTGATGTCTCCAAAAAGAACACTGAGAGCTAATAAGGATAAAATGAGAGGTGGCAATGACCAGAACCTGTTTCGATACTCAAACAAGATGAGAAGTTACTTGACTAACAGTCAACTTAAACAGAGAACAAAACAGTAGCTTCGAAGTTCTTATTGTAGTATCTTTAATTTTGATTTTTTCCCTTTTAGGATAATCATTCTTCTCTTTCAGGACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAGGTAATAAACCCAAGAACCCATTGGTAGCTATTAGTATATTTTTACCATTTTTGTCCATTAATTGTAGCTTGTAAAATGATTTTTTGGCACCTTAAATAATCTTTCCAATGTGGATTGTTTGTGAAGAGCTTGGTAAAATTACTCAGTGGCAGTAATGATATTCTTTTTTCCTGTTGATGGTCTGTAAATGCCGCTACCTCCCTCCACAATATTGTTTTGCTTCTCGGGCCTTCTTTAAACGGAAACCTTTACTATTGACTCTATTATTTTTAATATTGCTCTGCATCAAGAGTTACCCAGAATCCAATTTCATTCTTATATAATTTTTTTGAAATTAGTAATGTTAATTTCATTCTTATATAATTTCTAACTGTTAATAACCTTTTCATTTCGGTTTGGACTCACTTATCTTTAGTCTATTATCCAACTTTAAACTAATGATAAGATGCATGCTTACTCAAAGTAATAGAGGCAAAATGGAGAAATAATGTGGTATATTATTTCCTATTTCTATTTATGTGGAGAATAGTTGGTGATAAGGCAGCTGAATCTTCTTTGGCTTCCTTGCAATTTAATCACTAGCTAGCATATCACCATTCTACTGTCTAGCCAATTTAAACCGATTTTAAAGCCTAATTTAACAACACCTTATGCTCTGCATATTTGGTTGTTTTTCTTCTCATAGTTCTATTATCTGGAAAACCTATTCATCCTTACTTTAACTTTCTATACCTTCTTTTGTTATGCAATGTTTTCTGCATTATAGGCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAGGTAAGCTTGAGTTTACATTCAGCTCCTCATTTGTACTAACTATGTATCTTCTAATAATTGAAACACTAGTCAAGTCAACTGGCAATTGACTCTATCGCCAAAAAAAAACACAGCACCACTTAAGCACTAATCTGTACAAAGATTGAATGACTACAGATTTTATCTATTGGAAGGACATATGGTTAAGCCATGTATTAAAATGGTACATTTTAAAATTTCACCACAAAGCCCAAAAGCTCTAGCCTTTTGAACTTTATTCAAGAAATGCCGTTTTTCCTTCAATACATCCAGAATTTGCTTTTCTCACGTTGTCCTCCGTCCGGCCTGGAGCTGCTTTTCATTCTTTGCCTTGCAAACTGCTAATGGCCTATTTTAAGCTTCTTGGCACTACCCATTTTACTCCAAAACGGCAAGTAAATATGAACCAAGTCATAGGATGCAAAATTTTTAAGTTAGGTACATTGGGACTTCTTCTCTTGAAGATTCACACATGTAACATTACTACGGATTGCTAATGGAGCCTCTTTTTTTTTTCTCCTTCTACTCTAAAGATAAATCTGGTTGGTTTTTTAGTTGATAGCTGAGAATATAGATTGCAGTATCAAAGTGAATACATGTTGGCTTGTGATCAACAGGGGAATTAGAAAGCACATTTTTTGGAGTGACATTAATGTCTAGGCATTAACATACCATACTGAGATGTTTACTTGTTTTATTTTATTAAATCTTGAGCCAATAGAAAATGCAATATTTTGGAATGTATGAAATACAATTATGAAGTATTAAGATATAAATTCCTTTGCCCCAGCAACATCATGCCCCACAGCTTAATGTCAAACTCACTAGAAAGATCACAGGACCTGTATGAAAACAAATACTTTTCCTTTTATTATCTAACTTGAATATTAAGTAATTTTTTTCCAATTTCCTAGAAAGAGCATCTTGCCTAAGCTATTCATTATTCCCATACATAATTTCTTTAAAGGTCTTACTCTTGGTATAACTATCTATTTTATTCTCTACTAATTTATTCCACGTATTTGTGACTGAAGAAGTTTTTGAAGTTTTGATGTCTTTAGTTCTCAGCAGCTTTTGATAATGTCTGCTTCACCCCTAACCCCCAAAAACGCTTCGGTGAGTCTTATAAATAGATTTGTGTCTCGAGTTCTCTACATCTTTTAATAATTCTGCTTCACCCTTACCCCCTAAAAATGCTTTGGTGAGAGTTATAAATAGAGTCTTGTCTGCTTTGATGGACATAGGTTCATGTAGATCATCTTTCCTTTATATTAATCAACTAGTTGACCTCTTAGGCATATAAAGATGTATAAAATAAACCATCTTGAAATAATTCTGTAGGGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAGGTCTGCTGAAATTATAGAACTCAACAAACATTTTTTGGTCGTGTTTACCTTTGACCAATGTCTCTTGACATGTATTACTATTTTTGTCATGGATCTCTTGATAGGACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTGGTAATTGTTATTTCTGGTTTTTTTTTACCAACCTTAACCTTTATATTTCTTTAGATTATTCGTCTCTGGTTATGATTTTTAAATTTGAAGTATCATATCCAGCAAATCGCTGGTTGGTTTGTGGGCCTAGTGGCTATCAAGGAGATGATAGTATGATACGGGACACGATAGAACGGATGATATCTGTTTCCTTAAGAAGTCAGATAATTTTGATCTTGTACTTGCATTCAGGTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCAGTTAAGTCGTTCTTTGTGTTGATTCTCTCATGTAACAATTTTCTTTGTCAAAATTCGTGCATCTTGTCATAAGGCGCTTGGTTTAAAAATCTTAGTTCAATGTAGCTACTCAAACTCCACAATTTGTAATGTTGGTTTCATCTTCATGCCTGTTTTTATTGTTTATTTTTTTCATCTGTAAAACCATTTCAATTTTCAATTTTGTCCTTGCAGCATCCAGACATGGTCATTTTTGAGTAGTATCATTTCACCTGATGTGTTGATCCCACATAGTTTCTTTTCTGGAAAAACTAATTATCATAGGCTTCTGAGATTTGATCTTTTAGTTTGAGATATATATGCCTTTACTGCTACTTTGGAGCCTGCGTTGTAAATTGATGTTGCTGTATGATTGAGCAGTATTGCTCTGCCATTTCTTTTCTTCTTTCCTCTTGCCCGGTTGTGAAAACTAAATTAATTTTATTTGCCAGGTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACAGTAAGTTCCTCTAAGATTCCAAGTATTTCTACTTTATGTTTACTCGCTCTTCCGTTGACCGTAATGTTTCTTCACAAACAGAAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAGGTATGTACCTCTCGCACTGCGTGTTCTGTTGCTATGTTTTATTGTACACAAATGCCCCCCCCCCCCGAACCCCCCACCCGCCCCCCACCCCCAGGTAAAAGTGGAAGTGTACAAATGTCATCTTTATGATAGTTTTCTAAAACATATGGATTTCAGAATTAGACTACATACCGTCTGTGTTATGTAAATCACATATCATTTGGAAGCACTTTAAAGGAATCCATGCGAACATTGTGCTTCTGTTTCATATGGGTGCTTGACCTTCACCGCAAGCTTTGTCTAGGTAAAAAAGCAAAGTGGCCTCCTTAAAATGATAAAACCCAGGGGAGGAAAATTGTTTATTTTGGAAAGGAATGAGGTTCTGAACAAAGACGGTAATCTATGCACTTTGGCCTATGCTATACACAAAATAAGGACTTATTTGTGAACCATATTTTTCATATCCTCCACACATCATATTTAAGCGAATGCTCTTTTTGTTGTTGCTATTTTTGGGCATAGAACTGTTTCCATTTTATCTGATTGCTTCAAGGGATGGATTAGCTAAGTGAGCGGGAAAGACACGTGCATATCATCGATAAAATCCTCGTTTTCACATTTGCAGTTGTGAAGTAGTGAAAGAAAATATTTTCAAGCTTCATTGAAGCTGGCCACCTTTTTAAAAGAGATTTTCCTTTATGCACCAGTAGTTTTGTAGAATATGATATATGGCTGATGCAATTCTTAGTGCTTACTATTCAAACTCTGACAAGTATAAGATGTTCATTTTCGTTAAATCATCCGTGTTATATTTCCGAGGACAAAAATGTAGTGGCTATTGATTGATCTGAGTCATTATTATTTAGCATATTCTTGCAGTGAATTCTGGTGTATATTGATCCAAAAGTTTTCATTCCTTATTTCTTGGGTGACCAGGTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAG</genome_strand>
        <mrna_strand>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAG........................................................................................................GACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG.......................................................................................................................................................................................................................................GTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACA.................................................................................AAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271381" ref_strand="+" ref_description="SGN-E271381 [cLEM-5-O23]">
      <seq>agctgtggagacaagtcggcgaatcgtttaatccccccaagacttgcacaactgtgtcctggacattccgcattttttatgagaaggctcttttagaatatgaaaggcataagatgcaaagcggcaagcttcaacttcctattgctgctcttcctgaagcaggtgttgataatgagggaaatggtaatcaaactcctggatcaggcagggcgagaagagatgctgctgctcgtgccatgcaaggatggcatgagcaacgtcttcttggttgtggcgaggttggggagccaattgtaaaggacaagaatgccaaacatacgccaaagcgtgagaagaatttcaaaagcattggttctattaaacacaagagaccaaatgaaatggaacatccttcgaaagtggcacgaacagaaacatctaagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="39706" stop="32218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39406" g_stop="39367" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39366" i_stop="35364" i_length="4003">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35363" g_stop="35318" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="86" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35317" i_stop="34552" i_length="766">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34551" g_stop="34462" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="176" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34461" i_stop="33103" i_length="1359">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33102" g_stop="32980" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="299" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32979" i_stop="32876" i_length="104">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32875" g_stop="32824" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="351" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32592" g_stop="32518" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="426" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E271381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39406" e_stop="39367"/>
          <exon e_start="35363" e_stop="35318"/>
          <exon e_start="34551" e_stop="34462"/>
          <exon e_start="33102" e_stop="32980"/>
          <exon e_start="32875" e_stop="32824"/>
          <exon e_start="32592" e_stop="32518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAAGTAAGCATCTAAATTTAATGAATCCTTTTTCTTTATGGAGCTTTGAACTTAAAGCATGAATCTTCCAATAATACAATGAAAAATGTAGCTCTACCTTTTCAAATGTCAAGTTCTCCCGTGTATGTAATGGAGATGAGGCATTGAAAATTGCAGACATTTTATTTATATTGCAAATGAGATACATATTGTGGCATCCATAATTATAATAATCGGCTGAAGATTATGTATGAGGTATAATTCTGGAGAGCGACCTTCGTGCATGGTATGGAAATAGAGGCTAATTTAGTAACAAGTATAATGATTTACAATTTATAAAGAAAGGTCTCGTATGCAAGGATATAGAACGTCAAGAATTGGGACCAAAAGGGCCCTTTTGCTTGTTTATTTTGGAAAGCAGGGTGGTGCAGTTCAGTCAGATTGTGTAGTCACCGTTGATGCTGCTTTTATAGTGTCAGTGTAGCTGAAGTCATCTAACATTCTATTGAGGGGCCTGGGTTATTCGTAGGACTTACTTTAGGTAGCTATTTTTGTTATTTGTTTGTTCGGACTTATTTTATTTTATTTTATTTATTTCCTTCATTTTAATATAGAGGTACTAGGAGTAACAGATTATACAAAATCAGAATACTTCGATTCTTTTTCTTATAAAATAGAACTAGATTCATCTTTCAAATTATTCAACCTTTGTTTTTCTTTTTGATAAGTAGGGGTCAAAATAGGAATGTAAGGGCGGGGAATGATTCTAATTGTCAGAAGAAGGGAGCAAGACTGCTCTTACAGGTCCTACGACGAAAGAGACATTCACTGGAACATCAAAAAACAACCCCGTTTCAAAGTTAAATCAACAACTGAGTGAGTTGAGTTTTGTGGGGGGCTTGGGGTAGATGTGCGGGTGCTAATGCAAGGAGTGATGTCGTTGAGTGGTTTGAGTGGGGATGGGGAGGACTCCACTTTTTGCTCCCCTCAACCACTAGTAGGTATTATGTAAGGAGGGAGGAAGATGTCTTAATGGATGGGGGATAAATTTCTCATGTTTGGGGAATTTGTAGGACTAAGATACTGCAGCGGATGTTTTTGGTTAAGTGTACCATCAGTGTTAAAGACTTGATAGTATAGTTATAGCCCAAATATGGATGGATGGAGGATAAAGTGATGGAATTACTGAATGAAATTGGAAAAGAATTTAGGGGTGTTTGGTTAGGTTATTGGAGAGTGGGAGAGGAACGAGGGATGATATCTCAAGCAGGGGTGGGTGATATTGTGGTGTATGAGGGGGCACAAGAGGATTGGGATGGGTTGTAAGGAGGATGAGTTTAAGGGAGCGGGAAAGGGTAAATTTGTTGTCAATAAATAGTAAGATCATTACGTGGAACATGAGGGGGATGAATGACCCAAACAAAAGGACCATCAAGGTGGGGATTAAGAAATGAGGAGCAGACTTGGTATGTTTCCAAGATACTAAGATGGAAGCAGTTACCAAGAGAGATGGGTGAAACATGATTTTATCCCGACAAGAGAGAGTGCAGGGATATTTTATTACTATGAGATGAGAAAAAATTCGAGGTCACGGAAACAAAGAAAGGGGAGTTTATGATAGCAGCTCGTGTTAGGGATATGGAAATCTGGAAGGTGTGGGAATTTGGAGGAGTGTATGGTCTGATGTGGGAAGGAACAAAAAGGGGGTTTTGGGAGGAGATGGCTCTTTCTTTAGTGGAATGGGAAATTCCATAGGTTCTTGGAGAGATATTAATACTATTAAGTTCCAGGAAGAAAGGTCAGAGTGTAGATCGGTGACTAGGGCTATGGATGAATTCTCGAAGTTTATAAACAATTATTTTCTTATTGATCTTCTTTTGGCAGGAGCATGGTTTGAAGTGGGGGATTCAATATCACTCTCTATACTTGATAGATTCTTAGTGTGCCATTCAGGAGGAGATAGTTCAAAATGTGGCACAAGTTCCTTTGCCTAGACTAATTTCGGATCATTTTTCCAATTATGTTAGATGAAAGTAGAAGCAGCCACATGAAACCCCCTTCTAGATTCTAGAACACGTACTGAAAACAATAAATTTTGGAGACAGAGTGACATGATGGGTTGCACATTTACCCCATCACAGGAAAACCTTCATTTTGCCTAGCAAAAATCAAGAACCAACACCAAACTTTTAGAAAAATAGAACCGTTACAGAATCGAAGAACCGTATCCATAGAACTGAAGAATTCAATCTTTTTTTTTTTTTACATTTATGCCCAGCCTTAGTTCGCACTATGAAGAGAGGTGATAGGGAAAAAGATGGAATTATGGAAGGGTGGTGGAGAGGTAGAAACATTACTTTTTTTTTTTGAGAATGTAACGATTTGTATTCTGTTTCCACAAAAACAGAAACTTGCCACGACAAGTTACAGGTTTCCTAATTACAATTGAGGAGGAGTATCTAGAAGATCTTCAACTCTTTTAACAAAACAATAATCCTAAGACATCCCTTATTGATTCTAGATCTTCCCTATACTCCTGTTTACACCAAAAATGTAAAATGGAACAAATCAAAACACTTCATCTTCATCTTCTGGATATTGTTGCTCTTGTTCTGATGGCACCTGAGGTTACTACTCCTTTTGGGTGTGGGCTTTGTGGAAATATCTTGCAGGGGTGTGAGGAATTTAGTGGTAACAAATTCAGAAGATACTAGAAGGAAATGTTCGTTGGGATCTTCAGTTGAGGAGGAATCTTCAAGATCGAGAGAAGGAGAAATCGTGAGAATTGCTTGAGACGCTGTACAAACAAACTCCTTCCTTAGAAATATGTTTCTTGGAGATGAAAGTTAGGGAATGGTGTTTGCTTTGCAGTAAAGTCTCTTTATGCTAAGATGCTCACAAGAGACGAGACAATTATCCCACACGATACAATATGGATTCCATGGATTCCCAGTGCACTAAGAAAGGTATTTTTTTTTGGCAACCAGAGGAGTGATTTTGGCAGCCGAGAATATGAGGAAATGGAGGATTAGATATGTTAGTTGGTGCTTTATGTGCAAAAACTCGAGAGAGAGGATATGGATCACCTTCTACTAGATTGTCAGGTTGCTTTAAGGTTATGGTGAGTGATTCTGAGATTGTTTGGACTACTGTGGTACAGAGCATGAGACATCACTCCATTAGCTCCTATCTAGGTAGTGTGGAGAGAGAAATAAGAGAGCTTTTGTGTAGCTTCTCTTTTTTGGTTTATACTACTTGTATACAGGAGTTTTCCCCTATTGTTAATGAAATTATTGCTTCCTTGATTAATAAAAACAACACCAAGTTGACTGTCAATTAAGTAACTTCTTATCTTATTGATATGGCACTTTTCACATTAATAAGACAAACAAACTTCGATTGTTTGTTCCCATGCCAAAAAGATCTTTCTAAGTTTATCCATTTGCTTTAGGACGAAAGCTGGGCAGGAGAAAGGCATAGTGTTCCTTTTCTATAAAATATTACTTTTGAAACATGTGGTACATGAGGATACCCCAACCAAACACATATATAACTTATCAAAAGGAAAAAGCACAGAAACACAAAATACAACGAATTGTTCTCTTTTTGATAAAACACAGAACGACATGTTCTAGTTAGACAGCAGAAGGTGTGGTCTAATCAAGAGAACAACAACTCTGTATATGTGCCTCTTCAGTGTCACCTGATCGATATCCGTCTTGAAGTCTAATATTTGGTAAACATGTATTGGTTCTCAACAATTAGAGATGTTGGGGTGTTACTATGTAAGAATGCCATGTAGTTAGACCCGGAAAGTCTGATGTCTCCAAAAAGAACACTGAGAGCTAATAAGGATAAAATGAGAGGTGGCAATGACCAGAACCTGTTTCGATACTCAAACAAGATGAGAAGTTACTTGACTAACAGTCAACTTAAACAGAGAACAAAACAGTAGCTTCGAAGTTCTTATTGTAGTATCTTTAATTTTGATTTTTTCCCTTTTAGGATAATCATTCTTCTCTTTCAGGACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAGGTAATAAACCCAAGAACCCATTGGTAGCTATTAGTATATTTTTACCATTTTTGTCCATTAATTGTAGCTTGTAAAATGATTTTTTGGCACCTTAAATAATCTTTCCAATGTGGATTGTTTGTGAAGAGCTTGGTAAAATTACTCAGTGGCAGTAATGATATTCTTTTTTCCTGTTGATGGTCTGTAAATGCCGCTACCTCCCTCCACAATATTGTTTTGCTTCTCGGGCCTTCTTTAAACGGAAACCTTTACTATTGACTCTATTATTTTTAATATTGCTCTGCATCAAGAGTTACCCAGAATCCAATTTCATTCTTATATAATTTTTTTGAAATTAGTAATGTTAATTTCATTCTTATATAATTTCTAACTGTTAATAACCTTTTCATTTCGGTTTGGACTCACTTATCTTTAGTCTATTATCCAACTTTAAACTAATGATAAGATGCATGCTTACTCAAAGTAATAGAGGCAAAATGGAGAAATAATGTGGTATATTATTTCCTATTTCTATTTATGTGGAGAATAGTTGGTGATAAGGCAGCTGAATCTTCTTTGGCTTCCTTGCAATTTAATCACTAGCTAGCATATCACCATTCTACTGTCTAGCCAATTTAAACCGATTTTAAAGCCTAATTTAACAACACCTTATGCTCTGCATATTTGGTTGTTTTTCTTCTCATAGTTCTATTATCTGGAAAACCTATTCATCCTTACTTTAACTTTCTATACCTTCTTTTGTTATGCAATGTTTTCTGCATTATAGGCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAGGTAAGCTTGAGTTTACATTCAGCTCCTCATTTGTACTAACTATGTATCTTCTAATAATTGAAACACTAGTCAAGTCAACTGGCAATTGACTCTATCGCCAAAAAAAAACACAGCACCACTTAAGCACTAATCTGTACAAAGATTGAATGACTACAGATTTTATCTATTGGAAGGACATATGGTTAAGCCATGTATTAAAATGGTACATTTTAAAATTTCACCACAAAGCCCAAAAGCTCTAGCCTTTTGAACTTTATTCAAGAAATGCCGTTTTTCCTTCAATACATCCAGAATTTGCTTTTCTCACGTTGTCCTCCGTCCGGCCTGGAGCTGCTTTTCATTCTTTGCCTTGCAAACTGCTAATGGCCTATTTTAAGCTTCTTGGCACTACCCATTTTACTCCAAAACGGCAAGTAAATATGAACCAAGTCATAGGATGCAAAATTTTTAAGTTAGGTACATTGGGACTTCTTCTCTTGAAGATTCACACATGTAACATTACTACGGATTGCTAATGGAGCCTCTTTTTTTTTTCTCCTTCTACTCTAAAGATAAATCTGGTTGGTTTTTTAGTTGATAGCTGAGAATATAGATTGCAGTATCAAAGTGAATACATGTTGGCTTGTGATCAACAGGGGAATTAGAAAGCACATTTTTTGGAGTGACATTAATGTCTAGGCATTAACATACCATACTGAGATGTTTACTTGTTTTATTTTATTAAATCTTGAGCCAATAGAAAATGCAATATTTTGGAATGTATGAAATACAATTATGAAGTATTAAGATATAAATTCCTTTGCCCCAGCAACATCATGCCCCACAGCTTAATGTCAAACTCACTAGAAAGATCACAGGACCTGTATGAAAACAAATACTTTTCCTTTTATTATCTAACTTGAATATTAAGTAATTTTTTTCCAATTTCCTAGAAAGAGCATCTTGCCTAAGCTATTCATTATTCCCATACATAATTTCTTTAAAGGTCTTACTCTTGGTATAACTATCTATTTTATTCTCTACTAATTTATTCCACGTATTTGTGACTGAAGAAGTTTTTGAAGTTTTGATGTCTTTAGTTCTCAGCAGCTTTTGATAATGTCTGCTTCACCCCTAACCCCCAAAAACGCTTCGGTGAGTCTTATAAATAGATTTGTGTCTCGAGTTCTCTACATCTTTTAATAATTCTGCTTCACCCTTACCCCCTAAAAATGCTTTGGTGAGAGTTATAAATAGAGTCTTGTCTGCTTTGATGGACATAGGTTCATGTAGATCATCTTTCCTTTATATTAATCAACTAGTTGACCTCTTAGGCATATAAAGATGTATAAAATAAACCATCTTGAAATAATTCTGTAGGGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAGGTCTGCTGAAATTATAGAACTCAACAAACATTTTTTGGTCGTGTTTACCTTTGACCAATGTCTCTTGACATGTATTACTATTTTTGTCATGGATCTCTTGATAGGACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTGGTAATTGTTATTTCTGGTTTTTTTTTACCAACCTTAACCTTTATATTTCTTTAGATTATTCGTCTCTGGTTATGATTTTTAAATTTGAAGTATCATATCCAGCAAATCGCTGGTTGGTTTGTGGGCCTAGTGGCTATCAAGGAGATGATAGTATGATACGGGACACGATAGAACGGATGATATCTGTTTCCTTAAGAAGTCAGATAATTTTGATCTTGTACTTGCATTCAGGTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCAGT</genome_strand>
        <mrna_strand>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAG........................................................................................................GACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG.......................................................................................................................................................................................................................................GTTCTATTAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257298" ref_strand="-" ref_description="SGN-E257298 [cLEG-46-N3]">
      <seq>agataatgtcacaaaataacaacttgtgctacttggtcacatcactgaatgtaatccattaagcatctttgacttgttgaaatgattgcagggatggagccataccacttctaacactgatcatgggcggtaaccttttgaagggtttgaccggttcagggattcagaaatccctacttcttggcattattgttgtcagatacattgccctgcctcttattggtatcgttgtagtcaaaggagctattcgcttgggcttggtgcaacatgatccattatatcaatttgtgcttttacttcaatttgcacttccaccagcaatgaacattggcaccataacacagttatttggagctggtgagagtgagtgttcagtgattatgttttgggcttatgcattggcttcaatatcgcttactctgtggacaacattcttcatgtggcttgtatcttaacttcatttttttttaatatcagacataatcaagttgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="48212" stop="51531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48512" g_stop="48841" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48842" i_stop="49097" i_length="256">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49098" g_stop="49262" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="495" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49263" i_stop="49953" i_length="691">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49954" g_stop="49966" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="508" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E257298" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257298" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48512" e_stop="48841"/>
          <exon e_start="49098" e_stop="49262"/>
          <exon e_start="49954" e_stop="49966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAATGTCACAAAATAACAACTTGTGCTACTTGGTCACATCACTGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTGGTATGACATTCAGCTAGTTATTATCTTTCCTGTTCTTTTCGTGTTTTTTTTTGGCCCGACCACAATTTCAAAACCGTAAAGATCCCTATGTTTGCTCTGCATTAATTTCAAAACCGCAAAAAAACCATATGTTTGCTCTGCATTCAATGGACAAGACAATTGGTTTTGACAGTAACCACTTGTAGCATTAAAACAATGTGTCTGTTGCATTACTAAGTCTTAGATGAGATGACACAATTCTTGTTTCACTTGGCAGGCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAAACAAGTTGACATGTCTACCAGTGTACTATGATAACGAAAATCAGGAACTAAAAGTTTAACCTTGTTAGATGTGGTCATTAACATGCTCTAAGTTCAATGAAGATTCTTTAGTGTCGATTCTTCAAGCAATGCTCATTTTGCAAGGAAAAGTTTGTTTTGGAGCCTAGATGACGAGCGCACGACATGTTTCAAGTGTTGACAACATTATTAATAACATGACCCGCTAACACAGTTGCTTCTCTAAAGCAAGCCATTCTTGGAGCGGAGAAGACATGTTGTAAGATAATAATCAAAGAAAAATAGAAGTAGGCACAAGGCACTTTGAGGACAATTTACAGCAAAACACCCCAAGTAATGTGATAGCAAAATATATCATTGCACATAGTTGTGCTTACATTGATCCAGTTGATATTAAAAGAAAAGGTTTAGAAATGAAACACATCATCATACTAATTGATACTACTATTAAAAGATGCTTGAGAAAAGCAATAAAAGCTTGCGATAGAGGTTAGACGAGTTTTGTTGATCAAATTGCTGACTTTTTTCAGAGAGGAGTTTTGTCGAGATCATCAAAATAGGGATGTTCCATAGCTTTCTTAGCTGAAATCCTCCTAGACGGCTCATAATGCAACATCTCCTGCAAACACAAAGTGTTCACACCTTAAATCATCCACTCATTCAAACAGTCAGACAATCGTAAAAGAAAAAAGAAAAAC</genome_strand>
        <mrna_strand>AGATAATGTCACAAAATAACAACTTGTGCTACTTGGTCACATCACTGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTG................................................................................................................................................................................................................................................................GCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAATCAAGTTGACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264885" ref_strand="-" ref_description="SGN-E264885 [cLEG-71-H9]">
      <seq>tgaatgtaatccattaagcatctttgacttgttgaaatgattgcagggatggagccataccacttctaacactgatcatgggcggtaaccttttgaagggtttgaccggttcagggattcagaaatccctacttcttggcattattgttgtcagatacattgccctgcctcttattggtatcgttgtagtcaaaggagctattcgcttgggcttggtgcaacatgatccattatatcaatttgtgcttttacttcaatttgcacttccaccagcaatgaacattggcaccataacacagttatttggagctggtgagagtgagtgttcagtgattatgttttgggcttatgcattggcttcaatatcgcttactctgtggacaacattcttcatgtggcttgtatcttaacttcatttttttttaatatcagacataaacaagttgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="48257" stop="49561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48557" g_stop="48841" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48842" i_stop="49097" i_length="256">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49098" g_stop="49260" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="448" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="449" polyA_stop="463"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E264885" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264885" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48557" e_stop="48841"/>
          <exon e_start="49098" e_stop="49260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTGGTATGACATTCAGCTAGTTATTATCTTTCCTGTTCTTTTCGTGTTTTTTTTTGGCCCGACCACAATTTCAAAACCGTAAAGATCCCTATGTTTGCTCTGCATTAATTTCAAAACCGCAAAAAAACCATATGTTTGCTCTGCATTCAATGGACAAGACAATTGGTTTTGACAGTAACCACTTGTAGCATTAAAACAATGTGTCTGTTGCATTACTAAGTCTTAGATGAGATGACACAATTCTTGTTTCACTTGGCAGGCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAAACAAGTTGAC</genome_strand>
        <mrna_strand>TGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTG................................................................................................................................................................................................................................................................GCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAAACAAGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744729" ref_strand="+" ref_description="SGN-E744729 [GI|11125684]">
      <seq>cggcacgagagcgcacaaacacaaacacagcgagagtgaagaaatggaggctgctaaaaatgctggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagataggattactggcaagattgttgcactgaagaagacaaggcttcatgaggacgaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgtcaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtaaagagcttgatgtaccagctctgcaaaggggttgctttctgccatggccatggtgtattgcacagggatctgaaaccacacaatcttctgatggaccgtaagacgaatgtgctcaaattagcagattttggacttggcagagcttatactctgcccattaagaagtacacacatgagatattaaccctgtggtatagagcccctgaggttctacttggagctactcattattccacagcagttgacatgtggtctgttggttgtatatttgctgaactagtgacaaaccaagccctcttcccaggagactctgagctgcaacaactgcttcacattttcagattgctaggtactcctaatgaagaactctggcctggggtgagcaagttagttaactggcatgaatacccccagtggaaaccacagccactctcaaccgttgtccctggtcttgatgaagatgggattcaccttctcagtgagatgttgcattatgagccgtctaggaggatttcagctaagaaagctatggaacatccctattttgatgatctcgacaaaactcctctctgaaaaaagtcagcaatttgatcaacaaaactcgtctaacctctatcgcaagcttttattgcttttctcaagcatcttttaatagtagtatcaattagtatgatgatgtgtttcatttctaaaccttttcttttaatatcaactggatcaatgtaagcacaactatgtgcaatgatatattttgctatcacattacttggggtgttttgctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51834" stop="49282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51540" g_stop="51261" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="421" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="483" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50568" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="595" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50475" g_stop="50382" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="689" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="50381" i_stop="50264" i_length="118">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="50263" g_stop="50194" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="759" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="50109" g_stop="49971" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="760" r_stop="898" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="49887" g_stop="49583" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="899" r_stop="1203" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1229" polyA_stop="1279"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E744729" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1204</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51540" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50568"/>
          <exon e_start="50475" e_stop="50382"/>
          <exon e_start="50263" e_stop="50194"/>
          <exon e_start="50109" e_stop="49971"/>
          <exon e_start="49887" e_stop="49583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCAGAAGCGCACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAGGTAATTTTACTTTTCTGCTGCAGCAGCTATCCTCATTTATCTATGCTCTTTAGATCCCCCCTGTATGTGAAAATATTCCCTTTTTCCTTCAGATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTGGTAAAACTCTTATTCATCCTTCCTCTTCCGAATGATCTTTTCCTCCTTATAGGTTGTGTAATATACTAAGCATGGAGTTATAATTGTTCTTTCTTTTGTGGTTTGTTTTCAACCTCAGCTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAGGTTTAGAGCTAAAAATCACTAGCTTTGAGTTTTGTTCCTCCTCACCTGTTCCACTATCCTAATCTTAACAGAATTGCGGTGCAGATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGTGTAGGTTTTTCTTTTTTCTTTTACGATTGTCTGACTGTTTGAATGAGTGGATGATTTAAGGTGTGAACACTTTGTGTTTGCAGGAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</genome_strand>
        <mrna_strand>CGGCACGAG-AGCGCACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAG..............................................................................................AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAG............................................................................................ATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTG......................................................................................................................CTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG....................................................................................ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT...................................................................................GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734642" ref_strand="+" ref_description="SGN-E734642 [LB13AH02]">
      <seq>tgacaaaccaagccctcttcccaggagactctgagctgcaacaactgcttcacattttcagattgctaggtactcctaatgaagaactctggcctggggtgagcaagttagttaactggcatgaatacccccagtggaaaccacagccactctcaaccgttgtccctggtcttgatgaagatgggattcaccttctcagtgagatgttgcattatgagccgtctaggaggatttcagctaagaaagctatggaacatccctattttgatgatctcgacaaaactcctctctgaaaaaagtcagcaatttgatcaacaaaactcgtctaacctctatcgcaagcttttattgcttttctcaagcatcttttaatagtagtatcaattagtatgatgatgtgtttcatttctaaaccttttcttttaatatcaactggatcaatgtaagcacaactatgtgcaatgatatattttgctatcacattacttggggtgttttgctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="50554" stop="49282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50254" g_stop="50194" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50109" g_stop="49971" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="200" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49887" g_stop="49583" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="505" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E734642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50254" e_stop="50194"/>
          <exon e_start="50109" e_stop="49971"/>
          <exon e_start="49887" e_stop="49583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAGGTTTAGAGCTAAAAATCACTAGCTTTGAGTTTTGTTCCTCCTCACCTGTTCCACTATCCTAATCTTAACAGAATTGCGGTGCAGATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGTGTAGGTTTTTCTTTTTTCTTTTACGATTGTCTGACTGTTTGAATGAGTGGATGATTTAAGGTGTGAACACTTTGTGTTTGCAGGAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</genome_strand>
        <mrna_strand>TGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG....................................................................................ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT...................................................................................GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555255" ref_strand="+" ref_description="SGN-E555255 [cTSC-6-O2]">
      <seq>gagatattaaccctgtggtatagagcccctgaggttctacttggagctactcattattccacagcagttgacatgtggtctgttggttgtatatttgctgaactagtgacaaaccaagccctcttcccaggagactctgagctgcaacaactgcttcacattttcagattgctaggtactcctaatgaagaactctggcctggggtgagcaagttagttaactggcatgaatacccccagtggaaaccacagccactctcaaccgttgtccctggtcttgatgaagatgggattcaccttctcagtgagatgttgcattatgagccgtctaggaggatttcagctaagaaagctatggaacatccctattttgatgatctcgacaaaactcctctctgaaaaaagtcagcaatttgatcaacaaaactcgtctaacctctatcgcaagcttttattgcttttctcaagcatcttttaatagtagtatcaattagtatgatgatgtgtttcatttctaaaccttttcttttaatatcaactggatcaatgtaagcacaactatgtgcaatgatatattttgctatcacattnnnaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="50777" stop="49304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50570" g_stop="50568" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50475" g_stop="50382" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="97" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50381" i_stop="50264" i_length="118">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50263" g_stop="50194" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="167" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50109" g_stop="49971" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="306" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49887" g_stop="49607" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="587" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="620"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E555255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50570" e_stop="50568"/>
          <exon e_start="50475" e_stop="50382"/>
          <exon e_start="50263" e_stop="50194"/>
          <exon e_start="50109" e_stop="49971"/>
          <exon e_start="49887" e_stop="49607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAATTTTACTTTTCTGCTGCAGCAGCTATCCTCATTTATCTATGCTCTTTAGATCCCCCCTGTATGTGAAAATATTCCCTTTTTCCTTCAGATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTGGTAAAACTCTTATTCATCCTTCCTCTTCCGAATGATCTTTTCCTCCTTATAGGTTGTGTAATATACTAAGCATGGAGTTATAATTGTTCTTTCTTTTGTGGTTTGTTTTCAACCTCAGCTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAGGTTTAGAGCTAAAAATCACTAGCTTTGAGTTTTGTTCCTCCTCACCTGTTCCACTATCCTAATCTTAACAGAATTGCGGTGCAGATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGTGTAGGTTTTTCTTTTTTCTTTTACGATTGTCTGACTGTTTGAATGAGTGGATGATTTAAGGTGTGAACACTTTGTGTTTGCAGGAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCAC</genome_strand>
        <mrna_strand>GAG............................................................................................ATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTG......................................................................................................................CTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG....................................................................................ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT...................................................................................GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357595" ref_strand="+" ref_description="SGN-E357595 [cTOS-23-P8]">
      <seq>tgaactagtgacaaaccaagccctcttcccaggagactctgagctgcaacaactgcttcacattttcagattgctaggtactcctaatgaagaactctggcctggggtgagcaagttagttaactggcatgaatacccccagtggaaaccacagccactctcaaccgttgtccctggtcttgatgaagatgggattcaccttctcagtgagatgttgcattatgagccgtctaggaggatttcagctaagaaagctatggaacatccctattttgatgatctcgacaaaactcctctctgaaaaaagtcagcaatttgatcaacaaaactcgtctaacctctatcgcaagcttttattgcttttctcaagcatcttttaatagtagtatcaattagtatgatgatgtgtttcatttctaaaccttttcttttaatatcaactggatcaatgtaagcacaactatgtgcaatgatatattttgctatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="50562" stop="49306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50262" g_stop="50194" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50109" g_stop="49971" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="208" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49887" g_stop="49607" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="489" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="490" polyA_stop="504"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E357595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50262" e_stop="50194"/>
          <exon e_start="50109" e_stop="49971"/>
          <exon e_start="49887" e_stop="49607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAGGTTTAGAGCTAAAAATCACTAGCTTTGAGTTTTGTTCCTCCTCACCTGTTCCACTATCCTAATCTTAACAGAATTGCGGTGCAGATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGTGTAGGTTTTTCTTTTTTCTTTTACGATTGTCTGACTGTTTGAATGAGTGGATGATTTAAGGTGTGAACACTTTGTGTTTGCAGGAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCAC</genome_strand>
        <mrna_strand>TGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG....................................................................................ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT...................................................................................GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453920" ref_strand="+" ref_description="SGN-E453920 [cSTS-21-H13]">
      <seq>cacacacagcgagagagaagaaatggaggctgctaaaaatgttggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagatagggttactggcaagattgttgcgctgaagaagacgaggcttcatgaggacgaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgttaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtcaagagcttgatgtaccagctctgcaaaggggttgctttctgccatggtcatggtgtgttgcacagggatctgaaaccacacaatcttctgatggaccgtaagacgaatgtgctcaaattagcagattttggacttggcagagcttatactctgcccattaagaagtacacacatgagatattaaccctgtggtatagagccccctgagttcttcttggagctactcattactccacagcagttgacatgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51818" stop="50100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51518" g_stop="51261" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="400" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="462" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50568" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="574" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50475" g_stop="50400" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="650" r_length="76" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E453920" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51518" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50568"/>
          <exon e_start="50475" e_stop="50400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAGGTAATTTTACTTTTCTGCTGCAGCAGCTATCCTCATTTATCTATGCTCTTTAGATCCCCCCTGTATGTGAAAATATTCCCTTTTTCCTTCAGATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGT</genome_strand>
        <mrna_strand>CACACACAGCGAGAGAGAAGAAATGGAGGCTGCTAAAAATGTTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGGTTACTGGCAAGATTGTTGCGCTGAAGAAGACGAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTTAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTCAAG..............................................................................................AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGTCATGGTGTGTTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAG............................................................................................ATATTAACCCTGTGGTATAGAGCCCCCTGAGTTCTTCTTGGAGCTACTCATTACTCCACAGCAGTTGACATGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454216" ref_strand="+" ref_description="SGN-E454216 [cSTS-22-F7]">
      <seq>cacacacaaacacagcgagagagaagaaatggaggctgctaaaaatgttggtaagagtgtatcggcgatggaggcattcgagaagctggagaaagttggggagggtacctatggaaaggtgtacagagcgagagatagggttactggcaagattgttgcgctgaagaagacgaggcttcatgaggacgaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgttaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtcaagagcttgatgtaccagctctgcaaaggggttgctttctgccatggtcatggtgtgttgcacagggatctgaaaccacacaatcttctgatggaccgtaagacgaatgtgctcaaattagcagattttggacttggcagagcttatactctacccattaagaagtacacgcatgagatattaaccctgtggtatagagccccctgagttctgcttggagctactcattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51824" stop="50123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51524" g_stop="51261" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="406" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="468" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50568" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="580" r_length="112" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.955" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50475" g_stop="50422" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="634" r_length="54" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E454216" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51524" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50568"/>
          <exon e_start="50475" e_stop="50422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAGGTAATTTTACTTTTCTGCTGCAGCAGCTATCCTCATTTATCTATGCTCTTTAGATCCCCCCTGTATGTGAAAATATTCCCTTTTTCCTTCAGATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTAT</genome_strand>
        <mrna_strand>CACACACAAACACAGCGAGAGAGAAGAAATGGAGGCTGCTAAAAATGTTGGTAAGAGTGTATCGGCGATGGAGGCATTCGAGAAGCTGGAGAAAGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGGTTACTGGCAAGATTGTTGCGCTGAAGAAGACGAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTTAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTCAAG..............................................................................................AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGTCATGGTGTGTTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTACCCATTAAGAAGTACACGCATGAG............................................................................................ATATTAACCCTGTGGTATAGAGCCCCCTGAGTTCTGCTTGGAGCTACTCATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415621" ref_strand="+" ref_description="SGN-E415621 [STM-21-L23]">
      <seq>tacacacacacacacagcgagagagaagaaatggaggctactaaaaatgttggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagatagggttactggcaagattgttgcgctgaagaagacgaggcttcatgaggacgaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgttaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtcaagagcttgatgtaccagctctgcaaaggggttgctttctgccatggtcatggtgtgttgcacagggatctgaaaccacacaatcttctgatggaccgntagacgaatgtgctcaaattagcagattttggacttggcagagcttatactctgccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51825" stop="50288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51526" g_stop="51261" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="408" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="470" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50588" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="562" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E415621" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51526" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCA</genome_strand>
        <mrna_strand>TACACACACACACACAGCGAGAGAGAAGAAATGGAGGCTACTAAAAATGTTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGGTTACTGGCAAGATTGTTGCGCTGAAGAAGACGAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTTAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTCAAG..............................................................................................AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGTCATGGTGTGTTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGNTAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437351" ref_strand="+" ref_description="SGN-E437351 [cSTA-3-B13]">
      <seq>cgaggtacaccaccaccaacaccagcgagagagaagaaatggaggcctacctaaaaatgttggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtaccctatggaaaggtgtaccagagcgagagatagggttacctggcaagattgttgcgctgaagaagacgaggcttcatgaggaccaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgttaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtcaagagcttgatgtaccagctctgcaaaggggttgctttctgccatggtcatggtgtgttgcacagggatctgaaaccacacaatcttctgatggaccgtaagacgaatgtgctcaaattagcagattttggacttggcagagcttatactctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51786" stop="50292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51533" g_stop="51261" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.901"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="421" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="483" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50592" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="571" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E437351" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51533" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCGCACAAACACAAACAC-AGCGAGAGTGAAGAAATGGAGG-CT-GCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTA-CCTATGGAAAGGTGTA-CAGAGCGAGAGATAGGATTA-CTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTG</genome_strand>
        <mrna_strand>CGAGGTACACCACCACCAACACCAGCGAGAGAGAAGAAATGGAGGCCTACCTAAAAATGTTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCCTATGGAAAGGTGTACCAGAGCGAGAGATAGGGTTACCTGGCAAGATTGTTGCGCTGAAGAAGACGAGGCTTCATGAGGACCAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTTAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTCAAG..............................................................................................AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGTCATGGTGTGTTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312218" ref_strand="+" ref_description="SGN-E312218 [cTOA-5-G15]">
      <seq>acacagcgagagtgaagaaatggaggctgctgaaaatgctggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagataggattactggcaagattgttgcactgaagaagacaaggcttcatgaggacgaagaaggtgttcctccaactactctccgggagatctcactgctcaaaatgctctcaagggatccccacattgtcaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaattgtaaagagcttgatgtaccaactctgcaaaggggttgctttctgccatggccatggcgtattgcacagggatctgaaaccacacaatcttctgatggaccgtaagacgaatgtgctcaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51815" stop="50326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51515" g_stop="51261" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50930" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="397" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50835" g_stop="50774" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="459" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50679" g_stop="50626" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="513" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E312218" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51515" e_stop="51261"/>
          <exon e_start="51071" e_stop="50930"/>
          <exon e_start="50835" e_stop="50774"/>
          <exon e_start="50679" e_stop="50626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAGGTTTGTAGTCTAAATTATCGGAGTTGTATGCTACTTCTCACACATTTGTGACTCTGCAGTTTAATGTTTAGTAAATTTGTGCTCTTTGAAACAGAGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAGGTAAAGCCACACTTGTACCTTTTGGTCATACACAAACTCATAAATATGCGCTTTTCATGGTCGTTTTGTCACTTTTTTTTATTTGTTGCTGCAGGGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATT</genome_strand>
        <mrna_strand>ACACAGCGAGAGTGAAGAAATGGAGGCTGCTGAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGGGAGATCTCACTGCTCAAAATGCTCTCAAGGGATCCCCACATTGTCAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAG..............................................................................................AGCTTGATGTACCAACTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGCGTATTGCACAG..............................................................................................GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436877" ref_strand="+" ref_description="SGN-E436877 [cSTA-1-O14]">
      <seq>cacacacacacacagcgagagagaagaaatggaggctactaaaaatgttggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagatagggttactggcaagattgttgcgctgaagaagacgaggcttcatgaagacgaagaaggtgttcctccaactactctccgggagatctcactcctcagaatgctctcaagggatccccacattgttaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtcaagaaatttattcgtactttccgtgcaaaaggagaaactatgccccttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51824" stop="50638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51524" g_stop="51261" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50938" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="398" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E436877" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51524" e_stop="51261"/>
          <exon e_start="51071" e_stop="50938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAA</genome_strand>
        <mrna_strand>CACACACACACACAGCGAGAGAGAAGAAATGGAGGCTACTAAAAATGTTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGGTTACTGGCAAGATTGTTGCGCTGAAGAAGACGAGGCTTCATGAAGACGAAGAAGGTGTTCCTCCAACTACTCTCCGGGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTTAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464610" ref_strand="+" ref_description="SGN-E464610 [cPRO-18-F9]">
      <seq>gagagaagaaatggaggctgctaaaaatgttggtaagagtgtatcggcgatggaggcatttgagaagctggagaaggttggggagggtacctatggaaaggtgtacagagcgagagatagggttactggcaagattgttgcgctgaagaagacgaggcttcatgaggacgaagaaggtgttcctccaactactctccgtgagatctcactcctcagaatgctctcaagggatccccacattgttaggctgatggatgttaaacaagggcagaacaaagaaggaaagactgttctttacttggtctttgagtacatggatactgatgtccagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="51806" stop="50682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51506" g_stop="51261" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51071" g_stop="50982" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="336" r_length="90" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E464610" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51506" e_stop="51261"/>
          <exon e_start="51071" e_stop="50982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAGGTATCCTTCTTACTCAATTTCTAGGGTTCTTTTTTTTTTTTTTGTTCTACTTTCAATTGAGATTTCGTTTCTATCTGATTGGTGCGGGTTATATCTATTTCAATTAGTTTTGTATATTTCACTCTTTAGGTTTGTTATTGATATCTGTATCTTGCGTTTTTATACGATGCCCTATCATTGTATAACCAGGCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATT</genome_strand>
        <mrna_strand>GAGAGAAGAAATGGAGGCTGCTAAAAATGTTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGGTTACTGGCAAGATTGTTGCGCTGAAGAAGACGAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTTAG.............................................................................................................................................................................................GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCCAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624727" ref_strand="+" ref_description="SGN-E624727 [GI|169537]">
      <seq>ctattgaaaaaacaaaaagtgagtgtgtactgcgtaggtgccaggcatcaacaatggatgcagattacggcatacctcgagaactctctgatttgcagaagcttcggtctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatcccgctggtgaacacacaattaaacggttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcactgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccttacaaaagtggttggtgttcctgttacattaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagactgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcggttcaggctagggctgaacatgataaaaatcatggtgttatcctgttgcctgagggccttattgaaagtattcctgaagtatattctctattgcaggaaattcatggtttactcaggcaaggtgtttctgctgataagatttcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctacgttcttggtcatgtttgctaccatattttagctgctggtcttaatggttacatggctactattaccaacctgaagaatcctgccaacaagtggcattgtggtgcttcccctatatctgcaatgatgactgttaagcgttacggtcgtggtcccggtaaagcatcaattggggtacctgctttgcatcctgctactgtggatttgaggggcaaatcatatgagctgttgagtcaaaatgcaacaaagtttttgttggatgatgtttatagaaacccaggtcccctccagtttgatggccctggtgcagatgccaaggccggtagccttgttgttgaagacgcggattacattggcgctattaagaaattgcaggaatacctagacaaggtgcgtacaattgtgaagcctggttgctcacaagacgtcctgaaggctgcattaagtgccatggcttctgtgactgacattctttcagtgatatcgtcaccctcaagtgtgagcacaccattttagatgagaacccatcatcttttaacattgaaaagatttggaggaactcttgcttttgcggctgtttgcttagttgtttttgtgcatttttcttttttcaatcttgtaaaagccaaataatgttgagaagattatactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70913" stop="64570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70603" g_stop="70505" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="143" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="316" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="429" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="504" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="618" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="686" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="770" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="824" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="905" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="906" r_stop="999" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.350" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1073" r_length="74" r_score="0.932"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1074" r_stop="1184" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1185" r_stop="1229" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1230" r_stop="1286" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1287" r_stop="1391" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="65918" g_stop="65802" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1392" r_stop="1508" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="65801" i_stop="65696" i_length="106">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="65695" g_stop="65592" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1509" r_stop="1612" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="65591" i_stop="65384" i_length="208">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="65383" g_stop="65218" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1613" r_stop="1778" r_length="166" r_score="0.922"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="65217" i_stop="65119" i_length="99">
            <donor d_prob="0.923" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="65118" g_stop="64915" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1779" r_stop="1982" r_length="204" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E624727" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1938</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70603" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65802"/>
          <exon e_start="65695" e_stop="65592"/>
          <exon e_start="65383" e_stop="65218"/>
          <exon e_start="65118" e_stop="64915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCTGTAAGCAACTTCTTTGAACTTATCCGGAGATGCACCCTAAACTTCCACTTTTTTGAAGTTGTGAATATCCAAAAGATCTGCTCTGTTCACTGTTTCGTTGCTGCAGGCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGAGTATGTCAAATTTCTGAATTGTTGTTTATATATATTTTCAGCTTAAAATGCATGGAACTTTTGAGTTTCAAAAGGTAGGAAGTAGTAGACATCAAATAGTAGGAGATGCTTTTAAGAAGTGGCATTCTAAACATGCATTTTGTAAGTAAACTGCTGGAGCAATACGTATCCTCTTGCAGCACCTAATTTCTCTTTTCATTTTGTGCAGACTGTTGAGTCAAAATGCAACAAAGTTTTTATTGGATGATGTTTATAGAAACCCAGGTCCCCTCCAGTTTGATGGTCCTGGTGCAGATGCCAAGGCTGTTACCCTTTGTGTTGAAGACCAGGATTACATTGGACGTATTAAGAAATTGCAGGAATACCTAGACAAGGTGCTGAAATTTTGAAACAGTATCTCCTTTTACCAACTTCTGTTGGCTATTCATTAAATGTCTTATTTCTTTCAGCATGCTTTATTATTTTATTTTCAGGTGCGTACAATTGTGAAGCCTGGTTGCTCACAAGACGTCCTGAAGGCTGCATTAAGTGCCATGGCTTCTGTGACTGACATTCTTTCAGTGATATCGTCACCCTCAAGTGTGAGCACACCATTTTAGATGAGAACCTATCATCTTTTAACATTGAAAAGATTTGGAGGAACTCTTGCTTTTGCGGCTGTTTGCCTAGTTTTTTTT</genome_strand>
        <mrna_strand>GCATCAACAATGGATGCAGATTACGGCATACCTCGAGAACTCTCTGATTTGCAGAAGCTTCGGTCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCGCTGGTGAACACACAATTAAACGGTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACTGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCTTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACATTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGACTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCGGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTTATCCTGTTGCCTGAGGGCCTTATTGAAAGTATTCCTGAAGTATATTCTCTATTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAAGATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG..................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAC............................................................................GTTCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAGAATCCTGCCAACAAGTGGCATTGTGGTGCTTCCCCTATATCT..........................................................................................................GCAATGATGACTGTTAAGCGTTACGGTCGTGGTCCCGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGA................................................................................................................................................................................................................GCTGTTGAGTCAAAATGCAACAAAGTTTTTGTTGGATGATGTTTATAGAAACCCAGGTCCCCTCCAGTTTGATGGCCCTGGTGCAGATGCCAAGGCCGGTAGCCTTGTTGTTGAAGACGCGGATTACATTGGCGCTATTAAGAAATTGCAGGAATACCTAGACAAG...................................................................................................GTGCGTACAATTGTGAAGCCTGGTTGCTCACAAGACGTCCTGAAGGCTGCATTAAGTGCCATGGCTTCTGTGACTGACATTCTTTCAGTGATATCGTCACCCTCAAGTGTGAGCACACCATTTTAGATGAGAACCCATCATCTTTTAACATTGAAAAGATTTGGAGGAACTCTTGCTTTTGCGGCTGTTTGCTTAGTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399867" ref_strand="+" ref_description="SGN-E399867 [cSTC-2-H20]">
      <seq>ctctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctacgttcttggtcatgtttgctaccatattttagctgctggtcttaatggttacatggctactattaccaacctgaagaatcctgccaacaagtggcattgtggtgctgcccctatatctgcaatgatgattgttaagcgttacggtcgtggtcccggtaaagcatcaattggggtacctgctttgcatcctgctactgtggatttgaggggcaaatcatatgagctgttgagtcaaaatgcaacaaagtttttgttggatgatgtttatagaaacccaggtcccctccagtttgatggccctggtgcagatgccaaggccgttagcctttgtgttgaagaccaggattacattggccgtattaagaaattgcaggaatacctagacaaggtgcgtacaattgtgaagcccggttgctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67068" stop="64787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66768" g_stop="66750" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="76" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="181" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.765" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="65918" g_stop="65802" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="298" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65801" i_stop="65696" i_length="106">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65695" g_stop="65592" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="402" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65591" i_stop="65384" i_length="208">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65383" g_stop="65218" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="568" r_length="166" r_score="0.964"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65217" i_stop="65119" i_length="99">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65118" g_stop="65087" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="600" r_length="32" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E399867" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66768" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65802"/>
          <exon e_start="65695" e_stop="65592"/>
          <exon e_start="65383" e_stop="65218"/>
          <exon e_start="65118" e_stop="65087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCTGTAAGCAACTTCTTTGAACTTATCCGGAGATGCACCCTAAACTTCCACTTTTTTGAAGTTGTGAATATCCAAAAGATCTGCTCTGTTCACTGTTTCGTTGCTGCAGGCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGAGTATGTCAAATTTCTGAATTGTTGTTTATATATATTTTCAGCTTAAAATGCATGGAACTTTTGAGTTTCAAAAGGTAGGAAGTAGTAGACATCAAATAGTAGGAGATGCTTTTAAGAAGTGGCATTCTAAACATGCATTTTGTAAGTAAACTGCTGGAGCAATACGTATCCTCTTGCAGCACCTAATTTCTCTTTTCATTTTGTGCAGACTGTTGAGTCAAAATGCAACAAAGTTTTTATTGGATGATGTTTATAGAAACCCAGGTCCCCTCCAGTTTGATGGTCCTGGTGCAGATGCCAAGGCTGTTACCCTTTGTGTTGAAGACCAGGATTACATTGGACGTATTAAGAAATTGCAGGAATACCTAGACAAGGTGCTGAAATTTTGAAACAGTATCTCCTTTTACCAACTTCTGTTGGCTATTCATTAAATGTCTTATTTCTTTCAGCATGCTTTATTATTTTATTTTCAGGTGCGTACAATTGTGAAGCCTGGTTGCTCACA</genome_strand>
        <mrna_strand>CTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAC............................................................................GTTCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAGAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCT..........................................................................................................GCAATGATGATTGTTAAGCGTTACGGTCGTGGTCCCGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGA................................................................................................................................................................................................................GCTGTTGAGTCAAAATGCAACAAAGTTTTTGTTGGATGATGTTTATAGAAACCCAGGTCCCCTCCAGTTTGATGGCCCTGGTGCAGATGCCAAGGCCGTTAGCCTTTGTGTTGAAGACCAGGATTACATTGGCCGTATTAAGAAATTGCAGGAATACCTAGACAAG...................................................................................................GTGCGTACAATTGTGAAGCCCGGTTGCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267452" ref_strand="+" ref_description="SGN-E267452 [cLEI-8-D13]">
      <seq>tcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctatgtgcttggtcatgtttgctaccatattttagctgctggtcttaatggttacatggctactattaccaacctgaaaaatcctgccaacaagtggcattgtggtgctgcccctatatctgcaatgatgactgttaagcgctacggtcgtggtcctggtaaagcatcaattggggtacctgctttgcatcctgctactgtggatttgaggggcaaatcatatgaactgttgagtcaaaatgcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67242" stop="65062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66942" g_stop="66877" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="111" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="168" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="273" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65918" g_stop="65802" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="390" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65801" i_stop="65696" i_length="106">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65695" g_stop="65592" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="494" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65591" i_stop="65384" i_length="208">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65383" g_stop="65362" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="516" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E267452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66942" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65802"/>
          <exon e_start="65695" e_stop="65592"/>
          <exon e_start="65383" e_stop="65362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCTGTAAGCAACTTCTTTGAACTTATCCGGAGATGCACCCTAAACTTCCACTTTTTTGAAGTTGTGAATATCCAAAAGATCTGCTCTGTTCACTGTTTCGTTGCTGCAGGCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGAGTATGTCAAATTTCTGAATTGTTGTTTATATATATTTTCAGCTTAAAATGCATGGAACTTTTGAGTTTCAAAAGGTAGGAAGTAGTAGACATCAAATAGTAGGAGATGCTTTTAAGAAGTGGCATTCTAAACATGCATTTTGTAAGTAAACTGCTGGAGCAATACGTATCCTCTTGCAGCACCTAATTTCTCTTTTCATTTTGTGCAGACTGTTGAGTCAAAATGCAACA</genome_strand>
        <mrna_strand>TCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG..................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT............................................................................GTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCT..........................................................................................................GCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGA................................................................................................................................................................................................................ACTGTTGAGTCAAAATGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266862" ref_strand="+" ref_description="SGN-E266862 [cLEI-7-L16]">
      <seq>taatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcagttcaggctagggctgaacatgataaaaatcatggtgtcatcctgttgcctgaagggcttattgaaagtattcctgaaatatatgctctattgcaggaaattcatggtttactcaggcaaggtgtttctgctgataacatttcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctatgtgcttggtcatgtttgctaccatattttagctgctggtcttaatggttacatggctactattaccaacctgaaaaatcctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67769" stop="65535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67580" g_stop="67574" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="101" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.350" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="286" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="331" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="388" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="493" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65918" g_stop="65835" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="577" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E266862" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67580" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCC</genome_strand>
        <mrna_strand>TAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG..................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT............................................................................GTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325961" ref_strand="+" ref_description="SGN-E325961 [cTOC-12-H22]">
      <seq>tatggggctaaaggcatcacatgttgcattagagtgcggtctgctgtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcagttcaggctagggctgaacatgataaaaatcatggtgtcatcctgttgcctgaagggcttattgaaagtattcctgaaatatatgctctattgcaggaaattcatggtttactcaggcaaggtgtttctgctgataacatttcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttatagctcatctcgtggaaacagaaatgaacaagcgattgaaagaaggaacttacaaaggaaagaaatttaatgctatttgccatttctttggttatcaagcacggggatcattgccatcaaagtttgattgtgactatgcctatgtgcttggtcatgtttgctaccatattttagctgctggtcttaatggttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67933" stop="65566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67634" g_stop="67574" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="155" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.350" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="229" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="340" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="385" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="442" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="547" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65918" g_stop="65866" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="600" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E325961" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67634" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACAT</genome_strand>
        <mrna_strand>TATGGGGCTAAAGGCATCACATGTTGCATTAGAGTGCGGTCTGCTGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG..................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT............................................................................GTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201362" ref_strand="+" ref_description="SGN-E201362 [cLEC-4-K24]">
      <seq>tcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagcttctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67595" stop="65692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67394" g_stop="67375" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.00"/>
            <acceptor a_prob="0.350" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="94" r_length="74" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="205" r_length="111" r_score="0.829"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="0.76"/>
            <acceptor a_prob="0.869" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="250" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="307" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="412" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65918" g_stop="65889" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="442" r_length="30" r_score="0.833"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E201362" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67394" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTTA</genome_strand>
        <mrna_strand>TCAAGCTAGGGCTGAACAAG.................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG........................................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG..................................................................................CTTCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG.....................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT............................................................................GTACTTGGTCACGTCTGCTATCATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325209" ref_strand="+" ref_description="SGN-E325209 [cTOC-1-G11]">
      <seq>atctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtacttggtcacgtctgctatcatatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67748" stop="65692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67448" g_stop="67375" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.86"/>
            <acceptor a_prob="0.350" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="148" r_length="74" r_score="0.919"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="259" r_length="111" r_score="0.829"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="0.76"/>
            <acceptor a_prob="0.869" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="304" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="361" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="466" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65918" g_stop="65890" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="495" r_length="29" r_score="0.862"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E325209" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67448" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCTTGGTCATGTTTGCTACCATATTTT</genome_strand>
        <mrna_strand>ATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG.................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG........................................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG..................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG.....................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT............................................................................GTACTTGGTCACGTCTGCTATCATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480250" ref_strand="+" ref_description="SGN-E480250 [cSTD-13-E18]">
      <seq>cccgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttacactttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggtttgctcacacaaggcgtttctgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaagcagctcctcttgcacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttatagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67938" stop="65692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67641" g_stop="67574" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="162" r_length="94" r_score="0.894"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.88"/>
            <acceptor a_prob="0.350" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="236" r_length="74" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="347" r_length="111" r_score="0.856"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="0.78"/>
            <acceptor a_prob="0.869" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="392" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="0.91"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="449" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66099" g_stop="65995" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="554" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65994" i_stop="65919" i_length="76">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65918" g_stop="65914" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="559" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E480250" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67641" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65995"/>
          <exon e_start="65918" e_stop="65914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATGTAAGTTTTGCTGGAGTTTCTATATCTTCTTTTCTAATCTTGATTTCAGATACATAATTCCGACAACCAAATACAGGTGCT</genome_strand>
        <mrna_strand>CCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACACTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG.................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTGCTCACACAAGGCGTTTCTGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAGCAG..................................................................................CTCCTCTTGCACCCAGAATCAGATGATTCTGCTCAGCTATCACAG.....................................................................................ATTGAAACCGAGAAACTTATAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATAT............................................................................GTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205668" ref_strand="+" ref_description="SGN-E205668 [cLEC-21-E3]">
      <seq>gaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagagtgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtatctgcatcaaagcttactctttttgacataacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaaccatggtgtgatcctgttgccagaggggcttattgaaagtattcctgaagtatatgctctactgcaggaaattcatggcttgctcaaacaaggcgtttccgctgataagatttcctctcaactatcaccttgggcatctgcgctctttgagttcttgccgccctttataaaaaaacagctcctcttacacccagaatcagatgattctgctcagctatcacagattgaaaccgagaaacttctagctcatctggtggaaacagaaatgaataagcgattgaaagaaggaacttacaagggaaagaaatttaatgcaatttgccatttctttggttatcaagctcggggatcattgccatcaaagtttgattgtgactatgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="67956" stop="65694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67917" g_stop="67866" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.894" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="133" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="227" r_length="94" r_score="0.883"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.86"/>
            <acceptor a_prob="0.350" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="301" r_length="74" r_score="0.919"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="412" r_length="111" r_score="0.829"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="0.76"/>
            <acceptor a_prob="0.869" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="457" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="0.93"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66664" g_stop="66608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="514" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.946" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66099" g_stop="65994" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="620" r_length="106" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E205668" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67917" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66608"/>
          <exon e_start="66099" e_stop="65994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTGGTAAGTTTGTATGTAATGATTCTTTGGGATCTCTAACAAGTGATTGGAGAGTAAGTTAGAAGTACAATGTCCCGCAAGGATTGAGGATGATGTTTGTGCAGAACTGCAGATAAAGATTATTTTGAAATTTCCTAAGAGTTCTAGGAAGTTACTCAAATTATCTCTCTCCTATTTATGAAAAAATATTACTTTTCTCCATTCTGCTTGTTAACTCCAAGTCCATGATGTATTATCTGCAAGGGCTCAAACATCAGGTGGATAAAATTTCCCCATTGCACAAAATTTTCATATTCACTAATTTTTTAGTTTTCCTTGATGGAAGTCGGTCCCTGACGATGAATTGTTCTTTTCTTCTTTTATTTTCATCAAGATGTTTCTTGTTACTTTCTTGTAACAGACTATTTGTAGGTGAGAGTTAAAAGGAAAAAGACTGAAGCTACAAACTCTAAAGATACTTGCTCCCAATTTTTTTATGTATGACTGTCCTTTACTTTCTGTCACTTTACAGAAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATG</genome_strand>
        <mrna_strand>GAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTAATTCTTGGTGAGGAGGTATCTGCATCAAAGCTTACTCTTTTTGACATAACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG.................................................................................ATAAAAACCATGGTGTGATCCTGTTGCCAGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACTGCAG........................................................................................................................................................................................................................................GAAATTCATGGCTTGCTCAAACAAGGCGTTTCCGCTGATAAGATTTCCTCTCAACTATCACCTTGGGCATCTGCGCTCTTTGAGTTCTTGCCGCCCTTTATAAAAAAACAG..................................................................................CTCCTCTTACACCCAGAATCAGATGATTCTGCTCAGCTATCACAG.....................................................................................ATTGAAACCGAGAAACTTCTAGCTCATCTGGTGGAAACAGAAATGAATAAGCGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGGAACTTACAAGGGAAAGAAATTTAATGCAATTTGCCATTTCTTTGGTTATCAAGCTCGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709454" ref_strand="+" ref_description="SGN-E709454 [FA52AD03]">
      <seq>ccatttaaggctggggngganaaaagatcagattagaacgactgtgcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcagttcaggctagggctgaacatgataaaaatcatggtgtcatcctgttgcctgaagggcttattgaaagtattcctgaaatatatgctctattgcaggaaattcatggtttactcacgcaaggtgtttctgctgataacatttcctctcaactatcaccatgggcttctgcacttttcgaatttttgccgcattttatcagaaagcagcttctcctacacccagaatcagatgactctgctcagctatcacagattgagaccgagaaacttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69186" stop="66345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68886" g_stop="68777" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="178" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="262" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="316" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="397" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="491" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.350" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="565" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66987" g_stop="66877" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="676" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66794" g_stop="66750" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="721" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="66664" g_stop="66645" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="722" r_stop="741" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E709454" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68886" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66877"/>
          <exon e_start="66794" e_stop="66750"/>
          <exon e_start="66664" e_stop="66645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAGGTGCAGTTTCTGTATGTTTCTAAATTGACTGACTGAAGTTCCATTTTACAGTGCTTACACCCCTAGACTTGTGATTTTGCAGCTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAGGTTATTACACTTGCTGTTTGGATGCTGCTGCTTGATGATATATGAACTATCTATGAGTTGATTATCTTTAATGCTTTCCTTACAGATTGAGACCGAGAAACTTAT</genome_strand>
        <mrna_strand>CCATTTAAGGCTGGGGNGGANAAAAGATCAGATTAGAACGACTGTGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCACGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG..................................................................................CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG.....................................................................................ATTGAGACCGAGAAACTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449751" ref_strand="+" ref_description="SGN-E449751 [cSTS-7-K22]">
      <seq>aagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccttacaaaagtggttggtgttcctgttacattaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcggttcaggctagggctgaacatgataaaaatcatggtgttatcctgttgcctgaggggcttattgaaagtattcctgaagtatatgctctattgcangaaattcatggtttactcaggcaaggtgtttctgctgataagatttcctctcaactatcaccatgggcttctgcactttttcgatttttgccgcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69163" stop="66590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68863" g_stop="68777" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="155" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="239" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="293" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="374" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="468" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.98"/>
            <acceptor a_prob="0.350" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="542" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66987" g_stop="66890" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="640" r_length="98" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E449751" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68863" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTT</genome_strand>
        <mrna_strand>AAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCTTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACATTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCGGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTTATCCTGTTGCCTGAGGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTATTGCAN........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAAGATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTTCGATTTTTGCCGCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271894" ref_strand="+" ref_description="SGN-E271894 [cLEM-8-H22]">
      <seq>ctttgaaattggatggtcttgtcatcattggacgagtgacatcaaacaccgatgctgctcatctggcataaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacacaacaaatttgtgatgcagttcaggctagggctgaacatgataaaaatcatggtgtcatcctgttgcctgaaaggcttattgaaagtattcctgaaatatatgctctattgcaggaaattcatggtttactcaagcaaggtgtttctgctgataacatttcctctcaactatcaccatgggcttctgcactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69109" stop="66608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68809" g_stop="68777" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="101" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="185" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="239" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="320" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="414" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.350" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67293" g_stop="67220" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="488" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66987" g_stop="66908" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="568" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E271894" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68809" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67220"/>
          <exon e_start="66987" e_stop="66908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAGGTATGATGCAAAATAAATTGTTTAATACCTTAGCTGCATGCTAGATCTCCTTCCTGGAACAACTGCTTCCCCCCACCCCACCCCACCCCACCCCAAAACCCAACCAAAAAAAAAAAAAGCAGAACAGAGGTGTAAGATGACGCATTTTCCATGTTAATTTTTTATTGCTAGAAAGCTTTGTTGGGATGTGGACTTGTTATGAAATTGCCTTTTCTAATTGTATGAATTCCAGGAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTT</genome_strand>
        <mrna_strand>CTTTGAAATTGGATGGTCTTGTCATCATTGGAC................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCATAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG.................................................................................ATAAAAATCATGGTGTCATCCTGTTGCCTGAAAGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG........................................................................................................................................................................................................................................GAAATTCATGGTTTACTCAAGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454121" ref_strand="+" ref_description="SGN-E454121 [cSTS-22-O9]">
      <seq>ggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcctgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggttaactcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcatccgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcagtcacatcctaatatggtaattcttggtgaggaggtagctgcatcaaagcttactctttttgacatcacaaacaaaatttgtgatacagttcaagctagggctgaacaagataaaaccatggtgtgatcctgttgccagaagggcttattgaaagtattcctgaagtatatgctctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69339" stop="66926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69039" g_stop="68976" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="178" r_length="114" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="246" r_length="68" r_score="0.853"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="330" r_length="84" r_score="0.905"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.942" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="384" r_length="54" r_score="0.870"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.894" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="465" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67468" g_stop="67375" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="559" r_length="94" r_score="0.904"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81">
            <donor d_prob="0.938" d_score="0.88"/>
            <acceptor a_prob="0.350" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67293" g_stop="67224" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="628" r_length="69" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E454121" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69039" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67375"/>
          <exon e_start="67293" e_stop="67224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATGGTATTGAAGCTTCTAGGTTTTCATTTTTCTTTAGAGTCATTTTTGAGTTTTCCAGTCAGCTGACTAAGGTTTTGTATTCAGATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATT</genome_strand>
        <mrna_strand>GGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG.....................................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCCTGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG................................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...........................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATCCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTAATTCTTGGTGAGGAGGTAGCTGCATCAAAGCTTACTCTTTTTGACATCACAAACAAAATTTGTGATACAGTTCAAGCTAGGGCTGAACAAG.................................................................................AT-AAAACCATGGTGTGATCCTGTTGCCAGAAGGGCTTATTGAAAGTATTCCTGAAGTATATGCTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407038" ref_strand="+" ref_description="SGN-E407038 [PPI-5-F14]">
      <seq>attttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccttacaaaagtggttggtgttcctgttacattaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70147" stop="67113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69847" g_stop="69784" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="177" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="252" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="366" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="434" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="518" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="572" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="653" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67468" g_stop="67413" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="709" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E407038" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69847" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACA</genome_strand>
        <mrna_strand>ATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCTTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACATTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255160" ref_strand="+" ref_description="SGN-E255160 [cLEG-31-M15]">
      <seq>tttgtggtagacaatctcctggaggacaccaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattagactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatatggtgattcttggagaggaggtagctgcatcaaagcttactatttttgacatcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69733" stop="67114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69433" g_stop="69335" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="175" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="289" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="357" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="441" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="495" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="576" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105">
            <donor d_prob="0.589" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67468" g_stop="67414" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="631" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E255160" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69433" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
          <exon e_start="67468" e_stop="67414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGTAGACAATCTCCTGGAGGACA-CAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATGGTTAGTTTTATCTCTGAGATGATAAGCTGGCGCTGCACCTTGGACATGGTGCTTCTTTATATATTGCAAGTGTTCTTGCTTACTAAATGTTGAGTGATCTTGCAGGTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACAC</genome_strand>
        <mrna_strand>TTTGTGGTAGACAATCTCCTGGAGGACACCAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG.........................................................................................................GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449108" ref_strand="+" ref_description="SGN-E449108 [cSTS-5-K2]">
      <seq>gtactttgcttggttttctgggtggttctgaaggtttatttgcacagaaaaccctagagatcaccaatgatattcttgccacctataagaatcaaggtggttatgacatgctgggtcggacaaaagatcaaattagaacaaccgagcaagttaatgccgcaatggctgcatgcaaagctttgaaattggatgcccttatcattattggaggggtaacatcaaacactgatgctgctcaactggccgaaacatttgccgaagcaaaatgccaaacaaaagtggttggagttcctgttacattaaatggagatctaaagaatcagtttgttgaaacaaacgtcggttttgacacaatatgcaaggttaattcccaactcattagcaatatgtgcactgatgcgctctcggcagaaaagtactactatttcattcgactcatggggcgaaaggcatcacatgttgccttagaatgcactctgcaggcacatcctaatatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69351" stop="67272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69351" g_stop="69335" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="21" r_length="17" r_score="0.765"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="96" r_length="75" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="210" r_length="114" r_score="0.904"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="278" r_length="68" r_score="0.853"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="362" r_length="84" r_score="0.905"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="0.90"/>
            <acceptor a_prob="0.942" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="416" r_length="54" r_score="0.852"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="0.84"/>
            <acceptor a_prob="0.894" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67654" g_stop="67574" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="497" r_length="81" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E449108" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69351" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG</genome_strand>
        <mrna_strand>TTTGCTTGGTTTTCTGG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAGAAAACCCTAGAGATCACCAATGATATTCTTGCCACCTATAAGAATCAAG.....................................................................................GTGGTTATGACATGCTGGGTCGGACAAAAGATCAAATTAGAACAACCGAGCAAGTTAATGCCGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGCCCTTATCATTATTGGAG................................................................................................GGGTAACATCAAACACTGATGCTGCTCAACTGGCCGAAACATTTGCCGAAGCAAAATGCCAAACAAAA...........................................................................................................................................................GTGGTTGGAGTTCCTGTTACATTAAATGGAGATCTAAAGAATCAGTTTGTTGAAACAAACGTCGGTTTTGACACAATATGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATTCCCAACTCATTAGCAATATGTGCACTGATGCGCTCTCGGCAGAAAAG...................................................................................................................................................................................................................TACTACTATTTCATTCGACTCATGGGGCGAAAGGCATCACATGTTGCCTTAGAATGCACTCTGCAGGCACATCCTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206464" ref_strand="+" ref_description="SGN-E206464 [cLEC-23-I10]">
      <seq>tattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattataacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcagctgagaagtattactatttcattaaactcatggggcgaaaggcatcacatgttgcattagagtgcactctgcagtcacatcctaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69736" stop="67275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69436" g_stop="69335" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="177" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="291" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="359" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="443" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="497" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67654" g_stop="67575" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="577" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E206464" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69436" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATAT</genome_strand>
        <mrna_strand>TATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTATAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCATTAAACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706394" ref_strand="+" ref_description="SGN-E706394 [FA29DD04]">
      <seq>cggttatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactcccaactaattagcaatgtatgcactgatgcactctcacctgagaagtattactatttccttagactcatggggcgaaaggcatcacatgttgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70876" stop="67304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70580" g_stop="70505" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="250" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="363" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="438" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="552" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="620" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="704" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67919" g_stop="67866" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="758" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.894" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67654" g_stop="67604" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="809" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E706394" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70580" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67866"/>
          <exon e_start="67654" e_stop="67604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGG-CATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAGGTACCAACTCTATTCATATCCTGAAAGTTTTTCGTTGTTGCTTCTGATGTAGTACGGTGCTGAAAATACAACATAGAATACTAATCTGGTAGTACGAAACCCTGATGGAGGATTGTCCTAACTAGTTGATTATGATTTACAGCACATGTTTCTTGTTACACCTTTGTTTTTGTCTTTCTATTAACGTACTGTGGGGATATTTCCTTTTCAGTATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTA</genome_strand>
        <mrna_strand>CGGTTATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCACCTGAGAAG...................................................................................................................................................................................................................TATTACTATTTCCTTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482816" ref_strand="+" ref_description="SGN-E482816 [cSTE-5-M24]">
      <seq>gcagattacggcatacctcgagaactctctgatttgcagaagcttcggtctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacggttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcactgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccttacaaaagtggnttggtgttcctgttacattaaatgggggatctcaagaatcagtttgttgaagcgaaacgttggttttgacacaatctgcaaggttaactcccaactaattagncatgtatgcactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70888" stop="67583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70588" g_stop="70505" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="257" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="370" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="445" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="559" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="627" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="714" r_length="87" r_score="0.917"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.942" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67919" g_stop="67883" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="751" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E482816" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70588" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
          <exon e_start="67919" e_stop="67883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGG-TTGGTGTTCCTGTTACCTTAAAT-GGGGATCTCAAGAATCAGTTTGTTGAAGCG-AACGTTGGTTTTGACACAATCTGCAAGGTATTAATACAATCACCACATAGAATTAGCTCGTAACTGGCTTCCGTTTTTCATTGAAATGCATTGCCGTGTAAATTCTTCTTCTTCATGCTTCCCACCCCTTGGTTTAGGGTGGTTTTTTTATTTCTTGGTGGGCCGAGGATTTGATTGGACCTACTGCTTCAATCTTCTTCCTCTTTCTTCTTGTTATTCTTTGTAGTGGAATTGCAGGCATCATCCACATTTGATGGTATACTCCCATGGGTAGATGTAGGTTTTGCAGTGTTATATTGCACTTTCATGGACTTTTAGATGGGGAATAGCTCTTCTCTTTCTCTTTGTGATGTTGTGGATGTTAATTGAGTAATACAAGCCTTGGACTAGCTGATGTGTCTTTTGACTTCTTGATTTCTGGAATTCTATCCAATTGTGATTTAGATCAGGGAAAAGCTAATTATATGTGGTTCCACCTCAGGTTAACTCCCAACTAATTAGCAATGTATGCACTGATG</genome_strand>
        <mrna_strand>GCAGATTACGGCATACCTCGAGAACTCTCTGATTTGCAGAAGCTTCGGTCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGGTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACTGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCTTACAAAA...........................................................................................................................................................GTGGNTTGGTGTTCCTGTTACATTAAATGGGGGATCTCAAGAATCAGTTTGTTGAAGCGAAACGTTGGTTTTGACACAATCTGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAACTCCCAACTAATTAGNCATGTATGCACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693094" ref_strand="+" ref_description="SGN-E693094 [LH_Ea10G20]">
      <seq>gagagtactattatattatattgaacacacaaaaaagtgagctaggcattaacaatggatgcagattacggcatagctcgagaactctctgatttgcagaaacttcgatctgactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcaaattagaacgattgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttgaagcgaacgttggttttgacacaatctgcaaggttaactccccactaattagcaatggatgcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70949" stop="68064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70649" g_stop="70505" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="317" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="430" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="619" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="687" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68374" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="771" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E693094" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70649" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTACTATTATATTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG</genome_strand>
        <mrna_strand>GAGAGTACTATTATATTATATTG-AACACACAAAAAAGTGAGCTAGGCATTAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTGACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAAATTAGAACGATTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555671" ref_strand="+" ref_description="SGN-E555671 [cTSD-1-A23]">
      <seq>ggcataaacaatggatgcagattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccctacaaaagtggttggtgttcctgttaccttaaatggggatctcaagaatcagtttgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70904" stop="68105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70604" g_stop="70505" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="273" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="386" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="461" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="575" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="643" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68405" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="696" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E555671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70604" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGA</genome_strand>
        <mrna_strand>GGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA...........................................................................................................................................................GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481528" ref_strand="+" ref_description="SGN-E481528 [cSTD-18-D13]">
      <seq>gaactctctgatttgcagaagcttcgatctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaatggttcttcccacacacatatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaatttgcagaaacaaatgccttacaaagtggttggtgttcctggtacattaaatggggatctcaagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70867" stop="68115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70567" g_stop="70505" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="236" r_length="173" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="349" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="424" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="538" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="603" r_length="65" r_score="0.941"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68415" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="646" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E481528" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70567" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATC</genome_strand>
        <mrna_strand>GAACTCTCTGATTTGCAGAAGCTTCGATCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAATGGTTCTTCCCACACACATATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAG-AAAATTTGCAGAAAC-AAATGCCTTAC-AAA...........................................................................................................................................................GTGGTTGGTGTTCCTGGTACATTAAATGGGGATCTCAAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442843" ref_strand="+" ref_description="SGN-E442843 [cSTA-35-M19]">
      <seq>tttaaaactcttgagatcaccgatgacgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagattagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcattattggaggagagacattaaacaccgatgctgctcatctggcataaaaatttgcagaaacaaaatgccttacaaaagtggatggagttcctgttacattaaaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="69324" stop="68311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69027" g_stop="68976" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="166" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="234" r_length="68" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68457" g_stop="68427" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="266" r_length="32" r_score="0.839"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E442843" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>265</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69027" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGTTGGTGTTCCTGTTACCTT-AAATGGGG</genome_strand>
        <mrna_strand>TTTAAAACTCTTGAGATCACCGATGACGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATTAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATTATTGGAG................................................................................................GAGAGACATTAAACACCGATGCTGCTCATCTGGCATAAAAATTTGCAGAAACAAAATGCCTTACAAAA...........................................................................................................................................................GTGGATGGAGTTCCTGTTACATTAAAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600108" ref_strand="+" ref_description="SGN-E600108 [53112]">
      <seq>aaacaaaaagtgagtgtgtactgcgtaggtgccaggcatcaacaatggatgcagattacggcatacctcgagaactctctgatttgcagaagcttcggtctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacggttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcactgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaaatttgcagaaacaaaatgccttacaaaagtggtatggtgttcctgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70913" stop="68311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70603" g_stop="70505" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="134" r_length="99" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="307" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="420" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="495" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="609" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68613" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="677" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68457" g_stop="68439" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="697" r_length="20" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E600108" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70603" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68613"/>
          <exon e_start="68457" e_stop="68439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAAGTATGTGTTATTCCCCTTGTGTCATGTAAAGCAATAAATCTTCTATTCTATTTTTTCTGATTTTTCCTGCTTCTAATCCAAACTTTGCATCTTATATCCGCTGTATTGTCTTATGCATTAGTATCACACTAAATTAATGTCTTTATCTTCTCTAGGTGGT-TGGTGTTCCTGTTA</genome_strand>
        <mrna_strand>GCATCAACAATGGATGCAGATTACGGCATACCTCGAGAACTCTCTGATTTGCAGAAGCTTCGGTCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGGTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACTGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCTTACAAAA...........................................................................................................................................................GTGGTATGGTGTTCCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272633" ref_strand="+" ref_description="SGN-E272633 [cLEM-21-D18]">
      <seq>agattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgctgctcatctggcagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70886" stop="68341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70586" g_stop="70505" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="255" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="368" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="443" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="557" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68641" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="597" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E272633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70586" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAA</genome_strand>
        <mrna_strand>AGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444004" ref_strand="+" ref_description="SGN-E444004 [cSTA-41-E3]">
      <seq>caatggatgcagattacggcatacctcgagaactctctgatttgcagaagcttcggtctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacggttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcactgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70896" stop="68353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70596" g_stop="70505" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="265" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="378" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="453" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="567" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68653" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="595" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E444004" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70596" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCTCA</genome_strand>
        <mrna_strand>CAATGGATGCAGATTACGGCATACCTCGAGAACTCTCTGATTTGCAGAAGCTTCGGTCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGGTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACTGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448338" ref_strand="+" ref_description="SGN-E448338 [cSTS-2-N13]">
      <seq>catcaacaatggatgcagattacggcatacctcgagaactctctgatttgcagaagcttcgatctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacggttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaatgtcatatggggtcttcatgatgctcttaaggttcacaaccccaaaaatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctgggacggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggccttgtcatcattggaggagtgacatcaaacaccgatgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70902" stop="68355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70602" g_stop="70505" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="271" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="384" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="459" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="573" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68655" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="599" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E448338" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70602" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCTGCT</genome_strand>
        <mrna_strand>CATCAACAATGGATGCAGATTACGGCATACCTCGAGAACTCTCTGATTTGCAGAAGCTTCGATCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGGTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAATGTCATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAAAAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGACGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGCCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268684" ref_strand="+" ref_description="SGN-E268684 [cLEM-9-G7]">
      <seq>ttgaaacacacaaaaaagtgaggtaggcataaacaatggatgcagattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70929" stop="68358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70629" g_stop="70505" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="298" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="411" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="486" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="600" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68658" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="623" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E268684" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70629" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCT</genome_strand>
        <mrna_strand>TTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259431" ref_strand="+" ref_description="SGN-E259431 [cLEG-43-P4]">
      <seq>tgaaacacacagaaaagtgaggtaggcttaaacaacggatgcagatcacggcatatctcgagaactctcggatgtgcagaaacttcgatctcactaccaccctgaacttccaccttgccttcagggtactactgtacgggtagaactccgtgatgcaaccactgcagctgatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcatattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggaggagtgacatcaaacaccgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70928" stop="68358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70628" g_stop="70505" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="297" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="410" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="485" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="599" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96">
            <donor d_prob="0.850" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68680" g_stop="68658" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="622" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E259431" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70628" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
          <exon e_start="68680" e_stop="68658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAGGTATTGATACTGCTACAGTTATTAATGGTATATGACGAACCTTAAAGTACACTATTGCACTTCATCTAAAGTCTAACAATATGCATCGACTTGAAGGAGTGACATCAAACACCGATGCT</genome_strand>
        <mrna_strand>TGAAACACACAGAAAAGTGAGGTAGGCTTAAACAACGGATGCAGATCACGGCATATCTCGAGAACTCTCGGATGTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGCCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTACGGGTAGAACTCCGTGATGCAACCACTGCAGCTGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCATATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG................................................................................................GAGTGACATCAAACACCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309129" ref_strand="+" ref_description="SGN-E309129 [cLEZ-1-I17]">
      <seq>cagattacggcatagttcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70887" stop="68477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70587" g_stop="70505" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="256" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="369" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="444" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68777" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="558" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E309129" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70587" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG</genome_strand>
        <mrna_strand>CAGATTACGGCATAGTTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337680" ref_strand="+" ref_description="SGN-E337680 [cTOE-17-L11]">
      <seq>ttatattgaaacacacaaaaaagtgaggtaggcataaacaatggatgcagattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70934" stop="68481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70634" g_stop="70505" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="303" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="416" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="491" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68781" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="601" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E337680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70634" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATT</genome_strand>
        <mrna_strand>TTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270934" ref_strand="+" ref_description="SGN-E270934 [cLEM-6-J18]">
      <seq>ttgaaacacacaaaaaagtgaggtaggcataaacaatggatgcggattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatctgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70929" stop="68530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70629" g_stop="70505" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="298" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="411" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="486" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68830" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="547" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E270934" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70629" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGC</genome_strand>
        <mrna_strand>TTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCGGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATCTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399638" ref_strand="+" ref_description="SGN-E399638 [cSTC-1-I21]">
      <seq>caacaatggatgcagattacggcatacctcgagaactctctgatgggcagaagcttcgatctcactaccaccctgaacttcctccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacggttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgaacatcctgcaattagggttggggtgctattttgtggtanacaatctcctgtacgacacaatgtcatatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70898" stop="69091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70599" g_stop="70505" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="268" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69391" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="325" r_length="57" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E399638" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70599" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGG</genome_strand>
        <mrna_strand>CAACAATGGATGCAGATTACGGCATACCTCGAGAACTCTCTGATGGGCAGAAGCTTCGATCTCACTACCACCCTGAACTTCCTCCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGGTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAACATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTANACAATCTCCTGTACGACACAATGTCATATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283781" ref_strand="+" ref_description="SGN-E283781 [cLES-1-O5](-)">
      <seq>aaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcagagattctcttgtatgtgtcttgctttgacatctgaaggatgaagttcactgttattagttaatgacttatgagctatataatatctatgcaactttttaatagttccaaccgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="72507" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72207" g_stop="72086" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71870" g_stop="71432" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="561" r_length="439" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E283781" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72207" e_stop="72086"/>
          <exon e_start="71870" e_stop="71432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCGAGATTCGGTT</genome_strand>
        <mrna_strand>AAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398665" ref_strand="+" ref_description="SGN-E398665 [TUS-44-D16](-)">
      <seq>aaaaaaaagtcagggaagcagaaaccacgggcttttggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcagagattctcttgtatgtgtcttgctttgacatctgaaggatgaagttcactgttattagttaaagacttatgagctatataatatctatgcaactttttaatagttccaaccgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="72088" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71788" g_stop="71440" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E398665" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71788" e_stop="71440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCGAG</genome_strand>
        <mrna_strand>AAAAAAAAGTCAGGGAAGCAGAAACCACGGGCTTTTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAAAGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693626" ref_strand="+" ref_description="SGN-E693626 [LH_Ea01M24](-)">
      <seq>ggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaacagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatctagagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttttatgaccaagcaggagtctgctgttgggttccctgctttggttcccccccctcccatgcctgctcattttacccagccaaacctggtcagttccagaagaaaatcagggaagcagaaaccacgtgcttctggttccaataaaggagggaaaaaagactagtctgattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtccctccccgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcatagattctcttgtatgtgtcttgctttgacatctgaaggatgtagtacggtgttattagttaatgacttatgagctatataatcttaaaagaactttttaatagttccaaccggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73606" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73306" g_stop="73235" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72107" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="275" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72106" i_stop="71871" i_length="236">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71442" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="702" r_length="427" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="724"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E693626" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73306" e_stop="73235"/>
          <exon e_start="72309" e_stop="72107"/>
          <exon e_start="71870" e_stop="71442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCG</genome_strand>
        <mrna_strand>GGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAACAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTAGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTTTATGACCAAGCAGG............................................................................................................................................................................................................................................AGT--CTGCTGTTGGGTTCCCTGCTTTGGTTCCCCCCCCTCCCATGCCTGCTCATTTTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAATCAGGGAAGCAGAAACCACGTGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCTGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTCCCTCCCCGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCATAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGTAGTACGGTGTTATTAGTTAATGACTTATGAGCTATATAATCTTAAAAGAACTTTTTAATAGTTCCAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602812" ref_strand="+" ref_description="SGN-E602812 [55886]">
      <seq>tttgaatcagaatgcaaaaggctggggtttgttctccagtgttgtcttgctgaaaatcaagctttacgcttctctttgcagaatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctcttgttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaaatcagggaagcagaaaccacgggcttctccttccaataaaggaaggaaaaaagactagtcggattttgttgttcctgtccttcatgatgggcaaaagatgcaaagcttcaagatcgaggatgaagttcaacccccattccttgggagttcgtgatgtgattcgttgtgatcaaatccattcccttaggtggatcatggttccttttgagttctttagttttgtgtcagagattctctgtatgtgtcttgctttgacatctgaaggatgtagttcactgttattagttaatgacttatgagctatatatattatctatgcaactttttaacagttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="72524" stop="71145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72224" g_stop="72086" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71870" g_stop="71445" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="567" r_length="428" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="579"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E602812" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72224" e_stop="72086"/>
          <exon e_start="71870" e_stop="71445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTT-GTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATA-A-TATCTATGCAACTTTTTAATAGTTCCAA</genome_strand>
        <mrna_strand>TTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGTTGTCTTGCTGAAAATCAAGCTTTACGCTTCTCTTTGCAGAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTGTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAATCAGGGAAGCAGAAACCACGGGCTTCTCCTTCCAATAAAGGAAGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGGGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGTTCAACCCCCATTCCTTGGGAGTTCGTGATGTGATTCGTTGTGATCAAATCCATTCCCTTAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTGTGTCAGAGATTCTC-TGTATGTGTCTTGCTTTGACATCTGAAGGATGTAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATATATTATCTATGCAACTTTTTAACAGTTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558210" ref_strand="-" ref_description="SGN-E558210 [17515]">
      <seq>gttctccagtgttgtcttgctgaaatcaagctttacgcttctcttgcagaatagcagtgctaatggtgtttctatgaccaagcaggagtctncnnngctcttgttggaatacctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattgctacccagccaaacctggtcagttccagaagaaaatcagggaagcagaaaccacgggcttctccttccaataaaggaaggaaaaaagactagtcggattttgttgttcctgtccttcatgatgggcaaaagatgcaaagcttcaagatcgaggatgaagttcaacccccattcccttgggagttgtgatgtgattcgttgtgatcaaatccattcccttaggtggatcatggttccttttgagttctttagttttgtgtcagagattctctgtatgtgtcttgctttgacatctgaaggatgtagttcactgttattagttaatgacttatgagctatatatattatctatgcaactttttaacagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="72494" stop="71149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72194" g_stop="72086" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71870" g_stop="71447" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="534" r_length="427" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E558210" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558210" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72194" e_stop="72086"/>
          <exon e_start="71870" e_stop="71447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATT-CTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCA-TCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATA-A-TATCTATGCAACTTTTTAATAGTTCC</genome_strand>
        <mrna_strand>GTTCTCCAGTGTTGTCTTGCTG-AAATCAAGCTTTACGCTTCTC-TTGCAGAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTNCNNNGCTCTTGTTGG.......................................................................................................................................................................................................................AATACCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTGCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAATCAGGGAAGCAGAAACCACGGGCTTCTCCTTCCAATAAAGGAAGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGGGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGTTCAACCCCCATTCCCTTGGGAGTTGTGATGTGATTCGTTGTGATCAAATCCATTCCCTTAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTGTGTCAGAGATTCTC-TGTATGTGTCTTGCTTTGACATCTGAAGGATGTAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATATATTATCTATGCAACTTTTTAACAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546489" ref_strand="+" ref_description="SGN-E546489 [TUS-69-O3](-)">
      <seq>atcccaaggtttctagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggggacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaacagagatgcagcctgtgaggtcacgagagaggaagaagttgtacgttagggatctagagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaaatcagggaagcagaaaccacgtgcttctggttccaataaaggagggaaaaaagactagtctgattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaaaatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcatagattctcttgtatgtgtcttgctttgacatctgaaggatgtagttcactgttattagttaaggacttatgagctatataatatctatgcaactttttaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73643" stop="71152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73343" g_stop="73235" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="334" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71452" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="753" r_length="419" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="754" polyA_stop="763"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E546489" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73343" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAG-CTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</genome_strand>
        <mrna_strand>ATCCCAAGGTTTCTAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGGGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAACAGAGATGCAGCCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTAGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAATCAGGGAAGCAGAAACCACGTGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCTGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAAATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCATAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGTAGTTCACTGTTATTAGTTAAGGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296227" ref_strand="+" ref_description="SGN-E296227 [cLET-24-O16]">
      <seq>tgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcagagattctcttgtatgtgtcttgctttgacatctgaaggatgaagttcactgttattagttaatgacttatgagctatataatatctatgcaactttttaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="72171" stop="71152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72102" g_stop="72086" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71870" g_stop="71452" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="436" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="448"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E296227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72102" e_stop="72086"/>
          <exon e_start="71870" e_stop="71452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</genome_strand>
        <mrna_strand>TGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701637" ref_strand="+" ref_description="SGN-E701637 [FA16CB07]">
      <seq>actcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcagagattctcttgnatgtgtcttgctttgacatctgaaggatgaagttcactgttattagttaatgacttatgagctatataatatctatgcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73827" stop="71161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73527" g_stop="73235" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="517" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71461" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="927" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E701637" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>927</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73527" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAAC</genome_strand>
        <mrna_strand>ACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGNATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583890" ref_strand="+" ref_description="SGN-E583890 [9711]">
      <seq>catactttgaatcagaatgcaaaaggctggggtttgtctctccagtgctgtcttgctgaaaatcgagctttacgcttctctttgcagaatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctcttgtaggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttcctgaagagaatcagggaagcagaaaccacgggcttctccttccaataaaggaaggaaaaaagattagttggattgagttgttcctgtccttcatgatgggcaagagatgcaaagcttcaagatcgatgatgaagttcaaaccccaatccttgggagttgtgatgtgacctcgttgtgatcgcatccattcccttaggtggatcatggttccttttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="72528" stop="71272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72229" g_stop="72086" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71870" g_stop="71572" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="445" r_length="300" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E583890" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72229" e_stop="72086"/>
          <exon e_start="71870" e_stop="71572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGT-TCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGA-CTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGT</genome_strand>
        <mrna_strand>CATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTCTCTCCAGTGCTGTCTTGCTGAAAATCGAGCTTTACGCTTCTCTTTGCAGAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTGTAGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCTGAAGAGAATCAGGGAAGCAGAAACCACGGGCTTCTCCTTCCAATAAAGGAAGGAAAAAAGATTAGTTGGATTGAGTTGTTCCTGTCCTTCATGATGGGCAAGAGATGCAAAGCTTCAAGATCGATGATGAAGTTCAAACCCCAATCCTTGGGAGTTGTGATGTGACCTCGTTGTGATCGCATCCATTCCCTTAGGTGGATCATGGTTCCTTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263588" ref_strand="+" ref_description="SGN-E263588 [cLEG-60-N15]">
      <seq>cgagactaggagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttggggagttgtgatgtgactcgttgtgatcaaatcttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73788" stop="71299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73498" g_stop="73235" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="487" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71599" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="760" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E263588" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73498" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTT-GGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCC</genome_strand>
        <mrna_strand>CGAG-ACTAGGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717600" ref_strand="+" ref_description="SGN-E717600 [FC02AG11]">
      <seq>ccatggggatccgatgacatccagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccctcatgatgagcaaaagatgcaaagcttcaagatctaggatgaagctcaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73993" stop="71348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73690" g_stop="73235" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="474" r_length="456" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="698" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71648" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="921" r_length="223" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E717600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73690" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCC</genome_strand>
        <mrna_strand>ATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCCTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCTAGGATGAAGCTCAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702612" ref_strand="+" ref_description="SGN-E702612 [FA19AH02]">
      <seq>cagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73987" stop="71373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73687" g_stop="73235" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="677" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71673" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="875" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E702612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73687" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTT</genome_strand>
        <mrna_strand>CAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726797" ref_strand="+" ref_description="SGN-E726797 [LA12DD07]">
      <seq>gtgattattaaattggggacatccagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttngtgntcctgtccttcatgatgagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="74010" stop="71386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73710" g_stop="73235" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="700" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71686" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="885" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E726797" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73710" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAA</genome_strand>
        <mrna_strand>GTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTNGTGNTCCTGTCCTTCATGATGAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701574" ref_strand="+" ref_description="SGN-E701574 [FA16BD12]">
      <seq>ctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctggggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgcccttcatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73954" stop="71392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73654" g_stop="73235" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="644" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71692" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="824" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E701574" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73654" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCT-GGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATG</genome_strand>
        <mrna_strand>CTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGCCCTTCATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699169" ref_strand="+" ref_description="SGN-E699169 [FA08DG09]">
      <seq>cattacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaaaactagtcggattttgttgttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73910" stop="71405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73611" g_stop="73235" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="601" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71705" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="767" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E699169" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73611" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCT</genome_strand>
        <mrna_strand>CATTACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAAACTAGTCGGATTTTGTTGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211562" ref_strand="+" ref_description="SGN-E211562 [cLEC-67-I5]">
      <seq>ggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactanacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaaatcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73959" stop="71786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73659" g_stop="73235" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="649" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71861" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="659" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E211562" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73659" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCT</genome_strand>
        <mrna_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTANACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AAATCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698195" ref_strand="+" ref_description="SGN-E698195 [FA05CC03]">
      <seq>cgatgtaattaaaaacttggaatttcgttgaaagtgtttggagccttaacctctaagacacctaacgtgattattaaattggggacatccagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagggctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="74076" stop="71786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73776" g_stop="73235" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="766" r_length="224" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71862" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="775" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E698195" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73776" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTAATTAAAAACTTGGAATTTCGTTGAAAGTGTTTGGAGCCTTAACCTCTAAGACACCTAACGTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGC</genome_strand>
        <mrna_strand>CGATGTAATTAAAAACTTGGAATTTCGTTGAAAGTGTTTGGAGCCTTAACCTCTAAGACACCTAACGTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGGGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348892" ref_strand="+" ref_description="SGN-E348892 [cTOF-29-E15]">
      <seq>gtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaagctgggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcatatagcagtgtaatgggtgtttctatgaccaagcangagtctgccgtgctctttttggaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73951" stop="71786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73651" g_stop="73235" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="640" r_length="223" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71866" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="645" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E348892" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73651" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCC</genome_strand>
        <mrna_strand>GTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGCTGGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCAT-ATAGCAGTGTAATGGGTGTTTCTATGACCAAGCANGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272527" ref_strand="+" ref_description="SGN-E272527 [cLEM-21-O15]">
      <seq>gtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73878" stop="71815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73578" g_stop="73235" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72115" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="539" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E272527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73578" e_stop="73235"/>
          <exon e_start="72309" e_stop="72115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGAC</genome_strand>
        <mrna_strand>GTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305540" ref_strand="+" ref_description="SGN-E305540 [cLEX-14-E9]">
      <seq>tagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73953" stop="71817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73653" g_stop="73235" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72117" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="612" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E305540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73653" e_stop="73235"/>
          <exon e_start="72309" e_stop="72117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATG</genome_strand>
        <mrna_strand>TAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367076" ref_strand="+" ref_description="SGN-E367076 [cLPT-5-C4]">
      <seq>ctagtttctttaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatttctttccgacttcctcgtcgattctcctctccactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttctagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaacagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73954" stop="71909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73654" g_stop="73235" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72209" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="521" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E367076" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73654" e_stop="73235"/>
          <exon e_start="72309" e_stop="72209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCA</genome_strand>
        <mrna_strand>CTAGTTTCTTTACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATTTCTTTCCGACTTCCTCGTCGATTCTCCTCTCCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCTAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAACAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304077" ref_strand="+" ref_description="SGN-E304077 [cLEX-6-F1]">
      <seq>ggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttgccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73959" stop="71911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73659" g_stop="73235" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72211" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="524" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E304077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73659" e_stop="73235"/>
          <exon e_start="72309" e_stop="72211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATG</genome_strand>
        <mrna_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTGCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286585" ref_strand="+" ref_description="SGN-E286585 [cLES-12-M7]">
      <seq>gaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgatggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73774" stop="71912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73474" g_stop="73235" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72212" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="338" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E286585" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73474" e_stop="73235"/>
          <exon e_start="72309" e_stop="72212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAAT</genome_strand>
        <mrna_strand>GAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGATGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306193" ref_strand="+" ref_description="SGN-E306193 [cLEY-13-D5]">
      <seq>ggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73959" stop="71990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73659" g_stop="73235" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72290" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="445" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E306193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73659" e_stop="73235"/>
          <exon e_start="72309" e_stop="72290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATG</genome_strand>
        <mrna_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201671" ref_strand="+" ref_description="SGN-E201671 [cLEC-11-F4]">
      <seq>gacatccagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacnaactaaacaaccatgaccccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73993" stop="72952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73693" g_stop="73252" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E201671" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73693" e_stop="73252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTC</genome_strand>
        <mrna_strand>GACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACNAACTAAACAACCATGACCCCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397044" ref_strand="+" ref_description="SGN-E397044 [TUS-44-D16]">
      <seq>gtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcacgacaaacacaaggtttcccagtcgccttctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73962" stop="72985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73662" g_stop="73285" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E397044" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73662" e_stop="73285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGAC</genome_strand>
        <mrna_strand>GTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCACGACAAACACAAGGTTTCCCAGTCGCCTTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283780" ref_strand="+" ref_description="SGN-E283780 [cLES-1-O5]">
      <seq>ggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatctttcacaacgttctagacaatcccgacgatgatcaattcactcttcatgattccttcccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgccgattctcctcttcactccgatcattctgactctgctgctgaacaagccattggattctccgatcccaagggttcaagtgccgatcaggacaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73959" stop="73008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73659" g_stop="73308" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E283780" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73659" e_stop="73308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACA</genome_strand>
        <mrna_strand>GGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTTCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTTCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGCCGATTCTCCTCTTCACTCCGATCATTCTGACTCTGCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGGTTCAAGTGCCGATCAGGACAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300559" ref_strand="+" ref_description="SGN-E300559 [cLET-45-A2]">
      <seq>tcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatccctgcgatgatcaattcactcttcatgattcctccccacagtcattccatcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73913" stop="73142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73613" g_stop="73442" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E300559" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73613" e_stop="73442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCC</genome_strand>
        <mrna_strand>TCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCTGCGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCATCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543565" ref_strand="+" ref_description="SGN-E543565 [TUS-65-H4]">
      <seq>ccaaagcagcagaggaggagataacagaacaccagcttccaatgagaagctttggcacactgttggctaggggggaagctcgaaaccaaacaacaggaacttctgaattgtcccggaagaaaatgaaaccagatagagctcaggggagcctattttccatttacaaagatgcaaatgccggaatgtcatcaactcttcaatcagaaataccaaagctagagaatacatcatggcactgtcttggtgcccgagcagataggaacaaggagaatcaggcaatcccttcaaagtggacatctaataagattcctcaaagacacgggcttagaaatcgaggagctactactaccaccactccgtgcctagagatctttgtggatgaggaatgtgccaaagcacaggagaaggactctgctgctggtgtaaaggcttctagtctgcagcttagacgaggagatgacaaagacataaaaaaggagactgagttgctgagggagaatcccctgcgttattttccaccaagctcattaccaagatgatcgatctcacagaagaaagtcatcattgtgtgctgggatttctcatctcagagttactcaacttgtatcttaaaagtgtatggagacaattcctctttgcccagtgcaagcaccgttacagatgttctaaatatatcgagtggagttgaggagacattgttggaatgttttggtttttggcaggcttgagccaaatcctccagtattttggtatttagatggaatgattttatatgattgcaacagttattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="76533" stop="74412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76318" g_stop="76305" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76304" i_stop="76232" i_length="73">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76231" g_stop="76165" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="81" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76164" i_stop="76094" i_length="71">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76093" g_stop="76039" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="136" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76038" i_stop="75693" i_length="346">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75692" g_stop="75524" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="305" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75523" i_stop="75428" i_length="96">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75427" g_stop="75339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="394" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75338" i_stop="75178" i_length="161">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75177" g_stop="75097" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="475" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75096" i_stop="75027" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75026" g_stop="74712" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="793" r_length="318" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E543565" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76318" e_stop="76305"/>
          <exon e_start="76231" e_stop="76165"/>
          <exon e_start="76093" e_stop="76039"/>
          <exon e_start="75692" e_stop="75524"/>
          <exon e_start="75427" e_stop="75339"/>
          <exon e_start="75177" e_stop="75097"/>
          <exon e_start="75026" e_stop="74712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGCAGCAGAGGTATCAATTATTGTGACGACTTAAGTCCATTGTCGTTTGCTTTGATTTGAATTTGTGACGATTTGTATTTCAGGAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTCGTAAGTGCATTTCTATGTCGTAGCTTCAGGGTGTCTGCTTGCTTTGGTTAACATTGTTTTTGCCTTTGCAGGAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAGGTAAGTGTGAGTCACTATTGTTTTCTCCCAAGTTACGTTCTTGTGTCCCTGCATTTTTCATAGTAACACCATGAGTTAAACAAATCTATGTCGTTATTACTTGTTCTTATCATCACATAGTTAAGCTGCTATGTCAGGCAAGAGATCTGATTCTGATGAGTTCTTGTTTTAAATACCTTAAATCCTTTGCAATGTGGAAAAGAACTTTTTGTTGTTATTGCTGCCTATTCCATAACTTGAAGGAAAAGGAGTGTAAGGATGCTGATAACAAGGTTGCAGGAAATACTTACCTTTTTGCATGCCCAGTTCTAGTAGAAACACTGGCTCATTTTTATCTATTTTGCAGAGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAGGTCCGTTTGAGTCCAGAGAGTTCAAAATAGAATATTTGATTTTTTGTCCAAACAGATAGGAACAAGAAAACTCATTAACAAAAATATTTCTTACAGATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAAGTGAGTACCCATATAGATACAATGGTTTTTTGAGTGCGAACAACACATAGTTAACACTTAACAGTGTGTGTACATGCATCAAGACAAGGAGATTTTCAGCTATTGTAATAGTGTTAGTTTGTGGATTGACTTTCTTTGTTGCCCCCCTTCATCTTTGGCAGAGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAAGTAAGTATCAAGTTTGTTTCTTCACTTCAATAAAAAGAAAGCACCTTTTTGACAATGCACTTGTATGCAGGGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTCAGAGTTACTCAACTTGTATCTTAAAAGTGTATGGAGACAATTCCTCTTTGCCCAGTGCAAGCACCGTTACAGATGTTCTAAATATATCGAGTGGAGTTGAGGAGACATTGTT-GTATG-TTTGGT-TTTGGCAGGCTTGAGCCAAATCCTCCAGTATTTTGTTATTTAGATGGAATGATTTTATATGATTGCAACAGTTATTGAT</genome_strand>
        <mrna_strand>CCAAAGCAGCAGAG.........................................................................GAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTC.......................................................................GAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAG..........................................................................................................................................................................................................................................................................................................................................................AGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAG................................................................................................ATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAA.................................................................................................................................................................AGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAA......................................................................GGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTCAGAGTTACTCAACTTGTATCTTAAAAGTGTATGGAGACAATTCCTCTTTGCCCAGTGCAAGCACCGTTACAGATGTTCTAAATATATCGAGTGGAGTTGAGGAGACATTGTTGGAATGTTTTGGTTTTTGGCAGGCTTGAGCCAAATCCTCCAGTATTTTGGTATTTAGATGGAATGATTTTATATGATTGCAACAGTTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304956" ref_strand="+" ref_description="SGN-E304956 [cLEX-10-P1]">
      <seq>caaagcagcagaggaggagataacagaacaccagcttccaatgagaagctttggcacactgttggctaggggggaagctcgaaaccaaacaacaggaacttctgaattgtcccggaagaaaatgaaaccagatagagctcaggggagcctattttccatttacaaagatgcaaatgccggaatgtcatcaactcttcaatcagaaataccaaagctagagaatacatcatggcactgtcttggtgcccgagcagataggaacaaggagaatcaggcaatcccttcaaagtggacatctaataagattcctcaaagacacgggcttagaaatcgaggagctactactaccaccactccgtgcctagagatctttgtggatgaggaatgtgccaaagcacaggagaaagactctgctgctggtgtaaaggcttctagtctgcagcttagacgaggagatgacaaagacataaaaaaggagactgagttgctgaaggagaatcccctgcgttattttccaccaagctcattaccaagatgatcgatctcacagaagaaagtcatcattgtgtgctgggatttctcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="76533" stop="74614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76317" g_stop="76305" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76304" i_stop="76232" i_length="73">
            <donor d_prob="0.985" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76231" g_stop="76165" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="80" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76164" i_stop="76094" i_length="71">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76093" g_stop="76039" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="135" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76038" i_stop="75693" i_length="346">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75692" g_stop="75524" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="304" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75523" i_stop="75428" i_length="96">
            <donor d_prob="0.907" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75427" g_stop="75339" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="393" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75338" i_stop="75178" i_length="161">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75177" g_stop="75097" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="474" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75096" i_stop="75027" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75026" g_stop="74914" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="587" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E304956" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76317" e_stop="76305"/>
          <exon e_start="76231" e_stop="76165"/>
          <exon e_start="76093" e_stop="76039"/>
          <exon e_start="75692" e_stop="75524"/>
          <exon e_start="75427" e_stop="75339"/>
          <exon e_start="75177" e_stop="75097"/>
          <exon e_start="75026" e_stop="74914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAGCAGAGGTATCAATTATTGTGACGACTTAAGTCCATTGTCGTTTGCTTTGATTTGAATTTGTGACGATTTGTATTTCAGGAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTCGTAAGTGCATTTCTATGTCGTAGCTTCAGGGTGTCTGCTTGCTTTGGTTAACATTGTTTTTGCCTTTGCAGGAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAGGTAAGTGTGAGTCACTATTGTTTTCTCCCAAGTTACGTTCTTGTGTCCCTGCATTTTTCATAGTAACACCATGAGTTAAACAAATCTATGTCGTTATTACTTGTTCTTATCATCACATAGTTAAGCTGCTATGTCAGGCAAGAGATCTGATTCTGATGAGTTCTTGTTTTAAATACCTTAAATCCTTTGCAATGTGGAAAAGAACTTTTTGTTGTTATTGCTGCCTATTCCATAACTTGAAGGAAAAGGAGTGTAAGGATGCTGATAACAAGGTTGCAGGAAATACTTACCTTTTTGCATGCCCAGTTCTAGTAGAAACACTGGCTCATTTTTATCTATTTTGCAGAGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAGGTCCGTTTGAGTCCAGAGAGTTCAAAATAGAATATTTGATTTTTTGTCCAAACAGATAGGAACAAGAAAACTCATTAACAAAAATATTTCTTACAGATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAAGTGAGTACCCATATAGATACAATGGTTTTTTGAGTGCGAACAACACATAGTTAACACTTAACAGTGTGTGTACATGCATCAAGACAAGGAGATTTTCAGCTATTGTAATAGTGTTAGTTTGTGGATTGACTTTCTTTGTTGCCCCCCTTCATCTTTGGCAGAGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAAGTAAGTATCAAGTTTGTTTCTTCACTTCAATAAAAAGAAAGCACCTTTTTGACAATGCACTTGTATGCAGGGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTC</genome_strand>
        <mrna_strand>CAAAGCAGCAGAG.........................................................................GAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTC.......................................................................GAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAG..........................................................................................................................................................................................................................................................................................................................................................AGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAG................................................................................................ATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAA.................................................................................................................................................................AGCACAGGAGAAAGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAA......................................................................GGAGACTGAGTTGCTGAAGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702452" ref_strand="+" ref_description="SGN-E702452 [FA18DA09]">
      <seq>aatattgcgaaaatctggaatttaaaggagggtccaacggctatgaaaggaagggtttagggcacaaaacaatttcaaatttgaaagaaggctctcaaaaaaacaccaccacaaggaagcagcaagaagaagaaatggagaaggtaggaggagattacgtattggataaggaggcagagttcttagcgtcgaagcaagagactggtcacgagtgggaactcttcaaggaaaatgtcagacctttgaagagaggacgcaacgttaatcttctcaataatgctcttaagtctagtaccgattatcaactcaagaaatctcttcttgacaaacgaagggaatttattgaagcaattgacaagtacaaaggtgaagatcctcttcacccatggctccagtgcatcaagtgggtgcaagaggctttccctcccggtggggacagttctggacttatagttatttatgaacaatgtgtccgcaccttttggcacgatgaactatataagaatgacctccgttacttgaaagtgtggctggaatatgctgaaaattgtatggatgctgaagtcatttatagctttctggaggctaacaaaattggactgacacattcttcattctacatagcctatgctttgcacatggaatctcaaaataaaattaaaacagcaaacgagatcttcaatcgggggctatctatgaatgcagaacctgaagagaaattgaaagtatcctacaagaagtttttcagtcgttcaatgggtcgccccaaagcagcagaggaggagataacagaacaccagcttccaatgagaagctttggcacactgttggctangggggaagctcgaacccaacaacaggaacttctgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="79523" stop="75766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79223" g_stop="78890" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78889" i_stop="78715" i_length="175">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78714" g_stop="78655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="394" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78654" i_stop="78532" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78531" g_stop="78387" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="539" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78386" i_stop="78293" i_length="94">
            <donor d_prob="0.188" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78292" g_stop="78135" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="697" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78134" i_stop="76387" i_length="1748">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="76386" g_stop="76305" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="779" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="76304" i_stop="76232" i_length="73">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="76231" g_stop="76165" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="780" r_stop="846" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="76164" i_stop="76094" i_length="71">
            <donor d_prob="0.964" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="76093" g_stop="76066" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="873" r_length="27" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E702452" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79223" e_stop="78890"/>
          <exon e_start="78714" e_stop="78655"/>
          <exon e_start="78531" e_stop="78387"/>
          <exon e_start="78292" e_stop="78135"/>
          <exon e_start="76386" e_stop="76305"/>
          <exon e_start="76231" e_stop="76165"/>
          <exon e_start="76093" e_stop="76066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTGCGAAAATCTGGAATTTAAAGGAGGGTCCAACGGCTATGAAAGGAAGGGTTTAGGGCACAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAGGTTCCTCTATTTCTTCTTCTTTGCATTTTCATGACATTTACTCCTGAGGTTGGTCCAAAATGCAATTACTATTCCATCCCGCACTAGATTTTGATTAAGATGTACACGCTAGTTGTAGAATAGTAGCAGTTGCTGCATCCCTTATTAATTTTTGAATTCAACTCTTTCTGATTAGGGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCAGTGAGTGCTCTTCTTTTCAGATGCAAATAATTTTTCAACTCTTATATCTTCTACTAGCATTTAATGAGTCAATCTCTGTTATTGAATAAACTGCTGACATAATTTTACATTAAAATTGTGAAGGTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATATGTGAGTTTGATTTCTCCACATCCATTCTTTTGCCCCTAAATCTTCTCATCATGCAATTTGGTAAATCAGTTTTCTTATTGATGGCTCTTTGCAGGCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAAATTAAAACAGCAAACGAGATCTTCAATCGGGGGCTATCTATGTAAGTTGTGTTTCCATTGAGCCTTGGTTTAATTTTAGCCGTAAAGTTAGGTTCTTGCATAGTTAACATTGTGTTTCACTTCACACTAGGCAAGTGAACACGTCTTGGTTCCAGAGAAGTTATGCTATATGTTGTCTATGATGTGAGATGCATCATTCAAATGGTTTATTGAATTGCTGTCTGATATTTTTGTTCAAATAGCGTTTGATATGTCAAGTCTAATGATGTCTACGAAAGTTGCATTAATTGTATGCTAGTATTGAGTAATGTGTGGGGGCTGGGGGGGGGGGGAGGGGATTTATGTTTGAAGCTTCGCCAAAATGAGTTCAGTGTTAAGTATGAAGCTGCACGGATAAGTATGTGGTGTCCCCTTCATATTGACCTACTAATTTTCATACCTTGAATACTAAGACAATTTCATTTGATAAGCTCAGAGGTCAGAACTGTGGTAGATTACATTGCTTACGGTCCCTTATTTTATGTTCTTTCAATATATGCTCATGTGACCGAATAATAAACTAAAGGCCGTGATCGTATGACAGTGGTATGCTTCTAGAAAACTTTATAATTATTAATTGCCATATGATGAACATATTTGATATCCTTATTAAGGAAATTTTGTATAAGCCGAGTAATATGATTATGAAGAACTACATGTATCTTTTTGAATTATGAAATGATTGGTTCCTTTATAGGCATCAATTGAATCAGATAGTACCATGTCACACAATTATGTTAAGCATTTGTACAGGATGAACAACAGAGACGTTATCATTGAGAAATTTGTGCTCTGGAATTAATCATTTATTTAGCTAATATAGATATTTCAGGTATGGCAGCATGCAAAATAGCCAGTGCCACTGTTCATTGAACTTTGCTTAATTACACAACCTAATCATGTTGTTTGTAACTTGTATAGCATGATTTTCTACTAAGAGCATTTCATGCCTTCAAAACAGCAAGTCTCTGTATGTGTTTCTAATAAAATGCTCTAGCTATCAACTGTTGACATAAGAATATATTGAAATATTTATTTCTTGTTCACATTTGCCTCATTCTTGAGGGACCTTTTATATTCTCTCTCTACTTGTTTTAACTTCTGATGGGGATGTGAATGCTATGATGCTGGCCAAACTTGCTGGCAGAATAATGCTACAGCAAGGTGAAAATTCTAATATATTTGGCATGATATTATTGTGGATGCTCAATTGGTTTTAGATATTACCTGACACCTAAATACCTTTGGGGGTAGTTTGGTTGTTGGATAGAGTTGTGCAGGTATTAGTTATGTAGGGTTCAATTATTTACGTATTACTAATTCATGTATTAGTTATACCATCTTCAAAGCTGCATAAAATAATACATAGATTGACGCCTAACTAGTACATGTTTTAGTTATGTGAGATTGTAAACCGTAAGCAAAAAACCATACTTGATGTGCTGAGTTTTATACATAGCAACTAAAATGCTGCCAAAAATGGTACTAGTTTATGCAGATTTTAATATATGAATAATCTAACCAACAACTAAACGACCCCTTGGGCTGCCTCAACAAGATTGTGGATGCTCTTTTTTCAAGCTTTCTTAGCCACTAATGAGTCTTTTCCATTAGAGATACAGTTAATACAAGTACAGAACACTGATTACACCAAGTAACCTTCCTCCTGCTTGTTCTCATCCACTTATAAGCCTATTTACTGACTCCCTCAGCTGGTTTATGATTAAAATTTCCGTCTCCAATGAATCAGGAATGCAGAACCTGAAGAGAAATTGAAAGTATCCTACAAGAAGTTTTTCAGTCGTTCAATGGGTCGCCCCAAAGCAGCAGAGGTATCAATTATTGTGACGACTTAAGTCCATTGTCGTTTGCTTTGATTTGAATTTGTGACGATTTGTATTTCAGGAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTCGTAAGTGCATTTCTATGTCGTAGCTTCAGGGTGTCTGCTTGCTTTGGTTAACATTGTTTTTGCCTTTGCAGGAAACCAAACAACAGGAACTTCTGAATT</genome_strand>
        <mrna_strand>AATATTGCGAAAATCTGGAATTTAAAGGAGGGTCCAACGGCTATGAAAGGAAGGGTTTAGGGCACAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAG...............................................................................................................................................................................GGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCA...........................................................................................................................GTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATAT..............................................................................................GCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAAATTAAAACAGCAAACGAGATCTTCAATCGGGGGCTATCTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCAGAACCTGAAGAGAAATTGAAAGTATCCTACAAGAAGTTTTTCAGTCGTTCAATGGGTCGCCCCAAAGCAGCAGAG.........................................................................GAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTANGGGGGAAGCTC.......................................................................G-AACCCAACAACAGGAACTTCTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567316" ref_strand="+" ref_description="SGN-E567316 [11423]">
      <seq>ggaagggtttagggattcatcaacacaatttcaaatttgaaagaaggctctcacgaaaacaccaccacaaggaagcaggaagaagaagaaggaatggagaaggtaggagattacatattggatccagagacagagttcttagcgtcgaagcaagagactggtcacgagtgggaactcttcaaggaaaatgtcagacctttgaagagaggacgcaacgttaatcttctcaatgatgctcttaagtctagtaccgattatcaactcaagaaatctcttcttgacaaacgaagggcgttgattggagcaattgaccagtacaaaggtgaagatcctcttctgccatggctccagtgcatcaagtgggtgcaagaggctttccctcccggtggggacagttctggacttatagttatttatgagcaatgtgtccgcaccttttggcacgaagaacgatataaggatgacctccgttacttgaaagtgtggctggaatatgctgaaaattgtatggatgctgaagtcatttatagctttctggaggctaacaaaattggactgacgcattcttcattctacatagcctatgctttgcacatggaatctcataataaacattaaaccaggaaacgagatcttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="79461" stop="77849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79175" g_stop="78890" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78889" i_stop="78715" i_length="175">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78714" g_stop="78655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="350" r_length="60" r_score="0.883"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78654" i_stop="78532" i_length="123">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78531" g_stop="78387" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="495" r_length="145" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78386" i_stop="78293" i_length="94">
            <donor d_prob="0.188" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78292" g_stop="78149" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="640" r_length="145" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E567316" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79175" e_stop="78890"/>
          <exon e_start="78714" e_stop="78655"/>
          <exon e_start="78531" e_stop="78387"/>
          <exon e_start="78292" e_stop="78149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGGTTTAGGG---CA-CAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAGGTTCCTCTATTTCTTCTTCTTTGCATTTTCATGACATTTACTCCTGAGGTTGGTCCAAAATGCAATTACTATTCCATCCCGCACTAGATTTTGATTAAGATGTACACGCTAGTTGTAGAATAGTAGCAGTTGCTGCATCCCTTATTAATTTTTGAATTCAACTCTTTCTGATTAGGGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCAGTGAGTGCTCTTCTTTTCAGATGCAAATAATTTTTCAACTCTTATATCTTCTACTAGCATTTAATGAGTCAATCTCTGTTATTGAATAAACTGCTGACATAATTTTACATTAAAATTGTGAAGGTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATATGTGAGTTTGATTTCTCCACATCCATTCTTTTGCCCCTAAATCTTCTCATCATGCAATTTGGTAAATCAGTTTTCTTATTGATGGCTCTTTGCAGGCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAA-ATTAAAACAGCAAACGAGATCTTCAAT</genome_strand>
        <mrna_strand>GGAAGGGTTTAGGGATTCATCAACACAATTTCAAATTTGAAAGAAGGCTCTCACGAAAACACCACCACAAGGAAGCAGGAAGAAGAAGAAGGAATGGAGAAGGTAGGAGATTACATATTGGATCCAGAGACAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATGATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAG...............................................................................................................................................................................GGCGTTGATTGGAGCAATTGACCAGTACAAAGGTGAAGATCCTCTTCTGCCATGGCTCCA...........................................................................................................................GTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAGCAATGTGTCCGCACCTTTTGGCACGAAGAACGATATAAGGATGACCTCCGTTACTTGAAAGTGTGGCTGGAATAT..............................................................................................GCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACGCATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCATAATAAACATTAAACCAGGAAACGAGATCTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733304" ref_strand="+" ref_description="SGN-E733304 [LB04CA12]">
      <seq>ccattcaacagacatccgaaaaaagtcatctataataaataattgtgatggctttgaacttgaagcaggcatctatattcccaattcatgttgctagtgtaactggatccaggaggaaaggagtgcaaaaggtgatgatgatgatgagtggatcagcaggagtaccaaagtataaggggacgcagatgagagaaaaacagctgacggaaatgatagagaagaaagtgaaggaagctaaggaggtatgcagtgaagacgccagatcggacgagtgcaaggtggcatgggatgaggtggaagaagttagctaggctaaggtgcatttgcgcatcaagcttcagcttaatcaagatccccttgaaccttactgtcaaaataaccctgacgccgacgagtgccgcacctatgaccattaattaattaattattaggatttcactcttgttgtacttggacttgtctactgtatttctctccaatttagtatgattacagttaattactagtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81049" stop="82159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81347" g_stop="81859" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="527"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E733304" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81347" e_stop="81859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAA</genome_strand>
        <mrna_strand>CCATTCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623200" ref_strand="-" ref_description="SGN-E623200 [88290]">
      <seq>caaaaacctcatctcatttccagcttaattgtgatggcgctgaacttgaagcaggcatcaatattcccaatccatgttgctagtgtaactggatccacgaggaaaggagtgcaaaaggtgttgatgaatggatcaggatcagcaggagtaccaaagtataaggggacgcagatgagagagaaacagctgacggaaatgatagagaagaaagtgaaggaagctaaggaggtgtgcggtgaagacgccaggtcggacgagtgcaaggtggcatgggatgaggtggaagaagtaagccaggctaaggcccatctgcgtatcaagcttcagctcaatcaagatccccttgaaccttactgtcaagataaccctgacgccgacgagtgccgcacctatgaccattaattaattattattcggatttcactgttgttgtacttctactcctctaatgtatttctctccaatttagtatgattaaagttaattactagtaaaaaaaaaaaaaaaaaactcaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81086" stop="82159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81386" g_stop="81859" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="498" r_length="473" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="511"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E623200" ref_strand="-">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E623200" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81386" e_stop="81859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATG-AT-GATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAA</genome_strand>
        <mrna_strand>TAATTGTGATGGCGCTGAACTTGAAGCAGGCATCAATATTCCCAATCCATGTTGCTAGTGTAACTGGATCCACGAGGAAAGGAGTGCAAAAGGTGTTGATGAATGGATCA--GGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAGAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTGTGCGGTGAAGACGCCAGGTCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTAAGCCAGGCTAAGGCCCATCTGCGTATCAAGCTTCAGCTCAATCAAGATCCCCTTGAACCTTACTGTCAAGATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATT-ATTATTCGGATTTCACTGTTGTTGTACTTCTACTCCTCTAATGTATTTCTCTCCAATTTAGTATGATTAAAGTTAATTACTAGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612603" ref_strand="+" ref_description="SGN-E612603 [62367]">
      <seq>atccatgttgctagtgtaactggatccacgaggaaaggagtgcaaaaggtgatgatgagtggatcaggatcggcaggagtaccaaagtataaggggacgcagatgagagagaaacagctgacggaaatgatagagaagaaagtgaaggaagctaaggaggtgtgcggtgaagacgccaggtcggacgagtgcaaggtggcatgggatgaggtggaagaagtaagccaggctaaggcccatctgcgtatcaagcttcagctcaatcaagatccccttgaaccttactgtcaagataaccctgacgccgacgagtgccgcacctatgaccattaattaattattattcggatttcactgctgttgtacttctactcctctaatgtatttctctccaatttagtatgattaaagttaattactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81130" stop="82159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81430" g_stop="81860" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E612603" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81430" e_stop="81860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAAC</genome_strand>
        <mrna_strand>ATCCATGTTGCTAGTGTAACTGGATCCACGAGGAAAGGAGTGCAAAAGGTGATGATGAGTGGATCAGGATCGGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAGAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTGTGCGGTGAAGACGCCAGGTCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTAAGCCAGGCTAAGGCCCATCTGCGTATCAAGCTTCAGCTCAATCAAGATCCCCTTGAACCTTACTGTCAAGATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATT-ATTATTCGGATTTCACTGCTGTTGTACTTCTACTCCTCTAATGTATTTCTCTCCAATTTAGTATGATTAAAGTTAATTACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242592" ref_strand="-" ref_description="SGN-E242592 [cLED-30-F10]">
      <seq>gaagaaagtgaaggaagctaaggaggtatgcagtgaagacgccagatcggacgagtgcaaggtggcatgggatgaggtggaagaagttagctaggctaaggtgcatttgcgcatcaagcttcagcttaatcaagatccccttgaaccttactgtcaaaataaccctgacgccgacgagtgccgcacctatgaccattaattaattaattattaggatttcactcttgttgtacttggacttgtctactgtatttctctccaatttagtatgattacagttaattactagtacaaaaccctccatctgcttttcaggtttgttatattagtgtatcttcactgctttatgaagcatttgttaggtaagttcaaatgtcatgtccatatatatacagacgaataaaacaagtagatattgagcgacgttaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81264" stop="82293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81564" g_stop="81992" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="430" polyA_stop="451"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E242592" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242592" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81564" e_stop="81992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</genome_strand>
        <mrna_strand>GAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240784" ref_strand="-" ref_description="SGN-E240784 [cLED-24-M2]">
      <seq>cagatcggacgagtgcaaggtggcatgggatgaggtggaagaagttagctaggctaaggtgcatttgcgcatcaagcttcagcttaatcaagatccccttgaaccttactgtcaaaataaccctgacgccgacgagtgccgcacctatgaccattaattaattaattattaggatttcactcttgttgtacttggacttgtctactgtatttctctccaatttagtatgattacagttaattactagtacaaaaccctccatctgcttttcaggtttgttatattagtgtatcttcactgctttatgaagcatttgttaggtaagttcaaatgtcatgtccatatatatacagacgaataaaacaagtagatattgagcgccgttaaaaccaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81306" stop="82298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81606" g_stop="81992" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="409"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E240784" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240784" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81606" e_stop="81992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</genome_strand>
        <mrna_strand>CAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGCCGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612189" ref_strand="+" ref_description="SGN-E612189 [61949]">
      <seq>ctgcgtatcaagcttcagctcaatcaagatccccttgaaccttactgtcaagataaccctgacgccgacgagtgccgcacctatgaccattaattaattattattcggatttcactgctgttgtacttctactcctctaatgtatttctctccaatttagtatgattaaagttaattactagtacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81371" stop="82159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81670" g_stop="81859" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81860" i_stop="81958" i_length="99">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.711" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81959" g_stop="81968" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="199" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E612189" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81670" e_stop="81859"/>
          <exon e_start="81959" e_stop="81968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAA</genome_strand>
        <mrna_strand>CTGCGTATCAAGCTTCAGCTCAATCAAGATCCCCTTGAACCTTACTGTCAAGATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATT-ATTATTCGGATTTCACTGCTGTTGTACTTCTACTCCTCTAATGTATTTCTCTCCAATTTAGTATGATTAAAGTTAATTACTAGTACAAAA...................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613736" ref_strand="+" ref_description="SGN-E613736 [63514]">
      <seq>ctgcgtatcaagcttcagctcaatcaagatccccttgaaccttactgtcaagataaccctgacgccgacgagtgccgcacctatgaccattaattaattattattcggatttcactgctgttgtacttctactcctctaatgtatttctctccaatttagtatgattaaagttaattactagtacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81371" stop="82159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81670" g_stop="81859" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81860" i_stop="81958" i_length="99">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.711" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81959" g_stop="81968" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="199" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E613736" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81670" e_stop="81859"/>
          <exon e_start="81959" e_stop="81968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAA</genome_strand>
        <mrna_strand>CTGCGTATCAAGCTTCAGCTCAATCAAGATCCCCTTGAACCTTACTGTCAAGATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATT-ATTATTCGGATTTCACTGCTGTTGTACTTCTACTCCTCTAATGTATTTCTCTCCAATTTAGTATGATTAAAGTTAATTACTAGTACAAAA...................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700965" ref_strand="+" ref_description="SGN-E700965 [FA14CF06]">
      <seq>gtcatgacactgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgatggttggaccagaatatgcaaggtattgtggaattgaggctttggaaccgttaggaatttacttgcctggtgacatcaactatcctggaggtgttctttttgatccattgaatctctctaaagatccgatggcttttgaagagctaaaggttaaagaaataaaaaatgggcgccttgctatggttgcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82346" stop="91404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82646" g_stop="82762" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="284" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="431" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="84027" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="564" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84759" g_stop="84851" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="657" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90916" g_stop="91104" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="846" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E700965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82646" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="84027"/>
          <exon e_start="84759" e_stop="84851"/>
          <exon e_start="90916" e_stop="91104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGACACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATGGTGAGTGTAAACACTTGCTCTATGTGTATCCTTCCAGTAATTATTTCTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACATGGTATTAGAGCAGGAACGTTCCTGATTTTCTTACCTCTTTTCTTCTTCAATCTGCGCATCAGATCCTCTGTAAACTCGATTTTTGTTTTTCAAAATACAATGACAAATTCTGCATCTACGAGCACTGCATTAGACAGTGTTCCTTCATCTGGGATTGATGCAGGGAGTCACTTTTACATTCATCCCTCAGACAATCCTGGAGCAGTACTTGTACCAGTTCCTTTCAATGGCACTGGTTTTCATTCATGGCGTCGTAGTGTACTTCGTTCCTTGTCAGTGAAGAACAAGCTAGTGTTCATCAATGGTGAGTGTAAGAGACCAGAGGTGAATGGGTGAGATGTGATGATATGGTCACTTCATGGATTCTCAACTCTCTAGATCGAGACATTACTGATAGTGTTGAATATGTTAATGATGCTTTGGAATTATGGACAGAACTGGAGGATCGATATGATCAGACGAATGGAGCAAAATTGTATCAAACTCAGAAGGAGATAAATGACCTTAATCAAGGTATTCTCGATATCACAACATATTACACTCGTATGAAGAAACTTTGGGAGGAGTTAAACAGTCTGTGTGTTTCAAGTCAGTGTAGTTGTGTGTGTGTATGTGGAGCTAAAGCTAATGTTCAGAAGGCAGAGCAAGACAGACGTTTGATTCAATTTCTGATGGGCTTGAATGTGGTATATACTACAATTAGGGGAAGTATCTTGATGATGAATCCCTTGCCATCCTTGGCACAAGCTTTTGCCTTACTAGTGCAGGAGGAAAAACAACGAGAATTTAAACCAAATAATCAACTGTTTACTGAGAGTAGTTCTCTAGCTGCAGTTTCATCAAGTTCAGGAGGTAGAAGTTTTCAAACAAACTATTCTACCTCCAACACAACACCAAGAGGAAGACCTTTCTGTGACTATTGTAGAAGACCAGGACATGTTAGAGCAAAGTGTTACAAGTTGCATGGCTATCCATCTAATGACACAAATGGCTCTGCTCGTGATCAGCATAATCCAAGGAACACAGTTCAAAACACATATCCAAATCCAAGGCATAACAATAAAGGAAGAGGTACATCAGCAAACTCTGTAAGACTATCCTGTGATGGAGATACTAGTGGACAAACAAAGGAATCAAGTTCAACATCTTGTAATGACCCTCAAGGAAATGAGAACATCAGTATCACCAAGGAGCAATATGATCAAGTTTCTCACTTGCTGAATCAGTTTCAAAATGATGGAGTGTGTGGATCTGTGAACTTTGCAGGTGGTTTTGCTTGCTCTTTTTCTCTTGATTATATCAAACTTTCATGTGAATGTTTCAAAACAAGGACTGACCTATGGATTCTGGACTCAGGAGCCTCTCATCACATGACTTTTAACAAAAATAACCTTGTAAATCCAGTAAATCTACCTTATCCTATGTTAGTCAAATTACCAAATGGATATAGAGTCAAAATCACAGTGGTTGGTAGTGTACATCTTACACCTAAAATCATCTTGTCAGGAGTATTGTATGCCCCCTCATTCAAATACAATTTAATCTCCATCAACTCTCTTGTAAACCATCTTCAATGCACTGTCTCTTTTTCTAACACTTCTTGTCTGTTGCAGGCCCCTTCACTGAAGAGGCCTCTGGAAATTGGTAAGATGCATGATGGCCTTTATTTCCTCTGCTCAGATTGCTTACAAAAGAATTCACATGCTCAACATTATTCCTCTTCCCTTTACTCTTTATCCAGTAATAAAGTACAATGTACATCTCTTTCTTGTAACTCTCATTCAGATGAAATAAACTCTTCTCTTGTTGGTAATAAAGACAATGTTGCTAACAACTCTTTTATTTCTAGTTCCTTTCCTAATGATAGTGTGGATCTGTTGTGGCATTATAGACTTGGTCATGTACCCTTTGTGAAGATGAAAAATATATCTTCCATACCAGCAAAATTCTCATCATGACAACCTTTCTTCTGTCCTATATGTCCCATGGCAAGACAATCCAGATTACCCTTTCCACCAAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTACTCCAAAAGTTCACAGAACTAAGTTTGATCCCAAAACCATACCACATGTGTTTGTTGGATATCCTTATGCTACAAAGGGTTACAAAGTCTTGAACCTATCCACTCAGAAAATCCATGTCTCAAGGGATGTTATTTTCCATGAAACTATATTTCCTTTTGCCATGTCTAAAGACCCTACTCACTTCCCAAAATTTCCTTTCCATTGTGTGTCCCTTCATGATTATCCAACATCATATGATGATCAAGATTACTCCAGTAAAGAAACAACCACATCACCTACTCATATCACACCTGAAAATTCCACTTCACCTACTCATATCACACCTGAAAATTCCACATCCATACCACAGCTTAGAAGATCCCAAAGGCTACATAAGACTCCTACATACTTGACTGACTATGTTCACAATGTACCATCCTCAACTGTTTCAAATTCACAACCACCACAACCACATTCTTTACCCTTGAATGCCCTTTTCACTCTTAAACATTATGTGTCTCCTGATGTCTTTAGTTTTGATAGTCAGTCCTTTATAATGAATATTTCTCATGACTGTGAACCTAATTCATATGAGGAAGCATCTATGGATCCTGCATGGCAAAAGGCAATGACACAAGAGTTCCTTGCCCTGCATGACAACAATACTTGGACTCTCACAAACCTGCCAAAGGATAAGAAGTCTGTTGGTTGTAGGTGGGTTTACAAGGTTAAACACAAGGCTGATGGAAGTGTAGAAAGGTATAAAGCAAGACTTGTAGTAAAGGGATATACTCAACATCATGGCATAGACTATACAGAAACCTTCTCACCTGTGGTCAAGATGACCACTGTGAGAACACTTATTGTTGCTGCTGCAAAGAAACAGTGGAACATACATCAGCTTGATGTGAACAATGCCTTCCTACATGGAGATTTACATGAAGAAGTGTATATGGACATTCCACCAGGTTTGGCCACTCCTCACAAGGATTTAGTTTGCAAATTAAACAAGTCATTGTATGGTTTAAAGCAGGCTAGTAGGCAGTGGTATGAAAAGCTGACTGAGGCACTACACACAAGAGGATATGAACATTCTCCTCATGACTATTCACTGTTTTACAAGAAAAGAGGTGCATCTAATGTCTTTCTAGGTGTTTATGTGGATGATATCTTACTGACAGGAACAGACACTAATGAAATTGATGAGCTAAAAAGGTTCCTTGACAATCAGTTTAAGATCAAAGATCTTGGCAGACTACATTATTTTCTAGGCTTAGAAGTCTTGTACAAAGATGATGGGATTCTGGTTTCTCAGAGAAAGTTTGTGTTGGATCTTCTCAAGGAGTTCAATTGTGATCACATGGCTCCTTTGTCTTCTCCACTAGATCCAAATATCAAGCTAAGATCCCATGAAGGGAAAGTTCTGGATGACCCTACTTATTACAGAAAACTAATTGGCAAGTTGAATTTCCTCACACATACTAGGCTTGATCTCGCTTATGGTGTACAACTTCTCAGTCAGTACATGCAAGATCCTAGAGAGCCTCATCTACATGCTGCTTTTCATATGTTAAGATACCTCAAGAAAGATCCTACTCTAGGTGTTTTCATGTCATCTGCTGCAAACTTTGATGTACAAGCATATTGCGATTCTGATTGGGCTGCTTGTCCTGATTCAAGGAAATCTGTTAGTGGTTACATTGTATTGTTAGGCGACAGTCCTATTAGCTGGAAGTCCAAGAAACAAGAAACAATTTCACTCTCTTCAGCTGAAGCAGAGTACAGATCATTGAGAAAAGTAGTAGGTGAATTAACCTGGTTGCAAAGGTTGTTTGAAGAGCTGAATATATATCAGACTGCACCATTTCCTGTGTTTTGTGATAGCCAAGCAGCCATACATATTGCTAAAAATCCTGTTTTTCATGAACGTACGAAACATATAGAAGTGGATTGTCATTTTGTGAGATCAAAACTCCAAGAAGGGCTCATTTCATTACATCATGTTGATACTACTAATCAGTTGGCAGATGTTCTTACAAAAGCACTTACTGGGATTAAGCATTCTACAATTCTAGACAAATTGGTTTCGATCACCTCTGCTCCAATTTGAGGGGGGGTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACAATTTCAATGCCGTTCTTCATAAAAAAAAAAGAATTATTTCAATTGCCGAATGTGTTGAATGTGAATCACTTTCTGGTTATTTGAATTCTTCTTGTAAACGGTGCATTTTATCTCTTGCAATACACTCATTGTGGGACAAGGTAGGCATTTTGCAGTCGTGGAGATGGTTGCAAGTACAATGAATCTATGAGCTGAAGTAATGCTTTTAGCTCAAGATACAGTTTTCCAAGGTTAAGATAGTGACCCTATAGATCAATCCCTTTCTAGAAAAGCCAATGTAGCTTTGTGTTCAAATGCGTCCATACAGCTGATGCTTGATTGGTTGAATATGATCAATTGATGTCTGCTTCCTTCTGCCATTCTTGTCATAATAATTTAACTGTGCCGATCGAGCAATGCATTTGAGAGTGATGATTTTGTTGAAAAACATTTAATGGTCCATTGGGATAGAATGCAAATGTTGATCTTAAGTTCGAATTAAATGTCTGTTATTGCATTCAAGGGACAGCTTGCTATTTTTCTCTTAAAATCCTAGTGCCAAATGACATATTGAATAATTGTTTATGAGCTATAGCTGGTGAACATGTTGAAACAATTCTCATGGAGATAATCCCATGCCTAGAGAAGAAATAGGACAGTAAATTCTGTAACTGTAGTATATAATCTGGCCATTTCTACACAAAAGAAACCACCATCTAGTTGGAACTTGACTTTGGAAATGGCTTTTTTCACATGAACAATGAGGGAATTTTTACTTGATTTCTTCTGTTCTTGCAATTAACTGTTCTTTCATACTTTTCTGTGCATAGGTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGG</genome_strand>
        <mrna_strand>GTCATGACACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730932" ref_strand="+" ref_description="SGN-E730932 [LA25CF04]">
      <seq>gaggtcactctgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgatggttggaccagaatatgcaaggtattgtggaattgaggctttggaaccgttaggaatttacttgcctggtgacatcaactatcctggaggtgttctttttgatccattgaatctctctaaagatccgatggcttttgaagagctaaaggttaaagaaataaaaaatgggcgccttgctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82350" stop="91395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82646" g_stop="82762" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="284" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="431" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="84027" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="564" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84759" g_stop="84851" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="657" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90916" g_stop="91095" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="837" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E730932" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82646" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="84027"/>
          <exon e_start="84759" e_stop="84851"/>
          <exon e_start="90916" e_stop="91095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATGACACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATGGTGAGTGTAAACACTTGCTCTATGTGTATCCTTCCAGTAATTATTTCTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACATGGTATTAGAGCAGGAACGTTCCTGATTTTCTTACCTCTTTTCTTCTTCAATCTGCGCATCAGATCCTCTGTAAACTCGATTTTTGTTTTTCAAAATACAATGACAAATTCTGCATCTACGAGCACTGCATTAGACAGTGTTCCTTCATCTGGGATTGATGCAGGGAGTCACTTTTACATTCATCCCTCAGACAATCCTGGAGCAGTACTTGTACCAGTTCCTTTCAATGGCACTGGTTTTCATTCATGGCGTCGTAGTGTACTTCGTTCCTTGTCAGTGAAGAACAAGCTAGTGTTCATCAATGGTGAGTGTAAGAGACCAGAGGTGAATGGGTGAGATGTGATGATATGGTCACTTCATGGATTCTCAACTCTCTAGATCGAGACATTACTGATAGTGTTGAATATGTTAATGATGCTTTGGAATTATGGACAGAACTGGAGGATCGATATGATCAGACGAATGGAGCAAAATTGTATCAAACTCAGAAGGAGATAAATGACCTTAATCAAGGTATTCTCGATATCACAACATATTACACTCGTATGAAGAAACTTTGGGAGGAGTTAAACAGTCTGTGTGTTTCAAGTCAGTGTAGTTGTGTGTGTGTATGTGGAGCTAAAGCTAATGTTCAGAAGGCAGAGCAAGACAGACGTTTGATTCAATTTCTGATGGGCTTGAATGTGGTATATACTACAATTAGGGGAAGTATCTTGATGATGAATCCCTTGCCATCCTTGGCACAAGCTTTTGCCTTACTAGTGCAGGAGGAAAAACAACGAGAATTTAAACCAAATAATCAACTGTTTACTGAGAGTAGTTCTCTAGCTGCAGTTTCATCAAGTTCAGGAGGTAGAAGTTTTCAAACAAACTATTCTACCTCCAACACAACACCAAGAGGAAGACCTTTCTGTGACTATTGTAGAAGACCAGGACATGTTAGAGCAAAGTGTTACAAGTTGCATGGCTATCCATCTAATGACACAAATGGCTCTGCTCGTGATCAGCATAATCCAAGGAACACAGTTCAAAACACATATCCAAATCCAAGGCATAACAATAAAGGAAGAGGTACATCAGCAAACTCTGTAAGACTATCCTGTGATGGAGATACTAGTGGACAAACAAAGGAATCAAGTTCAACATCTTGTAATGACCCTCAAGGAAATGAGAACATCAGTATCACCAAGGAGCAATATGATCAAGTTTCTCACTTGCTGAATCAGTTTCAAAATGATGGAGTGTGTGGATCTGTGAACTTTGCAGGTGGTTTTGCTTGCTCTTTTTCTCTTGATTATATCAAACTTTCATGTGAATGTTTCAAAACAAGGACTGACCTATGGATTCTGGACTCAGGAGCCTCTCATCACATGACTTTTAACAAAAATAACCTTGTAAATCCAGTAAATCTACCTTATCCTATGTTAGTCAAATTACCAAATGGATATAGAGTCAAAATCACAGTGGTTGGTAGTGTACATCTTACACCTAAAATCATCTTGTCAGGAGTATTGTATGCCCCCTCATTCAAATACAATTTAATCTCCATCAACTCTCTTGTAAACCATCTTCAATGCACTGTCTCTTTTTCTAACACTTCTTGTCTGTTGCAGGCCCCTTCACTGAAGAGGCCTCTGGAAATTGGTAAGATGCATGATGGCCTTTATTTCCTCTGCTCAGATTGCTTACAAAAGAATTCACATGCTCAACATTATTCCTCTTCCCTTTACTCTTTATCCAGTAATAAAGTACAATGTACATCTCTTTCTTGTAACTCTCATTCAGATGAAATAAACTCTTCTCTTGTTGGTAATAAAGACAATGTTGCTAACAACTCTTTTATTTCTAGTTCCTTTCCTAATGATAGTGTGGATCTGTTGTGGCATTATAGACTTGGTCATGTACCCTTTGTGAAGATGAAAAATATATCTTCCATACCAGCAAAATTCTCATCATGACAACCTTTCTTCTGTCCTATATGTCCCATGGCAAGACAATCCAGATTACCCTTTCCACCAAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTACTCCAAAAGTTCACAGAACTAAGTTTGATCCCAAAACCATACCACATGTGTTTGTTGGATATCCTTATGCTACAAAGGGTTACAAAGTCTTGAACCTATCCACTCAGAAAATCCATGTCTCAAGGGATGTTATTTTCCATGAAACTATATTTCCTTTTGCCATGTCTAAAGACCCTACTCACTTCCCAAAATTTCCTTTCCATTGTGTGTCCCTTCATGATTATCCAACATCATATGATGATCAAGATTACTCCAGTAAAGAAACAACCACATCACCTACTCATATCACACCTGAAAATTCCACTTCACCTACTCATATCACACCTGAAAATTCCACATCCATACCACAGCTTAGAAGATCCCAAAGGCTACATAAGACTCCTACATACTTGACTGACTATGTTCACAATGTACCATCCTCAACTGTTTCAAATTCACAACCACCACAACCACATTCTTTACCCTTGAATGCCCTTTTCACTCTTAAACATTATGTGTCTCCTGATGTCTTTAGTTTTGATAGTCAGTCCTTTATAATGAATATTTCTCATGACTGTGAACCTAATTCATATGAGGAAGCATCTATGGATCCTGCATGGCAAAAGGCAATGACACAAGAGTTCCTTGCCCTGCATGACAACAATACTTGGACTCTCACAAACCTGCCAAAGGATAAGAAGTCTGTTGGTTGTAGGTGGGTTTACAAGGTTAAACACAAGGCTGATGGAAGTGTAGAAAGGTATAAAGCAAGACTTGTAGTAAAGGGATATACTCAACATCATGGCATAGACTATACAGAAACCTTCTCACCTGTGGTCAAGATGACCACTGTGAGAACACTTATTGTTGCTGCTGCAAAGAAACAGTGGAACATACATCAGCTTGATGTGAACAATGCCTTCCTACATGGAGATTTACATGAAGAAGTGTATATGGACATTCCACCAGGTTTGGCCACTCCTCACAAGGATTTAGTTTGCAAATTAAACAAGTCATTGTATGGTTTAAAGCAGGCTAGTAGGCAGTGGTATGAAAAGCTGACTGAGGCACTACACACAAGAGGATATGAACATTCTCCTCATGACTATTCACTGTTTTACAAGAAAAGAGGTGCATCTAATGTCTTTCTAGGTGTTTATGTGGATGATATCTTACTGACAGGAACAGACACTAATGAAATTGATGAGCTAAAAAGGTTCCTTGACAATCAGTTTAAGATCAAAGATCTTGGCAGACTACATTATTTTCTAGGCTTAGAAGTCTTGTACAAAGATGATGGGATTCTGGTTTCTCAGAGAAAGTTTGTGTTGGATCTTCTCAAGGAGTTCAATTGTGATCACATGGCTCCTTTGTCTTCTCCACTAGATCCAAATATCAAGCTAAGATCCCATGAAGGGAAAGTTCTGGATGACCCTACTTATTACAGAAAACTAATTGGCAAGTTGAATTTCCTCACACATACTAGGCTTGATCTCGCTTATGGTGTACAACTTCTCAGTCAGTACATGCAAGATCCTAGAGAGCCTCATCTACATGCTGCTTTTCATATGTTAAGATACCTCAAGAAAGATCCTACTCTAGGTGTTTTCATGTCATCTGCTGCAAACTTTGATGTACAAGCATATTGCGATTCTGATTGGGCTGCTTGTCCTGATTCAAGGAAATCTGTTAGTGGTTACATTGTATTGTTAGGCGACAGTCCTATTAGCTGGAAGTCCAAGAAACAAGAAACAATTTCACTCTCTTCAGCTGAAGCAGAGTACAGATCATTGAGAAAAGTAGTAGGTGAATTAACCTGGTTGCAAAGGTTGTTTGAAGAGCTGAATATATATCAGACTGCACCATTTCCTGTGTTTTGTGATAGCCAAGCAGCCATACATATTGCTAAAAATCCTGTTTTTCATGAACGTACGAAACATATAGAAGTGGATTGTCATTTTGTGAGATCAAAACTCCAAGAAGGGCTCATTTCATTACATCATGTTGATACTACTAATCAGTTGGCAGATGTTCTTACAAAAGCACTTACTGGGATTAAGCATTCTACAATTCTAGACAAATTGGTTTCGATCACCTCTGCTCCAATTTGAGGGGGGGTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACAATTTCAATGCCGTTCTTCATAAAAAAAAAAGAATTATTTCAATTGCCGAATGTGTTGAATGTGAATCACTTTCTGGTTATTTGAATTCTTCTTGTAAACGGTGCATTTTATCTCTTGCAATACACTCATTGTGGGACAAGGTAGGCATTTTGCAGTCGTGGAGATGGTTGCAAGTACAATGAATCTATGAGCTGAAGTAATGCTTTTAGCTCAAGATACAGTTTTCCAAGGTTAAGATAGTGACCCTATAGATCAATCCCTTTCTAGAAAAGCCAATGTAGCTTTGTGTTCAAATGCGTCCATACAGCTGATGCTTGATTGGTTGAATATGATCAATTGATGTCTGCTTCCTTCTGCCATTCTTGTCATAATAATTTAACTGTGCCGATCGAGCAATGCATTTGAGAGTGATGATTTTGTTGAAAAACATTTAATGGTCCATTGGGATAGAATGCAAATGTTGATCTTAAGTTCGAATTAAATGTCTGTTATTGCATTCAAGGGACAGCTTGCTATTTTTCTCTTAAAATCCTAGTGCCAAATGACATATTGAATAATTGTTTATGAGCTATAGCTGGTGAACATGTTGAAACAATTCTCATGGAGATAATCCCATGCCTAGAGAAGAAATAGGACAGTAAATTCTGTAACTGTAGTATATAATCTGGCCATTTCTACACAAAAGAAACCACCATCTAGTTGGAACTTGACTTTGGAAATGGCTTTTTTCACATGAACAATGAGGGAATTTTTACTTGATTTCTTCTGTTCTTGCAATTAACTGTTCTTTCATACTTTTCTGTGCATAGGTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATG</genome_strand>
        <mrna_strand>GAGGTCACTCTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551508" ref_strand="+" ref_description="SGN-E551508 [TUS-50-H15]">
      <seq>agactgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82352" stop="85149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82652" g_stop="82762" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="278" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="425" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="84027" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="558" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84759" g_stop="84849" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="649" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E551508" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82652" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="84027"/>
          <exon e_start="84759" e_stop="84849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGA</genome_strand>
        <mrna_strand>AGACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200458" ref_strand="+" ref_description="SGN-E200458 [cLEB-8-J5]">
      <seq>gcacgagttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82359" stop="83297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82652" g_stop="82762" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="278" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83153" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="295" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E200458" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82652" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAG</genome_strand>
        <mrna_strand>GCACGAGTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688436" ref_strand="+" ref_description="SGN-E688436 [t3_tus_50_h15]">
      <seq>actgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82354" stop="85150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82654" g_stop="82762" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="276" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="423" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="84027" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="556" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="84759" g_stop="84850" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="648" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E688436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82654" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="84027"/>
          <exon e_start="84759" e_stop="84850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGAT</genome_strand>
        <mrna_strand>ACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206866" ref_strand="+" ref_description="SGN-E206866 [cLEC-33-O10]">
      <seq>ctgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtatcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgatagtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82355" stop="84242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82655" g_stop="82762" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="82994" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="275" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="422" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="83942" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="470" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E206866" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82655" e_stop="82762"/>
          <exon e_start="82828" e_stop="82994"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="83942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGC</genome_strand>
        <mrna_strand>CTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG..............................................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252399" ref_strand="+" ref_description="SGN-E252399 [cLEG-12-D19]">
      <seq>tgcttcagcttccccatctatcgtcctccgtccctaaagaccaaaggttgtgtcgcaatgcaagtgcactcgatcccttttcgcgtcacaaggcttcatggcaagagcttgccggcgttctggtattctcagcgattcctttcaccgctgtcaaagctatcgccaacagtaccttcggtgaaacactccgtaaacgattagaagagagaaagaaggttgcagtagagaattcagctaagttcaaagcacttgcactaatggcaagaaacgataggtaaatccctatctcttgtatctggtatggagaagatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82356" stop="84236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82656" g_stop="82762" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82828" g_stop="83012" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="292" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83013" i_stop="83136" i_length="124">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="83137" g_stop="83283" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="439" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83895" g_stop="83936" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="481" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E252399" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82656" e_stop="82762"/>
          <exon e_start="82828" e_stop="83012"/>
          <exon e_start="83137" e_stop="83283"/>
          <exon e_start="83895" e_stop="83936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAGGTGTGTTTTTGCTTCTTCTGATTGCCATCAAATACCACTTAACTTAACTAATCAATTCTATTCAGCTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTGGTAAGCCATTCTCCTCTGTAATGCATCCATCTATTTTCCACCACTGTGAAAATGTTCCTATATTATACTGTTATGCATACCCACTTTTGTTTTCACTATTATCATTTGTTTGTCTTCTTTGCAGTATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCT</genome_strand>
        <mrna_strand>TGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTGTCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG.................................................................CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTG............................................................................................................................TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697535" ref_strand="+" ref_description="SGN-E697535 [FA03BB01]">
      <seq>gatcgcccccgctggcttggtccaatttcttatgactatcctgcttatcttaatggggagctacccggggactatggatttgatatctgcgggttgagcaaggatcccgtggcccttcaaaactactttaattatgaaatattgcatggtcgttgggctatgctggctgctcttggtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgatggttggaccagaatatgcaaggtattgtggaattgaggctttggaaccgttaggaatttacttgcctggtgacatcaactatcctggaggtgttctttttgatccattgaatctctctaaagatccgatggcttttgaagagctaaaggttaaagaaataaaaaatgggcgccttgctatggttgcctggttaggcttttatgtccaagccgctcttacgggtaaaggccctgtgcaaaaccttctggagcatatctcagatccattccacaataacttgctctccattctaaagtctctgtaaaagaattcacttatccaaagttgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="82853" stop="91544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83153" g_stop="83283" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611">
            <donor d_prob="0.831" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83895" g_stop="84027" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="264" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84759" g_stop="84851" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="357" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90916" g_stop="91244" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="686" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E697535" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83153" e_stop="83283"/>
          <exon e_start="83895" e_stop="84027"/>
          <exon e_start="84759" e_stop="84851"/>
          <exon e_start="90916" e_stop="91244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAAGTATGGATTGGATTTTGCTTTTATTAACTCCTTCAAATGTTCTTTTGTTCTGAGTAGATAATGTATAGTATTTTCCCAAAAAATGCAACATCATATGCCATTAAATTATTTGTGACCTTTTATGCTTCTTCAGAACATGTATCCATTTAAAGACGAGCCTCTCACTAAAGAAATGAACAGAGCGAGGGCCTACGATAACCTACTGAGAAATAACCACGATCCTAAGGTGATTGGTCACAACTCACATGATTCCATCCTCTTTTAGTTGGAATAAAAGCAGACATGTTTCTTGAGCATAAATGTAGCCAAAAAAAGTTATAAATTGGTATTTGAGGGGAAGTAGCAAAGGGTTGCAAAATTCATATCTGGTCAGGGTTTAGGGCCACACATAGACATGAAAGTTGTTCTACTCCCAGACATTTTTGGAATGAGAGATTGAACATCTTCTAGCGTGGTTGTTCAGAGATCCCATTGTGTAATCTTTTGGGGAGCTTTTGAAATTCTCAAAATAGCAACAAACACACACTCATACAAACTATTTGTTCAGAAACCACGTAGAAGCTCTGTTAAATTCTATTCGAACTTATTTCAGTTGTCATGGTTACTCACAGTTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATGGTGAGTGTAAACACTTGCTCTATGTGTATCCTTCCAGTAATTATTTCTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACATGGTATTAGAGCAGGAACGTTCCTGATTTTCTTACCTCTTTTCTTCTTCAATCTGCGCATCAGATCCTCTGTAAACTCGATTTTTGTTTTTCAAAATACAATGACAAATTCTGCATCTACGAGCACTGCATTAGACAGTGTTCCTTCATCTGGGATTGATGCAGGGAGTCACTTTTACATTCATCCCTCAGACAATCCTGGAGCAGTACTTGTACCAGTTCCTTTCAATGGCACTGGTTTTCATTCATGGCGTCGTAGTGTACTTCGTTCCTTGTCAGTGAAGAACAAGCTAGTGTTCATCAATGGTGAGTGTAAGAGACCAGAGGTGAATGGGTGAGATGTGATGATATGGTCACTTCATGGATTCTCAACTCTCTAGATCGAGACATTACTGATAGTGTTGAATATGTTAATGATGCTTTGGAATTATGGACAGAACTGGAGGATCGATATGATCAGACGAATGGAGCAAAATTGTATCAAACTCAGAAGGAGATAAATGACCTTAATCAAGGTATTCTCGATATCACAACATATTACACTCGTATGAAGAAACTTTGGGAGGAGTTAAACAGTCTGTGTGTTTCAAGTCAGTGTAGTTGTGTGTGTGTATGTGGAGCTAAAGCTAATGTTCAGAAGGCAGAGCAAGACAGACGTTTGATTCAATTTCTGATGGGCTTGAATGTGGTATATACTACAATTAGGGGAAGTATCTTGATGATGAATCCCTTGCCATCCTTGGCACAAGCTTTTGCCTTACTAGTGCAGGAGGAAAAACAACGAGAATTTAAACCAAATAATCAACTGTTTACTGAGAGTAGTTCTCTAGCTGCAGTTTCATCAAGTTCAGGAGGTAGAAGTTTTCAAACAAACTATTCTACCTCCAACACAACACCAAGAGGAAGACCTTTCTGTGACTATTGTAGAAGACCAGGACATGTTAGAGCAAAGTGTTACAAGTTGCATGGCTATCCATCTAATGACACAAATGGCTCTGCTCGTGATCAGCATAATCCAAGGAACACAGTTCAAAACACATATCCAAATCCAAGGCATAACAATAAAGGAAGAGGTACATCAGCAAACTCTGTAAGACTATCCTGTGATGGAGATACTAGTGGACAAACAAAGGAATCAAGTTCAACATCTTGTAATGACCCTCAAGGAAATGAGAACATCAGTATCACCAAGGAGCAATATGATCAAGTTTCTCACTTGCTGAATCAGTTTCAAAATGATGGAGTGTGTGGATCTGTGAACTTTGCAGGTGGTTTTGCTTGCTCTTTTTCTCTTGATTATATCAAACTTTCATGTGAATGTTTCAAAACAAGGACTGACCTATGGATTCTGGACTCAGGAGCCTCTCATCACATGACTTTTAACAAAAATAACCTTGTAAATCCAGTAAATCTACCTTATCCTATGTTAGTCAAATTACCAAATGGATATAGAGTCAAAATCACAGTGGTTGGTAGTGTACATCTTACACCTAAAATCATCTTGTCAGGAGTATTGTATGCCCCCTCATTCAAATACAATTTAATCTCCATCAACTCTCTTGTAAACCATCTTCAATGCACTGTCTCTTTTTCTAACACTTCTTGTCTGTTGCAGGCCCCTTCACTGAAGAGGCCTCTGGAAATTGGTAAGATGCATGATGGCCTTTATTTCCTCTGCTCAGATTGCTTACAAAAGAATTCACATGCTCAACATTATTCCTCTTCCCTTTACTCTTTATCCAGTAATAAAGTACAATGTACATCTCTTTCTTGTAACTCTCATTCAGATGAAATAAACTCTTCTCTTGTTGGTAATAAAGACAATGTTGCTAACAACTCTTTTATTTCTAGTTCCTTTCCTAATGATAGTGTGGATCTGTTGTGGCATTATAGACTTGGTCATGTACCCTTTGTGAAGATGAAAAATATATCTTCCATACCAGCAAAATTCTCATCATGACAACCTTTCTTCTGTCCTATATGTCCCATGGCAAGACAATCCAGATTACCCTTTCCACCAAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTACTCCAAAAGTTCACAGAACTAAGTTTGATCCCAAAACCATACCACATGTGTTTGTTGGATATCCTTATGCTACAAAGGGTTACAAAGTCTTGAACCTATCCACTCAGAAAATCCATGTCTCAAGGGATGTTATTTTCCATGAAACTATATTTCCTTTTGCCATGTCTAAAGACCCTACTCACTTCCCAAAATTTCCTTTCCATTGTGTGTCCCTTCATGATTATCCAACATCATATGATGATCAAGATTACTCCAGTAAAGAAACAACCACATCACCTACTCATATCACACCTGAAAATTCCACTTCACCTACTCATATCACACCTGAAAATTCCACATCCATACCACAGCTTAGAAGATCCCAAAGGCTACATAAGACTCCTACATACTTGACTGACTATGTTCACAATGTACCATCCTCAACTGTTTCAAATTCACAACCACCACAACCACATTCTTTACCCTTGAATGCCCTTTTCACTCTTAAACATTATGTGTCTCCTGATGTCTTTAGTTTTGATAGTCAGTCCTTTATAATGAATATTTCTCATGACTGTGAACCTAATTCATATGAGGAAGCATCTATGGATCCTGCATGGCAAAAGGCAATGACACAAGAGTTCCTTGCCCTGCATGACAACAATACTTGGACTCTCACAAACCTGCCAAAGGATAAGAAGTCTGTTGGTTGTAGGTGGGTTTACAAGGTTAAACACAAGGCTGATGGAAGTGTAGAAAGGTATAAAGCAAGACTTGTAGTAAAGGGATATACTCAACATCATGGCATAGACTATACAGAAACCTTCTCACCTGTGGTCAAGATGACCACTGTGAGAACACTTATTGTTGCTGCTGCAAAGAAACAGTGGAACATACATCAGCTTGATGTGAACAATGCCTTCCTACATGGAGATTTACATGAAGAAGTGTATATGGACATTCCACCAGGTTTGGCCACTCCTCACAAGGATTTAGTTTGCAAATTAAACAAGTCATTGTATGGTTTAAAGCAGGCTAGTAGGCAGTGGTATGAAAAGCTGACTGAGGCACTACACACAAGAGGATATGAACATTCTCCTCATGACTATTCACTGTTTTACAAGAAAAGAGGTGCATCTAATGTCTTTCTAGGTGTTTATGTGGATGATATCTTACTGACAGGAACAGACACTAATGAAATTGATGAGCTAAAAAGGTTCCTTGACAATCAGTTTAAGATCAAAGATCTTGGCAGACTACATTATTTTCTAGGCTTAGAAGTCTTGTACAAAGATGATGGGATTCTGGTTTCTCAGAGAAAGTTTGTGTTGGATCTTCTCAAGGAGTTCAATTGTGATCACATGGCTCCTTTGTCTTCTCCACTAGATCCAAATATCAAGCTAAGATCCCATGAAGGGAAAGTTCTGGATGACCCTACTTATTACAGAAAACTAATTGGCAAGTTGAATTTCCTCACACATACTAGGCTTGATCTCGCTTATGGTGTACAACTTCTCAGTCAGTACATGCAAGATCCTAGAGAGCCTCATCTACATGCTGCTTTTCATATGTTAAGATACCTCAAGAAAGATCCTACTCTAGGTGTTTTCATGTCATCTGCTGCAAACTTTGATGTACAAGCATATTGCGATTCTGATTGGGCTGCTTGTCCTGATTCAAGGAAATCTGTTAGTGGTTACATTGTATTGTTAGGCGACAGTCCTATTAGCTGGAAGTCCAAGAAACAAGAAACAATTTCACTCTCTTCAGCTGAAGCAGAGTACAGATCATTGAGAAAAGTAGTAGGTGAATTAACCTGGTTGCAAAGGTTGTTTGAAGAGCTGAATATATATCAGACTGCACCATTTCCTGTGTTTTGTGATAGCCAAGCAGCCATACATATTGCTAAAAATCCTGTTTTTCATGAACGTACGAAACATATAGAAGTGGATTGTCATTTTGTGAGATCAAAACTCCAAGAAGGGCTCATTTCATTACATCATGTTGATACTACTAATCAGTTGGCAGATGTTCTTACAAAAGCACTTACTGGGATTAAGCATTCTACAATTCTAGACAAATTGGTTTCGATCACCTCTGCTCCAATTTGAGGGGGGGTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACAATTTCAATGCCGTTCTTCATAAAAAAAAAAGAATTATTTCAATTGCCGAATGTGTTGAATGTGAATCACTTTCTGGTTATTTGAATTCTTCTTGTAAACGGTGCATTTTATCTCTTGCAATACACTCATTGTGGGACAAGGTAGGCATTTTGCAGTCGTGGAGATGGTTGCAAGTACAATGAATCTATGAGCTGAAGTAATGCTTTTAGCTCAAGATACAGTTTTCCAAGGTTAAGATAGTGACCCTATAGATCAATCCCTTTCTAGAAAAGCCAATGTAGCTTTGTGTTCAAATGCGTCCATACAGCTGATGCTTGATTGGTTGAATATGATCAATTGATGTCTGCTTCCTTCTGCCATTCTTGTCATAATAATTTAACTGTGCCGATCGAGCAATGCATTTGAGAGTGATGATTTTGTTGAAAAACATTTAATGGTCCATTGGGATAGAATGCAAATGTTGATCTTAAGTTCGAATTAAATGTCTGTTATTGCATTCAAGGGACAGCTTGCTATTTTTCTCTTAAAATCCTAGTGCCAAATGACATATTGAATAATTGTTTATGAGCTATAGCTGGTGAACATGTTGAAACAATTCTCATGGAGATAATCCCATGCCTAGAGAAGAAATAGGACAGTAAATTCTGTAACTGTAGTATATAATCTGGCCATTTCTACACAAAAGAAACCACCATCTAGTTGGAACTTGACTTTGGAAATGGCTTTTTTCACATGAACAATGAGGGAATTTTTACTTGATTTCTTCTGTTCTTGCAATTAACTGTTCTTTCATACTTTTCTGTGCATAGGTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACA</genome_strand>
        <mrna_strand>GATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAAAGAATTCACTTATCCAAAGTTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537884" ref_strand="+" ref_description="SGN-E537884 [TUS-56-L11]">
      <seq>gtgctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgatggttggaccagaatatgcaaggtattgtggaattgaggctttggaaccgttaggaatttacttgcctggtgacatcaactatcctggaggtgttctttttgatccattgaatctctctaaagatccgatggcttttgaagagctaaaggttaaagaaataaaaaatgggcgccttgctatggttgcctggttaggcttttatgtccaagccgctcttacgggtaaaggccctgtgcaaaaccttctggagcatatctcagatccattccacaataacttgctctccattctaaagtctctgtaagagaattcacttatccaaagttgacaatggggtttaagcctcccaggtataattgttctgtcttctttatatttaaggctgtaatatgtgaactcataattcatctgaaaatagtgtcatacctagaaaaggtgaagacatgntgtgcccagaagagtatttgaggttgtccataccaatgaaccttatatggtcttgtttataatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="83639" stop="91726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83939" g_stop="84027" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84759" g_stop="84851" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="182" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90916" g_stop="91426" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="693" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E537884" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83939" e_stop="84027"/>
          <exon e_start="84759" e_stop="84851"/>
          <exon e_start="90916" e_stop="91426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATGGTGAGTGTAAACACTTGCTCTATGTGTATCCTTCCAGTAATTATTTCTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACATGGTATTAGAGCAGGAACGTTCCTGATTTTCTTACCTCTTTTCTTCTTCAATCTGCGCATCAGATCCTCTGTAAACTCGATTTTTGTTTTTCAAAATACAATGACAAATTCTGCATCTACGAGCACTGCATTAGACAGTGTTCCTTCATCTGGGATTGATGCAGGGAGTCACTTTTACATTCATCCCTCAGACAATCCTGGAGCAGTACTTGTACCAGTTCCTTTCAATGGCACTGGTTTTCATTCATGGCGTCGTAGTGTACTTCGTTCCTTGTCAGTGAAGAACAAGCTAGTGTTCATCAATGGTGAGTGTAAGAGACCAGAGGTGAATGGGTGAGATGTGATGATATGGTCACTTCATGGATTCTCAACTCTCTAGATCGAGACATTACTGATAGTGTTGAATATGTTAATGATGCTTTGGAATTATGGACAGAACTGGAGGATCGATATGATCAGACGAATGGAGCAAAATTGTATCAAACTCAGAAGGAGATAAATGACCTTAATCAAGGTATTCTCGATATCACAACATATTACACTCGTATGAAGAAACTTTGGGAGGAGTTAAACAGTCTGTGTGTTTCAAGTCAGTGTAGTTGTGTGTGTGTATGTGGAGCTAAAGCTAATGTTCAGAAGGCAGAGCAAGACAGACGTTTGATTCAATTTCTGATGGGCTTGAATGTGGTATATACTACAATTAGGGGAAGTATCTTGATGATGAATCCCTTGCCATCCTTGGCACAAGCTTTTGCCTTACTAGTGCAGGAGGAAAAACAACGAGAATTTAAACCAAATAATCAACTGTTTACTGAGAGTAGTTCTCTAGCTGCAGTTTCATCAAGTTCAGGAGGTAGAAGTTTTCAAACAAACTATTCTACCTCCAACACAACACCAAGAGGAAGACCTTTCTGTGACTATTGTAGAAGACCAGGACATGTTAGAGCAAAGTGTTACAAGTTGCATGGCTATCCATCTAATGACACAAATGGCTCTGCTCGTGATCAGCATAATCCAAGGAACACAGTTCAAAACACATATCCAAATCCAAGGCATAACAATAAAGGAAGAGGTACATCAGCAAACTCTGTAAGACTATCCTGTGATGGAGATACTAGTGGACAAACAAAGGAATCAAGTTCAACATCTTGTAATGACCCTCAAGGAAATGAGAACATCAGTATCACCAAGGAGCAATATGATCAAGTTTCTCACTTGCTGAATCAGTTTCAAAATGATGGAGTGTGTGGATCTGTGAACTTTGCAGGTGGTTTTGCTTGCTCTTTTTCTCTTGATTATATCAAACTTTCATGTGAATGTTTCAAAACAAGGACTGACCTATGGATTCTGGACTCAGGAGCCTCTCATCACATGACTTTTAACAAAAATAACCTTGTAAATCCAGTAAATCTACCTTATCCTATGTTAGTCAAATTACCAAATGGATATAGAGTCAAAATCACAGTGGTTGGTAGTGTACATCTTACACCTAAAATCATCTTGTCAGGAGTATTGTATGCCCCCTCATTCAAATACAATTTAATCTCCATCAACTCTCTTGTAAACCATCTTCAATGCACTGTCTCTTTTTCTAACACTTCTTGTCTGTTGCAGGCCCCTTCACTGAAGAGGCCTCTGGAAATTGGTAAGATGCATGATGGCCTTTATTTCCTCTGCTCAGATTGCTTACAAAAGAATTCACATGCTCAACATTATTCCTCTTCCCTTTACTCTTTATCCAGTAATAAAGTACAATGTACATCTCTTTCTTGTAACTCTCATTCAGATGAAATAAACTCTTCTCTTGTTGGTAATAAAGACAATGTTGCTAACAACTCTTTTATTTCTAGTTCCTTTCCTAATGATAGTGTGGATCTGTTGTGGCATTATAGACTTGGTCATGTACCCTTTGTGAAGATGAAAAATATATCTTCCATACCAGCAAAATTCTCATCATGACAACCTTTCTTCTGTCCTATATGTCCCATGGCAAGACAATCCAGATTACCCTTTCCACCAAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTACTCCAAAAGTTCACAGAACTAAGTTTGATCCCAAAACCATACCACATGTGTTTGTTGGATATCCTTATGCTACAAAGGGTTACAAAGTCTTGAACCTATCCACTCAGAAAATCCATGTCTCAAGGGATGTTATTTTCCATGAAACTATATTTCCTTTTGCCATGTCTAAAGACCCTACTCACTTCCCAAAATTTCCTTTCCATTGTGTGTCCCTTCATGATTATCCAACATCATATGATGATCAAGATTACTCCAGTAAAGAAACAACCACATCACCTACTCATATCACACCTGAAAATTCCACTTCACCTACTCATATCACACCTGAAAATTCCACATCCATACCACAGCTTAGAAGATCCCAAAGGCTACATAAGACTCCTACATACTTGACTGACTATGTTCACAATGTACCATCCTCAACTGTTTCAAATTCACAACCACCACAACCACATTCTTTACCCTTGAATGCCCTTTTCACTCTTAAACATTATGTGTCTCCTGATGTCTTTAGTTTTGATAGTCAGTCCTTTATAATGAATATTTCTCATGACTGTGAACCTAATTCATATGAGGAAGCATCTATGGATCCTGCATGGCAAAAGGCAATGACACAAGAGTTCCTTGCCCTGCATGACAACAATACTTGGACTCTCACAAACCTGCCAAAGGATAAGAAGTCTGTTGGTTGTAGGTGGGTTTACAAGGTTAAACACAAGGCTGATGGAAGTGTAGAAAGGTATAAAGCAAGACTTGTAGTAAAGGGATATACTCAACATCATGGCATAGACTATACAGAAACCTTCTCACCTGTGGTCAAGATGACCACTGTGAGAACACTTATTGTTGCTGCTGCAAAGAAACAGTGGAACATACATCAGCTTGATGTGAACAATGCCTTCCTACATGGAGATTTACATGAAGAAGTGTATATGGACATTCCACCAGGTTTGGCCACTCCTCACAAGGATTTAGTTTGCAAATTAAACAAGTCATTGTATGGTTTAAAGCAGGCTAGTAGGCAGTGGTATGAAAAGCTGACTGAGGCACTACACACAAGAGGATATGAACATTCTCCTCATGACTATTCACTGTTTTACAAGAAAAGAGGTGCATCTAATGTCTTTCTAGGTGTTTATGTGGATGATATCTTACTGACAGGAACAGACACTAATGAAATTGATGAGCTAAAAAGGTTCCTTGACAATCAGTTTAAGATCAAAGATCTTGGCAGACTACATTATTTTCTAGGCTTAGAAGTCTTGTACAAAGATGATGGGATTCTGGTTTCTCAGAGAAAGTTTGTGTTGGATCTTCTCAAGGAGTTCAATTGTGATCACATGGCTCCTTTGTCTTCTCCACTAGATCCAAATATCAAGCTAAGATCCCATGAAGGGAAAGTTCTGGATGACCCTACTTATTACAGAAAACTAATTGGCAAGTTGAATTTCCTCACACATACTAGGCTTGATCTCGCTTATGGTGTACAACTTCTCAGTCAGTACATGCAAGATCCTAGAGAGCCTCATCTACATGCTGCTTTTCATATGTTAAGATACCTCAAGAAAGATCCTACTCTAGGTGTTTTCATGTCATCTGCTGCAAACTTTGATGTACAAGCATATTGCGATTCTGATTGGGCTGCTTGTCCTGATTCAAGGAAATCTGTTAGTGGTTACATTGTATTGTTAGGCGACAGTCCTATTAGCTGGAAGTCCAAGAAACAAGAAACAATTTCACTCTCTTCAGCTGAAGCAGAGTACAGATCATTGAGAAAAGTAGTAGGTGAATTAACCTGGTTGCAAAGGTTGTTTGAAGAGCTGAATATATATCAGACTGCACCATTTCCTGTGTTTTGTGATAGCCAAGCAGCCATACATATTGCTAAAAATCCTGTTTTTCATGAACGTACGAAACATATAGAAGTGGATTGTCATTTTGTGAGATCAAAACTCCAAGAAGGGCTCATTTCATTACATCATGTTGATACTACTAATCAGTTGGCAGATGTTCTTACAAAAGCACTTACTGGGATTAAGCATTCTACAATTCTAGACAAATTGGTTTCGATCACCTCTGCTCCAATTTGAGGGGGGGTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACAATTTCAATGCCGTTCTTCATAAAAAAAAAAGAATTATTTCAATTGCCGAATGTGTTGAATGTGAATCACTTTCTGGTTATTTGAATTCTTCTTGTAAACGGTGCATTTTATCTCTTGCAATACACTCATTGTGGGACAAGGTAGGCATTTTGCAGTCGTGGAGATGGTTGCAAGTACAATGAATCTATGAGCTGAAGTAATGCTTTTAGCTCAAGATACAGTTTTCCAAGGTTAAGATAGTGACCCTATAGATCAATCCCTTTCTAGAAAAGCCAATGTAGCTTTGTGTTCAAATGCGTCCATACAGCTGATGCTTGATTGGTTGAATATGATCAATTGATGTCTGCTTCCTTCTGCCATTCTTGTCATAATAATTTAACTGTGCCGATCGAGCAATGCATTTGAGAGTGATGATTTTGTTGAAAAACATTTAATGGTCCATTGGGATAGAATGCAAATGTTGATCTTAAGTTCGAATTAAATGTCTGTTATTGCATTCAAGGGACAGCTTGCTATTTTTCTCTTAAAATCCTAGTGCCAAATGACATATTGAATAATTGTTTATGAGCTATAGCTGGTGAACATGTTGAAACAATTCTCATGGAGATAATCCCATGCCTAGAGAAGAAATAGGACAGTAAATTCTGTAACTGTAGTATATAATCTGGCCATTTCTACACAAAAGAAACCACCATCTAGTTGGAACTTGACTTTGGAAATGGCTTTTTTCACATGAACAATGAGGGAATTTTTACTTGATTTCTTCTGTTCTTGCAATTAACTGTTCTTTCATACTTTTCTGTGCATAGGTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGG</genome_strand>
        <mrna_strand>GTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGNTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265328" ref_strand="+" ref_description="SGN-E265328 [cLEI-9-J23]">
      <seq>gctttgattccagaacttttaaacctgacaggacttttccagtttgtggaacctgtttggtggcgagtgggctactcaaagcttaagggagatacacttgactatttagggatccctggactccatttagctggaagtcaaggagtcattgtcatagccatttgccaagcccttttgatggttggaccagaatatgcaaggtattgtggaattgaggctttggaaccgttaggaatttacttgcctggtgacatcaactatcctggaggtgttctttttgatccattgaatctctctaaagatccgatggcttttgaagagctaaaggttaaagaaataaaaaatgggcgccttgctatggttgcctggttaggcttttatgttcaagccgctcttacgggtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="83641" stop="91440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83941" g_stop="84027" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84759" g_stop="84851" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="180" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90916" g_stop="91140" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="405" r_length="225" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E265328" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83941" e_stop="84027"/>
          <exon e_start="84759" e_stop="84851"/>
          <exon e_start="90916" e_stop="91140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAGGTTGGTATCTTTCATATATGCGTTGTAACTTGACTTCCCTTGGTTGATAGATGCTGCTTCCCTTAGCTATTGATAATACGAGTCCAAAAACTCCCATGCTTGTTCTTTCCTCCAATCTCGCCTCTCCAGTTATCGACTCAGCGGAACCTTGTCTGTCGACCCAAACAACTCATGTCGAATGTGCAAGTAGGTGAGATCGGATGAGTTGATAATGCTACAAGGAAGATAAATAACTATAGTAACATACTCCAAAGTAACTTAATATCTTCCAACTATTTGTACAAAATGGATTTGTTTTATGATGAGCCAAACATCCACTAGAATTCTATTTCTTGGCAAAGTTATTATTCAACACTGCTGTGTTCTGTGTAATTCCTACCCTCCCAAGACCCCACTTGTGGGATTACACTGGGTTTGTTGTTGTTGCTTCCTTGTTCTCAGGTTTTCGAGTAAACATAATTTGGATTGATTTTACAAAAATTGTCGTTCAAAATTTCAATTTTTAAATTCTGATATAATTTTCTTATGAAATTTCATTCTTGGAATCTAGTGTTTAACATGCTATTCCTTTCAATAATTAATTTGTATCACTATCACCCACCTATTTCATATTCTTATCAGAGTGTTGTTCCACTTGATTATTGACCTCATATTGACCTTATAAATTCAGTATCCAGCGCTTATTGCAGGTATCCTTTTTTAATCTTATATATTTCTTTCATTTTTTCAAGGGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATGGTGAGTGTAAACACTTGCTCTATGTGTATCCTTCCAGTAATTATTTCTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACATGGTATTAGAGCAGGAACGTTCCTGATTTTCTTACCTCTTTTCTTCTTCAATCTGCGCATCAGATCCTCTGTAAACTCGATTTTTGTTTTTCAAAATACAATGACAAATTCTGCATCTACGAGCACTGCATTAGACAGTGTTCCTTCATCTGGGATTGATGCAGGGAGTCACTTTTACATTCATCCCTCAGACAATCCTGGAGCAGTACTTGTACCAGTTCCTTTCAATGGCACTGGTTTTCATTCATGGCGTCGTAGTGTACTTCGTTCCTTGTCAGTGAAGAACAAGCTAGTGTTCATCAATGGTGAGTGTAAGAGACCAGAGGTGAATGGGTGAGATGTGATGATATGGTCACTTCATGGATTCTCAACTCTCTAGATCGAGACATTACTGATAGTGTTGAATATGTTAATGATGCTTTGGAATTATGGACAGAACTGGAGGATCGATATGATCAGACGAATGGAGCAAAATTGTATCAAACTCAGAAGGAGATAAATGACCTTAATCAAGGTATTCTCGATATCACAACATATTACACTCGTATGAAGAAACTTTGGGAGGAGTTAAACAGTCTGTGTGTTTCAAGTCAGTGTAGTTGTGTGTGTGTATGTGGAGCTAAAGCTAATGTTCAGAAGGCAGAGCAAGACAGACGTTTGATTCAATTTCTGATGGGCTTGAATGTGGTATATACTACAATTAGGGGAAGTATCTTGATGATGAATCCCTTGCCATCCTTGGCACAAGCTTTTGCCTTACTAGTGCAGGAGGAAAAACAACGAGAATTTAAACCAAATAATCAACTGTTTACTGAGAGTAGTTCTCTAGCTGCAGTTTCATCAAGTTCAGGAGGTAGAAGTTTTCAAACAAACTATTCTACCTCCAACACAACACCAAGAGGAAGACCTTTCTGTGACTATTGTAGAAGACCAGGACATGTTAGAGCAAAGTGTTACAAGTTGCATGGCTATCCATCTAATGACACAAATGGCTCTGCTCGTGATCAGCATAATCCAAGGAACACAGTTCAAAACACATATCCAAATCCAAGGCATAACAATAAAGGAAGAGGTACATCAGCAAACTCTGTAAGACTATCCTGTGATGGAGATACTAGTGGACAAACAAAGGAATCAAGTTCAACATCTTGTAATGACCCTCAAGGAAATGAGAACATCAGTATCACCAAGGAGCAATATGATCAAGTTTCTCACTTGCTGAATCAGTTTCAAAATGATGGAGTGTGTGGATCTGTGAACTTTGCAGGTGGTTTTGCTTGCTCTTTTTCTCTTGATTATATCAAACTTTCATGTGAATGTTTCAAAACAAGGACTGACCTATGGATTCTGGACTCAGGAGCCTCTCATCACATGACTTTTAACAAAAATAACCTTGTAAATCCAGTAAATCTACCTTATCCTATGTTAGTCAAATTACCAAATGGATATAGAGTCAAAATCACAGTGGTTGGTAGTGTACATCTTACACCTAAAATCATCTTGTCAGGAGTATTGTATGCCCCCTCATTCAAATACAATTTAATCTCCATCAACTCTCTTGTAAACCATCTTCAATGCACTGTCTCTTTTTCTAACACTTCTTGTCTGTTGCAGGCCCCTTCACTGAAGAGGCCTCTGGAAATTGGTAAGATGCATGATGGCCTTTATTTCCTCTGCTCAGATTGCTTACAAAAGAATTCACATGCTCAACATTATTCCTCTTCCCTTTACTCTTTATCCAGTAATAAAGTACAATGTACATCTCTTTCTTGTAACTCTCATTCAGATGAAATAAACTCTTCTCTTGTTGGTAATAAAGACAATGTTGCTAACAACTCTTTTATTTCTAGTTCCTTTCCTAATGATAGTGTGGATCTGTTGTGGCATTATAGACTTGGTCATGTACCCTTTGTGAAGATGAAAAATATATCTTCCATACCAGCAAAATTCTCATCATGACAACCTTTCTTCTGTCCTATATGTCCCATGGCAAGACAATCCAGATTACCCTTTCCACCAAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTACTCCAAAAGTTCACAGAACTAAGTTTGATCCCAAAACCATACCACATGTGTTTGTTGGATATCCTTATGCTACAAAGGGTTACAAAGTCTTGAACCTATCCACTCAGAAAATCCATGTCTCAAGGGATGTTATTTTCCATGAAACTATATTTCCTTTTGCCATGTCTAAAGACCCTACTCACTTCCCAAAATTTCCTTTCCATTGTGTGTCCCTTCATGATTATCCAACATCATATGATGATCAAGATTACTCCAGTAAAGAAACAACCACATCACCTACTCATATCACACCTGAAAATTCCACTTCACCTACTCATATCACACCTGAAAATTCCACATCCATACCACAGCTTAGAAGATCCCAAAGGCTACATAAGACTCCTACATACTTGACTGACTATGTTCACAATGTACCATCCTCAACTGTTTCAAATTCACAACCACCACAACCACATTCTTTACCCTTGAATGCCCTTTTCACTCTTAAACATTATGTGTCTCCTGATGTCTTTAGTTTTGATAGTCAGTCCTTTATAATGAATATTTCTCATGACTGTGAACCTAATTCATATGAGGAAGCATCTATGGATCCTGCATGGCAAAAGGCAATGACACAAGAGTTCCTTGCCCTGCATGACAACAATACTTGGACTCTCACAAACCTGCCAAAGGATAAGAAGTCTGTTGGTTGTAGGTGGGTTTACAAGGTTAAACACAAGGCTGATGGAAGTGTAGAAAGGTATAAAGCAAGACTTGTAGTAAAGGGATATACTCAACATCATGGCATAGACTATACAGAAACCTTCTCACCTGTGGTCAAGATGACCACTGTGAGAACACTTATTGTTGCTGCTGCAAAGAAACAGTGGAACATACATCAGCTTGATGTGAACAATGCCTTCCTACATGGAGATTTACATGAAGAAGTGTATATGGACATTCCACCAGGTTTGGCCACTCCTCACAAGGATTTAGTTTGCAAATTAAACAAGTCATTGTATGGTTTAAAGCAGGCTAGTAGGCAGTGGTATGAAAAGCTGACTGAGGCACTACACACAAGAGGATATGAACATTCTCCTCATGACTATTCACTGTTTTACAAGAAAAGAGGTGCATCTAATGTCTTTCTAGGTGTTTATGTGGATGATATCTTACTGACAGGAACAGACACTAATGAAATTGATGAGCTAAAAAGGTTCCTTGACAATCAGTTTAAGATCAAAGATCTTGGCAGACTACATTATTTTCTAGGCTTAGAAGTCTTGTACAAAGATGATGGGATTCTGGTTTCTCAGAGAAAGTTTGTGTTGGATCTTCTCAAGGAGTTCAATTGTGATCACATGGCTCCTTTGTCTTCTCCACTAGATCCAAATATCAAGCTAAGATCCCATGAAGGGAAAGTTCTGGATGACCCTACTTATTACAGAAAACTAATTGGCAAGTTGAATTTCCTCACACATACTAGGCTTGATCTCGCTTATGGTGTACAACTTCTCAGTCAGTACATGCAAGATCCTAGAGAGCCTCATCTACATGCTGCTTTTCATATGTTAAGATACCTCAAGAAAGATCCTACTCTAGGTGTTTTCATGTCATCTGCTGCAAACTTTGATGTACAAGCATATTGCGATTCTGATTGGGCTGCTTGTCCTGATTCAAGGAAATCTGTTAGTGGTTACATTGTATTGTTAGGCGACAGTCCTATTAGCTGGAAGTCCAAGAAACAAGAAACAATTTCACTCTCTTCAGCTGAAGCAGAGTACAGATCATTGAGAAAAGTAGTAGGTGAATTAACCTGGTTGCAAAGGTTGTTTGAAGAGCTGAATATATATCAGACTGCACCATTTCCTGTGTTTTGTGATAGCCAAGCAGCCATACATATTGCTAAAAATCCTGTTTTTCATGAACGTACGAAACATATAGAAGTGGATTGTCATTTTGTGAGATCAAAACTCCAAGAAGGGCTCATTTCATTACATCATGTTGATACTACTAATCAGTTGGCAGATGTTCTTACAAAAGCACTTACTGGGATTAAGCATTCTACAATTCTAGACAAATTGGTTTCGATCACCTCTGCTCCAATTTGAGGGGGGGTATTGAGGTTAAATTAGTCATTACACATAGCTGTTAATGTAATTAATTAGTTGTTAATTCAATTAGTTAGTTTAGCTTTTCAGGAAGTTAGTTATAGTTTTCTGTTTTGGTTAGCTTCTGTTTTTGGTGGTTATATAACCACAGCCTGCTCACATTTTCTGTTACACAACTGAATGAAAATTGTTCACACATTTTCAATGCCTCTTCTTCTTCCTCTTTAATCAAGCTTTCATCCATGGAGGTTTTGCAGCTCTCTTCAATTTGACAATTTCAATGCCGTTCTTCATAAAAAAAAAAGAATTATTTCAATTGCCGAATGTGTTGAATGTGAATCACTTTCTGGTTATTTGAATTCTTCTTGTAAACGGTGCATTTTATCTCTTGCAATACACTCATTGTGGGACAAGGTAGGCATTTTGCAGTCGTGGAGATGGTTGCAAGTACAATGAATCTATGAGCTGAAGTAATGCTTTTAGCTCAAGATACAGTTTTCCAAGGTTAAGATAGTGACCCTATAGATCAATCCCTTTCTAGAAAAGCCAATGTAGCTTTGTGTTCAAATGCGTCCATACAGCTGATGCTTGATTGGTTGAATATGATCAATTGATGTCTGCTTCCTTCTGCCATTCTTGTCATAATAATTTAACTGTGCCGATCGAGCAATGCATTTGAGAGTGATGATTTTGTTGAAAAACATTTAATGGTCCATTGGGATAGAATGCAAATGTTGATCTTAAGTTCGAATTAAATGTCTGTTATTGCATTCAAGGGACAGCTTGCTATTTTTCTCTTAAAATCCTAGTGCCAAATGACATATTGAATAATTGTTTATGAGCTATAGCTGGTGAACATGTTGAAACAATTCTCATGGAGATAATCCCATGCCTAGAGAAGAAATAGGACAGTAAATTCTGTAACTGTAGTATATAATCTGGCCATTTCTACACAAAAGAAACCACCATCTAGTTGGAACTTGACTTTGGAAATGGCTTTTTTCACATGAACAATGAGGGAATTTTTACTTGATTTCTTCTGTTCTTGCAATTAACTGTTCTTTCATACTTTTCTGTGCATAGGTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAA</genome_strand>
        <mrna_strand>GCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTTCAAGCCGCTCTTACGGGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331029" ref_strand="+" ref_description="SGN-E331029 [cTOD-6-I3]">
      <seq>aaaaacacacaccactactggcatttttgaactattacatgttgacatctggggtccatatcaaacaacaactcatgataacttcaagtatttcattaccttagtagatgactttagtaaatctacctggacacaacttctaagctgtaaaagcaatgctttccatgtccttaaagcctttatactcatggttgagaaccagttcagcaccactgttaaaaccatcagatcagataatggtttggaattcactagcaatgaaaccactctattttttcaatccaaagggatcatccatcagaaatcctgcccctatactcctcaacaaaatggtgtggtcgaaagaaagcacaaatttattcttgaaacagcaagggctctactttttcagtctaaactcccagtgaaatattggagtgaatgtaacttgcttccacatatcttataaatagactaccttcttttcctctccacaataaaactccatatgaaattttatataaacacaaacctatctactctcacctaaagagttttggatgtttatgttatcctactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="86884" stop="88043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87184" g_stop="87743" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E331029" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87184" e_stop="87743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</genome_strand>
        <mrna_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221376" ref_strand="+" ref_description="SGN-E221376 [cLEL-22-J20](-)">
      <seq>aaggttaaaaaataaaaaaatgggcgccttgctatgattgcctggttaggcttttatgtccaaaccgctcttacgggtaaaggccctgtgcaaaaccttctggagcatatctcagatccattccacaataacttgctctccattctaaagtctctgtaagagaattcacttatccaaagttgacaatggggtttaagcctcccaggtataattgttctgtcttctttatatttaaggctgtaatatgtgaactcataattcatctgaaaatagtgtcatacctagaaaaggtgaagacatgttgtgcccagaagagtatttgaggttgtccataccaatgaaccttatatggtcttgtttataatgggatgttaaatgactattgttattgtttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="90760" stop="91756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91060" g_stop="91456" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="415"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E221376" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91060" e_stop="91456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAA</genome_strand>
        <mrna_strand>AAGGTTAAAAAATAAAAAAATGGGCGCCTTGCTATGATTGCCTGGTTAGGCTTTTATGTCCAAACCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221294" ref_strand="+" ref_description="SGN-E221294 [cLEL-22-J10](-)">
      <seq>gttgcctggttaggcttttatgtccaagccgctcttacgggtaaaggccctgtgcaaaaccttctggagcatatctcagatccattccacaataacttgctctccattctaaagtctctgtaagagaattcacttatccaaagttgacaatggggtttaagcctcccaggtataattgttctgtcttctttatatttaaggctgtaatatgtgaactcataattcatctgaaaatagtgtcatacctagaaaaggtgaagacatgttgtgcccagaagagtatttgaggttgtccataccaatgaaccttatatggtcttgtttataatgggatgttaaatgactattgttattgtttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="90796" stop="91756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91096" g_stop="91456" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="362" polyA_stop="379"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E221294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91096" e_stop="91456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAA</genome_strand>
        <mrna_strand>GTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323115" ref_strand="+" ref_description="SGN-E323115 [cTOB-28-F7]">
      <seq>taaaactccaagtaatttggtagtgacattgctcgccttcactcttgtgatgctcatttggaatctccaaccttactacgataccatccttaatccccctgcatcctccaacattaccgaccctaacaaacgaaccttcattacctacggcaatgccgcctctctcttcgtccagatgggagcctatcgcggcggtcccactactttcgccgtcgtcggtctcgcttccaagccgcttcacgtctttggccgcccatggtataaatgcgagtggatccccaatactaatacaaactcatctaaggccaaagcctataagatcctccctgactggggttacggccgtgtctacactgtggtggttgtgaactgcacatttactgtgaatcctaaccttgataataacggagggaagctcattctctacgcttactatagtgagtcacccaagagatacgagaaaatcacagcattggaggaagcaccanggtcttacaaccaatccaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="94189" stop="95299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94489" g_stop="94999" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E323115" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94489" e_stop="94999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTCCAAGTAATTTGGTAGTGACATTGCTCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTC</genome_strand>
        <mrna_strand>TAAAACTCCAAGTAATTTGGTAGTGACATTGCTCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCANGGTCTTACAACCAATCCAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335579" ref_strand="+" ref_description="SGN-E335579 [cTOE-2-L12]">
      <seq>tcgccttcactcttgtgatgctcatttggaatctccaaccttactacgataccatccttaatccccctgcatcctccaacattaccgaccctaacaaacgaaccttcattacctacggcaatgccgcctctctcttcgtccagatgggagcctatcgcggcggtcccactactttcgccgtcgtcggtctcgcttccaagccgcttcacgtctttggccgcccatggtataaatgcgagtggatccccaatactaatacaaactcatctaaggccaaagcctataagatcctccctgactggggttacggccgtgtctacactgtggtggttgtgaactgcacatttactgtgaatcctaaccttgataataacggagggaagctcattctctacgcttactatagtgagtcacccaagagatacgagaaaatcacagcattggaggaagcaccagggtcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="94221" stop="95284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94521" g_stop="94984" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E335579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94521" e_stop="94984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTAC</genome_strand>
        <mrna_strand>TCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212114" ref_strand="+" ref_description="SGN-E212114 [cLEC-75-B11]">
      <seq>tctcttcgtccagatgggagcctatcgcggcggtcccactactttcgccgtcgtcggtctcgcttccaagccgcttcacgtctttggccgcccatggtataaatgcgagtggatccccaatactaatacaaactcatctaaggccaaagcctataagatcctccctgactggggttacggccgtgtctacactgtggtggttgtgaactgcacatttactgtgaatcctaaccttgataataacggagggaagctcattctctacgcttactatagtgagtcacccaagagatacgagaaaatcacagcattggaggaagcaccagggtcttacaaccaatccaagttcagcccgccatatacctacgagtatctgtattgcggttcctccttgtatgggaatttgagtgcatctaggatgagggagtggatggcctatcacgcctggtttttcgggcccagctcccatttcgtgtttcacgacgccggcggggtgtcatccgaggtaagggccgtgctggagccgtgggtacaggctggtagggtcacgcttcaggatataagggaccaatccgagttcgatggctactattacaaccagtttttggtggtgaatgattgccctcatcgctacagacactctgcctattggaccttctactttgatgttgacgagtacatatatcttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="94351" stop="95642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94651" g_stop="95342" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E212114" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94651" e_stop="95342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGAAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCTCCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTG</genome_strand>
        <mrna_strand>TCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGGAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCCTCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574667" ref_strand="+" ref_description="SGN-E574667 [34171]">
      <seq>cttactatagtgagtcacccaagagatacgagaaaatcactagcattggaggaaccgccagggtcttacaaccagtccaagttcagcccgccatatccctacgagtatttgtattgcggttcttccttgtatgggaatttgagtgcctctaggatgagggagtggatggcctatcacgcctggtttttcgggcccagctcccatttcgtgtttcacgacgctggcggggtgtcatccgaggtaagggcggtgctggagccgtgggtacagactggtaaggtcacgcttcaggatataagggaccagtccgagttcgatggctactattacaaccagtttttggtggtgaatgattgcctccatcgctaccgacacgctgccaattggaccttctactttgatgtggacgagtacatctatcttcctgatgccaacactactctcgaatctgtgttaagagacttctccaacaatactcagttcaccattgagcaaaatgccatgtccagcatcctctgcttgaacgattcctctcaaaactattccaggctgtggggctttgagaagttgttgttcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="94617" stop="96247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94917" g_stop="95463" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95464" i_stop="95915" i_length="452">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95916" g_stop="95947" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="580" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E574667" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94917" e_stop="95463"/>
          <exon e_start="95916" e_stop="95947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCAC-AGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGAAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCTCCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTGATGCCAACACTACTCTCGAATCTGTGTTAAGAGACTTCTCCAACAATACTCAGTTCACCATTGAGCAAAATGCCATGTCCAGCATCCTCTGTTTGAACAATTCCTCTCAAAACTATTCCAGGTTAATCTCCATAATTTCTCTACAATTGTTTTCACTTAATTATATCATTGCTCTTCTTGTTTCTTTGTCATTGATTTTCTCTCTTATACAAAGGCATTCGTTTATCTCTTAACTAAAACTTGATTGATTGATCCATCTTTTAATGCCTATTGGCTTATTAGTAGTCGATACTTTAGGGGTTGCTGATCTAAGTTCCTTACCATCAATGCCTATTCTGTTAAATTTGAGATTCTCTTTAAGAGTTTCTGAAGCTTTCCTTCAATTGTAAGTGCATGTTCATGTGTTTGTATTTACAAAGAATGCAGTCACATTAATATATGGTAGAACCAAGTTTTGCACTCTACTATTACAATTTGTCAAAGGTATTTGCGTTCCCATCAAATCAAATCAACAATGAAATGAAAATCTTTTAACATCTTGCTGTCATACTCTCCGTTTGTTATTAATTACAGGCTGTGGGGCTTTGAGAAGTTGTTGTTCAGAG</genome_strand>
        <mrna_strand>CTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACTAGCATTGGAGGAACCGCCAGGGTCTTACAACCAGTCCAAGTTCAGCCCGCCATATCCCTACGAGTATTTGTATTGCGGTTCTTCCTTGTATGGGAATTTGAGTGCCTCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCTGGCGGGGTGTCATCCGAGGTAAGGGCGGTGCTGGAGCCGTGGGTACAGACTGGTAAGGTCACGCTTCAGGATATAAGGGACCAGTCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCTCCATCGCTACCGACACGCTGCCAATTGGACCTTCTACTTTGATGTGGACGAGTACATCTATCTTCCTGATGCCAACACTACTCTCGAATCTGTGTTAAGAGACTTCTCCAACAATACTCAGTTCACCATTGAGCAAAATGCCATGTCCAGCATCCTCTGCTTGAACGATTCCTCTCAAAACTATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGGGCTTTGAGAAGTTGTTGTTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612325" ref_strand="+" ref_description="SGN-E612325 [62086]">
      <seq>ctgtggggctttgagaagttgttgttcagagactcgagaagtaacattaggagagatcggaagtatgccatacaggcaaaaaatgcatatgcaacaggagtacacatgtcggaaaatgtagtaggagggactttgcaccagacagaaaccaagatccgctactatcattatcacaactccatcacggtacatgaggagctgtgtcgtgagtttttacccatatccgctaagcataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="95617" stop="96454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95917" g_stop="96154" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E612325" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95917" e_stop="96154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGGGCTTTGAGAAGTTGTTGTTCAGAGACTCGAGAAGTAACATTAGGAGAGATCGCAAGTATGCCATACAGGCAAAAAATGCGTATGCAACAGGTGTGCACATGTCGGAAAATGTAGTAGGAGGGACTTTGCACCAGACAGAAACTAAGATCCGCTACTATCATTATCACAACTCCATCACGGTACATGAGGAGCTGTGTCGTGAGTTTTTACCCATGTCTGCTAAGCATAACA</genome_strand>
        <mrna_strand>CTGTGGGGCTTTGAGAAGTTGTTGTTCAGAGACTCGAGAAGTAACATTAGGAGAGATCGGAAGTATGCCATACAGGCAAAAAATGCATATGCAACAGGAGTACACATGTCGGAAAATGTAGTAGGAGGGACTTTGCACCAGACAGAAACCAAGATCCGCTACTATCATTATCACAACTCCATCACGGTACATGAGGAGCTGTGTCGTGAGTTTTTACCCATATCCGCTAAGCATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215918" ref_strand="+" ref_description="SGN-E215918 [cLEL-15-L14](-)">
      <seq>atcaaggattttgagcgaaatactatcaatattaatgcagctcccgaccataccaataactcataggaccagttatttcacccttacatagtacagcagtattgtaccataattttagttaccacagtgaagagaaaggaactggtgaacaagtgtttcagtagtagtgttcatccctactcctaattcttgcaactcctgtagggtcaccacactttatttctgctggctggatttggttattaatatcaaatcattcatttgtatccacatattgcaaagttaggttgatttgggaaaagagagagatgaggatttgtctgtaaatggtaatcgttaacattttcttttgcgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="95917" stop="96877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96217" g_stop="96571" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="374"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E215918" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96217" e_stop="96571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTTGCGA</genome_strand>
        <mrna_strand>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTTGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215646" ref_strand="+" ref_description="SGN-E215646 [cLEL-15-L14](-)">
      <seq>atcaaggattttgagcgaaatactatcaatattaatgcagctcccgaccataacaataactcataggaccagttatttcacccttacatagtacagcagtattgtaccataattttagttaccacagtgaagagaaaggaactggtgaacaagtgtttcagtagtagtgttcatccctactcctaattcttgcaactcctgtagggtcaccacactttatttctgctggctggatttggttattaatatcaaatcattcatttgtatccacatattgcaaagttaggttgatttgggaaaagagagagatgaggatttgtctgtaaatggtaatcgttaacattttcttttgcggaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="95917" stop="96877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96217" g_stop="96567" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="374"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E215646" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96217" e_stop="96567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTT</genome_strand>
        <mrna_strand>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATAACAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395247" ref_strand="+" ref_description="SGN-E395247 [TUS-46-A18]">
      <seq>cttcctcctcgaatatcgtcgatcaaaagcagctgaccagctacgtcatctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagtaaatacaaaacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104134" stop="105395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104434" g_stop="105095" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E395247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104434" e_stop="105095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAAT</genome_strand>
        <mrna_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391610" ref_strand="+" ref_description="SGN-E391610 [TUS-24-A17]">
      <seq>cttcctcctcgaatatcgtcgatcaaaagcagctgaccagctacgtcatctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgcttcacacgtgtatgtgtatatatatatatatatagtaaatacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104134" stop="105389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104434" g_stop="105089" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E391610" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104434" e_stop="105089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAA</genome_strand>
        <mrna_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTTCACACGTGTATGTGTATATATATATATATATAGTAAATACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395248" ref_strand="+" ref_description="SGN-E395248 [TUS-46-A20]">
      <seq>cttcctcctcgaatatcgtcgatcaaaagcagctgaccagctacgtcatctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttaatgctcttctctcgctctacacgtgtatgtgtatatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104134" stop="105368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104434" g_stop="105068" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E395248" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104434" e_stop="105068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATA</genome_strand>
        <mrna_strand>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAATGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368666" ref_strand="+" ref_description="SGN-E368666 [TUS-22-J20]">
      <seq>ttcctcctcgaatatcgtcgatcaaaagcagctgaccagctacgtcatctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagtaaatacaaaacanatatatattttacatatatacgattaaatttccttgtatgtaaatggtacttaattaattagcttgtacaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104135" stop="105473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104435" g_stop="105171" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="737" r_length="737" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E368666" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104435" e_stop="105171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAAC</genome_strand>
        <mrna_strand>TTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACANATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237460" ref_strand="+" ref_description="SGN-E237460 [cLED-19-I17]">
      <seq>ttcctcctcgaatatcgtcgatcaaaagcagctgaccagctacgtcatctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgccgaccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatatttctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104135" stop="105299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104435" g_stop="105000" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E237460" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104435" e_stop="105000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTT</genome_strand>
        <mrna_strand>TTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCCGACCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207442" ref_strand="+" ref_description="SGN-E207442 [cLEC-36-C3]">
      <seq>catctcaattggtggagagctccgtcaatatagcgttcccatcaacgtctctcaagttcttcaatctgacatctcttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104180" stop="105377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104480" g_stop="105077" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E207442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104480" e_stop="105077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATAT</genome_strand>
        <mrna_strand>CATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368665" ref_strand="+" ref_description="SGN-E368665 [TUS-22-J20](-)">
      <seq>caagttcttcaatctgacatctctcccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagtaaatacaaaacaaatatatattttacatatatacgattaaatttccttgtatgtaaatggtacttaattaattagcttgtacaacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104232" stop="105473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104532" g_stop="105174" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E368665" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104532" e_stop="105174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAAC</genome_strand>
        <mrna_strand>CAAGTTCTTCAATCTGACATCTCTCCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391844" ref_strand="+" ref_description="SGN-E391844 [TUS-24-A17](-)">
      <seq>cttttccaccttcctatgcagttccgaccgtctttactttgaccatttcataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagtaaatacaaaacaaatatatattttacatatatacgattaaatttccttgtatgtaaatggtacttaattaattagcttgtacaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104252" stop="105473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104552" g_stop="105175" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E391844" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104552" e_stop="105175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACC</genome_strand>
        <mrna_strand>CTTTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345373" ref_strand="+" ref_description="SGN-E345373 [cTOF-13-E6]">
      <seq>ataccttcacttgattcccaataccagcttcttcccaatcagatctatttcatgcttccggcctccaagcttaaatatccactcactgcctctgacatggcagctcttgccctaaaggcaagcactgctctggaagaactcaacaaaaacaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgcttcttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagnaaatacaaaacaaatatatattttacatatatacgattaaatttccttgtatgtaaatggtacttaattaattagcttgtacaacaacaacaaccatgtattacttattagtacagtttaaccaaaaaaatctacacttgacgataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104301" stop="105528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104601" g_stop="105227" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="638"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E345373" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104601" e_stop="105227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACCATGTATTACTTATTAGTACAGTTTAACCAAAAAAATCTACACTTGACGATAC</genome_strand>
        <mrna_strand>ATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGNAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACCATGTATTACTTATTAGTACAGTTTAACCAAAAAAATCTACACTTGACGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397654" ref_strand="+" ref_description="SGN-E397654 [TUS-46-A20](-)">
      <seq>acaaaagccgaaagtctaggaagatcacgagtaagaaccgaatttcacccatgctttttccactagaacaagaaaccaataattattacaagtccactaccgtaggacttgggatttccatgagatctgcatcggtcagaaaattgcagcgattatcttcacgccgggcaaagatggctgtgcgatccttccgtaagcttatcaccattcaagaagggttcgttcttttttagttaatgatatattctttttggttgccggtaaacatgcgatgcgagttagtgctcttctctcgctctacacgtgtatgtgtatatatatatatatatagtaaatacaaaacaaatatatattttacatatatacgattaaatttccttgtatgtaaatggtacttaattaattagcttgtacaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="104449" stop="105473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104749" g_stop="105175" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E397654" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104749" e_stop="105175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACC</genome_strand>
        <mrna_strand>ACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTTTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375944" ref_strand="+" ref_description="SGN-E375944 [TUS-40-C20]">
      <seq>tgtgttggcatttaatgcatttggtttacctatccctactccatcttctttgtcaatctcgaagtcgaagattattacatataattgtgtcggctggaattggattgcccctgcagctcctcagtattgatataccttcactccatctgattaaccatttttaattaataataaaaactactcttctttcagagctctcatgtcctcaatatgtctcccacaccactagaaccagtacattataaccatcattctcccaactccaatcatactcccaaattccagcgcaacttgcagtcttccatggaattgatgaaagaaattactactctcgaaattgagataatgcgtttggaacgatatcttctctcactatatcggacagctctcccgcttgtattggaaaataatcagaaaatcaagataagctcccctacccagtgtacaacacaccaatcatactccgatgttgaaatggatacgtgtgcggatctaatctccgctgcacatgctttggctggtgaaaaattaacggattctgcccaccgtagccttgcggatcacctcactgcctctcgcatggatgaccttcttagttatcctgataggctgtctgaagaaatagtcaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="106854" stop="108503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107154" g_stop="107381" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107448" g_stop="107504" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107690" g_stop="107926" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="522" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="107927" i_stop="108091" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108092" g_stop="108203" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="634" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E375944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107154" e_stop="107381"/>
          <exon e_start="107448" e_stop="107504"/>
          <exon e_start="107690" e_stop="107926"/>
          <exon e_start="108092" e_stop="108203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGTAAGCTATACATTACTGTTATTGTTGTTATTATTATTTTCATTTACCAGATTTTGATTCTTACAGGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAGGTACATACATACATTGCTAGTATTTCTGTATTAGACTAGCTACTTTAATTTGTTGTATGCAATTCTAATTCAAGGAAACTCTTTGATATTTCAAGTTCACAGAGAATTTTTCAACCCTCATAATTTTTTTTGTCTGATATTGGAACATTGTAGAATGAGTCTGTAATAGGCAATTCCTTTTTCAGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGTGTAAGTGATCAGATTCAGACTGCCAAAAACTCATCGTCTATAAGGGTCAATACATCCAACTCCTACACTTTTGACATATATACTATCAGTATTTTCTTTCAGTTAGAATTGTCTCACTTGTCTTTCCTCAAGGCATTAATTTGGTAACAAAGTGTCGGTCTGCAGGAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCA</genome_strand>
        <mrna_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA..................................................................GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG.........................................................................................................................................................................................CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGT.....................................................................................................................................................................GAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321100" ref_strand="+" ref_description="SGN-E321100 [cTOB-13-M23]">
      <seq>tgtgttggcatttaatgcatttggtttacctatccctactccatcttctttgtcaatctcgaagtcgaagattattacatataattgtgtcggctggaattggattgcccctgcagctcctcagtattgatataccttcactccatctgattaaccatttttaattaataataaaaactactcttctttcagagctctcatgtcctcaatatgtctcccacaccactagaaccagtacattataaccatcattctcccaactccaatcatactcccaaattccagcgcaacttgcagtcttccatggaattgatgaaagaaattactactctcgaaattgagataatgcgtttggaacgatatcttctctcactatatcggacagctctcccgcttgtattggaaaataatcagaaaatcaagataagctcccctacccagtgtacaacacaccaatcatactccgatgttgaaatggatacgtgtgcggatctaatctccgctgcacatgctttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="106854" stop="108222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107154" g_stop="107381" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107448" g_stop="107504" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107690" g_stop="107922" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="518" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E321100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107154" e_stop="107381"/>
          <exon e_start="107448" e_stop="107504"/>
          <exon e_start="107690" e_stop="107922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGTAAGCTATACATTACTGTTATTGTTGTTATTATTATTTTCATTTACCAGATTTTGATTCTTACAGGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAGGTACATACATACATTGCTAGTATTTCTGTATTAGACTAGCTACTTTAATTTGTTGTATGCAATTCTAATTCAAGGAAACTCTTTGATATTTCAAGTTCACAGAGAATTTTTCAACCCTCATAATTTTTTTTGTCTGATATTGGAACATTGTAGAATGAGTCTGTAATAGGCAATTCCTTTTTCAGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGC</genome_strand>
        <mrna_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA..................................................................GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG.........................................................................................................................................................................................CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319893" ref_strand="+" ref_description="SGN-E319893 [cTOB-12-K18]">
      <seq>tgtgttggcatttaatgcatttggtttacctatccctactccatcttctttgtcaatctcgaagtcgaagattattacatataattgtgtcggctggaattggattgcccctgcagctcctcagtattgatataccttcactccatctgattaaccatttttaattaataataaaaactactcttctttcagagctctcatgtcctcaatatgtctcccacaccactagaaccagtacattataaccatcattctcccaactccaatcatactcccaaattccagcgcaacttgcagtcttccatggaattgatgaaagaaattactactctcgaaattgagataatgcgtttggaacgatatcttctctcactatatcggacagctctcccgcttgtattggaaaataatcagaaaatcaagataagctcccctacccagtgtacaacacaccaatcatactccgatgttgaaatggatacgtgtgcggatctaatctccgctgcacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="106854" stop="108217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107154" g_stop="107381" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107448" g_stop="107504" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107690" g_stop="107917" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="513" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E319893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107154" e_stop="107381"/>
          <exon e_start="107448" e_stop="107504"/>
          <exon e_start="107690" e_stop="107917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGTAAGCTATACATTACTGTTATTGTTGTTATTATTATTTTCATTTACCAGATTTTGATTCTTACAGGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAGGTACATACATACATTGCTAGTATTTCTGTATTAGACTAGCTACTTTAATTTGTTGTATGCAATTCTAATTCAAGGAAACTCTTTGATATTTCAAGTTCACAGAGAATTTTTCAACCCTCATAATTTTTTTTGTCTGATATTGGAACATTGTAGAATGAGTCTGTAATAGGCAATTCCTTTTTCAGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCT</genome_strand>
        <mrna_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA..................................................................GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG.........................................................................................................................................................................................CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378800" ref_strand="+" ref_description="SGN-E378800 [TUS-40-C20]">
      <seq>tgtgttggcatttaatgcatttggtttacctatccctactccatcttctttgtcaatctcgaagtcgaagattattacatataattgtgtcggctggaattggattgcccctgcagctcctcagtattgatataccttcactccatctgattaaccatttttaattaataataaaaactactcttctttcagagctctcatgtcctcaatatgtctcccacaccactagaaccagtacattataaccatcattctcccaactccaatcatactcccaaattccagcgcaacttgcagtcttccatggaattgatgaaagaaattactactctcgaaattgagataatgcgtttggaacgatatcttctctcactatatcggacagctctcccgcttgtattggaaaataatcagaaaatcaagataagctcccctacccagtgtacaacacaccaatcatactccgatgttgaaatggatacgtgtgcggatctaatctccgctgcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="106854" stop="108214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107154" g_stop="107381" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107448" g_stop="107504" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="285" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107690" g_stop="107914" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="510" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E378800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107154" e_stop="107381"/>
          <exon e_start="107448" e_stop="107504"/>
          <exon e_start="107690" e_stop="107914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTAGTAAGCTATACATTACTGTTATTGTTGTTATTATTATTTTCATTTACCAGATTTTGATTCTTACAGGAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAGGTACATACATACATTGCTAGTATTTCTGTATTAGACTAGCTACTTTAATTTGTTGTATGCAATTCTAATTCAAGGAAACTCTTTGATATTTCAAGTTCACAGAGAATTTTTCAACCCTCATAATTTTTTTTGTCTGATATTGGAACATTGTAGAATGAGTCTGTAATAGGCAATTCCTTTTTCAGCGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACAT</genome_strand>
        <mrna_strand>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA..................................................................GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG.........................................................................................................................................................................................CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375943" ref_strand="+" ref_description="SGN-E375943 [TUS-40-C20](-)">
      <seq>cgcttgtattgaaaaataatcaaaaaatcaagataagctcccctacccagtgtacaacacaccaatcatactccgatgttgaaatggatacgtgtgcggatctaatctccgctgcacatgctttggctggtgaaaaattaacggattctgcccaccgtagccttgcggatcacctcactgcctctcgcatggatgaccttcttagttatcctgataggctgtctgaagaaatagtcaaatgcatatcttgtatatactgcaaatttgccaatcccaatattcttgctccaaagggattatcagtttcttctacttcgtcattgtcatcatcaagcacattttctccgagaaatctttcgggcagctggagctcacatcacaatgaggagagcactgagcagtatgaatttgaagtgatagaaattttgaagatatgtctagatgatgatagtttcaattatgccacaacaatgctgcataagttcaggacactggttaagagccttgaaaaggttgatccaagaaacaagtaatccaaggagattattcatttaactgtcaatattagtgttgtacttatataataaaaatatttctctcatttaattgcgaagtcatgtaagcatcattatatatactgtgtgcgggtggttcagatctttccactaactacatttctctctttaagtgttgttttcagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="107496" stop="111371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107796" g_stop="107926" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107927" i_stop="108091" i_length="165">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108092" g_stop="108447" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="487" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108448" i_stop="108800" i_length="353">
            <donor d_prob="0.425" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108801" g_stop="108840" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="527" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108841" i_stop="110890" i_length="2050">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110891" g_stop="111074" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="711" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E375943" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107796" e_stop="107926"/>
          <exon e_start="108092" e_stop="108447"/>
          <exon e_start="108801" e_stop="108840"/>
          <exon e_start="110891" e_stop="111074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGTGTAAGTGATCAGATTCAGACTGCCAAAAACTCATCGTCTATAAGGGTCAATACATCCAACTCCTACACTTTTGACATATATACTATCAGTATTTTCTTTCAGTTAGAATTGTCTCACTTGTCTTTCCTCAAGGCATTAATTTGGTAACAAAGTGTCGGTCTGCAGGAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAGGTTATTTGCAACAAACACAAGTAGTTCAAATAGAGTTAAAGAGTACAAAAATCTTCAATACCTGCTAGTGTGGACTTGATTAAAAAGCATGTTAAGAAGTGTTCGACAAGCTTAATTCACCAATTTGAATTTGTCATACTAATTTGAAAGCTGTAAAATGTTCCATCTAAATGGTAAGTTCTACTGCATCAGAAATTGTTTTTATAAATAATTGTCACTTTTCTCCCTCCTTTCTCCACCAATCAAGGCTAAAGAGAAGATGCAACTTCTAAATGGAGAAATGACAATACAATCTGAATATACTCAATATAGTAGTATATAAGTTTTATTTTTACTACGTTGATGCTCTGCAGGACACTGGTTAAGAGCCTTGAAAAGGTTGATCCAAGAAACATGACGCGTGAAGAGAAGTTAACATTCTGGATTAATATTCACAATGCCCTGGTGATGCATGTAAGATTTTCTCAAAGATAACTTTTCAACATTAGCTTAGTAAAGTTTTACCCTGAAACAAATTGATATGGATTATCCAGTATTGATGAAAAACATTTTGCTTACCAGACTACAAAATCATCCAAGGTGGAGCTATTGTTTTAAAGTTTCAACCTTTTTATTTATTCGTTTCGTACTCTAATTGGGAGGTCATGACACTCTCAGTTATACTTCTCGTCGCCAATACCATACTAGGACTAAATGTGTTGTTCAAATAATCACACATGAAGTGCCATTCTGAAATGCATTATGCGTCCTTTTGATTGGCTAAGTACGTAGTGTACTTTATACTAGCATCAGCTATTCTTGCACTCATTGCTCAAGACTAGCATTTGATTTGGTCTCCTAATATGGGGACTACAGTGTTTCTCTTTCTTTTTTAACTATTTAGTTCATCCTATTGAAGCCTGTTATGAGGTACTATATGACTTCTTTTCAGGCTTATTTAGCCTATGGAACTCAAAATTCTGTCAGAAGTTCTTCAATCTTGAAGGTAAAAGGAATAGCCCTTATCTTTTTTTTAAAAAAAGCATTTACTTATATATAGTATCAAAAAATCTGAGTTTGTCATAAAACTACTGCAGGCAGCTTATAATGTGGGTGGTCATTGCGTAAATGCTTATGTCATACAGAGCTCCATATTAGGGATACAACCACACTATTCTGCACCGGTATGCTGAATGCTAAGTAAAATCCTATTCTAAGATTATCTTACCTTTTCAAAAAAAAAACAAAAACGAGAAGCATCCTATTACTAGATTGACATGCCTGCGTCATTTCATGATAAAACTATTTTACTAGGTTTCTTAGCACTTCTAGCTAACTTGCTTGTGGAGCACCAGCGTTACATTCTCTTAATTAGTGAATTGTTCTTCAATGCTATATTAGTTAGAGAAATGCTTGAAATTATTTGCTTAATAATCTGATCTTCCTGTGAAGGAAAGAAAATGCTAACAAAAACAGACAAGTATAGCTTGTTAAATCATAATTATGCTTGTAAAGAGGATGGTCTTATCCAACATATTTTTTATTGAGTGGTTCCCACTTCCCAGCAGTTTCGCATCTATATTTTGTAAGTTTTACATTCAGATACTATTGATATGAGTTTGGCTCCCCCGTATGAACTACAACCTCCATCTCAATTCTTTTAACCTATTTTCTTTTTTAGTTCGTTTAAAAAAGAATGACTCTTTGGTACATTTGACATATTTTAATTTAAGACCACAAAATTCAAAATTCATTATTTATTTTCTTAAACTCTGTGTCTGGTCAATACAGGTAAAACAAAATTAAACTGAGGAGTAACAATTAAAATACAAAAGGGTGGGATAGGGAAAAATAATTGTTTAAAAAGGAGGAGGAACCTTTGTAGCATTCCCTGGATTCTATTAATTATGCGTTTTATGGACTCGATCCTTTCTCTAATACAACATGAATGCAGAGGCTACGGACGCTCTTTTCTCCAGGAAAAAAGTTTGCGACAGGAAATTGTAGACATACATATGCGATTGAGTACCCTGAGCCACTTGTTCACTTTGCGCTGTCTTTGGGTGCATCTTCTGATCCCGCGGTAATGTTCCTGCAAGCTATTAGTTTAAAAAATTCATGGACTTCGCATTTCTAGTATGCATTTTTAATGCAATATGTTGACACGTGCAGATTCAGGTTTACACAGCGAAGAACGTATTTCAGGATCTTAAAGTAGCAAAAGAGGAGTTTATACGGGCTACAATTTGCATTAACAAGGACAAAAGGATTTATCTGCCTAAAATCATATGCTATTTTGCAAAAGATATGTCCCTGAGCACGGATGAAGTAGTTGAAACTATCATGGGATCTCTACCAGAAACTCAGATGAAACTAGTCAGATCCTGCATGAAGGAGTACAGAGCCGATAAGTTACTTTATTGGTTGCCACAAAGTTGGACGTTTAGATATTTGATCCAGAAACAAGTAATCCAAGGAGATTATTCATTTAACTGTCAATATTAGTGTTGTACTTATATAATAAAAATATTTCTCTCATTTAATTGCGAAGTCATGTAAGCATCATTATATATACTGTGTGCGGGTGGTTCAGATCTTTCCACTAACTACATTTCTCTCTTTAAGTGTTGTTTTCAGAAAATATATCA</genome_strand>
        <mrna_strand>CGCTTGTATTGAAAAATAATCAAAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGT.....................................................................................................................................................................GAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAG.................................................................................................................................................................................................................................................................................................................................................................GACACTGGTTAAGAGCCTTGAAAAGGTTGATCCAAGAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTAATCCAAGGAGATTATTCATTTAACTGTCAATATTAGTGTTGTACTTATATAATAAAAATATTTCTCTCATTTAATTGCGAAGTCATGTAAGCATCATTATATATACTGTGTGCGGGTGGTTCAGATCTTTCCACTAACTACATTTCTCTCTTTAAGTGTTGTTTTCAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550286" ref_strand="+" ref_description="SGN-E550286 [TUS-5-A32]">
      <seq>aattggatgactaagaatgtcataacaccctatggatgttcagtctggagagctattaggaatctttggccaaagatacaaatcagaactaaggtgaggataggaaatgggcagaaaacctcttttggcatgacaagtgggcagggctttgaacaatgaaacaacaacatctggagctatacactctaagccagcaacaagaagccacagttgccatgatgtggactggacaaggatggaatctatatctaaggagatatctgaatgattgggagattgggaggataacagaattctataactcagtagcaagtttcaacaatctgactgacgaagtggacagactagaattgaacagaaacagtaagggaattttttctgtcaaatctgcatacagggagctaatgtagaagtggtgaaggaaagagattggccttggaagatgatatggaaaccaaaaattccctacaaagttaactgtttcatctggcttctggccaaagaagcagtgttaactcatgataacctgaacaaaaggggtcaccagctaaccgctggctgttttttatgtgggggacaagttgagacaatcaaccatctttttttgcactgcaaatggacagaccagctttggaggatgttcatcagttggaaagggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="120965" stop="119680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120665" g_stop="120043" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E550286" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120665" e_stop="120043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGATTGACTAAGAATGTCATAAAACCTTATGGATGCTCAGTCTGGAAAGCTATTAGGAATCTTTGGCCAAAGATGCAGATCAGAAATAAGGTGAGGATAGGAAATGGGCAGAAAACCTCTTTTTTTGGCATGACAAGTGGGGCAGGGCTTTTAACAATGAAACAACAACATCCGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGCATCGATATCTAAGGAGATATCTGAATGATTGGGAGATTGGTAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATGGAACAGAAAAAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGTAGCTAAATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAATGTTAACTGTTTCATCTGGC-TCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAA-AAAAAGGGTCACCAACTAACCGCTGGCTG-TTTTT-TGTGGGGAACAAGCTGAGACAATCAACCATCTTTTTTTGCACTGCAAATGGAC</genome_strand>
        <mrna_strand>AATTGGA-TGACTAAGAATGTCATAACACCCTATGGATGTTCAGTCTGGAGAGCTATTAGGAATCTTTGGCCAAAGATACAAATCAGAACTAAGGTGAGGATAGGAAATGGGCAGAAAACCTC---TTTTGGCATGACAAGT-GGGCAGGGCTTTGAACAATGAAACAACAACATCTGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGAATCTATATCTAAGGAGATATCTGAATGATTGGGAGATTGGGAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATTGAACAGAAACAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGGAGCT-AATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAAAGTTAACTGTTTCATCTGGCTTCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAACAAAAGGGGTCACCAGCTAACCGCTGGCTGTTTTTTATGTGGGGGACAAGTTGAGACAATCAACCATCTTTTTTTGCACTGCAAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389715" ref_strand="+" ref_description="SGN-E389715 [TUS-4-A20]">
      <seq>cgggctgcaggaatttcgcacgagaattggatgactaagaatgtcataacaccctatggatgttcagtctggagagctattaggaatctttggccaaagatacaaatcagaactaaggtgaggataggaaatgggcagaaaacctcttttggcatgacaagtgggcagggctttgaacaatgaaacaacaacatctggagctatacactctaagccagcaacaagaagccacagttgccatgatgtggactggacaaggatggaatctatatctaaggagatatctgaatgattgggagattgggaggataacagaattctataactcagtagcaagtttcaacaatctgactgacgaagtggacagactagaattgaacagaaacagtaagggaattttttctgtcaaatctgcatacagggagctaatgtagaagtggtgaaggaaagagattggccttggaagatgatatggaaaccaaaaattccctacaaagttaactgtttcatctggcttctggccaaagaagcagtgttaactcatgataacctgaacaaaaggggtcaccagctaaccgctggctgttttttatgtggggaacaagttgagacaatcaccatctttttttgcnactgcaatggacagaccagctttggaggatgttcatcagttggaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="120975" stop="119682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120667" g_stop="120049" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="639" r_length="617" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E389715" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120667" e_stop="120049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTGGATTGACTAAGAATGTCATAAAACCTTATGGATGCTCAGTCTGGAAAGCTATTAGGAATCTTTGGCCAAAGATGCAGATCAGAAATAAGGTGAGGATAGGAAATGGGCAGAAAACCTCTTTTTTTGGCATGACAAGTGGGGCAGGGCTTTTAACAATGAAACAACAACATCCGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGCATCGATATCTAAGGAGATATCTGAATGATTGGGAGATTGGTAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATGGAACAGAAAAAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGTAGCTAAATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAATGTTAACTGTTTCATCTGGC-TCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAA-AAAAAGGGTCACCAACTAACCGCTGGCTG-TTTTT-TGTGGGGAACAAGCTGAGACAATCAACCATCTTTTTTTGC-ACTGCAA</genome_strand>
        <mrna_strand>AGAATTGGA-TGACTAAGAATGTCATAACACCCTATGGATGTTCAGTCTGGAGAGCTATTAGGAATCTTTGGCCAAAGATACAAATCAGAACTAAGGTGAGGATAGGAAATGGGCAGAAAACCTC---TTTTGGCATGACAAGT-GGGCAGGGCTTTGAACAATGAAACAACAACATCTGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGAATCTATATCTAAGGAGATATCTGAATGATTGGGAGATTGGGAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATTGAACAGAAACAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGGAGCT-AATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAAAGTTAACTGTTTCATCTGGCTTCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAACAAAAGGGGTCACCAGCTAACCGCTGGCTGTTTTTTATGTGGGGAACAAGTTGAGACAATC-ACCATCTTTTTTTGCNACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228350" ref_strand="+" ref_description="SGN-E228350 [cLED-3-O1]">
      <seq>attggatgactaagaatgtcataacaccctatggatgttcagtctggagagctattaggaatctttggccaaagatacaaatcagaactaaggtgaggataggaaatgggcagaaaacctcttttggcatgacaagtgggcagggctttgaacaatgaaacaacaacatctggagctatacactctaagccagcaacaagaagccacagttgccatgatgtggactggacaaggatggaatctatatctaaggagatatctgaatgattgggagattgggaggataacagaattctataactcagtagcaagtttcaacaatctgactgacgaagtggacagactagaattgaacagaaacagtaagggaattttttctgtcaaatctgcatacagggagctaatgtagaagtggtgaaggaaagagattggccttggaagatgatatggaaaccaaaaattccctacaaagttaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="120964" stop="119880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120664" g_stop="120180" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-E228350" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120664" e_stop="120180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATTGACTAAGAATGTCATAAAACCTTATGGATGCTCAGTCTGGAAAGCTATTAGGAATCTTTGGCCAAAGATGCAGATCAGAAATAAGGTGAGGATAGGAAATGGGCAGAAAACCTCTTTTTTTGGCATGACAAGTGGGGCAGGGCTTTTAACAATGAAACAACAACATCCGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGCATCGATATCTAAGGAGATATCTGAATGATTGGGAGATTGGTAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATGGAACAGAAAAAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGTAGCTAAATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAATGTTAACTG</genome_strand>
        <mrna_strand>ATTGGA-TGACTAAGAATGTCATAACACCCTATGGATGTTCAGTCTGGAGAGCTATTAGGAATCTTTGGCCAAAGATACAAATCAGAACTAAGGTGAGGATAGGAAATGGGCAGAAAACCTC---TTTTGGCATGACAAGT-GGGCAGGGCTTTGAACAATGAAACAACAACATCTGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGAATCTATATCTAAGGAGATATCTGAATGATTGGGAGATTGGGAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATTGAACAGAAACAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGGAGCT-AATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAAAGTTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367761" ref_strand="+" ref_description="SGN-E367761 [cLPT-14-B15]">
      <seq>gcaggaaatgctgatgatgctattgaagaatgtaagtatttggaaagcaaaggtcttctggatgtagaaagtttgcagctttatgcgctttcttattggaaacttggaaaatatgaccttgctctttctatggcaaagagactggcctcatctgctttaccaacggagcatccattggctgctgcctccgtcagtttcatctgtagattagtgtatcatatttcagggaaggaattagctataagaaacatattacaactgccaaaaagagccttccagagttcaagagttaggcttgtagcatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttcatgtgttcgtgagtctctttcatctaacaaagagattgctgcgctggatttcctggccacactgggcttactagtcaaacatggatctaaggactgcctagaagttcagaagggggtcaattatctaagaagagctcttcatacttctccaaacagtcatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="123027" stop="124587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123327" g_stop="123378" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123379" i_stop="123738" i_length="360">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.040" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123739" g_stop="124112" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="426" r_length="374" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124113" i_stop="124195" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.266" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124196" g_stop="124287" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="518" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E367761" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123327" e_stop="123378"/>
          <exon e_start="123739" e_stop="124112"/>
          <exon e_start="124196" e_stop="124287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAGGTATGATTCTTTATTATATTTGCGTTTTTGTTGTTCCTAGTGAGGAATTACTGCTAAAGAAAAATATCATGGTGAGGGATTAGGGCCTGCTTTTTGTCTGTGAACAAAATAACAATTATGAATTGAGTACTGAATTGAGACTTTATATGAGTGCTGAACTACTAGTTCGGCAAAAAGGTTAGGCGTTGTGTCTCTCTTAGTGTTCACTTTAACTAGTTGCTGAAGTCGTGGAGTAGCATCTTGCTTAAAATGTATTTGATATTGTTGTCCTACTTGCATGCTTTTGCTCTCATAATCGAAAATGCCCCATGAGAATGCTTATTGCTTTATTCATTATAAACCTGTTTCCATTTTCGCTAGGTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTATATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATTTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTAGTAAGTTTTCTATTCCAGTTGCGTCTTTTTACTTGATCTTGGGCCTCTAAGTGTAAATCCGGACTTCCTTATCGGGGATTTAGGTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGAT</genome_strand>
        <mrna_strand>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAG........................................................................................................................................................................................................................................................................................................................................................................GTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTGTATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATCTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTA...................................................................................GTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561631" ref_strand="+" ref_description="SGN-E561631 [17826]">
      <seq>cttgctctttcgatggcaaagagactggcctcatctgctttaccaacagagcacccattggctgctgcctccgtcagtttcatctgtagattagtaaatcatatttcangggaaggaattagctatgagatacatattacaactgccaaaaagagccttccagagttcaagagttaggcttgtagtatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttcaagtgttcgtgagtatctttcatctagcaaagagattgctgcactggatttcatggccacactgggcttactagtcaaacatggatctaaggactgcctagaagttcagcagggggtcaattatctaagaagagctcttcatatttctccaaacagtcatttgataaggacccttcttggctatctgttagtagccagcaaagaatggaaagatgttcacatttcagctcgatgcttcagagtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttgagatttttggtgctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatctgtagagaaaattcaacactggagtgccaaacaatcaagatgctgcagaagtgtgtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="123504" stop="126501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123804" g_stop="124112" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124113" i_stop="124195" i_length="83">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.266" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124196" g_stop="124290" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="405" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666">
            <donor d_prob="0.873" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125957" g_stop="126199" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="648" r_length="243" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126393" g_stop="126401" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="657" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E561631" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123804" e_stop="124112"/>
          <exon e_start="124196" e_stop="124290"/>
          <exon e_start="125957" e_stop="126199"/>
          <exon e_start="126393" e_stop="126401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTATATCATATTTCA-GGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATTTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTAGTAAGTTTTCTATTCCAGTTGCGTCTTTTTACTTGATCTTGGGCCTCTAAGTGTAAATCCGGACTTCCTTATCGGGGATTTAGGTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGATAAGGTACATTTTCGTGTTGTCCACTTTGGCATGAACTAGTGAATTGTGCTTGATCAGAGCACTTCAGATTAATGGGTGCAATTCATTTTAATCATGGTTTGCTTTAGATTGGAACAATAAAAAACTAAGCCTCAGTTACTAATAAGTCGGGGCTGACTACATGAATCCTCACGGACCATGTCTTTTCATTTATTTGAATTATGATTTGCTTGAGATTGAAGAGTTGGCTCATTTTGGATGCAATTTTTGTGGTTGTTCCAGATTGAAGTTGGAAAAATACGTGACTTTCTGTTTTTATTTCAGAAAGCATTTTGTTTCCTTTGCTGCTTGAGAAATAAATGCATCTTATTGTGGTGGTTTGAGTTAGGCCTCATTTGTTTGCACTTAAAGAAAGTCTGAATCTGTATGATTTAGATCGTATGCCATTAAGTGCATTCGTTTTCATTAAGATTTAAGTAATTATTTTGTATGAAATAAATCTTAATCATTTAAGATCTTGAATAGAGTCTTAATATCATTAGAGATATTTTTGTTTGGATAGTTTTCATCACCACTCTATCTACAATCACCAGCCACCACCACTAACATGCTCTGCCATCACAACCACTACCATCATTGTCAACCAACATTACTGTAACCAACCACCGATCCCCAACCAGTGGCAACCACCACTACTGTCAGTCGCTACCACACCTATCAAGTTAAAATCTCAGCAAGAGGCAAAAAAAAAGCCAAGTAATCCTGTCCCGTTGGCTAAGGCTGTGGGAAATCTGCAGTTGATTGGTCAACGTGAGTGCTGGTATGGCCACTATTATTATTATAAAAAGATAATAAATAAATTACTGAAGTCATGATTCTTGGTCACAGTCTGTCAGTTCCTACTTGAACTCCTGCAAAGAATTCAATCTTCTACATTAGCATCACTTAATTTACACATCAATGTCCATGCTTGCTATTTAACTCGGGGTGGTAGTTGGAGCGCTTGGCGTTTGCTAAGTTTTCTCGGCCTTTGGAAATCTTTGCACGGATGTCCAGTTCATGCTCAAAAACTCTTGCTGAATATCATTGGTCCGTCTTCTCTCATTTTGCACAATTGATTTGTTCCACGTTGATTTTCGTTTTCTTATATAATGGTAACTGCATAGTCCTCACAAAACTATGCTGGCATCTAGATTTACAAAATATCCTGTGAGTCCTAATGAACCTATTTACAGTTATTCCAAAAACTCTAGTATTGACTCGGACTCCGCCACAAAAAATTCTTTACTCCAGAAATGCAAAAACATAATGTAATCAGCCTTAATTTTCTGCTTAGAGTTAGATTATCCCTCAAAACCCCTTGCATTCCTTTCTCTCCAAACTGTCCACCATATTGTGGCTGGTATGACCTTGCACTATAGTTTCAACAACCCAGCAATTCATGGTGTTTCCTGGCATTAACCACTTCTTCTTTCCCAGATTTTCGTTCGTCTTTCACTACGGGTCCATTTCAATCATGGTGTAATTTGTTTGAATTACTTGCTGTGTTGATCTTGACACTTGAAAGAGTTTAGCGAAAATGCATTGTTGATTGCTATTTGTATATATGGAACTTATTTCCATCTGTAAATTTGTGTTCTTAGTATGATGATTAAAGTTGATTAATCTTCTGCAATATTCTGGTGAATAGGACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAAGTAATCTTCTTTATCCACATGCTGTGGGGCTTTATTTATGAAATTTTATTTCTATTACACACTTTCTGTGGCTCACTTTATTGATAAATAATCTCATACTTCTGGTGAGATGGGAGGAAGACACGTGAATTTATTCCATGAAATATATGCCAAAGCTGTTCTGTGCGTCTAATTTAAATGTTTATATTTATAGGTGTGTCCA</genome_strand>
        <mrna_strand>CTTGCTCTTTCGATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACAGAGCACCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTAAATCATATTTCANGGGAAGGAATTAGCTATGAGATACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGTATCTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCAAGTGTTCGTGAGTATCTTTCATCTAGCAAAGAGATTGCTGCACTGGATTTCATGGCCACACTGGGCTTACTA...................................................................................GTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGCAGGGGGTCAATTATCTAAGAAGAGCTCTTCATATTTCTCCAAACAGTCATTTGATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCTTGGCTATCTGTTAGTAGCCAGCAAAGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTGAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCCAAACAATCAAGATGCTGCAGAA.................................................................................................................................................................................................GTGTGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542304" ref_strand="-" ref_description="SGN-E542304 [TUS-63-I18](-)">
      <seq>ccctcgagactaggagctcttcatacttctccaacagtcatttgataaggacccttcttggctatctgttagtatccagcagggaatggaaagatgttcacatttcagctcgatgcttcagagtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttcagatttttggtgctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatctgtagagaaaattcaacactggagtgcaaaacgatcaagctgctgcagaagtgtgtccatcaggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcgcgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggctcttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagcttctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcatgcaaaaagtactctagagatgcagcttccagataactacctcttctttgcacacttgctactatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataaggtgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagtcgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="123952" stop="127176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124255" g_stop="124290" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="49" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125957" g_stop="126199" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="292" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126393" g_stop="126876" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="776" r_length="484" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E542304" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542304" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124255" e_stop="124290"/>
          <exon e_start="125957" e_stop="126199"/>
          <exon e_start="126393" e_stop="126876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTCATACTTCTCCAAACAGTCATTTGATAAGGTACATTTTCGTGTTGTCCACTTTGGCATGAACTAGTGAATTGTGCTTGATCAGAGCACTTCAGATTAATGGGTGCAATTCATTTTAATCATGGTTTGCTTTAGATTGGAACAATAAAAAACTAAGCCTCAGTTACTAATAAGTCGGGGCTGACTACATGAATCCTCACGGACCATGTCTTTTCATTTATTTGAATTATGATTTGCTTGAGATTGAAGAGTTGGCTCATTTTGGATGCAATTTTTGTGGTTGTTCCAGATTGAAGTTGGAAAAATACGTGACTTTCTGTTTTTATTTCAGAAAGCATTTTGTTTCCTTTGCTGCTTGAGAAATAAATGCATCTTATTGTGGTGGTTTGAGTTAGGCCTCATTTGTTTGCACTTAAAGAAAGTCTGAATCTGTATGATTTAGATCGTATGCCATTAAGTGCATTCGTTTTCATTAAGATTTAAGTAATTATTTTGTATGAAATAAATCTTAATCATTTAAGATCTTGAATAGAGTCTTAATATCATTAGAGATATTTTTGTTTGGATAGTTTTCATCACCACTCTATCTACAATCACCAGCCACCACCACTAACATGCTCTGCCATCACAACCACTACCATCATTGTCAACCAACATTACTGTAACCAACCACCGATCCCCAACCAGTGGCAACCACCACTACTGTCAGTCGCTACCACACCTATCAAGTTAAAATCTCAGCAAGAGGCAAAAAAAAAGCCAAGTAATCCTGTCCCGTTGGCTAAGGCTGTGGGAAATCTGCAGTTGATTGGTCAACGTGAGTGCTGGTATGGCCACTATTATTATTATAAAAAGATAATAAATAAATTACTGAAGTCATGATTCTTGGTCACAGTCTGTCAGTTCCTACTTGAACTCCTGCAAAGAATTCAATCTTCTACATTAGCATCACTTAATTTACACATCAATGTCCATGCTTGCTATTTAACTCGGGGTGGTAGTTGGAGCGCTTGGCGTTTGCTAAGTTTTCTCGGCCTTTGGAAATCTTTGCACGGATGTCCAGTTCATGCTCAAAAACTCTTGCTGAATATCATTGGTCCGTCTTCTCTCATTTTGCACAATTGATTTGTTCCACGTTGATTTTCGTTTTCTTATATAATGGTAACTGCATAGTCCTCACAAAACTATGCTGGCATCTAGATTTACAAAATATCCTGTGAGTCCTAATGAACCTATTTACAGTTATTCCAAAAACTCTAGTATTGACTCGGACTCCGCCACAAAAAATTCTTTACTCCAGAAATGCAAAAACATAATGTAATCAGCCTTAATTTTCTGCTTAGAGTTAGATTATCCCTCAAAACCCCTTGCATTCCTTTCTCTCCAAACTGTCCACCATATTGTGGCTGGTATGACCTTGCACTATAGTTTCAACAACCCAGCAATTCATGGTGTTTCCTGGCATTAACCACTTCTTCTTTCCCAGATTTTCGTTCGTCTTTCACTACGGGTCCATTTCAATCATGGTGTAATTTGTTTGAATTACTTGCTGTGTTGATCTTGACACTTGAAAGAGTTTAGCGAAAATGCATTGTTGATTGCTATTTGTATATATGGAACTTATTTCCATCTGTAAATTTGTGTTCTTAGTATGATGATTAAAGTTGATTAATCTTCTGCAATATTCTGGTGAATAGGACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAAGTAATCTTCTTTATCCACATGCTGTGGGGCTTTATTTATGAAATTTTATTTCTATTACACACTTTCTGTGGCTCACTTTATTGATAAATAATCTCATACTTCTGGTGAGATGGGAGGAAGACACGTGAATTTATTCCATGAAATATATGCCAAAGCTGTTCTGTGCGTCTAATTTAAATGTTTATATTTATAGGTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGT</genome_strand>
        <mrna_strand>AGCTCTTCATACTTCTCC-AACAGTCATTTGATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA.................................................................................................................................................................................................GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATTGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425327" ref_strand="+" ref_description="SGN-E425327 [STM-44-N6]">
      <seq>caaagaatggaaagatgttcacatttcagctcgatgcttcagagtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttgagatttttggtgctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatctgtagagaaaattcaacactggagtgccaaacaatcaagatgctgcagaagtgtgtccatcaggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcgcgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggctcttcgaagtgagctttatgcaaaagatgagatttcttcccagtaccaaaagttccagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagacagttcttcaacgccgctaccctttgtctcactgctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="125687" stop="127729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125987" g_stop="126199" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126393" g_stop="126579" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="400" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126580" i_stop="127332" i_length="753">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127333" g_stop="127429" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="497" r_length="97" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E425327" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125987" e_stop="126199"/>
          <exon e_start="126393" e_stop="126579"/>
          <exon e_start="127333" e_stop="127429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAAGTAATCTTCTTTATCCACATGCTGTGGGGCTTTATTTATGAAATTTTATTTCTATTACACACTTTCTGTGGCTCACTTTATTGATAAATAATCTCATACTTCTGGTGAGATGGGAGGAAGACACGTGAATTTATTCCATGAAATATATGCCAAAGCTGTTCTGTGCGTCTAATTTAAATGTTTATATTTATAGGTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATGGTAACATTTGCTGAACAATTCTAAAACTTACTTTTAATATGCTTAAACTCTTTCCTATAAACTGACTTTTTGGTAGAAGTGTATTTTCCCATTCAAAAGCTCTTCTATTTCTCTCTGCAGAACCCACCATAATAAGTGCCCAGGGGTTGCATTCCACTGTCTGCATTTTCTTCCATCTATATCCATCTTTCTTTCTTACCCTCTGTGTGTCTATTAAAGGCTGATGGTCTTATTGGTCTGATTGGTAATGGGAATTTGATTATTCAGGTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGG</genome_strand>
        <mrna_strand>CAAAGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTGAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCCAAACAATCAAGATGCTGCAGAA.................................................................................................................................................................................................GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGAGATTTCTTCCCAGTACCAAAAGTTCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCGCTACCCTTTGTCTCACTGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703743" ref_strand="+" ref_description="SGN-E703743 [FA22BD07]">
      <seq>gacactagcaatgtccatctgtagagaaaattcaacactggagtgcaaaacgatcaagctgctgcagaagtgtgtccatcaggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcgcgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggctcttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagcttctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcatgcaaaaagtactctagagatgcagcttccagataactacctcttctttgcacacttgctactatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataaggtgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagtcgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtctggcaaagaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaactgcagcttggaatggggaatttattgatgcagaagagtctattgcgcaagcttgcttgttggcgggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccaggcagcagtccgattcagattttttatcacttgctattagaagtctgaagaaagcaaaagacagttcttcaacgccactaccctttgtctcactgctactggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="125831" stop="127732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126131" g_stop="126199" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126393" g_stop="127036" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="713" r_length="644" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="127037" i_stop="127303" i_length="267">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127304" g_stop="127432" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="842" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E703743" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126131" e_stop="126199"/>
          <exon e_start="126393" e_stop="127036"/>
          <exon e_start="127304" e_stop="127432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAAGTAATCTTCTTTATCCACATGCTGTGGGGCTTTATTTATGAAATTTTATTTCTATTACACACTTTCTGTGGCTCACTTTATTGATAAATAATCTCATACTTCTGGTGAGATGGGAGGAAGACACGTGAATTTATTCCATGAAATATATGCCAAAGCTGTTCTGTGCGTCTAATTTAAATGTTTATATTTATAGGTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATGGTAACATTTGCTGAACAATTCTAAAACTTACTTTTAATATGCTTAAACTCTTTCCTATAAACTGACTTTTTGGTAGAAGTGTATTTTCCCATTCAAAAGCTCTTCTATTTCTCTCTGCAGAACCCACCATAATAAGTGCCCAGGGGTTGCATTCCACTGTCTGCATTTTCTTCCATCTATATCCATCTTTCTTTCTTACCCTCTGTGTGTCTATTAAAGGCTGATGGTCTTATTGGTCTGATTGGTAATGGGAATTTGATTATTCAGGTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGGCAC</genome_strand>
        <mrna_strand>GACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA.................................................................................................................................................................................................GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATTGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTCTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATG...........................................................................................................................................................................................................................................................................GTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298052" ref_strand="+" ref_description="SGN-E298052 [cLEW-12-I6]">
      <seq>ttcatattacctccttgtactaaattatcttcagaaggcgcgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggctcttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagcttctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcatgcaaaaagtactctagagatgcagcttccagataactacctcttctttgcacacttgctactatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataaggtgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagtcgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtctggcaaagaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaactgcagcttggaatggggaatttattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="126123" stop="127268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126423" g_stop="126968" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-E298052" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126423" e_stop="126968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGA</genome_strand>
        <mrna_strand>TTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATTGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTCTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>238</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2273" PGL_stop="745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2272" e_stop="1983"/>
            <exon e_start="1871" e_stop="1447"/>
            <exon e_start="1116" e_stop="745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2272" e_stop="1983" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1982" i_stop="1872" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1871" e_stop="1447" e_length="425"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1116" e_stop="745" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2272" stop="1983"/>
              <exon start="1871" stop="1447"/>
              <exon start="1116" stop="948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2116" stop="1983"/>
              <exon start="1871" stop="1447"/>
              <exon start="1116" stop="953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1871" stop="1447"/>
              <exon start="1116" stop="950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1834" stop="1447"/>
              <exon start="1116" stop="749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1832" stop="1447"/>
              <exon start="1116" stop="745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1832" stop="1447"/>
              <exon start="1116" stop="979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1831" stop="1447"/>
              <exon start="1116" stop="745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCATCTCCCAAATGCCTTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCC : GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</gDNA_template>
            <first_frame> V  S  S  P  K  C  L  E  I  T  L  V  *  I  L  T  L  Q  H  A  R  I  R  R  N  Q  V  T  G  S  *  I  *  P  S  N  Y  L  S  A  T  V  A  A  T  S  N  G  C  F  A  T  K  A  S  P  T  T  G  I  V  P  K  P  N  N  S  F  S  H  R  S  Q  R  R  H  S  H  H  Y  L  L  P  Y  Y  *  T  *  F  H  L  Y  S  Q  L  F  P :   L  V  F  M  E  *  H  S  *  M  *  G  S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : V  *  F  D  S  L  C  K  M  L  C  *  *  *  *  *  S  W  R  E  *  F  R  A  S  T  G  *  D  *  *  G  S  *  D  R  L  D  *  Q  R  D  F  A  P  F  R  S  S  Y  A  L  W  R  *  L  E  E  G  C  *  A  C  W  W  Q  K  H  *  G  M  C  G  *  I  C  Q  A  S  F  R  *  A  V  Y  G  P  S  *  I  C  R  N  G  *  *  I  Q  V  *  N  Y  V  S  S  V  *  E  K  A  P  H  T  L  C  *  Y  K  Q  P  N  Y  S  T  </first_frame>
            <second_frame>  F  H  L  P  N  A  L  R  L  H  L  S  K  F  *  R  F  N  M  P  E  S  G  E  I  K  S  Q  A  A  K  S  D  P  Q  T  T  S  P  P  P  S  Q  Q  P  Q  T  A  A  L  P  L  K  R  P  Q  Q  L  E  S  S  P  N  P  T  T  P  S  V  T  D  P  K  D  V  T  P  T  T  I  S  S  R  I  T  E  P  D  F  I  Y  I  P  S  Y  S   : R  W  F  S  W  N  S  I  H  E  C  E  V  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  Y  D  L  T  L  C  A  R  C  Y  V  S  N  D  N  R  V  G  V  N  N  S  E  L  R  R  V  E  I  S  E  E  V  K  T  D  W  T  D  K  E  T  L  H  L  L  E  A  L  M  H  Y  G  D  D  W  K  K  V  A  E  H  V  G  G  R  S  T  K  E  C  V  A  R  F  V  K  L  P  F  G  E  Q  F  M  G  P  P  E  S  A  E  M  D  S  E  S  R  S  E  T  M  Y  L  Q  S  K  R  R  R  L  T  P  F  A  D  T  S  N  P  I  I  A  Q </second_frame>
            <third_frame>   F  I  S  Q  M  P  *  D  Y  T  C  L  N  S  N  A  S  T  C  P  N  Q  A  K  S  S  H  R  Q  L  N  L  T  L  K  L  P  L  R  H  R  R  S  N  L  K  R  L  L  C  H  *  S  V  P  N  N  W  N  R  P  Q  T  Q  Q  L  L  Q  S  P  I  P  K  T  S  L  P  P  L  S  P  P  V  L  L  N  L  I  S  S  I  F  P  V  I  P  :  V  G  F  H  G  I  A  F  M  N  V  R  F  A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  S :   M  I  *  L  F  V  Q  D  A  M  L  V  M  I  I  E  L  A  *  I  I  Q  S  F  D  G  L  R  L  V  R  K  L  R  Q  I  G  L  T  K  R  L  C  T  F  *  K  L  L  C  I  M  A  M  I  G  R  R  L  L  S  M  L  V  A  E  A  L  R  N  V  W  L  D  L  S  S  F  L  S  V  S  S  L  W  A  L  L  N  L  Q  K  W  I  V  N  P  G  L  K  L  C  I  F  S  L  R  E  G  A  S  H  P  L  L  I  Q  A  T  Q  L  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2226" stop="1983"/>
                    <exon start="1871" stop="1447"/>
                    <exon start="1116" stop="745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1041</number_coding_nucleotides>
                  <number_encoded_amino_acids>347</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFNMPESGEIKSQAAKSDPQTTSPPPSQQPQTAALPLKRPQQLESSPNPTTPSVTDPKDVTPTTISSRITEPDFIYIPSYSRWFSWNSIHECEVRFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKYDLTLCARCYVSNDNRVGVNNSELRRVEISEEVKTDWTDKETLHLLEALMHYGDDWKKVAEHVGGRSTKECVARFVKLPFGEQFMGPPESAEMDSESRSETMYLQSKRRRLTPFADTSNPIIAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2253" e_stop="1447"/>
            <exon e_start="1116" e_stop="745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="0.995"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="2253" e_stop="1447" e_length="807"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1116" e_stop="745" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2253" stop="1447"/>
              <exon start="1116" stop="1074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1871" stop="1447"/>
              <exon start="1116" stop="950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1834" stop="1447"/>
              <exon start="1116" stop="749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1832" stop="1447"/>
              <exon start="1116" stop="745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1832" stop="1447"/>
              <exon start="1116" stop="979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1831" stop="1447"/>
              <exon start="1116" stop="745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCCGTAAGTCCCATCTACTTTTCAGCTTTTCTTTTCAAATTTGCTTCTGTATTTTTAGGGTGGAATGGATATAGATGATTCGTGATACTTAATTAGTTCTTCTTCTTCTTTTAGGTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</gDNA_template>
            <first_frame> L  R  L  H  L  S  K  F  *  R  F  N  M  P  E  S  G  E  I  K  S  Q  A  A  K  S  D  P  Q  T  T  S  P  P  P  S  Q  Q  P  Q  T  A  A  L  P  L  K  R  P  Q  Q  L  E  S  S  P  N  P  T  T  P  S  V  T  D  P  K  D  V  T  P  T  T  I  S  S  R  I  T  E  P  D  F  I  Y  I  P  S  Y  S  R  K  S  H  L  L  F  S  F  S  F  Q  I  C  F  C  I  F  R  V  E  W  I  *  M  I  R  D  T  *  L  V  L  L  L  L  L  G  W  F  S  W  N  S  I  H  E  C  E  V  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  Y  D  L  T  L  C  A  R  C  Y  V  S  N  D  N  R  V  G  V  N  N  S  E  L  R  R  V  E  I  S  E  E  V  K  T  D  W  T  D  K  E  T  L  H  L  L  E  A  L  M  H  Y  G  D  D  W  K  K  V  A  E  H  V  G  G  R  S  T  K  E  C  V  A  R  F  V  K  L  P  F  G  E  Q  F  M  G  P  P  E  S  A  E  M  D  S  E  S  R  S  E  T  M  Y  L  Q  S  K  R  R  R  L  T  P  F  A  D  T  S  N  P  I  I  A  Q </first_frame>
            <second_frame>  *  D  Y  T  C  L  N  S  N  A  S  T  C  P  N  Q  A  K  S  S  H  R  Q  L  N  L  T  L  K  L  P  L  R  H  R  R  S  N  L  K  R  L  L  C  H  *  S  V  P  N  N  W  N  R  P  Q  T  Q  Q  L  L  Q  S  P  I  P  K  T  S  L  P  P  L  S  P  P  V  L  L  N  L  I  S  S  I  F  P  V  I  P  V  S  P  I  Y  F  S  A  F  L  F  K  F  A  S  V  F  L  G  W  N  G  Y  R  *  F  V  I  L  N  *  F  F  F  F  F  *  V  G  F  H  G  I  A  F  M  N  V  R  F  A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  S :   M  I  *  L  F  V  Q  D  A  M  L  V  M  I  I  E  L  A  *  I  I  Q  S  F  D  G  L  R  L  V  R  K  L  R  Q  I  G  L  T  K  R  L  C  T  F  *  K  L  L  C  I  M  A  M  I  G  R  R  L  L  S  M  L  V  A  E  A  L  R  N  V  W  L  D  L  S  S  F  L  S  V  S  S  L  W  A  L  L  N  L  Q  K  W  I  V  N  P  G  L  K  L  C  I  F  S  L  R  E  G  A  S  H  P  L  L  I  Q  A  T  Q  L  *  H   </second_frame>
            <third_frame>   E  I  T  L  V  *  I  L  T  L  Q  H  A  R  I  R  R  N  Q  V  T  G  S  *  I  *  P  S  N  Y  L  S  A  T  V  A  A  T  S  N  G  C  F  A  T  K  A  S  P  T  T  G  I  V  P  K  P  N  N  S  F  S  H  R  S  Q  R  R  H  S  H  H  Y  L  L  P  Y  Y  *  T  *  F  H  L  Y  S  Q  L  F  P  *  V  P  S  T  F  Q  L  F  F  S  N  L  L  L  Y  F  *  G  G  M  D  I  D  D  S  *  Y  L  I  S  S  S  S  S  F  R  L  V  F  M  E  *  H  S  *  M  *  G  S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : V  *  F  D  S  L  C  K  M  L  C  *  *  *  *  *  S  W  R  E  *  F  R  A  S  T  G  *  D  *  *  G  S  *  D  R  L  D  *  Q  R  D  F  A  P  F  R  S  S  Y  A  L  W  R  *  L  E  E  G  C  *  A  C  W  W  Q  K  H  *  G  M  C  G  *  I  C  Q  A  S  F  R  *  A  V  Y  G  P  S  *  I  C  R  N  G  *  *  I  Q  V  *  N  Y  V  S  S  V  *  E  K  A  P  H  T  L  C  *  Y  K  Q  P  N  Y  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1893" stop="1447"/>
                    <exon start="1116" stop="745"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVLLLLLGWFSWNSIHECEVRFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKYDLTLCARCYVSNDNRVGVNNSELRRVEISEEVKTDWTDKETLHLLEALMHYGDDWKKVAEHVGGRSTKECVARFVKLPFGEQFMGPPESAEMDSESRSETMYLQSKRRRLTPFADTSNPIIAQ</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2226" stop="1912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFNMPESGEIKSQAAKSDPQTTSPPPSQQPQTAALPLKRPQQLESSPNPTTPSVTDPKDVTPTTISSRITEPDFIYIPSYSRKSHLLFSFSFQICFCIFRVEWI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="2273" e_stop="1983"/>
            <exon e_start="1871" e_stop="1447"/>
            <exon e_start="977" e_stop="811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2273" e_stop="1983" e_length="291"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="1982" i_stop="1872" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1871" e_stop="1447" e_length="425"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="1446" i_stop="978" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="977" e_stop="811" e_length="167"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2273" stop="1983"/>
              <exon start="1871" stop="1447"/>
              <exon start="977" stop="811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGTTTCATCTCCCAAATGCCTTGAGATTACACTTGTCTAAATTCTAACGCTTCAACATGCCCGAATCAGGCGAAATCAAGTCACAGGCAGCTAAATCTGACCCTCAAACTACCTCTCCGCCACCGTCGCAGCAACCTCAAACGGCTGCTTTGCCACTAAAGCGTCCCCAACAACTGGAATCGTCCCCAAACCCAACAACTCCTTCAGTCACCGATCCCAAAGACGTCACTCCCACCACTATCTCCTCCCGTATTACTGAACCTGATTTCATCTATATTCCCAGTTATTCCC : GTTGGTTTTCATGGAATAGCATTCATGAATGTGAGGTTCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : AAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATG</gDNA_template>
            <first_frame> R  F  I  S  Q  M  P  *  D  Y  T  C  L  N  S  N  A  S  T  C  P  N  Q  A  K  S  S  H  R  Q  L  N  L  T  L  K  L  P  L  R  H  R  R  S  N  L  K  R  L  L  C  H  *  S  V  P  N  N  W  N  R  P  Q  T  Q  Q  L  L  Q  S  P  I  P  K  T  S  L  P  P  L  S  P  P  V  L  L  N  L  I  S  S  I  F  P  V  I  P  :  V  G  F  H  G  I  A  F  M  N  V  R  F  A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  R :   S  S  Y  A  L  W  R  *  L  E  E  G  C  *  A  C  W  W  Q  K  H  *  G  M  C  G  *  I  C  Q  A  S  F  R  *  A  V  Y  G  P  S  *  I  C  R  N  G  *  *  I  Q  V  *  N  Y  </first_frame>
            <second_frame>  V  S  S  P  K  C  L  E  I  T  L  V  *  I  L  T  L  Q  H  A  R  I  R  R  N  Q  V  T  G  S  *  I  *  P  S  N  Y  L  S  A  T  V  A  A  T  S  N  G  C  F  A  T  K  A  S  P  T  T  G  I  V  P  K  P  N  N  S  F  S  H  R  S  Q  R  R  H  S  H  H  Y  L  L  P  Y  Y  *  T  *  F  H  L  Y  S  Q  L  F  P :   L  V  F  M  E  *  H  S  *  M  *  G  S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : E  A  L  M  H  Y  G  D  D  W  K  K  V  A  E  H  V  G  G  R  S  T  K  E  C  V  A  R  F  V  K  L  P  F  G  E  Q  F  M  G  P  P  E  S  A  E  M  D  S  E  S  R  S  E  T  M </second_frame>
            <third_frame>   F  H  L  P  N  A  L  R  L  H  L  S  K  F  *  R  F  N  M  P  E  S  G  E  I  K  S  Q  A  A  K  S  D  P  Q  T  T  S  P  P  P  S  Q  Q  P  Q  T  A  A  L  P  L  K  R  P  Q  Q  L  E  S  S  P  N  P  T  T  P  S  V  T  D  P  K  D  V  T  P  T  T  I  S  S  R  I  T  E  P  D  F  I  Y  I  P  S  Y  S   : R  W  F  S  W  N  S  I  H  E  C  E  V  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  K  L  L  C  I  M  A  M  I  G  R  R  L  L  S  M  L  V  A  E  A  L  R  N  V  W  L  D  L  S  S  F  L  S  V  S  S  L  W  A  L  L  N  L  Q  K  W  I  V  N  P  G  L  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2226" stop="1983"/>
                    <exon start="1871" stop="1447"/>
                    <exon start="977" stop="813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFNMPESGEIKSQAAKSDPQTTSPPPSQQPQTAALPLKRPQQLESSPNPTTPSVTDPKDVTPTTISSRITEPDFIYIPSYSRWFSWNSIHECEVRFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKKLLCIMAMIGRRLLSMLVAEALRNVWLDLSSFLSVSSLWALLNLQKWIVNPGLKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8226" PGL_stop="2778"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8226" e_stop="7677"/>
            <exon e_start="7369" e_stop="7246"/>
            <exon e_start="5871" e_stop="5742"/>
            <exon e_start="5246" e_stop="5210"/>
            <exon e_start="5078" e_stop="4393"/>
            <exon e_start="4283" e_stop="4188"/>
            <exon e_start="3222" e_stop="2778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="0.924"/>
          <exon-intron don_prob="0.425" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.573" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.455" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="8226" e_stop="7677" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7369" e_stop="7246" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.425" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5871" e_stop="5742" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.573" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5246" e_stop="5210" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.455">
            <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5078" e_stop="4393" e_length="686"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4283" e_stop="4188" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="3222" e_stop="2778" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8226" stop="7712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7692" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5787" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4892" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="3089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4892" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="3090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4891" stop="4393"/>
              <exon start="4283" stop="4254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4563" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="2778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4549" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="2798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTGACCTACTCTCTCTTTTTTTCCACCCACAGTTCTAGGGTTTCCTATTATTATTTTTTTCTCTCTTCATCCTTTGTGTTCCGCTCTTCCTCTTCATCTTCCTGCTGCTGCTCCTATAGCTCTCTCCTTAAACATCCTTTTCTTTTTTTGTGAATACATGTACCATCTTTTCTGCCATTTTAGGGGGGTTTTCTGTGTATAAGAGGTCGGGTTTTCACTGGATCAACTTTAGTATAACGTGAATAGTTTCTGTTTTCTGGTCTACTTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT : GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG : GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG : GTATGCGACATATGGTACGGATTACGTTTACCCTCAG : GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG : GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG : GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATTATCACC</gDNA_template>
            <first_frame> A  F  *  P  T  L  S  F  F  P  P  T  V  L  G  F  P  I  I  I  F  F  S  L  H  P  L  C  S  A  L  P  L  H  L  P  A  A  A  P  I  A  L  S  L  N  I  L  F  F  F  C  E  Y  M  Y  H  L  F  C  H  F  R  G  V  F  C  V  *  E  V  G  F  S  L  D  Q  L  *  Y  N  V  N  S  F  C  F  L  V  Y  L  L  L  L  Y  L  L  K  S  N  W  I  V  D  Y  G  V  S  T  A  A  T  S  S  R  F  R  F  L  C  C  W  Q  W  G  S  I  L  *  F  S  F  W  G  H  H  L  H  *  G  L  C  W  R  S  C  L  G  N  S  E  *  H  P  Q  T  I  L  *  A  V  W  *  N  P  R  G  C  C  H  H  *  *  K  Y  W  P  I  Q  R  L  W  L   : C  D  F  P  G  P  *  V  Y  K  E  G  M  C  *  S  C  S  N  Y  R  W  K  T  S  K  L  *  F  G  F  V  R  A  T  S  S  F  C  A  I  W :   T  S  E  V  T  D  S  I  S  S  R  A  T  S  C  S  G  C  L  C  W  K  F  W  L  P  A  T  G  F  L  W  L  P  A  R  L  D  V  F  S  L  W  :  V  C  D  I  W  Y  G  L  R  L  P  S   : G  C  L  Q  S  L  W  R  S  T  V  P  S  Y  I  W  C  T  W  N  C  *  C  N  N  V  S  L  R  P  A  K  S  G  C  S  W  K  S  Q  L  Y  D  I  A  G  L  C  S  A  R  T  S  D  S  S  V  W  W  A  R  C  Q  C  N  D  S  F  I  H  S  N  Y  S  S  T  I  S  N  R  Q  I  S  F  I  C  I  L  Y  M  H  A  W  *  P  C  I  S  S  Y  H  *  H  *  S  A  F  Q  V  Y  Q  D  V  *  H  L  E  K  S  S  P  P  Q  R  *  G  *  G  A  A  Y  T  P  P  I  P  D  P  T  C  G  I  T  L  G  M  L  L  L  Y  D  M  I  D  I  *  K  T  C  W  N  L  I  Y  F  C  S  L  S  S  K  S  Y  I  R  L  Q  V  *  S  *  Q  Y  H  Y  A  T  V  F  L  F  L  G  V  G  A  P  V  T  P  Q  P  Q  F  I  L  P  T  H  S  P  Q  F  M  Q  G  S  G  S  D  Q  N  A  G  *  D  F  I  K  :  V  L  D  C  S  R  T  N  S  S  S  I  A  T  *  E  A  G  F  *  S  S  L  A  N  Y  S  L  C  I  L  E  :  V  I  K  S  H  T  H  H  E  S  S  M  S  E  S  L  L  M  I  E  *  G  N  M  E  V  A  D  C  T  S  F  N  I  M  Y  L  G  P  C  I  L  L  V  S  G  S  L  A  E  S  H  A  F  E  G  Y  W  N  R  F  L  A  P  S  L  *  Q  *  T  L  *  K  I  H  I  R  I  N  L  *  F  S  Y  S  Q  K  L  P  E  Y  A  F  G  C  V  D  S  H  C  L  A  C  W  C  T  M  H  R  V  *  K  S  C  A  *  K  T  N  K  L  *  S  *  T  *  D  S  F  C  N  L  D  V  L  L  M  I  L  E  A  R  S  F  S  Y  Y  H  </first_frame>
            <second_frame>  P  F  D  L  L  S  L  F  F  H  P  Q  F  *  G  F  L  L  L  F  F  S  L  F  I  L  C  V  P  L  F  L  F  I  F  L  L  L  L  L  *  L  S  P  *  T  S  F  S  F  F  V  N  T  C  T  I  F  S  A  I  L  G  G  F  S  V  Y  K  R  S  G  F  H  W  I  N  F  S  I  T  *  I  V  S  V  F  W  S  T  Y  F  S  C  I  Y  L  N  Q  I  G  *  W  I  M  A  Y  Q  Q  Q  P  P  A  Q  G  S  G  S  S  A  A  G  S  G  V  P  F  F  N  S  P  F  G  D  T  T  F  T  K  V  F  V  G  G  L  A  W  E  T  Q  S  D  T  L  R  R  F  F  E  Q  F  G  E  I  L  E  A  V  V  I  T  D  K  N  T  G  R  S  K  G  Y  G  F  :  V  T  F  R  D  P  E  S  T  R  R  A  C  A  D  P  A  P  I  I  D  G  R  R  A  N  C  N  L  A  S  L  G  R  P  R  P  S  V  Q  F   : G  R  L  R  S  P  T  P  F  P  A  G  L  P  A  A  R  G  A  Y  A  G  S  F  G  Y  Q  Q  P  V  S  Y  G  Y  Q  Q  G  L  M  Y  S  P  Y  G :   Y  A  T  Y  G  T  D  Y  V  Y  P  Q  :  G  V  Y  N  P  Y  G  G  Q  Q  Y  L  P  I  Y  G  V  P  G  T  V  N  A  T  M  Y  P  Y  G  Q  L  S  Q  A  V  P  G  S  H  S  Y  T  T  L  Q  G  Y  A  V  P  G  H  Q  I  L  Q  F  G  G  P  G  V  N  A  M  T  A  S  S  I  P  T  I  Q  A  P  Y  Q  T  G  R  F  L  L  F  V  S  Y  I  C  M  H  G  S  L  A  Y  H  L  I  I  D  I  N  L  H  S  K  F  I  K  M  S  D  I  *  K  K  V  V  P  H  K  D  R  G  K  G  L  H  I  P  H  P  S  Q  T  P  L  V  V  S  H  W  V  C  C  C  C  M  T  *  L  T  S  R  K  H  A  G  T  S  S  T  S  V  A  S  V  P  S  L  T  *  D  C  K  Y  E  V  D  S  I  I  M  Q  L  F  F  Y  F  *  V  S  E  R  L  L  H  H  S  H  S  L  Y  Y  L  L  I  L  L  N  L  C  K  V  A  V  L  T  K  M  Q  G  E  I  L  S  R :   Y  *  I  A  A  G  L  T  A  A  V  L  L  L  E  R  Q  A  F  N  L  A  L  Q  I  I  H  F  A  F  *  R :   L  *  K  V  I  P  T  M  R  A  Q  C  L  S  R  S  *  *  L  S  E  E  T  W  K  L  R  I  A  L  P  S  T  S  C  I  *  A  L  A  F  C  W  F  Q  D  H  W  Q  R  V  M  H  L  R  D  T  G  I  G  F  W  L  P  P  C  S  N  K  L  C  K  K  F  T  S  E  S  T  C  D  S  V  I  V  K  N  S  Q  N  M  L  L  G  V  *  I  V  I  V  L  R  A  G  A  P  C  T  V  F  K  S  L  V  H  K  K  Q  T  S  F  S  L  K  L  E  I  H  S  V  I  W  M  F  Y  *  *  F  L  K  Q  E  A  S  V  I  I  T </second_frame>
            <third_frame>   L  L  T  Y  S  L  F  F  S  T  H  S  S  R  V  S  Y  Y  Y  F  F  L  S  S  S  F  V  F  R  S  S  S  S  S  S  C  C  C  S  Y  S  S  L  L  K  H  P  F  L  F  L  *  I  H  V  P  S  F  L  P  F  *  G  G  F  L  C  I  R  G  R  V  F  T  G  S  T  L  V  *  R  E  *  F  L  F  S  G  L  L  T  S  P  V  S  T  *  I  K  L  D  S  G  L  W  R  I  N  S  S  H  Q  L  K  V  Q  V  P  L  L  L  A  V  G  F  H  S  L  I  L  L  L  G  T  P  P  S  L  R  S  L  L  E  V  L  L  G  K  L  R  V  T  P  S  D  D  S  L  S  S  L  V  K  S  S  R  L  L  S  S  L  I  K  I  L  A  D  P  K  A  M  A  L :   *  L  S  G  T  L  S  L  Q  G  G  H  V  L  I  L  L  Q  L  S  M  E  D  E  Q  I  V  I  W  L  R  *  G  D  L  V  L  L  C  N  L  :  D  V  *  G  H  R  L  H  F  Q  Q  G  Y  Q  L  L  G  V  L  M  L  E  V  L  A  T  S  N  R  F  L  M  A  T  S  K  A  *  C  I  L  L  M   : G  M  R  H  M  V  R  I  T  F  T  L  R :   V  F  T  I  L  M  E  V  N  S  T  F  L  Y  M  V  Y  L  E  L  L  M  Q  Q  C  I  L  T  A  S  *  V  R  L  F  L  E  V  T  V  I  R  H  C  R  V  M  Q  C  Q  D  I  R  F  F  S  L  V  G  P  V  S  M  Q  *  Q  L  H  P  F  Q  L  F  K  H  H  I  K  Q  A  D  F  F  Y  L  Y  L  I  Y  A  C  M  V  A  L  H  I  I  L  S  L  T  L  I  C  I  P  S  L  S  R  C  L  T  S  R  K  K  *  S  P  T  K  I  G  V  R  G  C  I  Y  P  T  H  P  R  P  H  L  W  Y  H  T  G  Y  V  V  A  V  *  H  D  *  H  L  E  N  M  L  E  P  H  L  L  L  *  P  Q  F  Q  V  L  H  K  I  A  S  M  K  L  T  V  S  L  C  N  C  F  F  I  F  R  C  R  S  A  C  Y  T  T  A  T  V  Y  T  T  Y  S  F  S  S  I  Y  A  R  *  R  F  *  P  K  C  R  V  R  F  Y  Q   : G  T  R  L  Q  Q  D  *  Q  Q  Q  Y  C  Y  L  R  G  R  L  L  I  *  P  C  K  L  F  T  L  H  S  R   : G  Y  K  K  S  Y  P  P  *  E  L  N  V  *  V  A  P  D  D  *  V  R  K  H  G  S  C  G  L  H  F  L  Q  H  H  V  S  R  P  L  H  S  A  G  F  R  I  T  G  R  E  S  C  I  *  G  I  L  E  *  V  S  G  S  L  L  V  A  I  N  F  V  K  N  S  H  Q  N  Q  P  V  I  Q  L  *  S  K  T  P  R  I  C  F  W  V  C  R  *  S  L  S  C  V  L  V  H  H  A  P  C  L  K  V  L  C  I  K  N  K  Q  A  L  V  L  N  L  R  F  I  L  *  F  G  C  F  I  D  D  S  *  S  K  K  L  Q  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7919" stop="7677"/>
                    <exon start="7369" stop="7246"/>
                    <exon start="5871" stop="5742"/>
                    <exon start="5246" stop="5210"/>
                    <exon start="5078" stop="4731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIMAYQQQPPAQGSGSSAAGSGVPFFNSPFGDTTFTKVFVGGLAWETQSDTLRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESTRRACADPAPIIDGRRANCNLASLGRPRPSVQFGRLRSPTPFPAGLPAARGAYAGSFGYQQPVSYGYQQGLMYSPYGYATYGTDYVYPQGVYNPYGGQQYLPIYGVPGTVNATMYPYGQLSQAVPGSHSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTGRFLLFVSYICMHGSLAYHLIIDINLHSKFIKMSDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8217" stop="8020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTLSFFPPTVLGFPIIIFFSLHPLCSALPLHLPAAAPIALSLNILFFFCEYMYHLFCHFRGVFCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="8226" e_stop="7677"/>
            <exon e_start="7369" e_stop="7246"/>
            <exon e_start="5871" e_stop="5742"/>
            <exon e_start="5246" e_stop="5210"/>
            <exon e_start="5078" e_stop="4841"/>
            <exon e_start="4502" e_stop="4393"/>
            <exon e_start="4283" e_stop="4188"/>
            <exon e_start="3222" e_stop="2784"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="0.924"/>
          <exon-intron don_prob="0.425" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.573" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.455" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="8226" e_stop="7677" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7369" e_stop="7246" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.425" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5871" e_stop="5742" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.573" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5246" e_stop="5210" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.455">
            <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5078" e_stop="4841" e_length="238"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4840" i_stop="4503" i_length="338"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4502" e_stop="4393" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4283" e_stop="4188" e_length="96"/>
          </exon>
          <intron i_serial="7" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3222" e_stop="2784" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8226" stop="7712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7692" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7296" stop="7246"/>
              <exon start="5871" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4841"/>
              <exon start="4502" stop="4393"/>
              <exon start="4283" stop="4192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7295" stop="7246"/>
              <exon start="5871" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4841"/>
              <exon start="4502" stop="4440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5779" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4841"/>
              <exon start="4502" stop="4393"/>
              <exon start="4283" stop="4213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261090" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5018" stop="4841"/>
              <exon start="4502" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="3049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4923" stop="4841"/>
              <exon start="4502" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="2784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554307" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTGACCTACTCTCTCTTTTTTTCCACCCACAGTTCTAGGGTTTCCTATTATTATTTTTTTCTCTCTTCATCCTTTGTGTTCCGCTCTTCCTCTTCATCTTCCTGCTGCTGCTCCTATAGCTCTCTCCTTAAACATCCTTTTCTTTTTTTGTGAATACATGTACCATCTTTTCTGCCATTTTAGGGGGGTTTTCTGTGTATAAGAGGTCGGGTTTTCACTGGATCAACTTTAGTATAACGTGAATAGTTTCTGTTTTCTGGTCTACTTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT : GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG : GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG : GTATGCGACATATGGTACGGATTACGTTTACCCTCAG : GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAG : GTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG : GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG : GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATT</gDNA_template>
            <first_frame> A  F  *  P  T  L  S  F  F  P  P  T  V  L  G  F  P  I  I  I  F  F  S  L  H  P  L  C  S  A  L  P  L  H  L  P  A  A  A  P  I  A  L  S  L  N  I  L  F  F  F  C  E  Y  M  Y  H  L  F  C  H  F  R  G  V  F  C  V  *  E  V  G  F  S  L  D  Q  L  *  Y  N  V  N  S  F  C  F  L  V  Y  L  L  L  L  Y  L  L  K  S  N  W  I  V  D  Y  G  V  S  T  A  A  T  S  S  R  F  R  F  L  C  C  W  Q  W  G  S  I  L  *  F  S  F  W  G  H  H  L  H  *  G  L  C  W  R  S  C  L  G  N  S  E  *  H  P  Q  T  I  L  *  A  V  W  *  N  P  R  G  C  C  H  H  *  *  K  Y  W  P  I  Q  R  L  W  L   : C  D  F  P  G  P  *  V  Y  K  E  G  M  C  *  S  C  S  N  Y  R  W  K  T  S  K  L  *  F  G  F  V  R  A  T  S  S  F  C  A  I  W :   T  S  E  V  T  D  S  I  S  S  R  A  T  S  C  S  G  C  L  C  W  K  F  W  L  P  A  T  G  F  L  W  L  P  A  R  L  D  V  F  S  L  W  :  V  C  D  I  W  Y  G  L  R  L  P  S   : G  C  L  Q  S  L  W  R  S  T  V  P  S  Y  I  W  C  T  W  N  C  *  C  N  N  V  S  L  R  P  A  K  S  G  C  S  W  K  S  Q  L  Y  D  I  A  G  L  C  S  A  R  T  S  D  S  S  V  W  W  A  R  C  Q  C  N  D  S  F  I  H  S  N  Y  S  S  T  I  S  N  R :   C  R  S  A  C  Y  T  T  A  T  V  Y  T  T  Y  S  F  S  S  I  Y  A  R  *  R  F  *  P  K  C  R  V  R  F  Y  Q   : G  T  R  L  Q  Q  D  *  Q  Q  Q  Y  C  Y  L  R  G  R  L  L  I  *  P  C  K  L  F  T  L  H  S  R   : G  Y  K  K  S  Y  P  P  *  E  L  N  V  *  V  A  P  D  D  *  V  R  K  H  G  S  C  G  L  H  F  L  Q  H  H  V  S  R  P  L  H  S  A  G  F  R  I  T  G  R  E  S  C  I  *  G  I  L  E  *  V  S  G  S  L  L  V  A  I  N  F  V  K  N  S  H  Q  N  Q  P  V  I  Q  L  *  S  K  T  P  R  I  C  F  W  V  C  R  *  S  L  S  C  V  L  V  H  H  A  P  C  L  K  V  L  C  I  K  N  K  Q  A  L  V  L  N  L  R  F  I  L  *  F  G  C  F  I  D  D  S  *  S  K  K  L  Q  L   </first_frame>
            <second_frame>  P  F  D  L  L  S  L  F  F  H  P  Q  F  *  G  F  L  L  L  F  F  S  L  F  I  L  C  V  P  L  F  L  F  I  F  L  L  L  L  L  *  L  S  P  *  T  S  F  S  F  F  V  N  T  C  T  I  F  S  A  I  L  G  G  F  S  V  Y  K  R  S  G  F  H  W  I  N  F  S  I  T  *  I  V  S  V  F  W  S  T  Y  F  S  C  I  Y  L  N  Q  I  G  *  W  I  M  A  Y  Q  Q  Q  P  P  A  Q  G  S  G  S  S  A  A  G  S  G  V  P  F  F  N  S  P  F  G  D  T  T  F  T  K  V  F  V  G  G  L  A  W  E  T  Q  S  D  T  L  R  R  F  F  E  Q  F  G  E  I  L  E  A  V  V  I  T  D  K  N  T  G  R  S  K  G  Y  G  F  :  V  T  F  R  D  P  E  S  T  R  R  A  C  A  D  P  A  P  I  I  D  G  R  R  A  N  C  N  L  A  S  L  G  R  P  R  P  S  V  Q  F   : G  R  L  R  S  P  T  P  F  P  A  G  L  P  A  A  R  G  A  Y  A  G  S  F  G  Y  Q  Q  P  V  S  Y  G  Y  Q  Q  G  L  M  Y  S  P  Y  G :   Y  A  T  Y  G  T  D  Y  V  Y  P  Q  :  G  V  Y  N  P  Y  G  G  Q  Q  Y  L  P  I  Y  G  V  P  G  T  V  N  A  T  M  Y  P  Y  G  Q  L  S  Q  A  V  P  G  S  H  S  Y  T  T  L  Q  G  Y  A  V  P  G  H  Q  I  L  Q  F  G  G  P  G  V  N  A  M  T  A  S  S  I  P  T  I  Q  A  P  Y  Q  T   : G  V  G  A  P  V  T  P  Q  P  Q  F  I  L  P  T  H  S  P  Q  F  M  Q  G  S  G  S  D  Q  N  A  G  *  D  F  I  K  :  V  L  D  C  S  R  T  N  S  S  S  I  A  T  *  E  A  G  F  *  S  S  L  A  N  Y  S  L  C  I  L  E  :  V  I  K  S  H  T  H  H  E  S  S  M  S  E  S  L  L  M  I  E  *  G  N  M  E  V  A  D  C  T  S  F  N  I  M  Y  L  G  P  C  I  L  L  V  S  G  S  L  A  E  S  H  A  F  E  G  Y  W  N  R  F  L  A  P  S  L  *  Q  *  T  L  *  K  I  H  I  R  I  N  L  *  F  S  Y  S  Q  K  L  P  E  Y  A  F  G  C  V  D  S  H  C  L  A  C  W  C  T  M  H  R  V  *  K  S  C  A  *  K  T  N  K  L  *  S  *  T  *  D  S  F  C  N  L  D  V  L  L  M  I  L  E  A  R  S  F  S  Y  </second_frame>
            <third_frame>   L  L  T  Y  S  L  F  F  S  T  H  S  S  R  V  S  Y  Y  Y  F  F  L  S  S  S  F  V  F  R  S  S  S  S  S  S  C  C  C  S  Y  S  S  L  L  K  H  P  F  L  F  L  *  I  H  V  P  S  F  L  P  F  *  G  G  F  L  C  I  R  G  R  V  F  T  G  S  T  L  V  *  R  E  *  F  L  F  S  G  L  L  T  S  P  V  S  T  *  I  K  L  D  S  G  L  W  R  I  N  S  S  H  Q  L  K  V  Q  V  P  L  L  L  A  V  G  F  H  S  L  I  L  L  L  G  T  P  P  S  L  R  S  L  L  E  V  L  L  G  K  L  R  V  T  P  S  D  D  S  L  S  S  L  V  K  S  S  R  L  L  S  S  L  I  K  I  L  A  D  P  K  A  M  A  L :   *  L  S  G  T  L  S  L  Q  G  G  H  V  L  I  L  L  Q  L  S  M  E  D  E  Q  I  V  I  W  L  R  *  G  D  L  V  L  L  C  N  L  :  D  V  *  G  H  R  L  H  F  Q  Q  G  Y  Q  L  L  G  V  L  M  L  E  V  L  A  T  S  N  R  F  L  M  A  T  S  K  A  *  C  I  L  L  M   : G  M  R  H  M  V  R  I  T  F  T  L  R :   V  F  T  I  L  M  E  V  N  S  T  F  L  Y  M  V  Y  L  E  L  L  M  Q  Q  C  I  L  T  A  S  *  V  R  L  F  L  E  V  T  V  I  R  H  C  R  V  M  Q  C  Q  D  I  R  F  F  S  L  V  G  P  V  S  M  Q  *  Q  L  H  P  F  Q  L  F  K  H  H  I  K  Q  :  V  S  E  R  L  L  H  H  S  H  S  L  Y  Y  L  L  I  L  L  N  L  C  K  V  A  V  L  T  K  M  Q  G  E  I  L  S  R :   Y  *  I  A  A  G  L  T  A  A  V  L  L  L  E  R  Q  A  F  N  L  A  L  Q  I  I  H  F  A  F  *  R :   L  *  K  V  I  P  T  M  R  A  Q  C  L  S  R  S  *  *  L  S  E  E  T  W  K  L  R  I  A  L  P  S  T  S  C  I  *  A  L  A  F  C  W  F  Q  D  H  W  Q  R  V  M  H  L  R  D  T  G  I  G  F  W  L  P  P  C  S  N  K  L  C  K  K  F  T  S  E  S  T  C  D  S  V  I  V  K  N  S  Q  N  M  L  L  G  V  *  I  V  I  V  L  R  A  G  A  P  C  T  V  F  K  S  L  V  H  K  K  Q  T  S  F  S  L  K  L  E  I  H  S  V  I  W  M  F  Y  *  *  F  L  K  Q  E  A  S  V  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7919" stop="7677"/>
                    <exon start="7369" stop="7246"/>
                    <exon start="5871" stop="5742"/>
                    <exon start="5246" stop="5210"/>
                    <exon start="5078" stop="4841"/>
                    <exon start="4502" stop="4405"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIMAYQQQPPAQGSGSSAAGSGVPFFNSPFGDTTFTKVFVGGLAWETQSDTLRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESTRRACADPAPIIDGRRANCNLASLGRPRPSVQFGRLRSPTPFPAGLPAARGAYAGSFGYQQPVSYGYQQGLMYSPYGYATYGTDYVYPQGVYNPYGGQQYLPIYGVPGTVNATMYPYGQLSQAVPGSHSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTGVGAPVTPQPQFILPTHSPQFMQGSGSDQNAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8217" stop="8020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTLSFFPPTVLGFPIIIFFSLHPLCSALPLHLPAAAPIALSLNILFFFCEYMYHLFCHFRGVFCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="8226" e_stop="7677"/>
            <exon e_start="7369" e_stop="7246"/>
            <exon e_start="5871" e_stop="5742"/>
            <exon e_start="5246" e_stop="5210"/>
            <exon e_start="5078" e_stop="4393"/>
            <exon e_start="4283" e_stop="4011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.984" e_score="0.924"/>
          <exon-intron don_prob="0.425" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.573" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.455" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.998"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="8226" e_stop="7677" e_length="550"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.984">
            <gDNA_intron_boundary i_start="7676" i_stop="7370" i_length="307"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7369" e_stop="7246" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.425" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7245" i_stop="5872" i_length="1374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5871" e_stop="5742" e_length="130"/>
          </exon>
          <intron i_serial="3" don_prob="0.573" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5741" i_stop="5247" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5246" e_stop="5210" e_length="37"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.455">
            <gDNA_intron_boundary i_start="5209" i_stop="5079" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="5078" e_stop="4393" e_length="686"/>
          </exon>
          <intron i_serial="5" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="0.934">
            <gDNA_exon_boundary e_start="4283" e_stop="4011" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8226" stop="7712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7974" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7956" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7692" stop="7677"/>
              <exon start="7369" stop="7246"/>
              <exon start="5871" stop="5742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5787" stop="5742"/>
              <exon start="5246" stop="5210"/>
              <exon start="5078" stop="4710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4891" stop="4393"/>
              <exon start="4283" stop="4254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4762" stop="4393"/>
              <exon start="4283" stop="4011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573975" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCTTTTGACCTACTCTCTCTTTTTTTCCACCCACAGTTCTAGGGTTTCCTATTATTATTTTTTTCTCTCTTCATCCTTTGTGTTCCGCTCTTCCTCTTCATCTTCCTGCTGCTGCTCCTATAGCTCTCTCCTTAAACATCCTTTTCTTTTTTTGTGAATACATGTACCATCTTTTCTGCCATTTTAGGGGGGTTTTCTGTGTATAAGAGGTCGGGTTTTCACTGGATCAACTTTAGTATAACGTGAATAGTTTCTGTTTTCTGGTCTACTTACTTCTCCTGTATCTACTTAAATCAAATTGGATAGTGGATTATGGCGTATCAACAGCAGCCACCAGCTCAAGGTTCAGGTTCCTCTGCTGCTGGCAGTGGGGTTCCATTCTTTAATTCTCCTTTTGGGGACACCACCTTCACTAAGGTCTTTGTTGGAGGTCTTGCTTGGGAAACTCAGAGTGACACCCTCAGACGATTCTTTGAGCAGTTTGGTGAAATCCTCGAGGCTGTTGTCATCACTGATAAAAATACTGGCCGATCCAAAGGCTATGGCTTT : GTGACTTTCCGGGACCCTGAGTCTACAAGGAGGGCATGTGCTGATCCTGCTCCAATTATCGATGGAAGACGAGCAAATTGTAATTTGGCTTCGTTAGGGCGACCTCGTCCTTCTGTGCAATTTG : GACGTCTGAGGTCACCGACTCCATTTCCAGCAGGGCTACCAGCTGCTCGGGGTGCTTATGCTGGAAGTTTTGGCTACCAGCAACCGGTTTCTTATGGCTACCAGCAAGGCTTGATGTATTCTCCTTATGG : GTATGCGACATATGGTACGGATTACGTTTACCCTCAG : GGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG : GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAGGTACTAGATTTGGCTTTGTTTTAACCTCTTTTGTTTCCCTTGAGTTTGTCCGTGCTCCCCTACCCCCCTTCTGCATCTTTATCGATTATTCTTTTTTTTTTGGGTGTGTATATGTGTGGTGGCGGTGGTTAAGTTCAATTGCTTGTATGAGGTAATATGAGGACCAAAACAGAAAGC</gDNA_template>
            <first_frame> A  F  *  P  T  L  S  F  F  P  P  T  V  L  G  F  P  I  I  I  F  F  S  L  H  P  L  C  S  A  L  P  L  H  L  P  A  A  A  P  I  A  L  S  L  N  I  L  F  F  F  C  E  Y  M  Y  H  L  F  C  H  F  R  G  V  F  C  V  *  E  V  G  F  S  L  D  Q  L  *  Y  N  V  N  S  F  C  F  L  V  Y  L  L  L  L  Y  L  L  K  S  N  W  I  V  D  Y  G  V  S  T  A  A  T  S  S  R  F  R  F  L  C  C  W  Q  W  G  S  I  L  *  F  S  F  W  G  H  H  L  H  *  G  L  C  W  R  S  C  L  G  N  S  E  *  H  P  Q  T  I  L  *  A  V  W  *  N  P  R  G  C  C  H  H  *  *  K  Y  W  P  I  Q  R  L  W  L   : C  D  F  P  G  P  *  V  Y  K  E  G  M  C  *  S  C  S  N  Y  R  W  K  T  S  K  L  *  F  G  F  V  R  A  T  S  S  F  C  A  I  W :   T  S  E  V  T  D  S  I  S  S  R  A  T  S  C  S  G  C  L  C  W  K  F  W  L  P  A  T  G  F  L  W  L  P  A  R  L  D  V  F  S  L  W  :  V  C  D  I  W  Y  G  L  R  L  P  S   : G  C  L  Q  S  L  W  R  S  T  V  P  S  Y  I  W  C  T  W  N  C  *  C  N  N  V  S  L  R  P  A  K  S  G  C  S  W  K  S  Q  L  Y  D  I  A  G  L  C  S  A  R  T  S  D  S  S  V  W  W  A  R  C  Q  C  N  D  S  F  I  H  S  N  Y  S  S  T  I  S  N  R  Q  I  S  F  I  C  I  L  Y  M  H  A  W  *  P  C  I  S  S  Y  H  *  H  *  S  A  F  Q  V  Y  Q  D  V  *  H  L  E  K  S  S  P  P  Q  R  *  G  *  G  A  A  Y  T  P  P  I  P  D  P  T  C  G  I  T  L  G  M  L  L  L  Y  D  M  I  D  I  *  K  T  C  W  N  L  I  Y  F  C  S  L  S  S  K  S  Y  I  R  L  Q  V  *  S  *  Q  Y  H  Y  A  T  V  F  L  F  L  G  V  G  A  P  V  T  P  Q  P  Q  F  I  L  P  T  H  S  P  Q  F  M  Q  G  S  G  S  D  Q  N  A  G  *  D  F  I  K  :  V  L  D  C  S  R  T  N  S  S  S  I  A  T  *  E  A  G  F  *  S  S  L  A  N  Y  S  L  C  I  L  E  V  L  D  L  A  L  F  *  P  L  L  F  P  L  S  L  S  V  L  P  Y  P  P  S  A  S  L  S  I  I  L  F  F  L  G  V  Y  M  C  G  G  G  G  *  V  Q  L  L  V  *  G  N  M  R  T  K  T  E  S </first_frame>
            <second_frame>  P  F  D  L  L  S  L  F  F  H  P  Q  F  *  G  F  L  L  L  F  F  S  L  F  I  L  C  V  P  L  F  L  F  I  F  L  L  L  L  L  *  L  S  P  *  T  S  F  S  F  F  V  N  T  C  T  I  F  S  A  I  L  G  G  F  S  V  Y  K  R  S  G  F  H  W  I  N  F  S  I  T  *  I  V  S  V  F  W  S  T  Y  F  S  C  I  Y  L  N  Q  I  G  *  W  I  M  A  Y  Q  Q  Q  P  P  A  Q  G  S  G  S  S  A  A  G  S  G  V  P  F  F  N  S  P  F  G  D  T  T  F  T  K  V  F  V  G  G  L  A  W  E  T  Q  S  D  T  L  R  R  F  F  E  Q  F  G  E  I  L  E  A  V  V  I  T  D  K  N  T  G  R  S  K  G  Y  G  F  :  V  T  F  R  D  P  E  S  T  R  R  A  C  A  D  P  A  P  I  I  D  G  R  R  A  N  C  N  L  A  S  L  G  R  P  R  P  S  V  Q  F   : G  R  L  R  S  P  T  P  F  P  A  G  L  P  A  A  R  G  A  Y  A  G  S  F  G  Y  Q  Q  P  V  S  Y  G  Y  Q  Q  G  L  M  Y  S  P  Y  G :   Y  A  T  Y  G  T  D  Y  V  Y  P  Q  :  G  V  Y  N  P  Y  G  G  Q  Q  Y  L  P  I  Y  G  V  P  G  T  V  N  A  T  M  Y  P  Y  G  Q  L  S  Q  A  V  P  G  S  H  S  Y  T  T  L  Q  G  Y  A  V  P  G  H  Q  I  L  Q  F  G  G  P  G  V  N  A  M  T  A  S  S  I  P  T  I  Q  A  P  Y  Q  T  G  R  F  L  L  F  V  S  Y  I  C  M  H  G  S  L  A  Y  H  L  I  I  D  I  N  L  H  S  K  F  I  K  M  S  D  I  *  K  K  V  V  P  H  K  D  R  G  K  G  L  H  I  P  H  P  S  Q  T  P  L  V  V  S  H  W  V  C  C  C  C  M  T  *  L  T  S  R  K  H  A  G  T  S  S  T  S  V  A  S  V  P  S  L  T  *  D  C  K  Y  E  V  D  S  I  I  M  Q  L  F  F  Y  F  *  V  S  E  R  L  L  H  H  S  H  S  L  Y  Y  L  L  I  L  L  N  L  C  K  V  A  V  L  T  K  M  Q  G  E  I  L  S  R :   Y  *  I  A  A  G  L  T  A  A  V  L  L  L  E  R  Q  A  F  N  L  A  L  Q  I  I  H  F  A  F  *  R  Y  *  I  W  L  C  F  N  L  F  C  F  P  *  V  C  P  C  S  P  T  P  L  L  H  L  Y  R  L  F  F  F  F  W  V  C  I  C  V  V  A  V  V  K  F  N  C  L  Y  E  V  I  *  G  P  K  Q  K   </second_frame>
            <third_frame>   L  L  T  Y  S  L  F  F  S  T  H  S  S  R  V  S  Y  Y  Y  F  F  L  S  S  S  F  V  F  R  S  S  S  S  S  S  C  C  C  S  Y  S  S  L  L  K  H  P  F  L  F  L  *  I  H  V  P  S  F  L  P  F  *  G  G  F  L  C  I  R  G  R  V  F  T  G  S  T  L  V  *  R  E  *  F  L  F  S  G  L  L  T  S  P  V  S  T  *  I  K  L  D  S  G  L  W  R  I  N  S  S  H  Q  L  K  V  Q  V  P  L  L  L  A  V  G  F  H  S  L  I  L  L  L  G  T  P  P  S  L  R  S  L  L  E  V  L  L  G  K  L  R  V  T  P  S  D  D  S  L  S  S  L  V  K  S  S  R  L  L  S  S  L  I  K  I  L  A  D  P  K  A  M  A  L :   *  L  S  G  T  L  S  L  Q  G  G  H  V  L  I  L  L  Q  L  S  M  E  D  E  Q  I  V  I  W  L  R  *  G  D  L  V  L  L  C  N  L  :  D  V  *  G  H  R  L  H  F  Q  Q  G  Y  Q  L  L  G  V  L  M  L  E  V  L  A  T  S  N  R  F  L  M  A  T  S  K  A  *  C  I  L  L  M   : G  M  R  H  M  V  R  I  T  F  T  L  R :   V  F  T  I  L  M  E  V  N  S  T  F  L  Y  M  V  Y  L  E  L  L  M  Q  Q  C  I  L  T  A  S  *  V  R  L  F  L  E  V  T  V  I  R  H  C  R  V  M  Q  C  Q  D  I  R  F  F  S  L  V  G  P  V  S  M  Q  *  Q  L  H  P  F  Q  L  F  K  H  H  I  K  Q  A  D  F  F  Y  L  Y  L  I  Y  A  C  M  V  A  L  H  I  I  L  S  L  T  L  I  C  I  P  S  L  S  R  C  L  T  S  R  K  K  *  S  P  T  K  I  G  V  R  G  C  I  Y  P  T  H  P  R  P  H  L  W  Y  H  T  G  Y  V  V  A  V  *  H  D  *  H  L  E  N  M  L  E  P  H  L  L  L  *  P  Q  F  Q  V  L  H  K  I  A  S  M  K  L  T  V  S  L  C  N  C  F  F  I  F  R  C  R  S  A  C  Y  T  T  A  T  V  Y  T  T  Y  S  F  S  S  I  Y  A  R  *  R  F  *  P  K  C  R  V  R  F  Y  Q   : G  T  R  L  Q  Q  D  *  Q  Q  Q  Y  C  Y  L  R  G  R  L  L  I  *  P  C  K  L  F  T  L  H  S  R  G  T  R  F  G  F  V  L  T  S  F  V  S  L  E  F  V  R  A  P  L  P  P  F  C  I  F  I  D  Y  S  F  F  F  G  C  V  Y  V  W  W  R  W  L  S  S  I  A  C  M  R  *  Y  E  D  Q  N  R  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7919" stop="7677"/>
                    <exon start="7369" stop="7246"/>
                    <exon start="5871" stop="5742"/>
                    <exon start="5246" stop="5210"/>
                    <exon start="5078" stop="4731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WIMAYQQQPPAQGSGSSAAGSGVPFFNSPFGDTTFTKVFVGGLAWETQSDTLRRFFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESTRRACADPAPIIDGRRANCNLASLGRPRPSVQFGRLRSPTPFPAGLPAARGAYAGSFGYQQPVSYGYQQGLMYSPYGYATYGTDYVYPQGVYNPYGGQQYLPIYGVPGTVNATMYPYGQLSQAVPGSHSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTGRFLLFVSYICMHGSLAYHLIIDINLHSKFIKMSDI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8217" stop="8020"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTLSFFPPTVLGFPIIIFFSLHPLCSALPLHLPAAAPIALSLNILFFFCEYMYHLFCHFRGVFCV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5235" e_stop="4393"/>
            <exon e_start="4283" e_stop="4188"/>
            <exon e_start="3222" e_stop="2778"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.999" e_score="0.950"/>
          <exon-intron don_prob="0.967" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="5235" e_stop="4393" e_length="843"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4392" i_stop="4284" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4283" e_stop="4188" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.988">
            <gDNA_intron_boundary i_start="4187" i_stop="3223" i_length="965"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="3222" e_stop="2778" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5235" stop="4534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4892" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="3089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4892" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="3090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4891" stop="4393"/>
              <exon start="4283" stop="4254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4563" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="2778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550245" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4549" stop="4393"/>
              <exon start="4283" stop="4188"/>
              <exon start="3222" stop="2798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389686" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGTACGGATTACGTTTACCCTCAGGTTAGTAGCACTGCATAAATGGAGACATTACAATACATCCCATTCTTTTTGCTGCACTTAAAGGTTCAGGTGTCCTTTTGTCTTGACTATGAGGACTCATTTTTGATGCATACTGTAATTTTATCCGATAGGGTGTTTACAATCCTTATGGAGGTCAACAGTACCTTCCTATATATGGTGTACCTGGAACTGTTAATGCAACAATGTATCCTTACGGCCAGCTAAGTCAGGCTGTTCCTGGAAGTCACAGTTATACGACATTGCAGGGTTATGCAGTGCCAGGACATCAGATTCTTCAGTTTGGTGGGCCCGGTGTCAATGCAATGACAGCTTCATCCATTCCAACTATTCAAGCACCATATCAAACAGGCAGATTTCTTTTATTTGTATCTTATATATGCATGCATGGTAGCCTTGCATATCATCTTATCATTGACATTAATCTGCATTCCAAGTTTATCAAGATGTCTGACATCTAGAAAAAAGTAGTCCCCCACAAAGATAGGGGTAAGGGGCTGCATATACCCCACCCATCCCAGACCCCACTTGTGGTATCACACTGGGTATGTTGTTGCTGTATGACATGATTGACATCTAGAAAACATGCTGGAACCTCATCTACTTCTGTAGCCTCAGTTCCAAGTCTTACATAAGATTGCAAGTATGAAGTTGACAGTATCATTATGCAACTGTTTTTTTATTTTTAGGTGTCGGAGCGCCTGTTACACCACAGCCACAGTTTATACTACCTACTCATTCTCCTCAATTTATGCAAGGTAGCGGTTCTGACCAAAATGCAGGGTGAGATTTTATCAAG : GTACTAGATTGCAGCAGGACTAACAGCAGCAGTATTGCTACTTGAGAGGCAGGCTTTTAATCTAGCCTTGCAAATTATTCACTTTGCATTCTAGAG : GTTATAAAAAGTCATACCCACCATGAGAGCTCAATGTCTGAGTCGCTCCTGATGATTGAGTGAGGAAACATGGAAGTTGCGGATTGCACTTCCTTCAACATCATGTATCTAGGCCCTTGCATTCTGCTGGTTTCAGGATCACTGGCAGAGAGTCATGCATTTGAGGGATACTGGAATAGGTTTCTGGCTCCCTCCTTGTAGCAATAAACTTTGTAAAAAATTCACATCAGAATCAACCTGTGATTCAGTTATAGTCAAAAACTCCCAGAATATGCTTTTGGGTGTGTAGATAGTCATTGTCTTGCGTGCTGGTGCACCATGCACCGTGTTTAAAAGTCTTGTGCATAAAAAACAAACAAGCTTTAGTCTTAAACTTGAGATTCATTCTGTAATTTGGATGTTTTATTGATGATTCTTGAAGCAAGAAGCTTCAGTTATTATCACC</gDNA_template>
            <first_frame> M  V  R  I  T  F  T  L  R  L  V  A  L  H  K  W  R  H  Y  N  T  S  H  S  F  C  C  T  *  R  F  R  C  P  F  V  L  T  M  R  T  H  F  *  C  I  L  *  F  Y  P  I  G  C  L  Q  S  L  W  R  S  T  V  P  S  Y  I  W  C  T  W  N  C  *  C  N  N  V  S  L  R  P  A  K  S  G  C  S  W  K  S  Q  L  Y  D  I  A  G  L  C  S  A  R  T  S  D  S  S  V  W  W  A  R  C  Q  C  N  D  S  F  I  H  S  N  Y  S  S  T  I  S  N  R  Q  I  S  F  I  C  I  L  Y  M  H  A  W  *  P  C  I  S  S  Y  H  *  H  *  S  A  F  Q  V  Y  Q  D  V  *  H  L  E  K  S  S  P  P  Q  R  *  G  *  G  A  A  Y  T  P  P  I  P  D  P  T  C  G  I  T  L  G  M  L  L  L  Y  D  M  I  D  I  *  K  T  C  W  N  L  I  Y  F  C  S  L  S  S  K  S  Y  I  R  L  Q  V  *  S  *  Q  Y  H  Y  A  T  V  F  L  F  L  G  V  G  A  P  V  T  P  Q  P  Q  F  I  L  P  T  H  S  P  Q  F  M  Q  G  S  G  S  D  Q  N  A  G  *  D  F  I  K  :  V  L  D  C  S  R  T  N  S  S  S  I  A  T  *  E  A  G  F  *  S  S  L  A  N  Y  S  L  C  I  L  E  :  V  I  K  S  H  T  H  H  E  S  S  M  S  E  S  L  L  M  I  E  *  G  N  M  E  V  A  D  C  T  S  F  N  I  M  Y  L  G  P  C  I  L  L  V  S  G  S  L  A  E  S  H  A  F  E  G  Y  W  N  R  F  L  A  P  S  L  *  Q  *  T  L  *  K  I  H  I  R  I  N  L  *  F  S  Y  S  Q  K  L  P  E  Y  A  F  G  C  V  D  S  H  C  L  A  C  W  C  T  M  H  R  V  *  K  S  C  A  *  K  T  N  K  L  *  S  *  T  *  D  S  F  C  N  L  D  V  L  L  M  I  L  E  A  R  S  F  S  Y  Y  H  </first_frame>
            <second_frame>  W  Y  G  L  R  L  P  S  G  *  *  H  C  I  N  G  D  I  T  I  H  P  I  L  F  A  A  L  K  G  S  G  V  L  L  S  *  L  *  G  L  I  F  D  A  Y  C  N  F  I  R  *  G  V  Y  N  P  Y  G  G  Q  Q  Y  L  P  I  Y  G  V  P  G  T  V  N  A  T  M  Y  P  Y  G  Q  L  S  Q  A  V  P  G  S  H  S  Y  T  T  L  Q  G  Y  A  V  P  G  H  Q  I  L  Q  F  G  G  P  G  V  N  A  M  T  A  S  S  I  P  T  I  Q  A  P  Y  Q  T  G  R  F  L  L  F  V  S  Y  I  C  M  H  G  S  L  A  Y  H  L  I  I  D  I  N  L  H  S  K  F  I  K  M  S  D  I  *  K  K  V  V  P  H  K  D  R  G  K  G  L  H  I  P  H  P  S  Q  T  P  L  V  V  S  H  W  V  C  C  C  C  M  T  *  L  T  S  R  K  H  A  G  T  S  S  T  S  V  A  S  V  P  S  L  T  *  D  C  K  Y  E  V  D  S  I  I  M  Q  L  F  F  Y  F  *  V  S  E  R  L  L  H  H  S  H  S  L  Y  Y  L  L  I  L  L  N  L  C  K  V  A  V  L  T  K  M  Q  G  E  I  L  S  R :   Y  *  I  A  A  G  L  T  A  A  V  L  L  L  E  R  Q  A  F  N  L  A  L  Q  I  I  H  F  A  F  *  R :   L  *  K  V  I  P  T  M  R  A  Q  C  L  S  R  S  *  *  L  S  E  E  T  W  K  L  R  I  A  L  P  S  T  S  C  I  *  A  L  A  F  C  W  F  Q  D  H  W  Q  R  V  M  H  L  R  D  T  G  I  G  F  W  L  P  P  C  S  N  K  L  C  K  K  F  T  S  E  S  T  C  D  S  V  I  V  K  N  S  Q  N  M  L  L  G  V  *  I  V  I  V  L  R  A  G  A  P  C  T  V  F  K  S  L  V  H  K  K  Q  T  S  F  S  L  K  L  E  I  H  S  V  I  W  M  F  Y  *  *  F  L  K  Q  E  A  S  V  I  I  T </second_frame>
            <third_frame>   G  T  D  Y  V  Y  P  Q  V  S  S  T  A  *  M  E  T  L  Q  Y  I  P  F  F  L  L  H  L  K  V  Q  V  S  F  C  L  D  Y  E  D  S  F  L  M  H  T  V  I  L  S  D  R  V  F  T  I  L  M  E  V  N  S  T  F  L  Y  M  V  Y  L  E  L  L  M  Q  Q  C  I  L  T  A  S  *  V  R  L  F  L  E  V  T  V  I  R  H  C  R  V  M  Q  C  Q  D  I  R  F  F  S  L  V  G  P  V  S  M  Q  *  Q  L  H  P  F  Q  L  F  K  H  H  I  K  Q  A  D  F  F  Y  L  Y  L  I  Y  A  C  M  V  A  L  H  I  I  L  S  L  T  L  I  C  I  P  S  L  S  R  C  L  T  S  R  K  K  *  S  P  T  K  I  G  V  R  G  C  I  Y  P  T  H  P  R  P  H  L  W  Y  H  T  G  Y  V  V  A  V  *  H  D  *  H  L  E  N  M  L  E  P  H  L  L  L  *  P  Q  F  Q  V  L  H  K  I  A  S  M  K  L  T  V  S  L  C  N  C  F  F  I  F  R  C  R  S  A  C  Y  T  T  A  T  V  Y  T  T  Y  S  F  S  S  I  Y  A  R  *  R  F  *  P  K  C  R  V  R  F  Y  Q   : G  T  R  L  Q  Q  D  *  Q  Q  Q  Y  C  Y  L  R  G  R  L  L  I  *  P  C  K  L  F  T  L  H  S  R   : G  Y  K  K  S  Y  P  P  *  E  L  N  V  *  V  A  P  D  D  *  V  R  K  H  G  S  C  G  L  H  F  L  Q  H  H  V  S  R  P  L  H  S  A  G  F  R  I  T  G  R  E  S  C  I  *  G  I  L  E  *  V  S  G  S  L  L  V  A  I  N  F  V  K  N  S  H  Q  N  Q  P  V  I  Q  L  *  S  K  T  P  R  I  C  F  W  V  C  R  *  S  L  S  C  V  L  V  H  H  A  P  C  L  K  V  L  C  I  K  N  K  Q  A  L  V  L  N  L  R  F  I  L  *  F  G  C  F  I  D  D  S  *  S  K  K  L  Q  L  L  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5078" stop="4731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVYNPYGGQQYLPIYGVPGTVNATMYPYGQLSQAVPGSHSYTTLQGYAVPGHQILQFGGPGVNAMTASSIPTIQAPYQTGRFLLFVSYICMHGSLAYHLIIDINLHSKFIKMSDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="6653" e_stop="6024"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="6653" e_stop="6024" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6653" stop="6024"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314552" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTCTGCTTTTTGGGGATTTTGTATAATTTTATCTTTAAGAGATTGTGGTACATGGTTTAAAATGAGAAATAAAGTGATGTGAACAGGTCTCCTTGATCAGAGACTGAACATCATGAAGTGCATGTAATCACTAACTGTGCTTCAGAACACTCTCTAGTCTTTTCTCCTGAAGTTACAAGAATTCATCCCTCATCACAAAGTGACACAATGATCTTTTCCCCTTCAATAATTTCCTTGTTTGCGTGGCTGTTTTTTTTGTAACATAACAGGTGCAGTATGTTTTGACAATCTTTTGGCTTGGCCCTATACCCATCTACCTTCTTGGTGGATGGCGGAGATCTTCTCTTCGACTTCTCCAAAATTGATTGTGTGGAAATGAATACATTGCTAGCACACTTAATCAATTACTTATGTGACCTTTGCACAATCAATGTGGAGAGCTGTTTCCTTGGCTTCTCTTGAACACATTGATAATCTTTGAAACTAGAAGCTGAAAGTTCCTTTACAGGCCATTTATATGAAAAATTGTAAAGCTGCCTGAGAATTGTTGTAAAAACATCTATAAGGATCACCTCCTTTTCTAAGGATCCTGCAAATATCGATTCATGGCTGGTTATGTGTTTGACTG</gDNA_template>
            <first_frame> M  S  A  F  W  G  F  C  I  I  L  S  L  R  D  C  G  T  W  F  K  M  R  N  K  V  M  *  T  G  L  L  D  Q  R  L  N  I  M  K  C  M  *  S  L  T  V  L  Q  N  T  L  *  S  F  L  L  K  L  Q  E  F  I  P  H  H  K  V  T  Q  *  S  F  P  L  Q  *  F  P  C  L  R  G  C  F  F  C  N  I  T  G  A  V  C  F  D  N  L  L  A  W  P  Y  T  H  L  P  S  W  W  M  A  E  I  F  S  S  T  S  P  K  L  I  V  W  K  *  I  H  C  *  H  T  *  S  I  T  Y  V  T  F  A  Q  S  M  W  R  A  V  S  L  A  S  L  E  H  I  D  N  L  *  N  *  K  L  K  V  P  L  Q  A  I  Y  M  K  N  C  K  A  A  *  E  L  L  *  K  H  L  *  G  S  P  P  F  L  R  I  L  Q  I  S  I  H  G  W  L  C  V  *  L </first_frame>
            <second_frame>  C  L  L  F  G  D  F  V  *  F  Y  L  *  E  I  V  V  H  G  L  K  *  E  I  K  *  C  E  Q  V  S  L  I  R  D  *  T  S  *  S  A  C  N  H  *  L  C  F  R  T  L  S  S  L  F  S  *  S  Y  K  N  S  S  L  I  T  K  *  H  N  D  L  F  P  F  N  N  F  L  V  C  V  A  V  F  F  V  T  *  Q  V  Q  Y  V  L  T  I  F  W  L  G  P  I  P  I  Y  L  L  G  G  W  R  R  S  S  L  R  L  L  Q  N  *  L  C  G  N  E  Y  I  A  S  T  L  N  Q  L  L  M  *  P  L  H  N  Q  C  G  E  L  F  P  W  L  L  L  N  T  L  I  I  F  E  T  R  S  *  K  F  L  Y  R  P  F  I  *  K  I  V  K  L  P  E  N  C  C  K  N  I  Y  K  D  H  L  L  F  *  G  S  C  K  Y  R  F  M  A  G  Y  V  F  D   </second_frame>
            <third_frame>   V  C  F  L  G  I  L  Y  N  F  I  F  K  R  L  W  Y  M  V  *  N  E  K  *  S  D  V  N  R  S  P  *  S  E  T  E  H  H  E  V  H  V  I  T  N  C  A  S  E  H  S  L  V  F  S  P  E  V  T  R  I  H  P  S  S  Q  S  D  T  M  I  F  S  P  S  I  I  S  L  F  A  W  L  F  F  L  *  H  N  R  C  S  M  F  *  Q  S  F  G  L  A  L  Y  P  S  T  F  L  V  D  G  G  D  L  L  F  D  F  S  K  I  D  C  V  E  M  N  T  L  L  A  H  L  I  N  Y  L  C  D  L  C  T  I  N  V  E  S  C  F  L  G  F  S  *  T  H  *  *  S  L  K  L  E  A  E  S  S  F  T  G  H  L  Y  E  K  L  *  S  C  L  R  I  V  V  K  T  S  I  R  I  T  S  F  S  K  D  P  A  N  I  D  S  W  L  V  M  C  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="12740" PGL_stop="9001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12740" e_stop="12590"/>
            <exon e_start="12507" e_stop="12338"/>
            <exon e_start="11735" e_stop="11550"/>
            <exon e_start="11287" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12740" e_stop="12590" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12507" e_stop="12338" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="11550" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.902">
            <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11287" e_stop="11125" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="6" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="6" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="7" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12740" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12735" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12726" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12719" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12715" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12715" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12711" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12711" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12709" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12701" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12699" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12697" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12695" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12695" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12687" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12652" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11695" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11276" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10084" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCACCGTTTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT : AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> V  H  R  L  V  C  G  *  G  M  A  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : S  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  :  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </first_frame>
            <second_frame>  S  T  V  *  C  V  D  E  A  W  R  *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  I :   T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </second_frame>
            <third_frame>   P  P  F  S  V  W  M  R  H  G  V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *   : *  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12716" stop="12590"/>
                    <exon start="12507" stop="12338"/>
                    <exon start="11735" stop="11550"/>
                    <exon start="11287" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMALMGEKFRVCVTGAGGYVASSLVKLLLSKDYIVHGTVRDPSDDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12740" e_stop="12590"/>
            <exon e_start="12507" e_stop="12338"/>
            <exon e_start="11735" e_stop="11550"/>
            <exon e_start="11287" e_stop="11125"/>
            <exon e_start="10127" e_stop="9566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12740" e_stop="12590" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12507" e_stop="12338" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="11550" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.902">
            <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11287" e_stop="11125" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="10127" e_stop="9566" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12740" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12727" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12726" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12719" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12715" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12715" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12711" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12709" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339416" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12707" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="10005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12701" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12699" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12697" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12695" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12695" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12652" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10112" stop="9566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCACCGTTTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT : AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACGGTGAATTTCTCTCCTTTTCACTTTATGCTTCTTTAATGTGAATATAGTGTCCTATTTCCTGTGTATGGTTTAAGAGTTGCAGGGGAAAAAAGCAGCTTAAGGAAATTGGGACTTGTCTTATGGGTATTTCATTTCGTATTTCCAGTGTGTTTGGTTAAGAATTTGGTCTATTTGATCAGGTGTATTGATAAATATTCTTGTAACAAACCTTGCCCACTAGTAATATTGTCTGGTTCGGGCCTAGGAGCACACAACTTTAAAATTCATTGCCTAGAGAGATTCTTGAAGAACTGTTAGACCTTAGTGAGCATTTCTATGCCATACAAGCCTAGACTCAAATGAGATATCAATAGTGGACCGGGCTCTCTTACC</gDNA_template>
            <first_frame> V  H  R  L  V  C  G  *  G  M  A  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : S  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  :  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R  *  I  S  L  L  F  T  L  C  F  F  N  V  N  I  V  S  Y  F  L  C  M  V  *  E  L  Q  G  K  K  A  A  *  G  N  W  D  L  S  Y  G  Y  F  I  S  Y  F  Q  C  V  W  L  R  I  W  S  I  *  S  G  V  L  I  N  I  L  V  T  N  L  A  H  *  *  Y  C  L  V  R  A  *  E  H  T  T  L  K  F  I  A  *  R  D  S  *  R  T  V  R  P  *  *  A  F  L  C  H  T  S  L  D  S  N  E  I  S  I  V  D  R  A  L  L   </first_frame>
            <second_frame>  S  T  V  *  C  V  D  E  A  W  R  *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  I :   T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N  G  E  F  L  S  F  S  L  Y  A  S  L  M  *  I  *  C  P  I  S  C  V  W  F  K  S  C  R  G  K  K  Q  L  K  E  I  G  T  C  L  M  G  I  S  F  R  I  S  S  V  F  G  *  E  F  G  L  F  D  Q  V  Y  *  *  I  F  L  *  Q  T  L  P  T  S  N  I  V  W  F  G  P  R  S  T  Q  L  *  N  S  L  P  R  E  I  L  E  E  L  L  D  L  S  E  H  F  Y  A  I  Q  A  *  T  Q  M  R  Y  Q  *  W  T  G  L  S  Y  </second_frame>
            <third_frame>   P  P  F  S  V  W  M  R  H  G  V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *   : *  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  V  N  F  S  P  F  H  F  M  L  L  *  C  E  Y  S  V  L  F  P  V  Y  G  L  R  V  A  G  E  K  S  S  L  R  K  L  G  L  V  L  W  V  F  H  F  V  F  P  V  C  L  V  K  N  L  V  Y  L  I  R  C  I  D  K  Y  S  C  N  K  P  C  P  L  V  I  L  S  G  S  G  L  G  A  H  N  F  K  I  H  C  L  E  R  F  L  K  N  C  *  T  L  V  S  I  S  M  P  Y  K  P  R  L  K  *  D  I  N  S  G  P  G  S  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12716" stop="12590"/>
                    <exon start="12507" stop="12338"/>
                    <exon start="11735" stop="11550"/>
                    <exon start="11287" stop="11125"/>
                    <exon start="10127" stop="9934"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMALMGEKFRVCVTGAGGYVASSLVKLLLSKDYIVHGTVRDPSDDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9901" stop="9641"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CEYSVLFPVYGLRVAGEKSSLRKLGLVLWVFHFVFPVCLVKNLVYLIRCIDKYSCNKPCPLVILSGSGLGAHNFKIHCLERFLKNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12731" e_stop="12590"/>
            <exon e_start="12507" e_stop="12338"/>
            <exon e_start="11735" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="0.908"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12731" e_stop="12590" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12507" e_stop="12338" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="11735" e_stop="11125" e_length="611"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="5" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12709" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12699" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12652" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="11735" stop="11706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11676" stop="11187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11666" stop="11409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11276" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10084" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> L  V  C  G  *  G  M  A  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : S  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  V  A  S  F  T  Y  A  S  L  R  I  *  L  L  C  K  F  M  I  I  S  H  V  S  Y  I  *  Y  V  L  L  V  M  *  Y  M  I  F  I  L  N  T  *  F  T  *  G  V  S  F  L  V  G  L  V  F  V  R  *  I  W  I  *  F  L  K  A  Y  F  A  R  S  A  S  Y  L  S  D  C  I  L  W  F  Q  M  H  A  E  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </first_frame>
            <second_frame>  *  C  V  D  E  A  W  R  *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  M  *  L  L  L  P  M  L  V  C  E  F  D  F  S  V  N  L  *  L  L  A  M  F  L  T  Y  D  T  Y  C  W  *  C  N  I  *  S  L  S  *  I  L  N  L  L  E  E  C  P  F  W  L  A  *  F  L  *  D  K  F  G  F  D  S  *  R  L  I  L  P  D  Q  L  P  I  C  L  I  A  F  C  G  S  K  C  M  Q  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </second_frame>
            <third_frame>   S  V  W  M  R  H  G  V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *  C  S  F  F  Y  L  C  *  F  A  N  L  T  S  L  *  I  Y  D  Y  *  P  C  F  L  H  M  I  R  T  V  G  N  V  I  Y  D  L  Y  L  E  Y  L  I  Y  L  R  S  V  L  F  G  W  L  S  F  C  K  I  N  L  D  L  I  L  E  G  L  F  C  Q  I  S  F  L  S  V  *  L  H  F  V  V  P  N  A  C  R  T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11353" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLILPDQLPICLIAFCGSKCMQNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12716" stop="12590"/>
                    <exon start="12507" stop="12338"/>
                    <exon start="11735" stop="11514"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMALMGEKFRVCVTGAGGYVASSLVKLLLSKDYIVHGTVRDPSDDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDVASFTYASLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="12731" e_stop="12590"/>
            <exon e_start="12507" e_stop="12338"/>
            <exon e_start="12070" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.723" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="0.908"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12731" e_stop="12590" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12589" i_stop="12508" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12507" e_stop="12338" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.723">
            <gDNA_intron_boundary i_start="12337" i_stop="12071" i_length="267"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="12070" e_stop="11125" e_length="946"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="5" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12731" stop="12590"/>
              <exon start="12507" stop="12380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12708" stop="12590"/>
              <exon start="12507" stop="12338"/>
              <exon start="12070" stop="11669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11676" stop="11187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11666" stop="11409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11276" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10084" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGTGTGTGGATGAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : CTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : ATAGCAGTGGAATCTTTATAAACAGTCTAGAATGCACATGTTATTACTTGTTGAAAGCTATTAGAGGTGTGTTTCTACTCAATGAAGGACGAGATAGTGAACTTATATTGGGATTTTATTATGATGTGCTGTTCAAAAAGATCTTTTCAATAAGAGACACGCTTCCCTATTTGAGAGCCTAAGACATTGAGAAATCCAGTGCATCCAGGAGACATTGTATTGTGACCAAGCATTCTGCATTTCTAGGTTGCTTTTGGAACAACTATTCCCAATGTGCTCTAGTTCTGCACCAAAAGAAAGTAAAATTCTTCATATGTTCAATGTCTTGACTGCAGGTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> L  V  C  G  *  G  M  A  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : S  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  I  A  V  E  S  L  *  T  V  *  N  A  H  V  I  T  C  *  K  L  L  E  V  C  F  Y  S  M  K  D  E  I  V  N  L  Y  W  D  F  I  M  M  C  C  S  K  R  S  F  Q  *  E  T  R  F  P  I  *  E  P  K  T  L  R  N  P  V  H  P  G  D  I  V  L  *  P  S  I  L  H  F  *  V  A  F  G  T  T  I  P  N  V  L  *  F  C  T  K  R  K  *  N  S  S  Y  V  Q  C  L  D  C  R  *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  M  *  L  L  L  P  M  L  V  C  E  F  D  F  S  V  N  L  *  L  L  A  M  F  L  T  Y  D  T  Y  C  W  *  C  N  I  *  S  L  S  *  I  L  N  L  L  E  E  C  P  F  W  L  A  *  F  L  *  D  K  F  G  F  D  S  *  R  L  I  L  P  D  Q  L  P  I  C  L  I  A  F  C  G  S  K  C  M  Q  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </first_frame>
            <second_frame>  *  C  V  D  E  A  W  R  *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  Q  W  N  L  Y  K  Q  S  R  M  H  M  L  L  L  V  E  S  Y  *  R  C  V  S  T  Q  *  R  T  R  *  *  T  Y  I  G  I  L  L  *  C  A  V  Q  K  D  L  F  N  K  R  H  A  S  L  F  E  S  L  R  H  *  E  I  Q  C  I  Q  E  T  L  Y  C  D  Q  A  F  C  I  S  R  L  L  L  E  Q  L  F  P  M  C  S  S  S  A  P  K  E  S  K  I  L  H  M  F  N  V  L  T  A  G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *  C  S  F  F  Y  L  C  *  F  A  N  L  T  S  L  *  I  Y  D  Y  *  P  C  F  L  H  M  I  R  T  V  G  N  V  I  Y  D  L  Y  L  E  Y  L  I  Y  L  R  S  V  L  F  G  W  L  S  F  C  K  I  N  L  D  L  I  L  E  G  L  F  C  Q  I  S  F  L  S  V  *  L  H  F  V  V  P  N  A  C  R  T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </second_frame>
            <third_frame>   S  V  W  M  R  H  G  V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : D  S  S  G  I  F  I  N  S  L  E  C  T  C  Y  Y  L  L  K  A  I  R  G  V  F  L  L  N  E  G  R  D  S  E  L  I  L  G  F  Y  Y  D  V  L  F  K  K  I  F  S  I  R  D  T  L  P  Y  L  R  A  *  D  I  E  K  S  S  A  S  R  R  H  C  I  V  T  K  H  S  A  F  L  G  C  F  W  N  N  Y  S  Q  C  A  L  V  L  H  Q  K  K  V  K  F  F  I  C  S  M  S  *  L  Q  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  V  A  S  F  T  Y  A  S  L  R  I  *  L  L  C  K  F  M  I  I  S  H  V  S  Y  I  *  Y  V  L  L  V  M  *  Y  M  I  F  I  L  N  T  *  F  T  *  G  V  S  F  L  V  G  L  V  F  V  R  *  I  W  I  *  F  L  K  A  Y  F  A  R  S  A  S  Y  L  S  D  C  I  L  W  F  Q  M  H  A  E  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11353" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLILPDQLPICLIAFCGSKCMQNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12716" stop="12590"/>
                    <exon start="12507" stop="12338"/>
                    <exon start="12070" stop="12050"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMALMGEKFRVCVTGAGGYVASSLVKLLLSKDYIVHGTVRDPSDDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEIAVESL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11741" stop="11514"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDVASFTYASLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="12526" e_stop="12338"/>
            <exon e_start="11735" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="0.908"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="12526" e_stop="12338" e_length="189"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="0.908">
            <gDNA_exon_boundary e_start="11735" e_stop="11125" e_length="611"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12526" stop="12338"/>
              <exon start="11735" stop="11409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11676" stop="11187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11666" stop="11409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11276" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10084" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGATGTAGCTTCTTTTACCTATGCTAGTTTGCGAATTTGACTTCTCTGTAAATTTATGATTATTAGCCATGTTTCTTACATATGATACGTACTGTTGGTAATGTAATATATGATCTTTATCTTGAATACTTAATTTACTTGAGGAGTGTCCTTTTTGGTTGGCTTAGTTTTTGTAAGATAAATTTGGATTTGATTCTTGAAGGCTTATTTTGCCAGATCAGCTTCCTATCTGTCTGATTGCATTTTGTGGTTCCAAATGCATGCAGAACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> F  L  I  C  T  A  A  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  V  A  S  F  T  Y  A  S  L  R  I  *  L  L  C  K  F  M  I  I  S  H  V  S  Y  I  *  Y  V  L  L  V  M  *  Y  M  I  F  I  L  N  T  *  F  T  *  G  V  S  F  L  V  G  L  V  F  V  R  *  I  W  I  *  F  L  K  A  Y  F  A  R  S  A  S  Y  L  S  D  C  I  L  W  F  Q  M  H  A  E  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </first_frame>
            <second_frame>  S  *  F  A  L  Q  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  M  *  L  L  L  P  M  L  V  C  E  F  D  F  S  V  N  L  *  L  L  A  M  F  L  T  Y  D  T  Y  C  W  *  C  N  I  *  S  L  S  *  I  L  N  L  L  E  E  C  P  F  W  L  A  *  F  L  *  D  K  F  G  F  D  S  *  R  L  I  L  P  D  Q  L  P  I  C  L  I  A  F  C  G  S  K  C  M  Q  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </second_frame>
            <third_frame>   L  N  L  H  C  S  *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *  C  S  F  F  Y  L  C  *  F  A  N  L  T  S  L  *  I  Y  D  Y  *  P  C  F  L  H  M  I  R  T  V  G  N  V  I  Y  D  L  Y  L  E  Y  L  I  Y  L  R  S  V  L  F  G  W  L  S  F  C  K  I  N  L  D  L  I  L  E  G  L  F  C  Q  I  S  F  L  S  V  *  L  H  F  V  V  P  N  A  C  R  T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11353" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLILPDQLPICLIAFCGSKCMQNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12526" stop="12338"/>
                    <exon start="11735" stop="11514"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLICTAADDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDVASFTYASLRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="12576" e_stop="12338"/>
            <exon e_start="11735" e_stop="11550"/>
            <exon e_start="11287" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12576" e_stop="12338" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11735" e_stop="11550" e_length="186"/>
          </exon>
          <intron i_serial="2" don_prob="0.803" acc_prob="0.902">
            <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11287" e_stop="11125" e_length="163"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="5" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="6" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12576" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11695" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11276" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10084" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTGATTTGTTTTCCTACTAATTTTAGACCTCAGATTCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT : AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> L  *  F  V  F  L  L  I  L  D  L  R  F  L  R  N  D  S  *  F  A  L  Q  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  I :   T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </first_frame>
            <second_frame>  F  D  L  F  S  Y  *  F  *  T  S  D  S  *  E  M  I  L  N  L  H  C  S  *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *   : *  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </second_frame>
            <third_frame>   L  I  C  F  P  T  N  F  R  P  Q  I  P  E  K  *  F  L  I  C  T  A  A  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  :  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12526" stop="12338"/>
                    <exon start="11735" stop="11550"/>
                    <exon start="11287" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLICTAADDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="12718" e_stop="12590"/>
            <exon e_start="12539" e_stop="12338"/>
            <exon e_start="11735" e_stop="11550"/>
            <exon e_start="11287" e_stop="11125"/>
            <exon e_start="10127" e_stop="9938"/>
            <exon e_start="9512" e_stop="9229"/>
            <exon e_start="9007" e_stop="9001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.000" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.856"/>
          <exon-intron don_prob="0.803" acc_prob="0.902" e_score="0.925"/>
          <exon-intron don_prob="0.996" acc_prob="0.307" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.397" e_score="0.968"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="12718" e_stop="12590" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12589" i_stop="12540" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.856">
            <gDNA_exon_boundary e_start="12539" e_stop="12338" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12337" i_stop="11736" i_length="602"/>
          </intron>
          <exon e_serial="3" e_score="0.925">
            <gDNA_exon_boundary e_start="11735" e_stop="11550" e_length="186"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="0.902">
            <gDNA_intron_boundary i_start="11549" i_stop="11288" i_length="262"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11287" e_stop="11125" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.307">
            <gDNA_intron_boundary i_start="11124" i_stop="10128" i_length="997"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10127" e_stop="9938" e_length="190"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9937" i_stop="9513" i_length="425"/>
          </intron>
          <exon e_serial="6" e_score="0.968">
            <gDNA_exon_boundary e_start="9512" e_stop="9229" e_length="284"/>
          </exon>
          <intron i_serial="6" don_prob="0.615" acc_prob="0.397">
            <gDNA_intron_boundary i_start="9228" i_stop="9008" i_length="221"/>
          </intron>
          <exon e_serial="7" e_score="0.714">
            <gDNA_exon_boundary e_start="9007" e_stop="9001" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12718" stop="12590"/>
              <exon start="12539" stop="12338"/>
              <exon start="11735" stop="11550"/>
              <exon start="11287" stop="11129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11695" stop="11550"/>
              <exon start="11287" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11276" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11150" stop="11125"/>
              <exon start="10127" stop="9938"/>
              <exon start="9512" stop="9276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10084" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="9938"/>
              <exon start="9512" stop="9229"/>
              <exon start="9007" stop="9001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217307" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGCATGGCGTTGATGGGAGAGAAATTTCGAGTGTGTGTAACTGGAGCAGGTGGATACGTGGCTTCATCGCTAGTGAAGCTTCTCCTTTCTAAAGACTACATAGTTCATGGCACCGTCAGAGATCCTT : TCCTGAGAAATGATTCTTAATTTGCACTGCAGCTGATGACAAGTATGCTCATTTGAATAACCTTGATAAAGCTGCTGACAACCTTAAGCTATTCAAGGCAGACTTGCTAGATCCCAACTCACTTGCTGGAGCCATCAAAGGATGCGATGGGGTATTTCATGTTGCTAGTCCTGTTCCTTCCGGCTCTGTACCAAATCCCGAG : GTAGAACTTGTTGAGCCTGCTGTGAACGGCACACTTAATGTTCTCAAGGCATGCTATGAAGAAAACATCAAGAGAGTTGTGTTTGTGTCTTCTGTTGCTGCTTCTGCCTTGGACCCCAACTGGCCAAAAGGCCAAGTGAAGGACGAGACTTGTTGGTCGGATGGTGAATTCTGCAAAGCAACTGAT : AACTGGTACTGTTTTTCTAAAACGGTGGCTGAGAAAGAAGCTTGGTCATATGCAAAGCAAAGTGGACTTGATTTGGTAACTGTGCTCCCAACACTTGTTATAGGGCCAATGTTGCAGAAGACAAAAAACTCAAGTAGTTTGGTACTCATTAAGCTGCTGAAAG : AAGGATACGAAGAGCTGGAAAACAAGAAACGGTTTTTGGTAGACGTACGTGATTTAGCTGATGCTTTACTGCTAGTCTATGAGAGACCTGAAGCTGAAGGTAGATACTTGTGCATGGCTCATGCAGTGAAATCAGAAGATTTAGTTGCCATGCTAAAGAAACAATATCCCAACTACAACTATCCTAAACG : TTTTACTGATGTGACGGAGGATGGTGGTTTTAGTTCAGAGAAGCTGCAGAAGTTGGGTTGGCAATATAGGGCACTGGAGGAAACTCTAGTTGATGCAGTTGAAAGTTACAAACAAAAGGGCTTTCTTGATTGAAGAAAAGACCCTTTTTTTCTTGTTGTCGTACTAAATAATTGCTCTGTATGTTTTTCAAGTTTTCACACTTGCAAACTAGTCTGGAATAAGGAGGTTACACTATGGTACCTTTTGAGTTCTATTTAGTTGTTTTGTTTTGCTCTCAGTTGAG : AGAACAA</gDNA_template>
            <first_frame> E  A  W  R  *  W  E  R  N  F  E  C  V  *  L  E  Q  V  D  T  W  L  H  R  *  *  S  F  S  F  L  K  T  T  *  F  M  A  P  S  E  I  L  :  S  *  E  M  I  L  N  L  H  C  S  *  *  Q  V  C  S  F  E  *  P  *  *  S  C  *  Q  P  *  A  I  Q  G  R  L  A  R  S  Q  L  T  C  W  S  H  Q  R  M  R  W  G  I  S  C  C  *  S  C  S  F  R  L  C  T  K  S  R   : G  R  T  C  *  A  C  C  E  R  H  T  *  C  S  Q  G  M  L  *  R  K  H  Q  E  S  C  V  C  V  F  C  C  C  F  C  L  G  P  Q  L  A  K  R  P  S  E  G  R  D  L  L  V  G  W  *  I  L  Q  S  N  *   : *  L  V  L  F  F  *  N  G  G  *  E  R  S  L  V  I  C  K  A  K  W  T  *  F  G  N  C  A  P  N  T  C  Y  R  A  N  V  A  E  D  K  K  L  K  *  F  G  T  H  *  A  A  E  R :   R  I  R  R  A  G  K  Q  E  T  V  F  G  R  R  T  *  F  S  *  C  F  T  A  S  L  *  E  T  *  S  *  R  *  I  L  V  H  G  S  C  S  E  I  R  R  F  S  C  H  A  K  E  T  I  S  Q  L  Q  L  S  *  T  :  F  Y  *  C  D  G  G  W  W  F  *  F  R  E  A  A  E  V  G  L  A  I  *  G  T  G  G  N  S  S  *  C  S  *  K  L  Q  T  K  G  L  S  *  L  K  K  R  P  F  F  S  C  C  R  T  K  *  L  L  C  M  F  F  K  F  S  H  L  Q  T  S  L  E  *  G  G  Y  T  M  V  P  F  E  F  Y  L  V  V  L  F  C  S  Q  L  R :   E  Q </first_frame>
            <second_frame>  R  H  G  V  D  G  R  E  I  S  S  V  C  N  W  S  R  W  I  R  G  F  I  A  S  E  A  S  P  F  *  R  L  H  S  S  W  H  R  Q  R  S  F :   P  E  K  *  F  L  I  C  T  A  A  D  D  K  Y  A  H  L  N  N  L  D  K  A  A  D  N  L  K  L  F  K  A  D  L  L  D  P  N  S  L  A  G  A  I  K  G  C  D  G  V  F  H  V  A  S  P  V  P  S  G  S  V  P  N  P  E  :  V  E  L  V  E  P  A  V  N  G  T  L  N  V  L  K  A  C  Y  E  E  N  I  K  R  V  V  F  V  S  S  V  A  A  S  A  L  D  P  N  W  P  K  G  Q  V  K  D  E  T  C  W  S  D  G  E  F  C  K  A  T  D  :  N  W  Y  C  F  S  K  T  V  A  E  K  E  A  W  S  Y  A  K  Q  S  G  L  D  L  V  T  V  L  P  T  L  V  I  G  P  M  L  Q  K  T  K  N  S  S  S  L  V  L  I  K  L  L  K   : E  G  Y  E  E  L  E  N  K  K  R  F  L  V  D  V  R  D  L  A  D  A  L  L  L  V  Y  E  R  P  E  A  E  G  R  Y  L  C  M  A  H  A  V  K  S  E  D  L  V  A  M  L  K  K  Q  Y  P  N  Y  N  Y  P  K  R :   F  T  D  V  T  E  D  G  G  F  S  S  E  K  L  Q  K  L  G  W  Q  Y  R  A  L  E  E  T  L  V  D  A  V  E  S  Y  K  Q  K  G  F  L  D  *  R  K  D  P  F  F  L  V  V  V  L  N  N  C  S  V  C  F  S  S  F  H  T  C  K  L  V  W  N  K  E  V  T  L  W  Y  L  L  S  S  I  *  L  F  C  F  A  L  S  *   : E  N   </second_frame>
            <third_frame>   G  M  A  L  M  G  E  K  F  R  V  C  V  T  G  A  G  G  Y  V  A  S  S  L  V  K  L  L  L  S  K  D  Y  I  V  H  G  T  V  R  D  P   : F  L  R  N  D  S  *  F  A  L  Q  L  M  T  S  M  L  I  *  I  T  L  I  K  L  L  T  T  L  S  Y  S  R  Q  T  C  *  I  P  T  H  L  L  E  P  S  K  D  A  M  G  Y  F  M  L  L  V  L  F  L  P  A  L  Y  Q  I  P  R :   *  N  L  L  S  L  L  *  T  A  H  L  M  F  S  R  H  A  M  K  K  T  S  R  E  L  C  L  C  L  L  L  L  L  L  P  W  T  P  T  G  Q  K  A  K  *  R  T  R  L  V  G  R  M  V  N  S  A  K  Q  L  I :   T  G  T  V  F  L  K  R  W  L  R  K  K  L  G  H  M  Q  S  K  V  D  L  I  W  *  L  C  S  Q  H  L  L  *  G  Q  C  C  R  R  Q  K  T  Q  V  V  W  Y  S  L  S  C  *  K  :  K  D  T  K  S  W  K  T  R  N  G  F  W  *  T  Y  V  I  *  L  M  L  Y  C  *  S  M  R  D  L  K  L  K  V  D  T  C  A  W  L  M  Q  *  N  Q  K  I  *  L  P  C  *  R  N  N  I  P  T  T  T  I  L  N   : V  L  L  M  *  R  R  M  V  V  L  V  Q  R  S  C  R  S  W  V  G  N  I  G  H  W  R  K  L  *  L  M  Q  L  K  V  T  N  K  R  A  F  L  I  E  E  K  T  L  F  F  L  L  S  Y  *  I  I  A  L  Y  V  F  Q  V  F  T  L  A  N  *  S  G  I  R  R  L  H  Y  G  T  F  *  V  L  F  S  C  F  V  L  L  S  V  E  :  R  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12526" stop="12338"/>
                    <exon start="11735" stop="11550"/>
                    <exon start="11287" stop="11125"/>
                    <exon start="10127" stop="9938"/>
                    <exon start="9512" stop="9380"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLICTAADDKYAHLNNLDKAADNLKLFKADLLDPNSLAGAIKGCDGVFHVASPVPSGSVPNPEVELVEPAVNGTLNVLKACYEENIKRVVFVSSVAASALDPNWPKGQVKDETCWSDGEFCKATDNWYCFSKTVAEKEAWSYAKQSGLDLVTVLPTLVIGPMLQKTKNSSSLVLIKLLKEGYEELENKKRFLVDVRDLADALLLVYERPEAEGRYLCMAHAVKSEDLVAMLKKQYPNYNYPKRFTDVTEDGGFSSEKLQKLGWQYRALEETLVDAVESYKQKGFLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="19030" PGL_stop="13825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19030" e_stop="18790"/>
            <exon e_start="18669" e_stop="18376"/>
            <exon e_start="17532" e_stop="17305"/>
            <exon e_start="17017" e_stop="16952"/>
            <exon e_start="15811" e_stop="15395"/>
            <exon e_start="15217" e_stop="15106"/>
            <exon e_start="14995" e_stop="14910"/>
            <exon e_start="14379" e_stop="13825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="19030" e_stop="18790" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18669" e_stop="18376" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17532" e_stop="17305" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17017" e_stop="16952" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15811" e_stop="15395" e_length="417"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15217" e_stop="15106" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14995" e_stop="14910" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14909" i_stop="14380" i_length="530"/>
          </intron>
          <exon e_serial="8" e_score="0.995">
            <gDNA_exon_boundary e_start="14379" e_stop="13825" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19030" stop="18790"/>
              <exon start="18669" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19027" stop="18790"/>
              <exon start="18669" stop="18436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18790"/>
              <exon start="18669" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18942" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18910" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18898" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18865" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18834" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18830" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18829" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18647" stop="18376"/>
              <exon start="17532" stop="17328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18634" stop="18376"/>
              <exon start="17532" stop="17313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18509" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18412" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="17000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17502" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17400" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17389" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17375" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17348" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17321" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16973" stop="16952"/>
              <exon start="15811" stop="15513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15704" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15654" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14379" stop="14250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15541" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14379" stop="14267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15475" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14379" stop="14098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14220" stop="13825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14123" stop="13825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG : GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG : AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAG : AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG : GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG : GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG : GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG : ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</gDNA_template>
            <first_frame> S  N  G  R  R  F  H  Y  L  H  C  H  Q  *  H  R  R  F  Y  D  S  K  P  T  R  I  Q  K  L  G  R  P  S  R  R  N  R  S  S  *  A  V  F  R  F  *  *  G  R  C  C  R  D  K  Y  R  I  S  T  S  R  *  V  Q  K  R  Q  L  H  S  L  *  S  G  R  F  Q  H  R  S   : G  Y  I  W  R  Y  Y  V  Q  I  S  E  E  I  *  G  F  E  L  I  S  *  A  I  E  G  I  I  C  T  N  A  V  *  A  S  *  Q  D  S  G  N  *  F  A  Y  D  S  Y  A  S  V  Q  E  S  Y  C  S  G  S  *  R  F  W  *  N  Y  L  L  C  A  W  D  V  E  S  N  *  S  K  A  C  C  P  S  S  S  L  Y  L  S  N  Q  R  I  G  Y  S   : E  Y  G  S  A  I  E  D  G  E  V  H  W  H  N  I  R  V  R  Y  P  S  R  F  C  Q  L  Y  S  N  F  K  T  S  T  C  Y  G  T  S  S  D  W  H  T  W  D  Y  K  Q  V  G  D  G  K  E  T  G  H  E  L  H  E  N  S  C  V  *  *  S  R  P  H  V  G  R   : E  R  F  S  G  *  F  H  K  N  N  E  G  N  C  *  S  Q  R  *  L  P   : G  A  S  L  F  C  N  F  W  G  K  C  Q  S  I  C  D  K  N  C  S  R  S  F  R  A  R  L  Q  P  N  V  C  E  E  R  R  T  F  A  G  F  S  E  A  V  *  S  T  V  S  R  *  T  F  K  N  Y  G  D  *  R  Q  N  T  *  T  R  T  E  G  G  A  N  N  Y  I  R  S  Y  Q  K  Q  C  K  Y  V  A  *  V  I  G  *  L  W  L  *  S  D  N  N  S  R  C  P  *  A  R  R  Q  R  Q  N  N  Q  G  V  Q  R  W  I  D  T  N  S  Y  I  N  *  S  S  C  S  G  I  *  P  I  T   : G  *  F  G  G  *  L  *  P  P  C  E  T  *  E  S  N  R  A  R  S  *  G  I  L  A  S  D  W  *  S  R  T  F  W  T  Q  R :   C  D  I  Q  L  A  V  Q  *  P  R  Q  H  A  N  V  K  D  *  E  P  F  Q  P  S  S  G  *   : D  L  M  E  *  *  R  R  L  *  K  C  S  E  D  S  W  L  A  V  S  R  V  *  M  L  V  I  F  I  D  F  E  *  N  Y  T  G  W  *  *  H  L  Y  R  *  Q  S  S  A  P  G  R  L  F  F  L  I  A  L  M  L  H  L  P  F  L  V  L  *  L  L  K  N  M  P  N  L  P  M  L  N  R  I  N  T  F  K  R  N  M  *  R  K  T  I  I  F  *  T  Q  Q  C  K  *  L  K  N  F  A  I  Q  *  A  K  T  A  A  K  V  T  S  N  S  G  R  A  Q  R  T  N  G  R  N  T  N  H  N  R  *  P  E  S  S  P  T  P  Y  N  L  F  L  F  Y  C  I  S  Y  L  L  L  L  L  T  A  F  M  T  L  L  F  H  F  L  F  I  L  L  S  Y  F  G  V  F  W  </first_frame>
            <second_frame>  P  M  A  D  A  S  I  T  S  T  A  T  S  S  I  A  A  S  T  T  A  N  P  P  E  S  K  S  W  A  D  Q  A  D  E  I  D  Q  A  E  Q  S  S  A  S  N  E  D  A  A  A  E  I  N  I  G  S  L  Q  V  D  E  S  K  R  D  N  S  T  L  S  D  P  E  D  S  S  I  E  A  :  V  T  S  G  D  T  M  Y  K  S  A  K  R  F  E  D  L  N  L  S  P  E  L  L  K  G  L  Y  V  Q  M  Q  F  E  R  P  S  K  I  Q  E  I  S  L  P  M  I  L  T  P  P  Y  K  N  L  I  A  Q  A  H  N  G  S  G  K  T  T  C  F  V  L  G  M  L  S  R  I  D  P  K  L  A  A  P  Q  A  L  C  I  C  P  T  R  E  L  A  I  Q  :  N  M  E  V  L  L  K  M  G  K  F  T  G  I  T  S  E  L  G  I  P  A  D  S  A  N  Y  I  P  I  S  K  R  P  P  V  T  A  Q  V  V  I  G  T  P  G  T  I  N  K  W  V  T  G  R  K  L  G  M  S  C  M  K  I  L  V  F  D  E  A  D  H  M  L  A  E  :  S  G  F  Q  D  D  S  I  R  I  M  K  A  I  V  K  A  S  A  N  C  Q  :  V  L  L  F  S  A  T  F  G  E  N  V  K  A  F  V  T  K  I  V  Q  D  L  F  V  Q  D  Y  N  Q  M  F  V  K  K  E  E  L  S  L  D  S  V  K  Q  Y  K  V  Q  C  P  D  E  L  S  K  I  M  V  I  K  D  R  I  L  E  L  G  Q  K  V  G  Q  T  I  I  F  V  R  T  R  N  S  A  S  M  L  H  K  S  L  V  D  Y  G  Y  E  V  T  T  I  Q  G  A  L  R  Q  E  D  R  D  K  I  I  K  E  F  K  D  G  L  T  Q  I  L  I  S  T  D  L  L  A  R  G  F  D  Q  S  Q  :  V  N  L  V  V  N  Y  D  L  P  V  R  H  E  S  P  T  E  P  D  H  E  V  Y  L  H  R  I  G  R  A  G  R  F  G  R  K   : G  A  I  F  N  L  L  C  S  D  R  D  N  M  L  M  S  K  I  E  N  H  F  N  H  Q  V  A  E  :  I  S  W  N  S  E  E  D  F  E  N  A  L  K  I  A  G  L  L  *  A  E  Y  E  C  W  L  Y  S  *  T  S  S  R  T  T  L  A  G  D  D  I  C  I  V  D  R  A  A  L  R  G  G  F  S  S  *  L  L  S  C  F  T  Y  H  F  *  C  Y  N  F  S  K  T  C  L  I  S  P  C  *  I  E  L  T  L  L  K  G  T  C  K  E  K  Q  L  Y  F  K  H  N  S  A  N  D  *  R  T  S  L  S  S  E  Q  K  Q  Q  P  K  *  P  Q  T  P  V  G  L  K  E  P  M  A  E  I  P  I  T  T  G  N  P  N  R  P  Q  P  L  I  I  C  F  S  S  T  V  L  V  I  C  F  F  Y  L  L  P  L  *  L  Y  Y  F  T  S  Y  L  F  Y  *  V  I  L  V  S  S  G </second_frame>
            <third_frame>   Q  W  P  T  L  P  L  P  P  L  P  P  V  A  S  P  L  L  R  Q  Q  T  H  P  N  P  K  V  G  Q  T  K  P  T  K  S  I  K  L  S  S  L  P  L  L  M  R  T  L  L  P  R  *  I  S  D  L  Y  K  S  M  S  P  K  E  T  T  P  L  S  L  I  R  K  I  P  A  *  K  R :   L  H  L  A  I  L  C  T  N  Q  R  R  D  L  R  I  *  T  Y  L  L  S  Y  *  R  D  Y  M  Y  K  C  S  L  S  V  L  A  R  F  R  K  L  V  C  L  *  F  L  R  L  R  T  R  I  L  L  L  R  L  I  T  V  L  V  K  L  L  A  L  C  L  G  C  *  V  E  L  I  Q  S  L  L  P  L  K  L  S  V  S  V  Q  P  E  N  W  L  F  R :   I  W  K  C  Y  *  R  W  G  S  S  L  A  *  H  Q  S  *  V  S  Q  Q  I  L  P  T  I  F  Q  F  Q  N  V  H  L  L  R  H  K  *  *  L  A  H  L  G  L  *  T  S  G  *  R  E  G  N  W  A  *  V  A  *  K  F  L  C  L  M  K  Q  T  T  C  W  Q  R :   A  V  F  R  M  I  P  *  E  *  *  R  Q  L  L  K  P  A  L  T  A  R :   C  F  S  F  L  Q  L  L  G  K  M  S  K  H  L  *  Q  K  L  F  K  I  F  S  C  K  I  T  T  K  C  L  *  R  K  K  N  F  R  W  I  Q  *  S  S  I  K  Y  S  V  Q  M  N  F  Q  K  L  W  *  L  K  T  E  Y  L  N  *  D  R  R  W  G  K  Q  L  Y  S  F  V  P  E  T  V  Q  V  C  C  I  S  H  W  L  T  M  A  M  K  *  Q  Q  F  K  V  P  L  G  K  K  T  E  T  K  *  S  R  S  S  K  M  D  *  H  K  F  L  Y  Q  L  I  F  L  L  G  D  L  T  N  H  R :   L  I  W  W  L  I  M  T  S  L  *  D  M  R  V  Q  Q  S  Q  I  M  R  Y  T  C  I  G  L  V  E  Q  D  V  L  D  A  K  :  V  R  Y  S  T  C  C  A  V  T  E  T  T  C  *  C  Q  R  L  R  T  I  S  T  I  K  W  L  R :   S  H  G  I  V  K  K  T  L  K  M  L  *  R  *  L  A  C  C  K  P  S  M  N  V  G  Y  I  H  R  L  R  V  E  L  H  W  L  V  M  T  F  V  S  L  T  E  Q  R  S  G  E  A  F  L  L  D  C  S  H  A  S  L  T  I  S  S  V  I  T  S  Q  K  H  A  *  S  P  H  A  K  *  N  *  H  F  *  K  E  H  V  K  K  N  N  Y  I  L  N  T  T  V  Q  M  I  E  E  L  R  Y  P  V  S  K  N  S  S  Q  S  D  L  K  L  R  *  G  S  K  N  Q  W  Q  K  Y  Q  S  Q  P  V  T  R  I  V  P  N  P  L  *  F  V  S  L  L  L  Y  *  L  F  A  S  F  T  Y  C  L  Y  D  S  I  I  S  L  P  I  Y  F  I  K  L  F  W  C  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19029" stop="18790"/>
                    <exon start="18669" stop="18376"/>
                    <exon start="17532" stop="17305"/>
                    <exon start="17017" stop="16952"/>
                    <exon start="15811" stop="15395"/>
                    <exon start="15217" stop="15106"/>
                    <exon start="14995" stop="14910"/>
                    <exon start="14379" stop="14320"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1500</number_coding_nucleotides>
                  <number_encoded_amino_acids>500</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMADASITSTATSSIAASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVDESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTRELAIQNMEVLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTINKWVTGRKLGMSCMKILVFDEADHMLAESGFQDDSIRIMKAIVKASANCQVLLFSATFGENVKAFVTKIVQDLFVQDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKVGQTIIFVRTRNSASMLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLLARGFDQSQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIENHFNHQVAEISWNSEEDFENALKIAGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19030" e_stop="18790"/>
            <exon e_start="18669" e_stop="18376"/>
            <exon e_start="17532" e_stop="17305"/>
            <exon e_start="17017" e_stop="16952"/>
            <exon e_start="15811" e_stop="15395"/>
            <exon e_start="15217" e_stop="15106"/>
            <exon e_start="14995" e_stop="14910"/>
            <exon e_start="14557" e_stop="14553"/>
            <exon e_start="14379" e_stop="13825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.600"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="19030" e_stop="18790" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18669" e_stop="18376" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17532" e_stop="17305" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17017" e_stop="16952" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15811" e_stop="15395" e_length="417"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="15217" e_stop="15106" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="14995" e_stop="14910" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352"/>
          </intron>
          <exon e_serial="8" e_score="0.600">
            <gDNA_exon_boundary e_start="14557" e_stop="14553" e_length="5"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14552" i_stop="14380" i_length="173"/>
          </intron>
          <exon e_serial="9" e_score="0.958">
            <gDNA_exon_boundary e_start="14379" e_stop="13825" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19030" stop="18790"/>
              <exon start="18669" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19027" stop="18790"/>
              <exon start="18669" stop="18436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18790"/>
              <exon start="18669" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18942" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18910" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18898" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18865" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18834" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18830" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18829" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18647" stop="18376"/>
              <exon start="17532" stop="17328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18634" stop="18376"/>
              <exon start="17532" stop="17313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18509" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18412" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="17000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17502" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17400" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17389" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17375" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17348" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17321" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16973" stop="16952"/>
              <exon start="15811" stop="15513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15704" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14557" stop="14553"/>
              <exon start="14379" stop="14303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15704" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15477" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14557" stop="14553"/>
              <exon start="14379" stop="13837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693474" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14972" stop="14910"/>
              <exon start="14557" stop="14553"/>
              <exon start="14379" stop="14077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14220" stop="13825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14123" stop="13825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221167" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG : GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG : AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAG : AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG : GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG : GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG : GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG : ATGTG : ATCTCATGGAATAGTGAAGAAGACTTTGAAAATGCTCTGAAGATAGCTGGCTTGCTGTAAGCCGAGTATGAATGTTGGTTATATTCATAGACTTCGAGTAGAACTACACTGGCTGGTGATGACATTTGTATCGTTGACAGAGCAGCGCTCCGGGGAGGCTTTTCTTCTTGATTGCTCTCATGCTTCACTTACCATTTCTAGTGTTATAACTTCTCAAAAACATGCCTAATCTCCCCATGCTAAATAGAATTAACACTTTTAAAAGGAACATGTAAAGAAAAACAATTATATTTTAAACACAACAGTGCAAATGATTGAAGAACTTCGCTATCCAGTGAGCAAAAACAGCAGCCAAAGTGACCTCAAACTCCGGTAGGGCTCAAAGAACCAATGGCAGAAATACCAATCACAACCGGTAACCCGAATCGTCCCCAACCCCTTATAATTTGTTTCTCTTCTACTGTATTAGTTATTTGCTTCTTTTACTTACTGCCTTTATGACTCTATTATTTCACTTCCTATTTATTTTATTAAGTTATTTTGGTGTCTTCTGGA</gDNA_template>
            <first_frame> S  N  G  R  R  F  H  Y  L  H  C  H  Q  *  H  R  R  F  Y  D  S  K  P  T  R  I  Q  K  L  G  R  P  S  R  R  N  R  S  S  *  A  V  F  R  F  *  *  G  R  C  C  R  D  K  Y  R  I  S  T  S  R  *  V  Q  K  R  Q  L  H  S  L  *  S  G  R  F  Q  H  R  S   : G  Y  I  W  R  Y  Y  V  Q  I  S  E  E  I  *  G  F  E  L  I  S  *  A  I  E  G  I  I  C  T  N  A  V  *  A  S  *  Q  D  S  G  N  *  F  A  Y  D  S  Y  A  S  V  Q  E  S  Y  C  S  G  S  *  R  F  W  *  N  Y  L  L  C  A  W  D  V  E  S  N  *  S  K  A  C  C  P  S  S  S  L  Y  L  S  N  Q  R  I  G  Y  S   : E  Y  G  S  A  I  E  D  G  E  V  H  W  H  N  I  R  V  R  Y  P  S  R  F  C  Q  L  Y  S  N  F  K  T  S  T  C  Y  G  T  S  S  D  W  H  T  W  D  Y  K  Q  V  G  D  G  K  E  T  G  H  E  L  H  E  N  S  C  V  *  *  S  R  P  H  V  G  R   : E  R  F  S  G  *  F  H  K  N  N  E  G  N  C  *  S  Q  R  *  L  P   : G  A  S  L  F  C  N  F  W  G  K  C  Q  S  I  C  D  K  N  C  S  R  S  F  R  A  R  L  Q  P  N  V  C  E  E  R  R  T  F  A  G  F  S  E  A  V  *  S  T  V  S  R  *  T  F  K  N  Y  G  D  *  R  Q  N  T  *  T  R  T  E  G  G  A  N  N  Y  I  R  S  Y  Q  K  Q  C  K  Y  V  A  *  V  I  G  *  L  W  L  *  S  D  N  N  S  R  C  P  *  A  R  R  Q  R  Q  N  N  Q  G  V  Q  R  W  I  D  T  N  S  Y  I  N  *  S  S  C  S  G  I  *  P  I  T   : G  *  F  G  G  *  L  *  P  P  C  E  T  *  E  S  N  R  A  R  S  *  G  I  L  A  S  D  W  *  S  R  T  F  W  T  Q  R :   C  D  I  Q  L  A  V  Q  *  P  R  Q  H  A  N  V  K  D  *  E  P  F  Q  P  S  S  G  *   : D  V  :  I  S  W  N  S  E  E  D  F  E  N  A  L  K  I  A  G  L  L  *  A  E  Y  E  C  W  L  Y  S  *  T  S  S  R  T  T  L  A  G  D  D  I  C  I  V  D  R  A  A  L  R  G  G  F  S  S  *  L  L  S  C  F  T  Y  H  F  *  C  Y  N  F  S  K  T  C  L  I  S  P  C  *  I  E  L  T  L  L  K  G  T  C  K  E  K  Q  L  Y  F  K  H  N  S  A  N  D  *  R  T  S  L  S  S  E  Q  K  Q  Q  P  K  *  P  Q  T  P  V  G  L  K  E  P  M  A  E  I  P  I  T  T  G  N  P  N  R  P  Q  P  L  I  I  C  F  S  S  T  V  L  V  I  C  F  F  Y  L  L  P  L  *  L  Y  Y  F  T  S  Y  L  F  Y  *  V  I  L  V  S  S  G </first_frame>
            <second_frame>  P  M  A  D  A  S  I  T  S  T  A  T  S  S  I  A  A  S  T  T  A  N  P  P  E  S  K  S  W  A  D  Q  A  D  E  I  D  Q  A  E  Q  S  S  A  S  N  E  D  A  A  A  E  I  N  I  G  S  L  Q  V  D  E  S  K  R  D  N  S  T  L  S  D  P  E  D  S  S  I  E  A  :  V  T  S  G  D  T  M  Y  K  S  A  K  R  F  E  D  L  N  L  S  P  E  L  L  K  G  L  Y  V  Q  M  Q  F  E  R  P  S  K  I  Q  E  I  S  L  P  M  I  L  T  P  P  Y  K  N  L  I  A  Q  A  H  N  G  S  G  K  T  T  C  F  V  L  G  M  L  S  R  I  D  P  K  L  A  A  P  Q  A  L  C  I  C  P  T  R  E  L  A  I  Q  :  N  M  E  V  L  L  K  M  G  K  F  T  G  I  T  S  E  L  G  I  P  A  D  S  A  N  Y  I  P  I  S  K  R  P  P  V  T  A  Q  V  V  I  G  T  P  G  T  I  N  K  W  V  T  G  R  K  L  G  M  S  C  M  K  I  L  V  F  D  E  A  D  H  M  L  A  E  :  S  G  F  Q  D  D  S  I  R  I  M  K  A  I  V  K  A  S  A  N  C  Q  :  V  L  L  F  S  A  T  F  G  E  N  V  K  A  F  V  T  K  I  V  Q  D  L  F  V  Q  D  Y  N  Q  M  F  V  K  K  E  E  L  S  L  D  S  V  K  Q  Y  K  V  Q  C  P  D  E  L  S  K  I  M  V  I  K  D  R  I  L  E  L  G  Q  K  V  G  Q  T  I  I  F  V  R  T  R  N  S  A  S  M  L  H  K  S  L  V  D  Y  G  Y  E  V  T  T  I  Q  G  A  L  R  Q  E  D  R  D  K  I  I  K  E  F  K  D  G  L  T  Q  I  L  I  S  T  D  L  L  A  R  G  F  D  Q  S  Q  :  V  N  L  V  V  N  Y  D  L  P  V  R  H  E  S  P  T  E  P  D  H  E  V  Y  L  H  R  I  G  R  A  G  R  F  G  R  K   : G  A  I  F  N  L  L  C  S  D  R  D  N  M  L  M  S  K  I  E  N  H  F  N  H  Q  V  A  E  :  M  * :   S  H  G  I  V  K  K  T  L  K  M  L  *  R  *  L  A  C  C  K  P  S  M  N  V  G  Y  I  H  R  L  R  V  E  L  H  W  L  V  M  T  F  V  S  L  T  E  Q  R  S  G  E  A  F  L  L  D  C  S  H  A  S  L  T  I  S  S  V  I  T  S  Q  K  H  A  *  S  P  H  A  K  *  N  *  H  F  *  K  E  H  V  K  K  N  N  Y  I  L  N  T  T  V  Q  M  I  E  E  L  R  Y  P  V  S  K  N  S  S  Q  S  D  L  K  L  R  *  G  S  K  N  Q  W  Q  K  Y  Q  S  Q  P  V  T  R  I  V  P  N  P  L  *  F  V  S  L  L  L  Y  *  L  F  A  S  F  T  Y  C  L  Y  D  S  I  I  S  L  P  I  Y  F  I  K  L  F  W  C  L  L   </second_frame>
            <third_frame>   Q  W  P  T  L  P  L  P  P  L  P  P  V  A  S  P  L  L  R  Q  Q  T  H  P  N  P  K  V  G  Q  T  K  P  T  K  S  I  K  L  S  S  L  P  L  L  M  R  T  L  L  P  R  *  I  S  D  L  Y  K  S  M  S  P  K  E  T  T  P  L  S  L  I  R  K  I  P  A  *  K  R :   L  H  L  A  I  L  C  T  N  Q  R  R  D  L  R  I  *  T  Y  L  L  S  Y  *  R  D  Y  M  Y  K  C  S  L  S  V  L  A  R  F  R  K  L  V  C  L  *  F  L  R  L  R  T  R  I  L  L  L  R  L  I  T  V  L  V  K  L  L  A  L  C  L  G  C  *  V  E  L  I  Q  S  L  L  P  L  K  L  S  V  S  V  Q  P  E  N  W  L  F  R :   I  W  K  C  Y  *  R  W  G  S  S  L  A  *  H  Q  S  *  V  S  Q  Q  I  L  P  T  I  F  Q  F  Q  N  V  H  L  L  R  H  K  *  *  L  A  H  L  G  L  *  T  S  G  *  R  E  G  N  W  A  *  V  A  *  K  F  L  C  L  M  K  Q  T  T  C  W  Q  R :   A  V  F  R  M  I  P  *  E  *  *  R  Q  L  L  K  P  A  L  T  A  R :   C  F  S  F  L  Q  L  L  G  K  M  S  K  H  L  *  Q  K  L  F  K  I  F  S  C  K  I  T  T  K  C  L  *  R  K  K  N  F  R  W  I  Q  *  S  S  I  K  Y  S  V  Q  M  N  F  Q  K  L  W  *  L  K  T  E  Y  L  N  *  D  R  R  W  G  K  Q  L  Y  S  F  V  P  E  T  V  Q  V  C  C  I  S  H  W  L  T  M  A  M  K  *  Q  Q  F  K  V  P  L  G  K  K  T  E  T  K  *  S  R  S  S  K  M  D  *  H  K  F  L  Y  Q  L  I  F  L  L  G  D  L  T  N  H  R :   L  I  W  W  L  I  M  T  S  L  *  D  M  R  V  Q  Q  S  Q  I  M  R  Y  T  C  I  G  L  V  E  Q  D  V  L  D  A  K  :  V  R  Y  S  T  C  C  A  V  T  E  T  T  C  *  C  Q  R  L  R  T  I  S  T  I  K  W  L  R :   C   : D  L  M  E  *  *  R  R  L  *  K  C  S  E  D  S  W  L  A  V  S  R  V  *  M  L  V  I  F  I  D  F  E  *  N  Y  T  G  W  *  *  H  L  Y  R  *  Q  S  S  A  P  G  R  L  F  F  L  I  A  L  M  L  H  L  P  F  L  V  L  *  L  L  K  N  M  P  N  L  P  M  L  N  R  I  N  T  F  K  R  N  M  *  R  K  T  I  I  F  *  T  Q  Q  C  K  *  L  K  N  F  A  I  Q  *  A  K  T  A  A  K  V  T  S  N  S  G  R  A  Q  R  T  N  G  R  N  T  N  H  N  R  *  P  E  S  S  P  T  P  Y  N  L  F  L  F  Y  C  I  S  Y  L  L  L  L  L  T  A  F  M  T  L  L  F  H  F  L  F  I  L  L  S  Y  F  G  V  F  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19029" stop="18790"/>
                    <exon start="18669" stop="18376"/>
                    <exon start="17532" stop="17305"/>
                    <exon start="17017" stop="16952"/>
                    <exon start="15811" stop="15395"/>
                    <exon start="15217" stop="15106"/>
                    <exon start="14995" stop="14910"/>
                    <exon start="14557" stop="14379"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMADASITSTATSSIAASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVDESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTRELAIQNMEVLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTINKWVTGRKLGMSCMKILVFDEADHMLAESGFQDDSIRIMKAIVKASANCQVLLFSATFGENVKAFVTKIVQDLFVQDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKVGQTIIFVRTRNSASMLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLLARGFDQSQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIENHFNHQVAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="19030" e_stop="18790"/>
            <exon e_start="18669" e_stop="18376"/>
            <exon e_start="17532" e_stop="17305"/>
            <exon e_start="17017" e_stop="16952"/>
            <exon e_start="15811" e_stop="15395"/>
            <exon e_start="15217" e_stop="15106"/>
            <exon e_start="14995" e_stop="14910"/>
            <exon e_start="14557" e_stop="14416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="0.973"/>
          <exon-intron don_prob="1.000" acc_prob="0.822" e_score="0.988"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="19030" e_stop="18790" e_length="241"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18669" e_stop="18376" e_length="294"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18375" i_stop="17533" i_length="843"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17532" e_stop="17305" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.968" acc_prob="0.983">
            <gDNA_intron_boundary i_start="17304" i_stop="17018" i_length="287"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17017" e_stop="16952" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16951" i_stop="15812" i_length="1140"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15811" e_stop="15395" e_length="417"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15394" i_stop="15218" i_length="177"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="15217" e_stop="15106" e_length="112"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="15105" i_stop="14996" i_length="110"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="14995" e_stop="14910" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.822">
            <gDNA_intron_boundary i_start="14909" i_stop="14558" i_length="352"/>
          </intron>
          <exon e_serial="8" e_score="0.887">
            <gDNA_exon_boundary e_start="14557" e_stop="14416" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19030" stop="18790"/>
              <exon start="18669" stop="18567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19027" stop="18790"/>
              <exon start="18669" stop="18436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18790"/>
              <exon start="18669" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18942" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18910" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18898" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18865" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18834" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200052" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18833" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18830" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18829" stop="18790"/>
              <exon start="18669" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374891" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18647" stop="18376"/>
              <exon start="17532" stop="17328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18634" stop="18376"/>
              <exon start="17532" stop="17313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18509" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18412" stop="18376"/>
              <exon start="17532" stop="17305"/>
              <exon start="17017" stop="17000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17502" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17400" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17389" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17375" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17348" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17333" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17321" stop="17305"/>
              <exon start="17017" stop="16952"/>
              <exon start="15811" stop="15582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16973" stop="16952"/>
              <exon start="15811" stop="15513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15704" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15568" stop="15395"/>
              <exon start="15217" stop="15106"/>
              <exon start="14995" stop="14910"/>
              <exon start="14557" stop="14416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200398" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCAATGGCCGACGCTTCCATTACCTCCACTGCCACCAGTAGCATCGCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG : GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTGTCCAACCAGAGAATTGGCTATTCAG : AATATGGAAGTGCTATTGAAGATGGGGAAGTTCACTGGCATAACATCAGAGTTAGGTATCCCAGCAGATTCTGCCAACTATATTCCAATTTCAAAACGTCCACCTGTTACGGCACAAGTAGTGATTGGCACACCTGGGACTATAAACAAGTGGGTGACGGGAAGGAAACTGGGCATGAGTTGCATGAAAATTCTTGTGTTTGATGAAGCAGACCACATGTTGGCAGAG : AGCGGTTTTCAGGATGATTCCATAAGAATAATGAAGGCAATTGTTAAAGCCAGCGCTAACTGCCAG : GTGCTTCTCTTTTCTGCAACTTTTGGGGAAAATGTCAAAGCATTTGTGACAAAAATTGTTCAAGATCTTTTCGTGCAAGATTACAACCAAATGTTTGTGAAGAAAGAAGAACTTTCGCTGGATTCAGTGAAGCAGTATAAAGTACAGTGTCCAGATGAACTTTCAAAAATTATGGTGATTAAAGACAGAATACTTGAACTAGGACAGAAGGTGGGGCAAACAATTATATTCGTTCGTACCAGAAACAGTGCAAGTATGTTGCATAAGTCATTGGTTGACTATGGCTATGAAGTGACAACAATTCAAGGTGCCCTTAGGCAAGAAGACAGAGACAAAATAATCAAGGAGTTCAAAGATGGATTGACACAAATTCTTATATCAACTGATCTTCTTGCTCGGGGATTTGACCAATCACAG : GTTAATTTGGTGGTTAATTATGACCTCCCTGTGAGACATGAGAGTCCAACAGAGCCAGATCATGAGGTATACTTGCATCGGATTGGTAGAGCAGGACGTTTTGGACGCAAAG : GTGCGATATTCAACTTGCTGTGCAGTGACCGAGACAACATGCTAATGTCAAAGATTGAGAACCATTTCAACCATCAAGTGGCTGAG : ATGTGATTCAAGATAAAGATAAGATGAACAAAGCATTTAGGATTATGGTCGAATGCAACATTTGTAGCATGCTGCTATTCACAGGAAAAAGGATCTAGGCAATATCTAGTTCAATTTGGTATTTATCCATGGGACATAACAT</gDNA_template>
            <first_frame> S  N  G  R  R  F  H  Y  L  H  C  H  Q  *  H  R  R  F  Y  D  S  K  P  T  R  I  Q  K  L  G  R  P  S  R  R  N  R  S  S  *  A  V  F  R  F  *  *  G  R  C  C  R  D  K  Y  R  I  S  T  S  R  *  V  Q  K  R  Q  L  H  S  L  *  S  G  R  F  Q  H  R  S   : G  Y  I  W  R  Y  Y  V  Q  I  S  E  E  I  *  G  F  E  L  I  S  *  A  I  E  G  I  I  C  T  N  A  V  *  A  S  *  Q  D  S  G  N  *  F  A  Y  D  S  Y  A  S  V  Q  E  S  Y  C  S  G  S  *  R  F  W  *  N  Y  L  L  C  A  W  D  V  E  S  N  *  S  K  A  C  C  P  S  S  S  L  Y  L  S  N  Q  R  I  G  Y  S   : E  Y  G  S  A  I  E  D  G  E  V  H  W  H  N  I  R  V  R  Y  P  S  R  F  C  Q  L  Y  S  N  F  K  T  S  T  C  Y  G  T  S  S  D  W  H  T  W  D  Y  K  Q  V  G  D  G  K  E  T  G  H  E  L  H  E  N  S  C  V  *  *  S  R  P  H  V  G  R   : E  R  F  S  G  *  F  H  K  N  N  E  G  N  C  *  S  Q  R  *  L  P   : G  A  S  L  F  C  N  F  W  G  K  C  Q  S  I  C  D  K  N  C  S  R  S  F  R  A  R  L  Q  P  N  V  C  E  E  R  R  T  F  A  G  F  S  E  A  V  *  S  T  V  S  R  *  T  F  K  N  Y  G  D  *  R  Q  N  T  *  T  R  T  E  G  G  A  N  N  Y  I  R  S  Y  Q  K  Q  C  K  Y  V  A  *  V  I  G  *  L  W  L  *  S  D  N  N  S  R  C  P  *  A  R  R  Q  R  Q  N  N  Q  G  V  Q  R  W  I  D  T  N  S  Y  I  N  *  S  S  C  S  G  I  *  P  I  T   : G  *  F  G  G  *  L  *  P  P  C  E  T  *  E  S  N  R  A  R  S  *  G  I  L  A  S  D  W  *  S  R  T  F  W  T  Q  R :   C  D  I  Q  L  A  V  Q  *  P  R  Q  H  A  N  V  K  D  *  E  P  F  Q  P  S  S  G  *   : D  V  I  Q  D  K  D  K  M  N  K  A  F  R  I  M  V  E  C  N  I  C  S  M  L  L  F  T  G  K  R  I  *  A  I  S  S  S  I  W  Y  L  S  M  G  H  N   </first_frame>
            <second_frame>  P  M  A  D  A  S  I  T  S  T  A  T  S  S  I  A  A  S  T  T  A  N  P  P  E  S  K  S  W  A  D  Q  A  D  E  I  D  Q  A  E  Q  S  S  A  S  N  E  D  A  A  A  E  I  N  I  G  S  L  Q  V  D  E  S  K  R  D  N  S  T  L  S  D  P  E  D  S  S  I  E  A  :  V  T  S  G  D  T  M  Y  K  S  A  K  R  F  E  D  L  N  L  S  P  E  L  L  K  G  L  Y  V  Q  M  Q  F  E  R  P  S  K  I  Q  E  I  S  L  P  M  I  L  T  P  P  Y  K  N  L  I  A  Q  A  H  N  G  S  G  K  T  T  C  F  V  L  G  M  L  S  R  I  D  P  K  L  A  A  P  Q  A  L  C  I  C  P  T  R  E  L  A  I  Q  :  N  M  E  V  L  L  K  M  G  K  F  T  G  I  T  S  E  L  G  I  P  A  D  S  A  N  Y  I  P  I  S  K  R  P  P  V  T  A  Q  V  V  I  G  T  P  G  T  I  N  K  W  V  T  G  R  K  L  G  M  S  C  M  K  I  L  V  F  D  E  A  D  H  M  L  A  E  :  S  G  F  Q  D  D  S  I  R  I  M  K  A  I  V  K  A  S  A  N  C  Q  :  V  L  L  F  S  A  T  F  G  E  N  V  K  A  F  V  T  K  I  V  Q  D  L  F  V  Q  D  Y  N  Q  M  F  V  K  K  E  E  L  S  L  D  S  V  K  Q  Y  K  V  Q  C  P  D  E  L  S  K  I  M  V  I  K  D  R  I  L  E  L  G  Q  K  V  G  Q  T  I  I  F  V  R  T  R  N  S  A  S  M  L  H  K  S  L  V  D  Y  G  Y  E  V  T  T  I  Q  G  A  L  R  Q  E  D  R  D  K  I  I  K  E  F  K  D  G  L  T  Q  I  L  I  S  T  D  L  L  A  R  G  F  D  Q  S  Q  :  V  N  L  V  V  N  Y  D  L  P  V  R  H  E  S  P  T  E  P  D  H  E  V  Y  L  H  R  I  G  R  A  G  R  F  G  R  K   : G  A  I  F  N  L  L  C  S  D  R  D  N  M  L  M  S  K  I  E  N  H  F  N  H  Q  V  A  E  :  M  *  F  K  I  K  I  R  *  T  K  H  L  G  L  W  S  N  A  T  F  V  A  C  C  Y  S  Q  E  K  G  S  R  Q  Y  L  V  Q  F  G  I  Y  P  W  D  I  T  </second_frame>
            <third_frame>   Q  W  P  T  L  P  L  P  P  L  P  P  V  A  S  P  L  L  R  Q  Q  T  H  P  N  P  K  V  G  Q  T  K  P  T  K  S  I  K  L  S  S  L  P  L  L  M  R  T  L  L  P  R  *  I  S  D  L  Y  K  S  M  S  P  K  E  T  T  P  L  S  L  I  R  K  I  P  A  *  K  R :   L  H  L  A  I  L  C  T  N  Q  R  R  D  L  R  I  *  T  Y  L  L  S  Y  *  R  D  Y  M  Y  K  C  S  L  S  V  L  A  R  F  R  K  L  V  C  L  *  F  L  R  L  R  T  R  I  L  L  L  R  L  I  T  V  L  V  K  L  L  A  L  C  L  G  C  *  V  E  L  I  Q  S  L  L  P  L  K  L  S  V  S  V  Q  P  E  N  W  L  F  R :   I  W  K  C  Y  *  R  W  G  S  S  L  A  *  H  Q  S  *  V  S  Q  Q  I  L  P  T  I  F  Q  F  Q  N  V  H  L  L  R  H  K  *  *  L  A  H  L  G  L  *  T  S  G  *  R  E  G  N  W  A  *  V  A  *  K  F  L  C  L  M  K  Q  T  T  C  W  Q  R :   A  V  F  R  M  I  P  *  E  *  *  R  Q  L  L  K  P  A  L  T  A  R :   C  F  S  F  L  Q  L  L  G  K  M  S  K  H  L  *  Q  K  L  F  K  I  F  S  C  K  I  T  T  K  C  L  *  R  K  K  N  F  R  W  I  Q  *  S  S  I  K  Y  S  V  Q  M  N  F  Q  K  L  W  *  L  K  T  E  Y  L  N  *  D  R  R  W  G  K  Q  L  Y  S  F  V  P  E  T  V  Q  V  C  C  I  S  H  W  L  T  M  A  M  K  *  Q  Q  F  K  V  P  L  G  K  K  T  E  T  K  *  S  R  S  S  K  M  D  *  H  K  F  L  Y  Q  L  I  F  L  L  G  D  L  T  N  H  R :   L  I  W  W  L  I  M  T  S  L  *  D  M  R  V  Q  Q  S  Q  I  M  R  Y  T  C  I  G  L  V  E  Q  D  V  L  D  A  K  :  V  R  Y  S  T  C  C  A  V  T  E  T  T  C  *  C  Q  R  L  R  T  I  S  T  I  K  W  L  R :   C  D  S  R  *  R  *  D  E  Q  S  I  *  D  Y  G  R  M  Q  H  L  *  H  A  A  I  H  R  K  K  D  L  G  N  I  *  F  N  L  V  F  I  H  G  T  *  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19029" stop="18790"/>
                    <exon start="18669" stop="18376"/>
                    <exon start="17532" stop="17305"/>
                    <exon start="17017" stop="16952"/>
                    <exon start="15811" stop="15395"/>
                    <exon start="15217" stop="15106"/>
                    <exon start="14995" stop="14910"/>
                    <exon start="14557" stop="14552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PMADASITSTATSSIAASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVDESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCICPTRELAIQNMEVLLKMGKFTGITSELGIPADSANYIPISKRPPVTAQVVIGTPGTINKWVTGRKLGMSCMKILVFDEADHMLAESGFQDDSIRIMKAIVKASANCQVLLFSATFGENVKAFVTKIVQDLFVQDYNQMFVKKEELSLDSVKQYKVQCPDELSKIMVIKDRILELGQKVGQTIIFVRTRNSASMLHKSLVDYGYEVTTIQGALRQEDRDKIIKEFKDGLTQILISTDLLARGFDQSQVNLVVNYDLPVRHESPTEPDHEVYLHRIGRAGRFGRKGAIFNLLCSDRDNMLMSKIENHFNHQVAEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21406" PGL_stop="22325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21406" e_stop="21634"/>
            <exon e_start="21716" e_stop="21790"/>
            <exon e_start="21873" e_stop="22325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="21406" e_stop="21634" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="21635" i_stop="21715" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21716" e_stop="21790" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21791" i_stop="21872" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="21873" e_stop="22325" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21406" stop="21634"/>
              <exon start="21716" stop="21790"/>
              <exon start="21873" stop="22325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAGCTGCTTCAGTTAATCTAGGGGGAAAACTGATTTTTGTTTAGGAGAAGGAAGAAATTGGAATGGCGAGTGATTGGAGGAAATCGGTGGGTAATGTTAGATCCTTCGTCGGAAACTTAACCGGAGGTTTAAGGGGTGGAAGCAATTTGGCATCTTGGGTTGTCGCCGGTACTTTAGCTTACTTTCTATGGGTCAAGCCATCTCAGGAACTCAAGAGGCAGCAAGAG : GAAAAGGCCGCTTTGGCGGCTGCATCAGATGCTTATCGCTATGTTGAGAAGCGAAAACCCGTTCCTGATCCGCAG : GAAACTGGATTGATATACGGTAACAAGAACAAAGCTAAAAGAGCTGAAGAATAGAGCTTCGCGAGAATTCCATGCCGTTCTGTAAGTTTAATGAATGCTCAGGGAATTGTCTGCTCATTGGCGTATAGGGACCTTATATACTTATACTTCTGAACTCATTTTCTTTATAGGGCCAAATAATTATCTATACCTAGAAAAGGAAATCATGTAAGCTTTAAGTTTTTGTGGATATAATGTAGCATGTTTTTTGTTTTCAAGGTGAGGTTCTTGAATAGCATTTACTGGTTTATCAGCATGATGTTTTATTTCCTTTTATCTTTGCTCTACATGAACATTTTTGTTAATTGTTCAAAGTTTCTATGTATTGGTTCGACTAGCTTCTATTCTTATGTTAATTACTCCATAAGGATTTTGTATTAACAGTCATCAAATTTCAAGAATCTTTCTCTTTTG</gDNA_template>
            <first_frame> M  S  C  F  S  *  S  R  G  K  T  D  F  C  L  G  E  G  R  N  W  N  G  E  *  L  E  E  I  G  G  *  C  *  I  L  R  R  K  L  N  R  R  F  K  G  W  K  Q  F  G  I  L  G  C  R  R  Y  F  S  L  L  S  M  G  Q  A  I  S  G  T  Q  E  A  A  R   : G  K  G  R  F  G  G  C  I  R  C  L  S  L  C  *  E  A  K  T  R  S  *  S  A   : G  N  W  I  D  I  R  *  Q  E  Q  S  *  K  S  *  R  I  E  L  R  E  N  S  M  P  F  C  K  F  N  E  C  S  G  N  C  L  L  I  G  V  *  G  P  Y  I  L  I  L  L  N  S  F  S  L  *  G  Q  I  I  I  Y  T  *  K  R  K  S  C  K  L  *  V  F  V  D  I  M  *  H  V  F  C  F  Q  G  E  V  L  E  *  H  L  L  V  Y  Q  H  D  V  L  F  P  F  I  F  A  L  H  E  H  F  C  *  L  F  K  V  S  M  Y  W  F  D  *  L  L  F  L  C  *  L  L  H  K  D  F  V  L  T  V  I  K  F  Q  E  S  F  S  F  </first_frame>
            <second_frame>  *  A  A  S  V  N  L  G  G  K  L  I  F  V  *  E  K  E  E  I  G  M  A  S  D  W  R  K  S  V  G  N  V  R  S  F  V  G  N  L  T  G  G  L  R  G  G  S  N  L  A  S  W  V  V  A  G  T  L  A  Y  F  L  W  V  K  P  S  Q  E  L  K  R  Q  Q  E  :  E  K  A  A  L  A  A  A  S  D  A  Y  R  Y  V  E  K  R  K  P  V  P  D  P  Q  :  E  T  G  L  I  Y  G  N  K  N  K  A  K  R  A  E  E  *  S  F  A  R  I  P  C  R  S  V  S  L  M  N  A  Q  G  I  V  C  S  L  A  Y  R  D  L  I  Y  L  Y  F  *  T  H  F  L  Y  R  A  K  *  L  S  I  P  R  K  G  N  H  V  S  F  K  F  L  W  I  *  C  S  M  F  F  V  F  K  V  R  F  L  N  S  I  Y  W  F  I  S  M  M  F  Y  F  L  L  S  L  L  Y  M  N  I  F  V  N  C  S  K  F  L  C  I  G  S  T  S  F  Y  S  Y  V  N  Y  S  I  R  I  L  Y  *  Q  S  S  N  F  K  N  L  S  L  L </second_frame>
            <third_frame>   E  L  L  Q  L  I  *  G  E  N  *  F  L  F  R  R  R  K  K  L  E  W  R  V  I  G  G  N  R  W  V  M  L  D  P  S  S  E  T  *  P  E  V  *  G  V  E  A  I  W  H  L  G  L  S  P  V  L  *  L  T  F  Y  G  S  S  H  L  R  N  S  R  G  S  K  R :   K  R  P  L  W  R  L  H  Q  M  L  I  A  M  L  R  S  E  N  P  F  L  I  R  R :   K  L  D  *  Y  T  V  T  R  T  K  L  K  E  L  K  N  R  A  S  R  E  F  H  A  V  L  *  V  *  *  M  L  R  E  L  S  A  H  W  R  I  G  T  L  Y  T  Y  T  S  E  L  I  F  F  I  G  P  N  N  Y  L  Y  L  E  K  E  I  M  *  A  L  S  F  C  G  Y  N  V  A  C  F  L  F  S  R  *  G  S  *  I  A  F  T  G  L  S  A  *  C  F  I  S  F  Y  L  C  S  T  *  T  F  L  L  I  V  Q  S  F  Y  V  L  V  R  L  A  S  I  L  M  L  I  T  P  *  G  F  C  I  N  S  H  Q  I  S  R  I  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21452" stop="21634"/>
                    <exon start="21716" stop="21790"/>
                    <exon start="21873" stop="21926"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKEEIGMASDWRKSVGNVRSFVGNLTGGLRGGSNLASWVVAGTLAYFLWVKPSQELKRQQEEKAALAAASDAYRYVEKRKPVPDPQETGLIYGNKNKAKRAEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27703" PGL_stop="28235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27703" e_stop="28235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27703" e_stop="28235" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27703" stop="28235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATCTGACAGTGATGCTGGTGCAAGTTCTGGAGGCGGAGCTCCCAATCGCCGTCCTCGAGGCCGTCCGCCTGGATCTAAAAATAAGCCCAAGCCTCCAATCATCGTGACGAGAGATACGCCTAACGCACTCCGATCTCACGTGCTTGAAGTTTCGACCGATGTTGATATCATGGAAAGTATCTCCAATTACGCAAGGCGGAGAGGGAGAGGTGTTTGTATTCTTAGTGGTAGCGGCACAGTTACCAACGTCAACCTTCGTCAGCCTGCTGCAAGTGTAGTCACACTCCACGGACGTTTCGAAATACTTAGCCTCTCAGGTACGGTGCTTCCTCCGCCTGCACCGCCCGCCTCCAGTGGGATCTCTATATTTTTATCAGGTGGACAAGGACAAGTGGTTGGAGGATCCGTTGTAGGGCCTTTGATCGCATCAGGTCCAGTCGTCTTAATGGCTGCCTCTTTTGCTAATGCTGTATTTGAACGACTTCCCTTGGAGGAAGATGATGAGGCTCCTGCTAATGTTCCTACTACAC</gDNA_template>
            <first_frame> *  I  *  Q  *  C  W  C  K  F  W  R  R  S  S  Q  S  P  S  S  R  P  S  A  W  I  *  K  *  A  Q  A  S  N  H  R  D  E  R  Y  A  *  R  T  P  I  S  R  A  *  S  F  D  R  C  *  Y  H  G  K  Y  L  Q  L  R  K  A  E  R  E  R  C  L  Y  S  *  W  *  R  H  S  Y  Q  R  Q  P  S  S  A  C  C  K  C  S  H  T  P  R  T  F  R  N  T  *  P  L  R  Y  G  A  S  S  A  C  T  A  R  L  Q  W  D  L  Y  I  F  I  R  W  T  R  T  S  G  W  R  I  R  C  R  A  F  D  R  I  R  S  S  R  L  N  G  C  L  F  C  *  C  C  I  *  T  T  S  L  G  G  R  *  *  G  S  C  *  C  S  Y  Y   </first_frame>
            <second_frame>  E  S  D  S  D  A  G  A  S  S  G  G  G  A  P  N  R  R  P  R  G  R  P  P  G  S  K  N  K  P  K  P  P  I  I  V  T  R  D  T  P  N  A  L  R  S  H  V  L  E  V  S  T  D  V  D  I  M  E  S  I  S  N  Y  A  R  R  R  G  R  G  V  C  I  L  S  G  S  G  T  V  T  N  V  N  L  R  Q  P  A  A  S  V  V  T  L  H  G  R  F  E  I  L  S  L  S  G  T  V  L  P  P  P  A  P  P  A  S  S  G  I  S  I  F  L  S  G  G  Q  G  Q  V  V  G  G  S  V  V  G  P  L  I  A  S  G  P  V  V  L  M  A  A  S  F  A  N  A  V  F  E  R  L  P  L  E  E  D  D  E  A  P  A  N  V  P  T  T  </second_frame>
            <third_frame>   N  L  T  V  M  L  V  Q  V  L  E  A  E  L  P  I  A  V  L  E  A  V  R  L  D  L  K  I  S  P  S  L  Q  S  S  *  R  E  I  R  L  T  H  S  D  L  T  C  L  K  F  R  P  M  L  I  S  W  K  V  S  P  I  T  Q  G  G  E  G  E  V  F  V  F  L  V  V  A  A  Q  L  P  T  S  T  F  V  S  L  L  Q  V  *  S  H  S  T  D  V  S  K  Y  L  A  S  Q  V  R  C  F  L  R  L  H  R  P  P  P  V  G  S  L  Y  F  Y  Q  V  D  K  D  K  W  L  E  D  P  L  *  G  L  *  S  H  Q  V  Q  S  S  *  W  L  P  L  L  L  M  L  Y  L  N  D  F  P  W  R  K  M  M  R  L  L  L  M  F  L  L  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27704" stop="28234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESDSDAGASSGGGAPNRRPRGRPPGSKNKPKPPIIVTRDTPNALRSHVLEVSTDVDIMESISNYARRRGRGVCILSGSGTVTNVNLRQPAASVVTLHGRFEILSLSGTVLPPPAPPASSGISIFLSGGQGQVVGGSVVGPLIASGPVVLMAASFANAVFERLPLEEDDEAPANVPTT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="28416" PGL_stop="28735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28416" e_stop="28735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28416" e_stop="28735" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28416" stop="28735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28416" stop="28732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28416" stop="28730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28416" stop="28728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGAAGGAAATATGGCTTTTGGGAATAATTACTCATTCTCAGCTGAGTTGCTTGGATGGGGTGGCAATGCTGCAAATGAAAGGCCCCCATTTTAGCTAGTATATACGATAGTGATCATGAGATTTTCAAATTACTCAAAATGTTAAGAGATAGCTGGTGCAGAAAATAGCCAGTTGTGGCTAACAAACACTACTTTTTTTTTTCTAATTCCACCAACGGAAGAAAACTTGAAAGCAAGGTGAGTTTCATGTATGTATATATATATATATAGTGTTTGTACAAGTACTATATAACAATGCTCATCTTCATTGTCTAAACTT</gDNA_template>
            <first_frame> P  K  E  I  W  L  L  G  I  I  T  H  S  Q  L  S  C  L  D  G  V  A  M  L  Q  M  K  G  P  H  F  S  *  Y  I  R  *  *  S  *  D  F  Q  I  T  Q  N  V  K  R  *  L  V  Q  K  I  A  S  C  G  *  Q  T  L  L  F  F  F  *  F  H  Q  R  K  K  T  *  K  Q  G  E  F  H  V  C  I  Y  I  Y  I  V  F  V  Q  V  L  Y  N  N  A  H  L  H  C  L  N   </first_frame>
            <second_frame>  R  R  K  Y  G  F  W  E  *  L  L  I  L  S  *  V  A  W  M  G  W  Q  C  C  K  *  K  A  P  I  L  A  S  I  Y  D  S  D  H  E  I  F  K  L  L  K  M  L  R  D  S  W  C  R  K  *  P  V  V  A  N  K  H  Y  F  F  F  S  N  S  T  N  G  R  K  L  E  S  K  V  S  F  M  Y  V  Y  I  Y  I  *  C  L  Y  K  Y  Y  I  T  M  L  I  F  I  V  *  T  </second_frame>
            <third_frame>   E  G  N  M  A  F  G  N  N  Y  S  F  S  A  E  L  L  G  W  G  G  N  A  A  N  E  R  P  P  F  *  L  V  Y  T  I  V  I  M  R  F  S  N  Y  S  K  C  *  E  I  A  G  A  E  N  S  Q  L  W  L  T  N  T  T  F  F  F  L  I  P  P  T  E  E  N  L  K  A  R  *  V  S  C  M  Y  I  Y  I  Y  S  V  C  T  S  T  I  *  Q  C  S  S  S  L  S  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="39406" PGL_stop="29888"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39406" e_stop="39367"/>
            <exon e_start="35363" e_stop="35318"/>
            <exon e_start="34551" e_stop="34462"/>
            <exon e_start="33102" e_stop="32980"/>
            <exon e_start="32875" e_stop="32824"/>
            <exon e_start="32592" e_stop="32520"/>
            <exon e_start="32049" e_stop="31983"/>
            <exon e_start="31901" e_stop="31851"/>
            <exon e_start="30935" e_stop="30843"/>
            <exon e_start="30284" e_stop="29888"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.198" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.861" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39406" e_stop="39367" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="39366" i_stop="35364" i_length="4003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35363" e_stop="35318" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35317" i_stop="34552" i_length="766"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34551" e_stop="34462" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34461" i_stop="33103" i_length="1359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33102" e_stop="32980" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32979" i_stop="32876" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32875" e_stop="32824" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32592" e_stop="32520" e_length="73"/>
          </exon>
          <intron i_serial="6" don_prob="0.198" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32519" i_stop="32050" i_length="470"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32049" e_stop="31983" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.861">
            <gDNA_intron_boundary i_start="31982" i_stop="31902" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="31901" e_stop="31851" e_length="51"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="31850" i_stop="30936" i_length="915"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="30935" e_stop="30843" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="30842" i_stop="30285" i_length="558"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="30284" e_stop="29888" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39406" stop="39367"/>
              <exon start="35363" stop="35318"/>
              <exon start="34551" stop="34462"/>
              <exon start="33102" stop="32980"/>
              <exon start="32875" stop="32824"/>
              <exon start="32592" stop="32520"/>
              <exon start="32049" stop="31983"/>
              <exon start="31901" stop="31851"/>
              <exon start="30935" stop="30843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32860" stop="32824"/>
              <exon start="32592" stop="32520"/>
              <exon start="32049" stop="31983"/>
              <exon start="31901" stop="31851"/>
              <exon start="30935" stop="30843"/>
              <exon start="30284" stop="29888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAA : GACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAG : GCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAG : GGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAG : GACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG : GTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCA : GTTGGTTACAACAGTTGTTGATTTGGGACCTCCAGCTGATTGGGTAAAAATCAACGTGCGAGAAACA : AAAGATTGTTTTGAGATCTATGCTCTGGTGCCTGGGCTTTTGAGAGAGGAG : GTGCGCGTTCAATCTGATCCTGCTGGCCGTCTGGTCATAACTGGTCAGCCGGAACAACTTGACAACCCTTGGGGTATTACCGCCTTCAAAAAG : GTAGTTAGCCTGCCAGCTAGAATCGATCCACTTCAGACTTCTGCTGTTGTTACCCTCCATGGACAGCTCTTTGTTCGTGTACCATTTGCGTAGTGAAAATATTTGACTCAAGAGGGAGTTTTGAACGTTTGGATGAACTTTATTGACAAAGCATGGATGCTGATAGTTGACCAACATTGATAGTCAGATTGTGAATGCTAGGGCCGTAGATTGTGGATCTGTGTATGATGATTAGTTTGATCAAATTAGTTGTTGACGTGTTCTGTGGGTTAAAATTTTAAAGCAAAAGGAGGCATGTCCTGCTGCGACACATTTTTTTACTCTGGGAATTTAGCTAGAACTTTTTTGTTTCTGAGATTAATATTTATACTCAATTATTTCTAGTTAGCATTTGACT</gDNA_template>
            <first_frame> S  C  G  D  K  S  A  N  R  L  I  P  P   : R  L  A  Q  L  C  P  G  H  S  A  F  F  M  R  R :   L  F  *  N  M  K  G  I  R  C  K  A  A  S  F  N  F  L  L  L  L  F  L  K  Q  V  L  I  M  R :   E  M  V  I  K  L  L  D  Q  A  G  R  E  E  M  L  L  L  V  P  C  K  D  G  M  S  N  V  F  L  V  V  A  R  L  G  S  Q  L  *  R :   T  R  M  P  N  I  R  Q  S  V  R  R  I  S  K  A  L  :  V  L  *  N  T  R  D  Q  M  K  W  N  I  L  R  K  W  H  E  Q  K  H  L  S   : S  W  L  Q  Q  L  L  I  W  D  L  Q  L  I  G  *  K  S  T  C  E  K  Q :   K  I  V  L  R  S  M  L  W  C  L  G  F  *  E  R  R :   C  A  F  N  L  I  L  L  A  V  W  S  *  L  V  S  R  N  N  L  T  T  L  G  V  L  P  P  S  K  R :   *  L  A  C  Q  L  E  S  I  H  F  R  L  L  L  L  L  P  S  M  D  S  S  L  F  V  Y  H  L  R  S  E  N  I  *  L  K  R  E  F  *  T  F  G  *  T  L  L  T  K  H  G  C  *  *  L  T  N  I  D  S  Q  I  V  N  A  R  A  V  D  C  G  S  V  Y  D  D  *  F  D  Q  I  S  C  *  R  V  L  W  V  K  I  L  K  Q  K  E  A  C  P  A  A  T  H  F  F  T  L  G  I  *  L  E  L  F  C  F  *  D  *  Y  L  Y  S  I  I  S  S  *  H  L  T </first_frame>
            <second_frame>  A  V  E  T  S  R  R  I  V  *  S  P  Q  :  D  L  H  N  C  V  L  D  I  P  H  F  L  *  E   : G  S  F  R  I  *  K  A  *  D  A  K  R  Q  A  S  T  S  Y  C  C  S  S  *  S  R  C  *  *  *   : G  K  W  *  S  N  S  W  I  R  Q  G  E  K  R  C  C  C  S  C  H  A  R  M  A  *  A  T  S  S  W  L  W  R  G  W  G  A  N  C  K   : G  Q  E  C  Q  T  Y  A  K  A  *  E  E  F  Q  K  H  W :   F  Y  K  T  Q  E  T  K  *  N  G  T  S  F  E  S  G  T  N  R  N  I  *  A  :  V  G  Y  N  S  C  *  F  G  T  S  S  *  L  G  K  N  Q  R  A  R  N   : K  R  L  F  *  D  L  C  S  G  A  W  A  F  E  R  G   : G  A  R  S  I  *  S  C  W  P  S  G  H  N  W  S  A  G  T  T  *  Q  P  L  G  Y  Y  R  L  Q  K   : G  S  *  P  A  S  *  N  R  S  T  S  D  F  C  C  C  Y  P  P  W  T  A  L  C  S  C  T  I  C  V  V  K  I  F  D  S  R  G  S  F  E  R  L  D  E  L  Y  *  Q  S  M  D  A  D  S  *  P  T  L  I  V  R  L  *  M  L  G  P  *  I  V  D  L  C  M  M  I  S  L  I  K  L  V  V  D  V  F  C  G  L  K  F  *  S  K  R  R  H  V  L  L  R  H  I  F  L  L  W  E  F  S  *  N  F  F  V  S  E  I  N  I  Y  T  Q  L  F  L  V  S  I  *   </second_frame>
            <third_frame>   L  W  R  Q  V  G  E  S  F  N  P  P  K :   T  C  T  T  V  S  W  T  F  R  I  F  Y  E  K  :  A  L  L  E  Y  E  R  H  K  M  Q  S  G  K  L  Q  L  P  I  A  A  L  P  E  A  G  V  D  N  E  :  G  N  G  N  Q  T  P  G  S  G  R  A  R  R  D  A  A  A  R  A  M  Q  G  W  H  E  Q  R  L  L  G  C  G  E  V  G  E  P  I  V  K  :  D  K  N  A  K  H  T  P  K  R  E  K  N  F  K  S  I   : G  S  I  K  H  K  R  P  N  E  M  E  H  P  S  K  V  A  R  T  E  T  S  K  Q :   L  V  T  T  V  V  D  L  G  P  P  A  D  W  V  K  I  N  V  R  E  T  :  K  D  C  F  E  I  Y  A  L  V  P  G  L  L  R  E  E  :  V  R  V  Q  S  D  P  A  G  R  L  V  I  T  G  Q  P  E  Q  L  D  N  P  W  G  I  T  A  F  K  K  :  V  V  S  L  P  A  R  I  D  P  L  Q  T  S  A  V  V  T  L  H  G  Q  L  F  V  R  V  P  F  A  *  *  K  Y  L  T  Q  E  G  V  L  N  V  W  M  N  F  I  D  K  A  W  M  L  I  V  D  Q  H  *  *  S  D  C  E  C  *  G  R  R  L  W  I  C  V  *  *  L  V  *  S  N  *  L  L  T  C  S  V  G  *  N  F  K  A  K  G  G  M  S  C  C  D  T  F  F  Y  S  G  N  L  A  R  T  F  L  F  L  R  L  I  F  I  L  N  Y  F  *  L  A  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39404" stop="39367"/>
                    <exon start="35363" stop="35318"/>
                    <exon start="34551" stop="34462"/>
                    <exon start="33102" stop="32980"/>
                    <exon start="32875" stop="32824"/>
                    <exon start="32592" stop="32520"/>
                    <exon start="32049" stop="31983"/>
                    <exon start="31901" stop="31851"/>
                    <exon start="30935" stop="30843"/>
                    <exon start="30284" stop="30192"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYERHKMQSGKLQLPIAALPEAGVDNEGNGNQTPGSGRARRDAAARAMQGWHEQRLLGCGEVGEPIVKDKNAKHTPKREKNFKSIGSIKHKRPNEMEHPSKVARTETSKQLVTTVVDLGPPADWVKINVRETKDCFEIYALVPGLLREEVRVQSDPAGRLVITGQPEQLDNPWGITAFKKVVSLPARIDPLQTSAVVTLHGQLFVRVPFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39406" e_stop="39367"/>
            <exon e_start="35363" e_stop="35318"/>
            <exon e_start="34551" e_stop="34462"/>
            <exon e_start="33102" e_stop="32980"/>
            <exon e_start="32875" e_stop="32824"/>
            <exon e_start="32592" e_stop="32518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39406" e_stop="39367" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="39366" i_stop="35364" i_length="4003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="35363" e_stop="35318" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35317" i_stop="34552" i_length="766"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34551" e_stop="34462" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34461" i_stop="33103" i_length="1359"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="33102" e_stop="32980" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.998">
            <gDNA_intron_boundary i_start="32979" i_stop="32876" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32875" e_stop="32824" e_length="52"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="32823" i_stop="32593" i_length="231"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="32592" e_stop="32518" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39406" stop="39367"/>
              <exon start="35363" stop="35318"/>
              <exon start="34551" stop="34462"/>
              <exon start="33102" stop="32980"/>
              <exon start="32875" stop="32824"/>
              <exon start="32592" stop="32518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGTGGAGACAAGTCGGCGAATCGTTTAATCCCCCCAA : GACTTGCACAACTGTGTCCTGGACATTCCGCATTTTTTATGAGAAG : GCTCTTTTAGAATATGAAAGGCATAAGATGCAAAGCGGCAAGCTTCAACTTCCTATTGCTGCTCTTCCTGAAGCAGGTGTTGATAATGAG : GGAAATGGTAATCAAACTCCTGGATCAGGCAGGGCGAGAAGAGATGCTGCTGCTCGTGCCATGCAAGGATGGCATGAGCAACGTCTTCTTGGTTGTGGCGAGGTTGGGGAGCCAATTGTAAAG : GACAAGAATGCCAAACATACGCCAAAGCGTGAGAAGAATTTCAAAAGCATTG : GTTCTATAAAACACAAGAGACCAAATGAAATGGAACATCCTTCGAAAGTGGCACGAACAGAAACATCTAAGCAGT</gDNA_template>
            <first_frame> S  C  G  D  K  S  A  N  R  L  I  P  P   : R  L  A  Q  L  C  P  G  H  S  A  F  F  M  R  R :   L  F  *  N  M  K  G  I  R  C  K  A  A  S  F  N  F  L  L  L  L  F  L  K  Q  V  L  I  M  R :   E  M  V  I  K  L  L  D  Q  A  G  R  E  E  M  L  L  L  V  P  C  K  D  G  M  S  N  V  F  L  V  V  A  R  L  G  S  Q  L  *  R :   T  R  M  P  N  I  R  Q  S  V  R  R  I  S  K  A  L  :  V  L  *  N  T  R  D  Q  M  K  W  N  I  L  R  K  W  H  E  Q  K  H  L  S  S </first_frame>
            <second_frame>  A  V  E  T  S  R  R  I  V  *  S  P  Q  :  D  L  H  N  C  V  L  D  I  P  H  F  L  *  E   : G  S  F  R  I  *  K  A  *  D  A  K  R  Q  A  S  T  S  Y  C  C  S  S  *  S  R  C  *  *  *   : G  K  W  *  S  N  S  W  I  R  Q  G  E  K  R  C  C  C  S  C  H  A  R  M  A  *  A  T  S  S  W  L  W  R  G  W  G  A  N  C  K   : G  Q  E  C  Q  T  Y  A  K  A  *  E  E  F  Q  K  H  W :   F  Y  K  T  Q  E  T  K  *  N  G  T  S  F  E  S  G  T  N  R  N  I  *  A   </second_frame>
            <third_frame>   L  W  R  Q  V  G  E  S  F  N  P  P  K :   T  C  T  T  V  S  W  T  F  R  I  F  Y  E  K  :  A  L  L  E  Y  E  R  H  K  M  Q  S  G  K  L  Q  L  P  I  A  A  L  P  E  A  G  V  D  N  E  :  G  N  G  N  Q  T  P  G  S  G  R  A  R  R  D  A  A  A  R  A  M  Q  G  W  H  E  Q  R  L  L  G  C  G  E  V  G  E  P  I  V  K  :  D  K  N  A  K  H  T  P  K  R  E  K  N  F  K  S  I   : G  S  I  K  H  K  R  P  N  E  M  E  H  P  S  K  V  A  R  T  E  T  S  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39404" stop="39367"/>
                    <exon start="35363" stop="35318"/>
                    <exon start="34551" stop="34462"/>
                    <exon start="33102" stop="32980"/>
                    <exon start="32875" stop="32824"/>
                    <exon start="32592" stop="32519"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYERHKMQSGKLQLPIAALPEAGVDNEGNGNQTPGSGRARRDAAARAMQGWHEQRLLGCGEVGEPIVKDKNAKHTPKREKNFKSIGSIKHKRPNEMEHPSKVARTETSKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="48512" PGL_stop="49966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48512" e_stop="48841"/>
            <exon e_start="49098" e_stop="49262"/>
            <exon e_start="49954" e_stop="49966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48512" e_stop="48841" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="48842" i_stop="49097" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49098" e_stop="49262" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49263" i_stop="49953" i_length="691"/>
          </intron>
          <exon e_serial="3" e_score="0.846">
            <gDNA_exon_boundary e_start="49954" e_stop="49966" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48512" stop="48841"/>
              <exon start="49098" stop="49262"/>
              <exon start="49954" stop="49966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257298" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48557" stop="48841"/>
              <exon start="49098" stop="49260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264885" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATAATGTCACAAAATAACAACTTGTGCTACTTGGTCACATCACTGAATGTAATCCATTAAGCATCTTTGACTTGTTGAAATGATTGCAGGGATGGAGCCATACCACTTCTAACACTGATCATGGGCGGTAACCTTTTGAAGGGTTTGACCGGTTCAGGGATTCAGAAATCCCTACTTCTTGGCATTATTGTTGTCAGATACATTGCCCTGCCTCTTATTGGTATCGTTGTAGTCAAAGGAGCTATTCGCTTGGGCTTGGTGCAACATGATCCATTATATCAATTTGTGCTTTTACTTCAATTTGCACTTCCACCAGCAATGAACATTG : GCACCATAACACAGTTATTTGGAGCTGGTGAGAGTGAGTGTTCAGTGATTATGTTTTGGGCTTATGCATTGGCTTCAATATCGCTTACTCTGTGGACAACATTCTTCATGTGGCTTGTATCTTAACTTCATTTTTTTTTAATATCAGACATAAACAAGTTGACAT : AAAAAAGAAAAAC</gDNA_template>
            <first_frame> R  *  C  H  K  I  T  T  C  A  T  W  S  H  H  *  M  *  S  I  K  H  L  *  L  V  E  M  I  A  G  M  E  P  Y  H  F  *  H  *  S  W  A  V  T  F  *  R  V  *  P  V  Q  G  F  R  N  P  Y  F  L  A  L  L  L  S  D  T  L  P  C  L  L  L  V  S  L  *  S  K  E  L  F  A  W  A  W  C  N  M  I  H  Y  I  N  L  C  F  Y  F  N  L  H  F  H  Q  Q  *  T  L  :  A  P  *  H  S  Y  L  E  L  V  R  V  S  V  Q  *  L  C  F  G  L  M  H  W  L  Q  Y  R  L  L  C  G  Q  H  S  S  C  G  L  Y  L  N  F  I  F  F  *  Y  Q  T  *  T  S  *  H  :  K  K  E  K  </first_frame>
            <second_frame>  D  N  V  T  K  *  Q  L  V  L  L  G  H  I  T  E  C  N  P  L  S  I  F  D  L  L  K  *  L  Q  G  W  S  H  T  T  S  N  T  D  H  G  R  *  P  F  E  G  F  D  R  F  R  D  S  E  I  P  T  S  W  H  Y  C  C  Q  I  H  C  P  A  S  Y  W  Y  R  C  S  Q  R  S  Y  S  L  G  L  G  A  T  *  S  I  I  S  I  C  A  F  T  S  I  C  T  S  T  S  N  E  H  W :   H  H  N  T  V  I  W  S  W  *  E  *  V  F  S  D  Y  V  L  G  L  C  I  G  F  N  I  A  Y  S  V  D  N  I  L  H  V  A  C  I  L  T  S  F  F  F  N  I  R  H  K  Q  V  D  I :   K  K  K  N </second_frame>
            <third_frame>   I  M  S  Q  N  N  N  L  C  Y  L  V  T  S  L  N  V  I  H  *  A  S  L  T  C  *  N  D  C  R  D  G  A  I  P  L  L  T  L  I  M  G  G  N  L  L  K  G  L  T  G  S  G  I  Q  K  S  L  L  L  G  I  I  V  V  R  Y  I  A  L  P  L  I  G  I  V  V  V  K  G  A  I  R  L  G  L  V  Q  H  D  P  L  Y  Q  F  V  L  L  L  Q  F  A  L  P  P  A  M  N  I   : G  T  I  T  Q  L  F  G  A  G  E  S  E  C  S  V  I  M  F  W  A  Y  A  L  A  S  I  S  L  T  L  W  T  T  F  F  M  W  L  V  S  *  L  H  F  F  L  I  S  D  I  N  K  L  T   : *  K  R  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48592" stop="48841"/>
                    <exon start="49098" stop="49222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDCRDGAIPLLTLIMGGNLLKGLTGSGIQKSLLLGIIVVRYIALPLIGIVVVKGAIRLGLVQHDPLYQFVLLLQFALPPAMNIGTITQLFGAGESECSVIMFWAYALASISLTLWTTFFMWLVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="51540" PGL_stop="49583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51540" e_stop="51261"/>
            <exon e_start="51071" e_stop="50930"/>
            <exon e_start="50835" e_stop="50774"/>
            <exon e_start="50679" e_stop="50568"/>
            <exon e_start="50475" e_stop="50382"/>
            <exon e_start="50263" e_stop="50194"/>
            <exon e_start="50109" e_stop="49971"/>
            <exon e_start="49887" e_stop="49583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.984"/>
          <exon-intron don_prob="0.990" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="51540" e_stop="51261" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="51260" i_stop="51072" i_length="189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51071" e_stop="50930" e_length="142"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50929" i_stop="50836" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50835" e_stop="50774" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="50773" i_stop="50680" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50679" e_stop="50568" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.955">
            <gDNA_intron_boundary i_start="50567" i_stop="50476" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50475" e_stop="50382" e_length="94"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50381" i_stop="50264" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50263" e_stop="50194" e_length="70"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.907">
            <gDNA_intron_boundary i_start="50193" i_stop="50110" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="50109" e_stop="49971" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49970" i_stop="49888" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49887" e_stop="49583" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51540" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50568"/>
              <exon start="50475" stop="50382"/>
              <exon start="50263" stop="50194"/>
              <exon start="50109" stop="49971"/>
              <exon start="49887" stop="49583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51533" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51526" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51524" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50568"/>
              <exon start="50475" stop="50422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51524" stop="51261"/>
              <exon start="51071" stop="50938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51518" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50568"/>
              <exon start="50475" stop="50400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51515" stop="51261"/>
              <exon start="51071" stop="50930"/>
              <exon start="50835" stop="50774"/>
              <exon start="50679" stop="50626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51506" stop="51261"/>
              <exon start="51071" stop="50982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50570" stop="50568"/>
              <exon start="50475" stop="50382"/>
              <exon start="50263" stop="50194"/>
              <exon start="50109" stop="49971"/>
              <exon start="49887" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50262" stop="50194"/>
              <exon start="50109" stop="49971"/>
              <exon start="49887" stop="49607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50254" stop="50194"/>
              <exon start="50109" stop="49971"/>
              <exon start="49887" stop="49583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCCCAGAAGCGCACAAACACAAACACAGCGAGAGTGAAGAAATGGAGGCTGCTAAAAATGCTGGTAAGAGTGTATCGGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTTGGGGAGGGTACCTATGGAAAGGTGTACAGAGCGAGAGATAGGATTACTGGCAAGATTGTTGCACTGAAGAAGACAAGGCTTCATGAGGACGAAGAAGGTGTTCCTCCAACTACTCTCCGTGAGATCTCACTCCTCAGAATGCTCTCAAGGGATCCCCACATTGTCAG : GCTGATGGATGTTAAACAAGGGCAGAACAAAGAAGGAAAGACTGTTCTTTACTTGGTCTTTGAGTACATGGATACTGATGTCAAGAAATTTATTCGTACTTTCCGTGCAAAAGGAGAAACTATGCCCCTTAAAATTGTAAAG : AGCTTGATGTACCAGCTCTGCAAAGGGGTTGCTTTCTGCCATGGCCATGGTGTATTGCACAG : GGATCTGAAACCACACAATCTTCTGATGGACCGTAAGACGAATGTGCTCAAATTAGCAGATTTTGGACTTGGCAGAGCTTATACTCTGCCCATTAAGAAGTACACACATGAG : ATATTAACCCTGTGGTATAGAGCCCCTGAGGTTCTACTTGGAGCTACTCATTATTCCACAGCAGTTGACATGTGGTCTGTTGGTTGTATATTTG : CTGAACTAGTGACAAACCAAGCCCTCTTCCCAGGAGACTCTGAGCTGCAACAACTGCTTCACATTTTCAG : ATTGCTAGGTACTCCTAATGAAGAACTCTGGCCTGGGGTGAGCAAGTTAGTTAACTGGCATGAATACCCCCAGTGGAAACCACAGCCACTCTCAACCGTTGTCCCTGGTCTTGATGAAGATGGGATTCACCTTCTCAGT : GAGATGTTGCATTATGAGCCGTCTAGGAGGATTTCAGCTAAGAAAGCTATGGAACATCCCTATTTTGATGATCTCGACAAAACTCCTCTCTGAAAAAAGTCAGCAATTTGATCAACAAAACTCGTCTAACCTCTATCGCAAGCTTTTATTGCTTTTCTCAAGCATCTTTTAATAGTAGTATCAATTAGTATGATGATGTGTTTCATTTCTAAACCTTTTCTTTTAATATCAACTGGATCAATGTAAGCACAACTATGTGCAATGATATATTTTGCTATCACATTACTTGGGGTGTTTTGCTGTAA</gDNA_template>
            <first_frame> K  P  Q  K  R  T  N  T  N  T  A  R  V  K  K  W  R  L  L  K  M  L  V  R  V  Y  R  R  W  R  H  L  R  S  W  R  R  L  G  R  V  P  M  E  R  C  T  E  R  E  I  G  L  L  A  R  L  L  H  *  R  R  Q  G  F  M  R  T  K  K  V  F  L  Q  L  L  S  V  R  S  H  S  S  E  C  S  Q  G  I  P  T  L  S   : G  *  W  M  L  N  K  G  R  T  K  K  E  R  L  F  F  T  W  S  L  S  T  W  I  L  M  S  R  N  L  F  V  L  S  V  Q  K  E  K  L  C  P  L  K  L  *  R :   A  *  C  T  S  S  A  K  G  L  L  S  A  M  A  M  V  Y  C  T   : G  I  *  N  H  T  I  F  *  W  T  V  R  R  M  C  S  N  *  Q  I  L  D  L  A  E  L  I  L  C  P  L  R  S  T  H  M  R :   Y  *  P  C  G  I  E  P  L  R  F  Y  L  E  L  L  I  I  P  Q  Q  L  T  C  G  L  L  V  V  Y  L  :  L  N  *  *  Q  T  K  P  S  S  Q  E  T  L  S  C  N  N  C  F  T  F  S   : D  C  *  V  L  L  M  K  N  S  G  L  G  *  A  S  *  L  T  G  M  N  T  P  S  G  N  H  S  H  S  Q  P  L  S  L  V  L  M  K  M  G  F  T  F  S  V :   R  C  C  I  M  S  R  L  G  G  F  Q  L  R  K  L  W  N  I  P  I  L  M  I  S  T  K  L  L  S  E  K  S  Q  Q  F  D  Q  Q  N  S  S  N  L  Y  R  K  L  L  L  L  F  S  S  I  F  *  *  *  Y  Q  L  V  *  *  C  V  S  F  L  N  L  F  F  *  Y  Q  L  D  Q  C  K  H  N  Y  V  Q  *  Y  I  L  L  S  H  Y  L  G  C  F  A  V  </first_frame>
            <second_frame>  N  P  R  S  A  Q  T  Q  T  Q  R  E  *  R  N  G  G  C  *  K  C  W  *  E  C  I  G  D  G  G  I  *  E  A  G  E  G  W  G  G  Y  L  W  K  G  V  Q  S  E  R  *  D  Y  W  Q  D  C  C  T  E  E  D  K  A  S  *  G  R  R  R  C  S  S  N  Y  S  P  *  D  L  T  P  Q  N  A  L  K  G  S  P  H  C  Q  :  A  D  G  C  *  T  R  A  E  Q  R  R  K  D  C  S  L  L  G  L  *  V  H  G  Y  *  C  Q  E  I  Y  S  Y  F  P  C  K  R  R  N  Y  A  P  *  N  C  K   : E  L  D  V  P  A  L  Q  R  G  C  F  L  P  W  P  W  C  I  A  Q  :  G  S  E  T  T  Q  S  S  D  G  P  *  D  E  C  A  Q  I  S  R  F  W  T  W  Q  S  L  Y  S  A  H  *  E  V  H  T  *   : D  I  N  P  V  V  *  S  P  *  G  S  T  W  S  Y  S  L  F  H  S  S  *  H  V  V  C  W  L  Y  I  C :   *  T  S  D  K  P  S  P  L  P  R  R  L  *  A  A  T  T  A  S  H  F  Q  :  I  A  R  Y  S  *  *  R  T  L  A  W  G  E  Q  V  S  *  L  A  *  I  P  P  V  E  T  T  A  T  L  N  R  C  P  W  S  *  *  R  W  D  S  P  S  Q   : *  D  V  A  L  *  A  V  *  E  D  F  S  *  E  S  Y  G  T  S  L  F  *  *  S  R  Q  N  S  S  L  K  K  V  S  N  L  I  N  K  T  R  L  T  S  I  A  S  F  Y  C  F  S  Q  A  S  F  N  S  S  I  N  *  Y  D  D  V  F  H  F  *  T  F  S  F  N  I  N  W  I  N  V  S  T  T  M  C  N  D  I  F  C  Y  H  I  T  W  G  V  L  L  * </second_frame>
            <third_frame>   T  P  E  A  H  K  H  K  H  S  E  S  E  E  M  E  A  A  K  N  A  G  K  S  V  S  A  M  E  A  F  E  K  L  E  K  V  G  E  G  T  Y  G  K  V  Y  R  A  R  D  R  I  T  G  K  I  V  A  L  K  K  T  R  L  H  E  D  E  E  G  V  P  P  T  T  L  R  E  I  S  L  L  R  M  L  S  R  D  P  H  I  V  R :   L  M  D  V  K  Q  G  Q  N  K  E  G  K  T  V  L  Y  L  V  F  E  Y  M  D  T  D  V  K  K  F  I  R  T  F  R  A  K  G  E  T  M  P  L  K  I  V  K  :  S  L  M  Y  Q  L  C  K  G  V  A  F  C  H  G  H  G  V  L  H  R :   D  L  K  P  H  N  L  L  M  D  R  K  T  N  V  L  K  L  A  D  F  G  L  G  R  A  Y  T  L  P  I  K  K  Y  T  H  E  :  I  L  T  L  W  Y  R  A  P  E  V  L  L  G  A  T  H  Y  S  T  A  V  D  M  W  S  V  G  C  I  F   : A  E  L  V  T  N  Q  A  L  F  P  G  D  S  E  L  Q  Q  L  L  H  I  F  R :   L  L  G  T  P  N  E  E  L  W  P  G  V  S  K  L  V  N  W  H  E  Y  P  Q  W  K  P  Q  P  L  S  T  V  V  P  G  L  D  E  D  G  I  H  L  L  S  :  E  M  L  H  Y  E  P  S  R  R  I  S  A  K  K  A  M  E  H  P  Y  F  D  D  L  D  K  T  P  L  *  K  K  S  A  I  *  S  T  K  L  V  *  P  L  S  Q  A  F  I  A  F  L  K  H  L  L  I  V  V  S  I  S  M  M  M  C  F  I  S  K  P  F  L  L  I  S  T  G  S  M  *  A  Q  L  C  A  M  I  Y  F  A  I  T  L  L  G  V  F  C  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51538" stop="51261"/>
                    <exon start="51071" stop="50930"/>
                    <exon start="50835" stop="50774"/>
                    <exon start="50679" stop="50568"/>
                    <exon start="50475" stop="50382"/>
                    <exon start="50263" stop="50194"/>
                    <exon start="50109" stop="49971"/>
                    <exon start="49887" stop="49795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPEAHKHKHSESEEMEAAKNAGKSVSAMEAFEKLEKVGEGTYGKVYRARDRITGKIVALKKTRLHEDEEGVPPTTLREISLLRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDVKKFIRTFRAKGETMPLKIVKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTNVLKLADFGLGRAYTLPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQALFPGDSELQQLLHIFRLLGTPNEELWPGVSKLVNWHEYPQWKPQPLSTVVPGLDEDGIHLLSEMLHYEPSRRISAKKAMEHPYFDDLDKTPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="70649" PGL_stop="64915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70649" e_stop="70505"/>
            <exon e_start="69956" e_stop="69784"/>
            <exon e_start="69447" e_stop="69335"/>
            <exon e_start="69050" e_stop="68976"/>
            <exon e_start="68890" e_stop="68777"/>
            <exon e_start="68680" e_stop="68613"/>
            <exon e_start="68457" e_stop="68374"/>
            <exon e_start="67919" e_stop="67866"/>
            <exon e_start="67654" e_stop="67574"/>
            <exon e_start="67468" e_stop="67375"/>
            <exon e_start="67293" e_stop="67220"/>
            <exon e_start="66987" e_stop="66877"/>
            <exon e_start="66794" e_stop="66750"/>
            <exon e_start="66664" e_stop="66608"/>
            <exon e_start="66099" e_stop="65995"/>
            <exon e_start="65918" e_stop="65802"/>
            <exon e_start="65695" e_stop="65592"/>
            <exon e_start="65383" e_stop="65218"/>
            <exon e_start="65118" e_stop="64915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.350" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="0.964"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
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          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAGTACTATTATATTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG : GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG : GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG : GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG : GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG : GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA : GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG : GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG : TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG : GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG : ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG : GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG : CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG : ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG : AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTAT : GTGCTTGGTCATGTTTGCTACCATATTTTAGCTGCTGGTCTTAATGGTTACATGGCTACTATTACCAACCTGAAAAATCCTGCCAACAAGTGGCATTGTGGTGCTGCCCCTATATCT : GCAATGATGACTGTTAAGCGCTACGGTCGTGGTCCTGGTAAAGCATCAATTGGGGTACCTGCTTTGCATCCTGCTACTGTGGATTTGAGGGGCAAATCATATGA : ACTGTTGAGTCAAAATGCAACAAAGTTTTTATTGGATGATGTTTATAGAAACCCAGGTCCCCTCCAGTTTGATGGTCCTGGTGCAGATGCCAAGGCTGTTACCCTTTGTGTTGAAGACCAGGATTACATTGGACGTATTAAGAAATTGCAGGAATACCTAGACAAG : GTGCGTACAATTGTGAAGCCTGGTTGCTCACAAGACGTCCTGAAGGCTGCATTAAGTGCCATGGCTTCTGTGACTGACATTCTTTCAGTGATATCGTCACCCTCAAGTGTGAGCACACCATTTTAGATGAGAACCTATCATCTTTTAACATTGAAAAGATTTGGAGGAACTCTTGCTTTTGCGGCTGTTTGCCTAGTTTTTTTT</gDNA_template>
            <first_frame> E  S  T  I  I  L  Y  *  N  T  Q  K  S  E  V  G  I  N  N  G  C  R  L  R  H  S  S  R  T  L  *  F  A  E  T  S  I  S  L  P  P  *  T  S  T  L  S  S   : G  Y  Y  C  P  G  R  T  P  *  C  N  H  C  S  R  S  L  W  *  T  H  N  *  T  L  L  P  T  H  L  W  S  T  I  S  P  F  S  *  G  N  C  Q  G  P  *  C  S  D  N  Y  *  A  S  C  N  *  :  G  W  G  A  I  L  W  *  T  I  S  W  R  T  Q  R  D  M  G  S  S  *  C  S  *  G  S  Q  P  Q  *  Y  L  A  W  V  F  R :   W  F  *  R  F  I  C  T  K  N  S  R  D  H  R  *  C  S  C  Y  L  *  E  S  R :   W  I  *  H  A  G  A  D  K  R  S  D  *  N  D  *  A  S  K  C  C  N  G  C  M  Q  S  F  E  I  G  W  S  C  H  H  W  R :   S  D  I  K  H  R  C  C  S  S  G  R  K  I  C  R  N  K  M  P  Y  K   : S  G  W  C  S  C  Y  L  K  W  G  S  Q  E  S  V  C  *  S  E  R  W  F  *  H  N  L  Q   : G  *  L  P  T  N  *  Q  C  M  H  *  C  T  L  S  *  E   : V  L  L  F  H  *  T  H  G  A  K  G  I  T  C  C  I  R  V  H  S  A  V  T  S  *  Y   : G  D  S  W  R  G  G  S  C  I  K  A  Y  Y  F  *  H  H  T  T  N  L  *  C  S  S  G  *  G  *  T  * :   *  K  S  W  C  H  P  V  A  *  R  A  Y  *  K  Y  S  *  N  I  C  S  I  A   : G  N  S  W  F  T  Q  A  R  C  F  C  *  *  H  F  L  S  T  I  T  M  G  F  C  T  F  R  I  F  A  A  F  Y  Q  K  A   : A  S  P  T  P  R  I  R  *  L  C  S  A  I  T   : D  *  D  R  E  T  Y  S  S  S  R  G  N  R  N  E  Q  A  I   : E  R  R  N  L  Q  R  K  E  I  *  C  Y  L  P  F  L  W  L  S  S  T  G  I  I  A  I  K  V  *  L  *  L  C  L   : C  A  W  S  C  L  L  P  Y  F  S  C  W  S  *  W  L  H  G  Y  Y  Y  Q  P  E  K  S  C  Q  Q  V  A  L  W  C  C  P  Y  I   : C  N  D  D  C  *  A  L  R  S  W  S  W  *  S  I  N  W  G  T  C  F  A  S  C  Y  C  G  F  E  G  Q  I  I  *  :  T  V  E  S  K  C  N  K  V  F  I  G  *  C  L  *  K  P  R  S  P  P  V  *  W  S  W  C  R  C  Q  G  C  Y  P  L  C  *  R  P  G  L  H  W  T  Y  *  E  I  A  G  I  P  R  Q   : G  A  Y  N  C  E  A  W  L  L  T  R  R  P  E  G  C  I  K  C  H  G  F  C  D  *  H  S  F  S  D  I  V  T  L  K  C  E  H  T  I  L  D  E  N  L  S  S  F  N  I  E  K  I  W  R  N  S  C  F  C  G  C  L  P  S  F  F  </first_frame>
            <second_frame>  R  V  L  L  Y  Y  I  E  T  H  K  K  V  R  *  A  *  T  M  D  A  D  Y  G  I  A  R  E  L  S  D  L  Q  K  L  R  S  H  Y  H  P  E  L  P  P  C  L  Q  :  G  T  T  V  R  V  E  L  R  D  A  T  T  A  A  D  P  S  G  E  H  T  I  K  R  F  F  P  H  T  Y  G  Q  P  L  A  H  F  L  R  A  T  A  K  V  P  D  A  Q  I  I  T  E  H  P  A  I  R :   V  G  V  L  F  C  G  R  Q  S  P  G  G  H  N  V  I  W  G  L  H  D  A  L  K  V  H  N  P  N  N  I  L  L  G  F  L   : G  G  S  E  G  L  F  A  Q  K  T  L  E  I  T  D  D  V  L  A  T  Y  K  N  Q   : G  G  Y  D  M  L  G  R  T  K  D  Q  I  R  T  T  E  Q  V  N  A  A  M  A  A  C  K  A  L  K  L  D  G  L  V  I  I  G   : G  V  T  S  N  T  D  A  A  H  L  A  E  K  F  A  E  T  K  C  P  T  K  :  V  V  G  V  P  V  T  L  N  G  D  L  K  N  Q  F  V  E  A  N  V  G  F  D  T  I  C  K  :  V  N  S  Q  L  I  S  N  V  C  T  D  A  L  S  A  E  K  :  Y  Y  Y  F  I  R  L  M  G  R  K  A  S  H  V  A  L  E  C  T  L  Q  S  H  P  N  M  :  V  I  L  G  E  E  V  A  A  S  K  L  T  I  F  D  I  T  Q  Q  I  C  D  A  V  Q  A  R  A  E  H   : D  K  N  H  G  V  I  L  L  P  E  G  L  I  E  S  I  P  E  I  Y  A  L  L  Q  :  E  I  H  G  L  L  R  Q  G  V  S  A  D  N  I  S  S  Q  L  S  P  W  A  S  A  L  F  E  F  L  P  H  F  I  R  K  Q  :  L  L  L  H  P  E  S  D  D  S  A  Q  L  S  Q  :  I  E  T  E  K  L  I  A  H  L  V  E  T  E  M  N  K  R  L  :  K  E  G  T  Y  K  G  K  K  F  N  A  I  C  H  F  F  G  Y  Q  A  R  G  S  L  P  S  K  F  D  C  D  Y  A  Y  :  V  L  G  H  V  C  Y  H  I  L  A  A  G  L  N  G  Y  M  A  T  I  T  N  L  K  N  P  A  N  K  W  H  C  G  A  A  P  I  S  :  A  M  M  T  V  K  R  Y  G  R  G  P  G  K  A  S  I  G  V  P  A  L  H  P  A  T  V  D  L  R  G  K  S  Y  E :   L  L  S  Q  N  A  T  K  F  L  L  D  D  V  Y  R  N  P  G  P  L  Q  F  D  G  P  G  A  D  A  K  A  V  T  L  C  V  E  D  Q  D  Y  I  G  R  I  K  K  L  Q  E  Y  L  D  K  :  V  R  T  I  V  K  P  G  C  S  Q  D  V  L  K  A  A  L  S  A  M  A  S  V  T  D  I  L  S  V  I  S  S  P  S  S  V  S  T  P  F  *  M  R  T  Y  H  L  L  T  L  K  R  F  G  G  T  L  A  F  A  A  V  C  L  V  F  F </second_frame>
            <third_frame>   E  Y  Y  Y  I  I  L  K  H  T  K  K  *  G  R  H  K  Q  W  M  Q  I  T  A  *  L  E  N  S  L  I  C  R  N  F  D  L  T  T  T  L  N  F  H  L  V  F  R :   V  L  L  S  G  *  N  S  V  M  Q  P  L  Q  Q  I  P  L  V  N  T  Q  L  N  A  S  S  H  T  L  M  V  N  H  *  P  I  F  L  G  Q  L  P  R  S  L  M  L  R  *  L  L  S  I  L  Q  L   : G  L  G  C  Y  F  V  V  D  N  L  L  E  D  T  T  *  Y  G  V  F  M  M  L  L  R  F  T  T  P  I  I  S  C  L  G  F  *  :  V  V  L  K  V  Y  L  H  K  K  L  *  R  S  P  M  M  F  L  L  P  I  R  I  K  :  V  D  M  T  C  W  G  G  Q  K  I  R  L  E  R  L  S  K  *  M  L  Q  W  L  H  A  K  L  *  N  W  M  V  L  S  S  L  E  :  E  *  H  Q  T  P  M  L  L  I  W  Q  K  N  L  Q  K  Q  N  A  L  Q  K :   W  L  V  F  L  L  P  *  M  G  I  S  R  I  S  L  L  K  R  T  L  V  L  T  Q  S  A  R :   L  T  P  N  *  L  A  M  Y  A  L  M  H  S  Q  L  R  S :   I  T  I  S  L  D  S  W  G  E  R  H  H  M  L  H  *  S  A  L  C  S  H  I  L  I  W :   *  F  L  E  R  R  *  L  H  Q  S  L  L  F  L  T  S  H  N  K  F  V  M  Q  F  R  L  G  L  N  M  :  I  K  I  M  V  S  S  C  C  L  K  G  L  L  K  V  F  L  K  Y  M  L  Y  C  R :   K  F  M  V  Y  S  G  K  V  F  L  L  I  T  F  P  L  N  Y  H  H  G  L  L  H  F  S  N  F  C  R  I  L  S  E  S  S :   F  S  Y  T  Q  N  Q  M  T  L  L  S  Y  H  R :   L  R  P  R  N  L  *  L  I  S  W  K  Q  K  *  T  S  D  * :   K  K  E  L  T  K  E  R  N  L  M  L  F  A  I  S  L  V  I  K  H  G  D  H  C  H  Q  S  L  I  V  T  M  P  M :   C  L  V  M  F  A  T  I  F  *  L  L  V  L  M  V  T  W  L  L  L  P  T  *  K  I  L  P  T  S  G  I  V  V  L  P  L  Y  L :   Q  *  *  L  L  S  A  T  V  V  V  L  V  K  H  Q  L  G  Y  L  L  C  I  L  L  L  W  I  *  G  A  N  H  M   : N  C  *  V  K  M  Q  Q  S  F  Y  W  M  M  F  I  E  T  Q  V  P  S  S  L  M  V  L  V  Q  M  P  R  L  L  P  F  V  L  K  T  R  I  T  L  D  V  L  R  N  C  R  N  T  *  T  R :   C  V  Q  L  *  S  L  V  A  H  K  T  S  *  R  L  H  *  V  P  W  L  L  *  L  T  F  F  Q  *  Y  R  H  P  Q  V  *  A  H  H  F  R  *  E  P  I  I  F  *  H  *  K  D  L  E  E  L  L  L  L  R  L  F  A  *  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70597" stop="70505"/>
                    <exon start="69956" stop="69784"/>
                    <exon start="69447" stop="69335"/>
                    <exon start="69050" stop="68976"/>
                    <exon start="68890" stop="68777"/>
                    <exon start="68680" stop="68613"/>
                    <exon start="68457" stop="68374"/>
                    <exon start="67919" stop="67866"/>
                    <exon start="67654" stop="67574"/>
                    <exon start="67468" stop="67375"/>
                    <exon start="67293" stop="67220"/>
                    <exon start="66987" stop="66877"/>
                    <exon start="66794" stop="66750"/>
                    <exon start="66664" stop="66608"/>
                    <exon start="66099" stop="65995"/>
                    <exon start="65918" stop="65802"/>
                    <exon start="65695" stop="65592"/>
                    <exon start="65383" stop="65218"/>
                    <exon start="65118" stop="64993"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1851</number_coding_nucleotides>
                  <number_encoded_amino_acids>617</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDADYGIARELSDLQKLRSHYHPELPPCLQGTTVRVELRDATTAADPSGEHTIKRFFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGVLFCGRQSPGGHNVIWGLHDALKVHNPNNILLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDGLVIIGGVTSNTDAAHLAEKFAETKCPTKVVGVPVTLNGDLKNQFVEANVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTIFDITQQICDAVQARAEHDKNHGVILLPEGLIESIPEIYALLQEIHGLLRQGVSADNISSQLSPWASALFEFLPHFIRKQLLLHPESDDSAQLSQIETEKLIAHLVETEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHVCYHILAAGLNGYMATITNLKNPANKWHCGAAPISAMMTVKRYGRGPGKASIGVPALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAVTLCVEDQDYIGRIKKLQEYLDKVRTIVKPGCSQDVLKAALSAMASVTDILSVISSPSSVSTPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70649" e_stop="70505"/>
            <exon e_start="69956" e_stop="69784"/>
            <exon e_start="69447" e_stop="69335"/>
            <exon e_start="69050" e_stop="68976"/>
            <exon e_start="68890" e_stop="68777"/>
            <exon e_start="68680" e_stop="68613"/>
            <exon e_start="68457" e_stop="68374"/>
            <exon e_start="67919" e_stop="67866"/>
            <exon e_start="67654" e_stop="67574"/>
            <exon e_start="67468" e_stop="67375"/>
            <exon e_start="67293" e_stop="67220"/>
            <exon e_start="66987" e_stop="66877"/>
            <exon e_start="66794" e_stop="66750"/>
            <exon e_start="66664" e_stop="66608"/>
            <exon e_start="66099" e_stop="65994"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.850" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.589" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.350" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.869" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.946" e_score="0.930"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70649" e_stop="70505" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69956" e_stop="69784" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69447" e_stop="69335" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69050" e_stop="68976" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68890" e_stop="68777" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.850" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68776" i_stop="68681" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68680" e_stop="68613" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68612" i_stop="68458" i_length="155"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68457" e_stop="68374" e_length="84"/>
          </exon>
          <intron i_serial="7" don_prob="0.994" acc_prob="0.942">
            <gDNA_intron_boundary i_start="68373" i_stop="67920" i_length="454"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67919" e_stop="67866" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="0.894">
            <gDNA_intron_boundary i_start="67865" i_stop="67655" i_length="211"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67654" e_stop="67574" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.589" acc_prob="1.000">
            <gDNA_intron_boundary i_start="67573" i_stop="67469" i_length="105"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67468" e_stop="67375" e_length="94"/>
          </exon>
          <intron i_serial="10" don_prob="0.938" acc_prob="0.350">
            <gDNA_intron_boundary i_start="67374" i_stop="67294" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67293" e_stop="67220" e_length="74"/>
          </exon>
          <intron i_serial="11" don_prob="0.997" acc_prob="0.971">
            <gDNA_intron_boundary i_start="67219" i_stop="66988" i_length="232"/>
          </intron>
          <exon e_serial="12" e_score="0.991">
            <gDNA_exon_boundary e_start="66987" e_stop="66877" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.930" acc_prob="0.869">
            <gDNA_intron_boundary i_start="66876" i_stop="66795" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="66794" e_stop="66750" e_length="45"/>
          </exon>
          <intron i_serial="13" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66749" i_stop="66665" i_length="85"/>
          </intron>
          <exon e_serial="14" e_score="0.930">
            <gDNA_exon_boundary e_start="66664" e_stop="66608" e_length="57"/>
          </exon>
          <intron i_serial="14" don_prob="0.975" acc_prob="0.946">
            <gDNA_intron_boundary i_start="66607" i_stop="66100" i_length="508"/>
          </intron>
          <exon e_serial="15" e_score="0.962">
            <gDNA_exon_boundary e_start="66099" e_stop="65994" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70649" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70634" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70629" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70629" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70628" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70604" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70603" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70602" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70599" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70596" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70588" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70587" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70586" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70580" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70567" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69847" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69436" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69433" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69351" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69039" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67375"/>
              <exon start="67293" stop="67224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69027" stop="68976"/>
              <exon start="68890" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68886" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67375"/>
              <exon start="67293" stop="67220"/>
              <exon start="66987" stop="66877"/>
              <exon start="66794" stop="66750"/>
              <exon start="66664" stop="66645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68863" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67375"/>
              <exon start="67293" stop="67220"/>
              <exon start="66987" stop="66890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68809" stop="68777"/>
              <exon start="68680" stop="68613"/>
              <exon start="68457" stop="68374"/>
              <exon start="67919" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67375"/>
              <exon start="67293" stop="67220"/>
              <exon start="66987" stop="66908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67917" stop="67866"/>
              <exon start="67654" stop="67574"/>
              <exon start="67468" stop="67375"/>
              <exon start="67293" stop="67220"/>
              <exon start="66987" stop="66877"/>
              <exon start="66794" stop="66750"/>
              <exon start="66664" stop="66608"/>
              <exon start="66099" stop="65994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAGTACTATTATATTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG : GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG : GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG : GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG : GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATTGGAG : GAGTGACATCAAACACCGATGCTGCTCATCTGGCAGAAAAATTTGCAGAAACAAAATGCCCTACAAAA : GTGGTTGGTGTTCCTGTTACCTTAAATGGGGATCTCAAGAATCAGTTTGTTGAAGCGAACGTTGGTTTTGACACAATCTGCAAG : GTTAACTCCCAACTAATTAGCAATGTATGCACTGATGCACTCTCAGCTGAGAAG : TATTACTATTTCATTAGACTCATGGGGCGAAAGGCATCACATGTTGCATTAGAGTGCACTCTGCAGTCACATCCTAATATG : GTGATTCTTGGAGAGGAGGTAGCTGCATCAAAGCTTACTATTTTTGACATCACACAACAAATTTGTGATGCAGTTCAGGCTAGGGCTGAACATG : ATAAAAATCATGGTGTCATCCTGTTGCCTGAAGGGCTTATTGAAAGTATTCCTGAAATATATGCTCTATTGCAG : GAAATTCATGGTTTACTCAGGCAAGGTGTTTCTGCTGATAACATTTCCTCTCAACTATCACCATGGGCTTCTGCACTTTTCGAATTTTTGCCGCATTTTATCAGAAAGCAG : CTTCTCCTACACCCAGAATCAGATGACTCTGCTCAGCTATCACAG : ATTGAGACCGAGAAACTTATAGCTCATCTCGTGGAAACAGAAATGAACAAGCGATTG : AAAGAAGGAACTTACAAAGGAAAGAAATTTAATGCTATTTGCCATTTCTTTGGTTATCAAGCACGGGGATCATTGCCATCAAAGTTTGATTGTGACTATGCCTATG</gDNA_template>
            <first_frame> E  S  T  I  I  L  Y  *  N  T  Q  K  S  E  V  G  I  N  N  G  C  R  L  R  H  S  S  R  T  L  *  F  A  E  T  S  I  S  L  P  P  *  T  S  T  L  S  S   : G  Y  Y  C  P  G  R  T  P  *  C  N  H  C  S  R  S  L  W  *  T  H  N  *  T  L  L  P  T  H  L  W  S  T  I  S  P  F  S  *  G  N  C  Q  G  P  *  C  S  D  N  Y  *  A  S  C  N  *  :  G  W  G  A  I  L  W  *  T  I  S  W  R  T  Q  R  D  M  G  S  S  *  C  S  *  G  S  Q  P  Q  *  Y  L  A  W  V  F  R :   W  F  *  R  F  I  C  T  K  N  S  R  D  H  R  *  C  S  C  Y  L  *  E  S  R :   W  I  *  H  A  G  A  D  K  R  S  D  *  N  D  *  A  S  K  C  C  N  G  C  M  Q  S  F  E  I  G  W  S  C  H  H  W  R :   S  D  I  K  H  R  C  C  S  S  G  R  K  I  C  R  N  K  M  P  Y  K   : S  G  W  C  S  C  Y  L  K  W  G  S  Q  E  S  V  C  *  S  E  R  W  F  *  H  N  L  Q   : G  *  L  P  T  N  *  Q  C  M  H  *  C  T  L  S  *  E   : V  L  L  F  H  *  T  H  G  A  K  G  I  T  C  C  I  R  V  H  S  A  V  T  S  *  Y   : G  D  S  W  R  G  G  S  C  I  K  A  Y  Y  F  *  H  H  T  T  N  L  *  C  S  S  G  *  G  *  T  * :   *  K  S  W  C  H  P  V  A  *  R  A  Y  *  K  Y  S  *  N  I  C  S  I  A   : G  N  S  W  F  T  Q  A  R  C  F  C  *  *  H  F  L  S  T  I  T  M  G  F  C  T  F  R  I  F  A  A  F  Y  Q  K  A   : A  S  P  T  P  R  I  R  *  L  C  S  A  I  T   : D  *  D  R  E  T  Y  S  S  S  R  G  N  R  N  E  Q  A  I   : E  R  R  N  L  Q  R  K  E  I  *  C  Y  L  P  F  L  W  L  S  S  T  G  I  I  A  I  K  V  *  L  *  L  C  L   </first_frame>
            <second_frame>  R  V  L  L  Y  Y  I  E  T  H  K  K  V  R  *  A  *  T  M  D  A  D  Y  G  I  A  R  E  L  S  D  L  Q  K  L  R  S  H  Y  H  P  E  L  P  P  C  L  Q  :  G  T  T  V  R  V  E  L  R  D  A  T  T  A  A  D  P  S  G  E  H  T  I  K  R  F  F  P  H  T  Y  G  Q  P  L  A  H  F  L  R  A  T  A  K  V  P  D  A  Q  I  I  T  E  H  P  A  I  R :   V  G  V  L  F  C  G  R  Q  S  P  G  G  H  N  V  I  W  G  L  H  D  A  L  K  V  H  N  P  N  N  I  L  L  G  F  L   : G  G  S  E  G  L  F  A  Q  K  T  L  E  I  T  D  D  V  L  A  T  Y  K  N  Q   : G  G  Y  D  M  L  G  R  T  K  D  Q  I  R  T  T  E  Q  V  N  A  A  M  A  A  C  K  A  L  K  L  D  G  L  V  I  I  G   : G  V  T  S  N  T  D  A  A  H  L  A  E  K  F  A  E  T  K  C  P  T  K  :  V  V  G  V  P  V  T  L  N  G  D  L  K  N  Q  F  V  E  A  N  V  G  F  D  T  I  C  K  :  V  N  S  Q  L  I  S  N  V  C  T  D  A  L  S  A  E  K  :  Y  Y  Y  F  I  R  L  M  G  R  K  A  S  H  V  A  L  E  C  T  L  Q  S  H  P  N  M  :  V  I  L  G  E  E  V  A  A  S  K  L  T  I  F  D  I  T  Q  Q  I  C  D  A  V  Q  A  R  A  E  H   : D  K  N  H  G  V  I  L  L  P  E  G  L  I  E  S  I  P  E  I  Y  A  L  L  Q  :  E  I  H  G  L  L  R  Q  G  V  S  A  D  N  I  S  S  Q  L  S  P  W  A  S  A  L  F  E  F  L  P  H  F  I  R  K  Q  :  L  L  L  H  P  E  S  D  D  S  A  Q  L  S  Q  :  I  E  T  E  K  L  I  A  H  L  V  E  T  E  M  N  K  R  L  :  K  E  G  T  Y  K  G  K  K  F  N  A  I  C  H  F  F  G  Y  Q  A  R  G  S  L  P  S  K  F  D  C  D  Y  A  Y  </second_frame>
            <third_frame>   E  Y  Y  Y  I  I  L  K  H  T  K  K  *  G  R  H  K  Q  W  M  Q  I  T  A  *  L  E  N  S  L  I  C  R  N  F  D  L  T  T  T  L  N  F  H  L  V  F  R :   V  L  L  S  G  *  N  S  V  M  Q  P  L  Q  Q  I  P  L  V  N  T  Q  L  N  A  S  S  H  T  L  M  V  N  H  *  P  I  F  L  G  Q  L  P  R  S  L  M  L  R  *  L  L  S  I  L  Q  L   : G  L  G  C  Y  F  V  V  D  N  L  L  E  D  T  T  *  Y  G  V  F  M  M  L  L  R  F  T  T  P  I  I  S  C  L  G  F  *  :  V  V  L  K  V  Y  L  H  K  K  L  *  R  S  P  M  M  F  L  L  P  I  R  I  K  :  V  D  M  T  C  W  G  G  Q  K  I  R  L  E  R  L  S  K  *  M  L  Q  W  L  H  A  K  L  *  N  W  M  V  L  S  S  L  E  :  E  *  H  Q  T  P  M  L  L  I  W  Q  K  N  L  Q  K  Q  N  A  L  Q  K :   W  L  V  F  L  L  P  *  M  G  I  S  R  I  S  L  L  K  R  T  L  V  L  T  Q  S  A  R :   L  T  P  N  *  L  A  M  Y  A  L  M  H  S  Q  L  R  S :   I  T  I  S  L  D  S  W  G  E  R  H  H  M  L  H  *  S  A  L  C  S  H  I  L  I  W :   *  F  L  E  R  R  *  L  H  Q  S  L  L  F  L  T  S  H  N  K  F  V  M  Q  F  R  L  G  L  N  M  :  I  K  I  M  V  S  S  C  C  L  K  G  L  L  K  V  F  L  K  Y  M  L  Y  C  R :   K  F  M  V  Y  S  G  K  V  F  L  L  I  T  F  P  L  N  Y  H  H  G  L  L  H  F  S  N  F  C  R  I  L  S  E  S  S :   F  S  Y  T  Q  N  Q  M  T  L  L  S  Y  H  R :   L  R  P  R  N  L  *  L  I  S  W  K  Q  K  *  T  S  D  * :   K  K  E  L  T  K  E  R  N  L  M  L  F  A  I  S  L  V  I  K  H  G  D  H  C  H  Q  S  L  I  V  T  M  P  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70597" stop="70505"/>
                    <exon start="69956" stop="69784"/>
                    <exon start="69447" stop="69335"/>
                    <exon start="69050" stop="68976"/>
                    <exon start="68890" stop="68777"/>
                    <exon start="68680" stop="68613"/>
                    <exon start="68457" stop="68374"/>
                    <exon start="67919" stop="67866"/>
                    <exon start="67654" stop="67574"/>
                    <exon start="67468" stop="67375"/>
                    <exon start="67293" stop="67220"/>
                    <exon start="66987" stop="66877"/>
                    <exon start="66794" stop="66750"/>
                    <exon start="66664" stop="66608"/>
                    <exon start="66099" stop="65995"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDADYGIARELSDLQKLRSHYHPELPPCLQGTTVRVELRDATTAADPSGEHTIKRFFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGVLFCGRQSPGGHNVIWGLHDALKVHNPNNILLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDGLVIIGGVTSNTDAAHLAEKFAETKCPTKVVGVPVTLNGDLKNQFVEANVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTIFDITQQICDAVQARAEHDKNHGVILLPEGLIESIPEIYALLQEIHGLLRQGVSADNISSQLSPWASALFEFLPHFIRKQLLLHPESDDSAQLSQIETEKLIAHLVETEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="73776" PGL_stop="71432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73776" e_stop="73235"/>
            <exon e_start="72309" e_stop="72086"/>
            <exon e_start="71870" e_stop="71432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="73776" e_stop="73235" e_length="542"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72309" e_stop="72086" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71870" e_stop="71432" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73776" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73710" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73693" stop="73252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73690" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73687" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73662" stop="73285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73235"/>
              <exon start="72309" stop="72211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73235"/>
              <exon start="72309" stop="72290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73654" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73654" stop="73235"/>
              <exon start="72309" stop="72209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73653" stop="73235"/>
              <exon start="72309" stop="72117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73651" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73613" stop="73442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73611" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73578" stop="73235"/>
              <exon start="72309" stop="72115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73527" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73498" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73474" stop="73235"/>
              <exon start="72309" stop="72212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73343" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72229" stop="72086"/>
              <exon start="71870" stop="71572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72224" stop="72086"/>
              <exon start="71870" stop="71445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72207" stop="72086"/>
              <exon start="71870" stop="71432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72194" stop="72086"/>
              <exon start="71870" stop="71447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558210" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72102" stop="72086"/>
              <exon start="71870" stop="71452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71788" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAGTAATTAAAAACTTGGAATTTCGTTGAAAGTGTTTGGAGCCTTAACCTCTAAGACACCTAACGTGATTATTAAATTGGGGACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG : GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG : AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCGAGATTCGGTT</gDNA_template>
            <first_frame> R  S  N  *  K  L  G  I  S  L  K  V  F  G  A  L  T  S  K  T  P  N  V  I  I  K  L  G  T  S  R  D  R  V  P  K  *  *  V  G  P  *  F  L  H  P  T  I  S  V  E  L  A  M  I  D  N  I  D  D  I  I  N  W  D  D  V  D  H  I  F  H  N  V  L  D  N  P  D  D  D  Q  F  T  L  H  D  S  S  P  Q  S  F  Q  Q  I  E  Q  L  L  M  N  D  D  D  F  G  L  V  S  D  P  Q  F  A  A  E  S  L  S  D  F  L  V  D  S  P  L  H  S  D  H  S  H  S  P  A  E  Q  A  I  G  F  S  D  P  K  V  S  S  A  D  Q  D  K  H  K  V  S  Q  S  P  S  D  G  D  D  E  L  N  N  H  D  P  V  D  K  K  R  K  R :   Q  L  R  N  R  D  A  A  V  R  S  R  E  R  K  K  L  Y  V  R  D  L  E  L  K  S  R  Y  F  E  S  E  C  K  R  L  G  F  V  L  Q  C  C  L  A  E  N  Q  A  L  R  F  S  L  H  N  S  S  A  N  G  V  S  M  T  K  Q  E  S  A  V  L  F  L   : E  S  L  L  L  G  S  L  L  W  F  L  G  I  T  C  L  L  I  L  P  S  Q  T  W  S  V  P  E  E  S  Q  G  S  R  N  H  G  L  L  V  P  I  K  E  G  K  K  T  S  R  I  L  L  F  L  S  F  M  M  S  K  R  C  K  A  S  R  S  R  M  K  L  N  P  H  P  L  G  V  V  M  *  L  V  V  I  K  S  F  P  I  G  G  S  W  F  L  L  S  S  L  V  F  Y  Q  R  F  S  C  M  C  L  A  L  T  S  E  G  *  S  S  L  L  L  V  N  D  L  *  A  I  *  Y  L  C  N  F  L  I  V  P  T  E  I  R   </first_frame>
            <second_frame>  E  V  I  K  N  L  E  F  R  *  K  C  L  E  P  *  P  L  R  H  L  T  *  L  L  N  W  G  H  P  E  I  G  S  Q  N  S  E  S  D  P  S  F  F  T  P  Q  S  P  S  N  W  R  *  S  I  T  S  M  I  S  S  T  G  T  M  *  I  T  S  S  T  T  F  *  T  I  P  T  M  I  N  S  L  F  M  I  P  P  H  S  H  S  S  R  S  S  S  F  L  *  T  M  T  I  S  V  L  S  L  I  L  S  L  L  P  N  L  F  L  T  S  S  S  I  L  L  F  T  P  I  I  L  T  L  L  L  N  K  P  L  D  S  P  I  P  R  F  Q  V  P  I  R  T  N  T  R  F  P  S  R  L  L  T  A  T  T  N  *  T  T  M  T  P  S  I  R  S  A  R   : G  N  *  G  I  E  M  Q  L  *  G  H  E  R  G  R  S  C  T  L  G  I  L  S  *  R  V  D  T  L  N  Q  N  A  K  G  W  G  L  F  S  S  A  V  L  L  K  I  K  L  Y  A  F  L  C  I  I  A  V  L  M  V  F  L  *  P  S  R  S  L  P  C  S  F  W  :  N  P  C  C  W  V  P  C  F  G  S  W  A  S  H  A  C  S  F  Y  P  A  K  P  G  Q  F  Q  K  K  V  R  E  A  E  T  T  G  F  W  F  Q  *  R  R  E  K  R  L  V  G  F  C  C  S  C  P  S  *  *  A  K  D  A  K  L  Q  D  R  G  *  S  S  T  P  I  P  W  E  L  *  C  D  S  L  *  S  N  L  F  P  *  V  D  H  G  S  F  *  V  L  *  F  F  I  R  D  S  L  V  C  V  L  L  *  H  L  K  D  E  V  H  C  Y  *  L  M  T  Y  E  L  Y  N  I  Y  A  T  F  *  *  F  Q  P  R  F  G  </second_frame>
            <third_frame>   K  *  L  K  T  W  N  F  V  E  S  V  W  S  L  N  L  *  D  T  *  R  D  Y  *  I  G  D  I  Q  R  S  G  P  K  I  V  S  R  T  L  V  S  S  P  H  N  L  R  R  T  G  D  D  R  *  H  R  *  Y  H  Q  L  G  R  C  R  S  H  L  P  Q  R  S  R  Q  S  R  R  *  S  I  H  S  S  *  F  L  P  T  V  I  P  A  D  R  A  A  S  Y  E  R  *  R  F  R  S  C  L  *  S  S  V  C  C  R  I  S  F  *  L  P  R  R  F  S  S  S  L  R  S  F  S  L  S  C  *  T  S  H  W  I  L  R  S  Q  G  F  K  C  R  S  G  Q  T  Q  G  F  P  V  A  F  *  R  R  R  R  T  K  Q  P  *  P  R  R  *  E  A  Q  E  :  A  I  E  E  *  R  C  S  C  E  V  T  R  E  E  E  V  V  R  *  G  S  *  V  E  E  *  I  L  *  I  R  M  Q  K  A  G  V  C  S  P  V  L  S  C  *  K  S  S  F  T  L  F  F  A  *  *  Q  C  *  W  C  F  Y  D  Q  A  G  V  C  R  A  L  F  G :   I  P  A  V  G  F  P  A  L  V  P  G  H  H  M  P  A  H  S  T  Q  P  N  L  V  S  S  R  R  K  S  G  K  Q  K  P  R  A  S  G  S  N  K  G  G  K  K  D  *  S  D  F  V  V  P  V  L  H  D  E  Q  K  M  Q  S  F  K  I  E  D  E  A  Q  P  P  S  L  G  S  C  D  V  T  R  C  D  Q  I  F  S  H  R  W  I  M  V  P  F  E  F  F  S  F  L  S  E  I  L  L  Y  V  S  C  F  D  I  *  R  M  K  F  T  V  I  S  *  *  L  M  S  Y  I  I  S  M  Q  L  F  N  S  S  N  R  D  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73650" stop="73235"/>
                    <exon start="72309" stop="72086"/>
                    <exon start="71870" stop="71623"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHPTISVELAMIDNIDDIINWDDVDHIFHNVLDNPDDDQFTLHDSSPQSFQQIEQLLMNDDDFGLVSDPQFAAESLSDFLVDSPLHSDHSHSPAEQAIGFSDPKVSSADQDKHKVSQSPSDGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNSSANGVSMTKQESAVLFLESLLLGSLLWFLGITCLLILPSQTWSVPEESQGSRNHGLLVPIKEGKKTSRILLFLSFMMSKRCKASRSRMKLNPHPLGVVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73693" e_stop="73235"/>
            <exon e_start="72309" e_stop="72107"/>
            <exon e_start="71870" e_stop="71440"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73693" e_stop="73235" e_length="459"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72309" e_stop="72107" e_length="203"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72106" i_stop="71871" i_length="236"/>
          </intron>
          <exon e_serial="3" e_score="0.932">
            <gDNA_exon_boundary e_start="71870" e_stop="71440" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73693" stop="73252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73662" stop="73285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73235"/>
              <exon start="72309" stop="72211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73235"/>
              <exon start="72309" stop="72290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73659" stop="73308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73654" stop="73235"/>
              <exon start="72309" stop="72209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73653" stop="73235"/>
              <exon start="72309" stop="72117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73613" stop="73442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73578" stop="73235"/>
              <exon start="72309" stop="72115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73474" stop="73235"/>
              <exon start="72309" stop="72212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73306" stop="73235"/>
              <exon start="72309" stop="72107"/>
              <exon start="71870" stop="71442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71788" stop="71440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG : GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGG : AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCGAG</gDNA_template>
            <first_frame> D  I  Q  R  S  G  P  K  I  V  S  R  T  L  V  S  S  P  H  N  L  R  R  T  G  D  D  R  *  H  R  *  Y  H  Q  L  G  R  C  R  S  H  L  P  Q  R  S  R  Q  S  R  R  *  S  I  H  S  S  *  F  L  P  T  V  I  P  A  D  R  A  A  S  Y  E  R  *  R  F  R  S  C  L  *  S  S  V  C  C  R  I  S  F  *  L  P  R  R  F  S  S  S  L  R  S  F  S  L  S  C  *  T  S  H  W  I  L  R  S  Q  G  F  K  C  R  S  G  Q  T  Q  G  F  P  V  A  F  *  R  R  R  R  T  K  Q  P  *  P  R  R  *  E  A  Q  E  :  A  I  E  E  *  R  C  S  C  E  V  T  R  E  E  E  V  V  R  *  G  S  *  V  E  E  *  I  L  *  I  R  M  Q  K  A  G  V  C  S  P  V  L  S  C  *  K  S  S  F  T  L  F  F  A  *  *  Q  C  *  W  C  F  Y  D  Q  A  G :   I  P  A  V  G  F  P  A  L  V  P  G  H  H  M  P  A  H  S  T  Q  P  N  L  V  S  S  R  R  K  S  G  K  Q  K  P  R  A  S  G  S  N  K  G  G  K  K  D  *  S  D  F  V  V  P  V  L  H  D  E  Q  K  M  Q  S  F  K  I  E  D  E  A  Q  P  P  S  L  G  S  C  D  V  T  R  C  D  Q  I  F  S  H  R  W  I  M  V  P  F  E  F  F  S  F  L  S  E  I  L  L  Y  V  S  C  F  D  I  *  R  M  K  F  T  V  I  S  *  *  L  M  S  Y  I  I  S  M  Q  L  F  N  S  S  N  R  </first_frame>
            <second_frame>  T  S  R  D  R  V  P  K  *  *  V  G  P  *  F  L  H  P  T  I  S  V  E  L  A  M  I  D  N  I  D  D  I  I  N  W  D  D  V  D  H  I  F  H  N  V  L  D  N  P  D  D  D  Q  F  T  L  H  D  S  S  P  Q  S  F  Q  Q  I  E  Q  L  L  M  N  D  D  D  F  G  L  V  S  D  P  Q  F  A  A  E  S  L  S  D  F  L  V  D  S  P  L  H  S  D  H  S  H  S  P  A  E  Q  A  I  G  F  S  D  P  K  V  S  S  A  D  Q  D  K  H  K  V  S  Q  S  P  S  D  G  D  D  E  L  N  N  H  D  P  V  D  K  K  R  K  R :   Q  L  R  N  R  D  A  A  V  R  S  R  E  R  K  K  L  Y  V  R  D  L  E  L  K  S  R  Y  F  E  S  E  C  K  R  L  G  F  V  L  Q  C  C  L  A  E  N  Q  A  L  R  F  S  L  H  N  S  S  A  N  G  V  S  M  T  K  Q   : E  S  L  L  L  G  S  L  L  W  F  L  G  I  T  C  L  L  I  L  P  S  Q  T  W  S  V  P  E  E  S  Q  G  S  R  N  H  G  L  L  V  P  I  K  E  G  K  K  T  S  R  I  L  L  F  L  S  F  M  M  S  K  R  C  K  A  S  R  S  R  M  K  L  N  P  H  P  L  G  V  V  M  *  L  V  V  I  K  S  F  P  I  G  G  S  W  F  L  L  S  S  L  V  F  Y  Q  R  F  S  C  M  C  L  A  L  T  S  E  G  *  S  S  L  L  L  V  N  D  L  *  A  I  *  Y  L  C  N  F  L  I  V  P  T  E </second_frame>
            <third_frame>   H  P  E  I  G  S  Q  N  S  E  S  D  P  S  F  F  T  P  Q  S  P  S  N  W  R  *  S  I  T  S  M  I  S  S  T  G  T  M  *  I  T  S  S  T  T  F  *  T  I  P  T  M  I  N  S  L  F  M  I  P  P  H  S  H  S  S  R  S  S  S  F  L  *  T  M  T  I  S  V  L  S  L  I  L  S  L  L  P  N  L  F  L  T  S  S  S  I  L  L  F  T  P  I  I  L  T  L  L  L  N  K  P  L  D  S  P  I  P  R  F  Q  V  P  I  R  T  N  T  R  F  P  S  R  L  L  T  A  T  T  N  *  T  T  M  T  P  S  I  R  S  A  R   : G  N  *  G  I  E  M  Q  L  *  G  H  E  R  G  R  S  C  T  L  G  I  L  S  *  R  V  D  T  L  N  Q  N  A  K  G  W  G  L  F  S  S  A  V  L  L  K  I  K  L  Y  A  F  L  C  I  I  A  V  L  M  V  F  L  *  P  S  R  :  N  P  C  C  W  V  P  C  F  G  S  W  A  S  H  A  C  S  F  Y  P  A  K  P  G  Q  F  Q  K  K  V  R  E  A  E  T  T  G  F  W  F  Q  *  R  R  E  K  R  L  V  G  F  C  C  S  C  P  S  *  *  A  K  D  A  K  L  Q  D  R  G  *  S  S  T  P  I  P  W  E  L  *  C  D  S  L  *  S  N  L  F  P  *  V  D  H  G  S  F  *  V  L  *  F  F  I  R  D  S  L  V  C  V  L  L  *  H  L  K  D  E  V  H  C  Y  *  L  M  T  Y  E  L  Y  N  I  Y  A  T  F  *  *  F  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73650" stop="73235"/>
                    <exon start="72309" stop="72107"/>
                    <exon start="71870" stop="71623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHPTISVELAMIDNIDDIINWDDVDHIFHNVLDNPDDDQFTLHDSSPQSFQQIEQLLMNDDDFGLVSDPQFAAESLSDFLVDSPLHSDHSHSPAEQAIGFSDPKVSSADQDKHKVSQSPSDGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNSSANGVSMTKQESLLLGSLLWFLGITCLLILPSQTWSVPEESQGSRNHGLLVPIKEGKKTSRILLFLSFMMSKRCKASRSRMKLNPHPLGVVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="79223" PGL_stop="74712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79223" e_stop="78890"/>
            <exon e_start="78714" e_stop="78655"/>
            <exon e_start="78531" e_stop="78387"/>
            <exon e_start="78292" e_stop="78135"/>
            <exon e_start="76386" e_stop="76305"/>
            <exon e_start="76231" e_stop="76165"/>
            <exon e_start="76093" e_stop="76039"/>
            <exon e_start="75692" e_stop="75524"/>
            <exon e_start="75427" e_stop="75339"/>
            <exon e_start="75177" e_stop="75097"/>
            <exon e_start="75026" e_stop="74712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.188" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.907" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79223" e_stop="78890" e_length="334"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.934">
            <gDNA_intron_boundary i_start="78889" i_stop="78715" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="78714" e_stop="78655" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78654" i_stop="78532" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78531" e_stop="78387" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.188" acc_prob="0.994">
            <gDNA_intron_boundary i_start="78386" i_stop="78293" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="78292" e_stop="78135" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.903">
            <gDNA_intron_boundary i_start="78134" i_stop="76387" i_length="1748"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="76386" e_stop="76305" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.997">
            <gDNA_intron_boundary i_start="76304" i_stop="76232" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="76231" e_stop="76165" e_length="67"/>
          </exon>
          <intron i_serial="6" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76164" i_stop="76094" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="76093" e_stop="76039" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.984">
            <gDNA_intron_boundary i_start="76038" i_stop="75693" i_length="346"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="75692" e_stop="75524" e_length="169"/>
          </exon>
          <intron i_serial="8" don_prob="0.907" acc_prob="0.879">
            <gDNA_intron_boundary i_start="75523" i_stop="75428" i_length="96"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="75427" e_stop="75339" e_length="89"/>
          </exon>
          <intron i_serial="9" don_prob="0.938" acc_prob="0.957">
            <gDNA_intron_boundary i_start="75338" i_stop="75178" i_length="161"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="75177" e_stop="75097" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.967">
            <gDNA_intron_boundary i_start="75096" i_stop="75027" i_length="70"/>
          </intron>
          <exon e_serial="11" e_score="0.975">
            <gDNA_exon_boundary e_start="75026" e_stop="74712" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79223" stop="78890"/>
              <exon start="78714" stop="78655"/>
              <exon start="78531" stop="78387"/>
              <exon start="78292" stop="78135"/>
              <exon start="76386" stop="76305"/>
              <exon start="76231" stop="76165"/>
              <exon start="76093" stop="76066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79175" stop="78890"/>
              <exon start="78714" stop="78655"/>
              <exon start="78531" stop="78387"/>
              <exon start="78292" stop="78149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76318" stop="76305"/>
              <exon start="76231" stop="76165"/>
              <exon start="76093" stop="76039"/>
              <exon start="75692" stop="75524"/>
              <exon start="75427" stop="75339"/>
              <exon start="75177" stop="75097"/>
              <exon start="75026" stop="74712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76317" stop="76305"/>
              <exon start="76231" stop="76165"/>
              <exon start="76093" stop="76039"/>
              <exon start="75692" stop="75524"/>
              <exon start="75427" stop="75339"/>
              <exon start="75177" stop="75097"/>
              <exon start="75026" stop="74914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304956" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATTGCGAAAATCTGGAATTTAAAGGAGGGTCCAACGGCTATGAAAGGAAGGGTTTAGGGCACAAAACAATTTCAAATTTGAAAGAAGGCTCTCAAAAAAACACCACCACAAGGAAGCAGCAAGAAGAAGAAATGGAGAAGGTAGGAGGAGATTACGTATTGGATAAGGAGGCAGAGTTCTTAGCGTCGAAGCAAGAGACTGGTCACGAGTGGGAACTCTTCAAGGAAAATGTCAGACCTTTGAAGAGAGGACGCAACGTTAATCTTCTCAATAATGCTCTTAAGTCTAGTACCGATTATCAACTCAAGAAATCTCTTCTTGACAAACGAAG : GGAATTTATTGAAGCAATTGACAAGTACAAAGGTGAAGATCCTCTTCACCCATGGCTCCA : GTGCATCAAGTGGGTGCAAGAGGCTTTCCCTCCCGGTGGGGACAGTTCTGGACTTATAGTTATTTATGAACAATGTGTCCGCACCTTTTGGCACGATGAACTATATAAGAATGACCTCCGTTACTTGAAAGTGTGGCTGGAATAT : GCTGAAAATTGTATGGATGCTGAAGTCATTTATAGCTTTCTGGAGGCTAACAAAATTGGACTGACACATTCTTCATTCTACATAGCCTATGCTTTGCACATGGAATCTCAAAATAAAATTAAAACAGCAAACGAGATCTTCAATCGGGGGCTATCTAT : GAATGCAGAACCTGAAGAGAAATTGAAAGTATCCTACAAGAAGTTTTTCAGTCGTTCAATGGGTCGCCCCAAAGCAGCAGAG : GAGGAGATAACAGAACACCAGCTTCCAATGAGAAGCTTTGGCACACTGTTGGCTAGGGGGGAAGCTC : GAAACCAAACAACAGGAACTTCTGAATTGTCCCGGAAGAAAATGAAACCAGATAG : AGCTCAGGGGAGCCTATTTTCCATTTACAAAGATGCAAATGCCGGAATGTCATCAACTCTTCAATCAGAAATACCAAAGCTAGAGAATACATCATGGCACTGTCTTGGTGCCCGAGCAGATAGGAACAAGGAGAATCAGGCAATCCCTTCAAAGTGGACATCTAATAAG : ATTCCTCAAAGACACGGGCTTAGAAATCGAGGAGCTACTACTACCACCACTCCGTGCCTAGAGATCTTTGTGGATGAGGAATGTGCCAA : AGCACAGGAGAAGGACTCTGCTGCTGGTGTAAAGGCTTCTAGTCTGCAGCTTAGACGAGGAGATGACAAAGACATAAAAAA : GGAGACTGAGTTGCTGAGGGAGAATCCCCTGCGTTATTTTCCACCAAGCTCATTACCAAGATGATCGATCTCACAGAAGAAAGTCATCATTGTGTGCTGGGATTTCTCATCTCAGAGTTACTCAACTTGTATCTTAAAAGTGTATGGAGACAATTCCTCTTTGCCCAGTGCAAGCACCGTTACAGATGTTCTAAATATATCGAGTGGAGTTGAGGAGACATTGTTGTATGTTTGGTTTTGGCAGGCTTGAGCCAAATCCTCCAGTATTTTGTTATTTAGATGGAATGATTTTATATGATTGCAACAGTTATTGAT</gDNA_template>
            <first_frame> N  I  A  K  I  W  N  L  K  E  G  P  T  A  M  K  G  R  V  *  G  T  K  Q  F  Q  I  *  K  K  A  L  K  K  T  P  P  Q  G  S  S  K  K  K  K  W  R  R  *  E  E  I  T  Y  W  I  R  R  Q  S  S  *  R  R  S  K  R  L  V  T  S  G  N  S  S  R  K  M  S  D  L  *  R  E  D  A  T  L  I  F  S  I  M  L  L  S  L  V  P  I  I  N  S  R  N  L  F  L  T  N  E   : G  N  L  L  K  Q  L  T  S  T  K  V  K  I  L  F  T  H  G  S   : S  A  S  S  G  C  K  R  L  S  L  P  V  G  T  V  L  D  L  *  L  F  M  N  N  V  S  A  P  F  G  T  M  N  Y  I  R  M  T  S  V  T  *  K  C  G  W  N  M :   L  K  I  V  W  M  L  K  S  F  I  A  F  W  R  L  T  K  L  D  *  H  I  L  H  S  T  *  P  M  L  C  T  W  N  L  K  I  K  L  K  Q  Q  T  R  S  S  I  G  G  Y  L   : *  M  Q  N  L  K  R  N  *  K  Y  P  T  R  S  F  S  V  V  Q  W  V  A  P  K  Q  Q  R :   R  R  *  Q  N  T  S  F  Q  *  E  A  L  A  H  C  W  L  G  G  K  L  :  E  T  K  Q  Q  E  L  L  N  C  P  G  R  K  *  N  Q  I   : E  L  R  G  A  Y  F  P  F  T  K  M  Q  M  P  E  C  H  Q  L  F  N  Q  K  Y  Q  S  *  R  I  H  H  G  T  V  L  V  P  E  Q  I  G  T  R  R  I  R  Q  S  L  Q  S  G  H  L  I  R :   F  L  K  D  T  G  L  E  I  E  E  L  L  L  P  P  L  R  A  *  R  S  L  W  M  R  N  V  P   : K  H  R  R  R  T  L  L  L  V  *  R  L  L  V  C  S  L  D  E  E  M  T  K  T  *  K   : R  R  L  S  C  *  G  R  I  P  C  V  I  F  H  Q  A  H  Y  Q  D  D  R  S  H  R  R  K  S  S  L  C  A  G  I  S  H  L  R  V  T  Q  L  V  S  *  K  C  M  E  T  I  P  L  C  P  V  Q  A  P  L  Q  M  F  *  I  Y  R  V  E  L  R  R  H  C  C  M  F  G  F  G  R  L  E  P  N  P  P  V  F  C  Y  L  D  G  M  I  L  Y  D  C  N  S  Y  *  </first_frame>
            <second_frame>  I  L  R  K  S  G  I  *  R  R  V  Q  R  L  *  K  E  G  F  R  A  Q  N  N  F  K  F  E  R  R  L  S  K  K  H  H  H  K  E  A  A  R  R  R  N  G  E  G  R  R  R  L  R  I  G  *  G  G  R  V  L  S  V  E  A  R  D  W  S  R  V  G  T  L  Q  G  K  C  Q  T  F  E  E  R  T  Q  R  *  S  S  Q  *  C  S  *  V  *  Y  R  L  S  T  Q  E  I  S  S  *  Q  T  K  :  G  I  Y  *  S  N  *  Q  V  Q  R  *  R  S  S  S  P  M  A  P  :  V  H  Q  V  G  A  R  G  F  P  S  R  W  G  Q  F  W  T  Y  S  Y  L  *  T  M  C  P  H  L  L  A  R  *  T  I  *  E  *  P  P  L  L  E  S  V  A  G  I   : C  *  K  L  Y  G  C  *  S  H  L  *  L  S  G  G  *  Q  N  W  T  D  T  F  F  I  L  H  S  L  C  F  A  H  G  I  S  K  *  N  *  N  S  K  R  D  L  Q  S  G  A  I  Y  :  E  C  R  T  *  R  E  I  E  S  I  L  Q  E  V  F  Q  S  F  N  G  S  P  Q  S  S  R   : G  G  D  N  R  T  P  A  S  N  E  K  L  W  H  T  V  G  *  G  G  S  S :   K  P  N  N  R  N  F  *  I  V  P  E  E  N  E  T  R  *  :  S  S  G  E  P  I  F  H  L  Q  R  C  K  C  R  N  V  I  N  S  S  I  R  N  T  K  A  R  E  Y  I  M  A  L  S  W  C  P  S  R  *  E  Q  G  E  S  G  N  P  F  K  V  D  I  *  *   : D  S  S  K  T  R  A  *  K  S  R  S  Y  Y  Y  H  H  S  V  P  R  D  L  C  G  *  G  M  C  Q  :  S  T  G  E  G  L  C  C  W  C  K  G  F  *  S  A  A  *  T  R  R  *  Q  R  H  K  K  :  G  D  *  V  A  E  G  E  S  P  A  L  F  S  T  K  L  I  T  K  M  I  D  L  T  E  E  S  H  H  C  V  L  G  F  L  I  S  E  L  L  N  L  Y  L  K  S  V  W  R  Q  F  L  F  A  Q  C  K  H  R  Y  R  C  S  K  Y  I  E  W  S  *  G  D  I  V  V  C  L  V  L  A  G  L  S  Q  I  L  Q  Y  F  V  I  *  M  E  *  F  Y  M  I  A  T  V  I  D </second_frame>
            <third_frame>   Y  C  E  N  L  E  F  K  G  G  S  N  G  Y  E  R  K  G  L  G  H  K  T  I  S  N  L  K  E  G  S  Q  K  N  T  T  T  R  K  Q  Q  E  E  E  M  E  K  V  G  G  D  Y  V  L  D  K  E  A  E  F  L  A  S  K  Q  E  T  G  H  E  W  E  L  F  K  E  N  V  R  P  L  K  R  G  R  N  V  N  L  L  N  N  A  L  K  S  S  T  D  Y  Q  L  K  K  S  L  L  D  K  R  R :   E  F  I  E  A  I  D  K  Y  K  G  E  D  P  L  H  P  W  L  Q :   C  I  K  W  V  Q  E  A  F  P  P  G  G  D  S  S  G  L  I  V  I  Y  E  Q  C  V  R  T  F  W  H  D  E  L  Y  K  N  D  L  R  Y  L  K  V  W  L  E  Y  :  A  E  N  C  M  D  A  E  V  I  Y  S  F  L  E  A  N  K  I  G  L  T  H  S  S  F  Y  I  A  Y  A  L  H  M  E  S  Q  N  K  I  K  T  A  N  E  I  F  N  R  G  L  S  M :   N  A  E  P  E  E  K  L  K  V  S  Y  K  K  F  F  S  R  S  M  G  R  P  K  A  A  E  :  E  E  I  T  E  H  Q  L  P  M  R  S  F  G  T  L  L  A  R  G  E  A   : R  N  Q  T  T  G  T  S  E  L  S  R  K  K  M  K  P  D  R :   A  Q  G  S  L  F  S  I  Y  K  D  A  N  A  G  M  S  S  T  L  Q  S  E  I  P  K  L  E  N  T  S  W  H  C  L  G  A  R  A  D  R  N  K  E  N  Q  A  I  P  S  K  W  T  S  N  K  :  I  P  Q  R  H  G  L  R  N  R  G  A  T  T  T  T  T  P  C  L  E  I  F  V  D  E  E  C  A  K :   A  Q  E  K  D  S  A  A  G  V  K  A  S  S  L  Q  L  R  R  G  D  D  K  D  I  K  K :   E  T  E  L  L  R  E  N  P  L  R  Y  F  P  P  S  S  L  P  R  *  S  I  S  Q  K  K  V  I  I  V  C  W  D  F  S  S  Q  S  Y  S  T  C  I  L  K  V  Y  G  D  N  S  S  L  P  S  A  S  T  V  T  D  V  L  N  I  S  S  G  V  E  E  T  L  L  Y  V  W  F  W  Q  A  *  A  K  S  S  S  I  L  L  F  R  W  N  D  F  I  *  L  Q  Q  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79221" stop="78890"/>
                    <exon start="78714" stop="78655"/>
                    <exon start="78531" stop="78387"/>
                    <exon start="78292" stop="78135"/>
                    <exon start="76386" stop="76305"/>
                    <exon start="76231" stop="76165"/>
                    <exon start="76093" stop="76039"/>
                    <exon start="75692" stop="75524"/>
                    <exon start="75427" stop="75339"/>
                    <exon start="75177" stop="75097"/>
                    <exon start="75026" stop="74963"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCENLEFKGGSNGYERKGLGHKTISNLKEGSQKNTTTRKQQEEEMEKVGGDYVLDKEAEFLASKQETGHEWELFKENVRPLKRGRNVNLLNNALKSSTDYQLKKSLLDKRREFIEAIDKYKGEDPLHPWLQCIKWVQEAFPPGGDSSGLIVIYEQCVRTFWHDELYKNDLRYLKVWLEYAENCMDAEVIYSFLEANKIGLTHSSFYIAYALHMESQNKIKTANEIFNRGLSMNAEPEEKLKVSYKKFFSRSMGRPKAAEEEITEHQLPMRSFGTLLARGEARNQTTGTSELSRKKMKPDRAQGSLFSIYKDANAGMSSTLQSEIPKLENTSWHCLGARADRNKENQAIPSKWTSNKIPQRHGLRNRGATTTTTPCLEIFVDEECAKAQEKDSAAGVKASSLQLRRGDDKDIKKETELLRENPLRYFPPSSLPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="81347" PGL_stop="81992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81347" e_stop="81992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="81347" e_stop="81992" e_length="646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81347" stop="81859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81386" stop="81859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81430" stop="81860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81564" stop="81992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242592" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81606" stop="81992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240784" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</gDNA_template>
            <first_frame> E  I  N  R  H  P  K  K  V  I  Y  N  K  *  L  *  W  L  *  T  *  S  R  H  L  Y  S  Q  F  M  L  L  V  *  L  D  P  G  G  K  E  C  K  R  *  *  *  *  *  V  D  Q  Q  E  Y  Q  S  I  R  G  R  R  *  E  K  N  S  *  R  K  *  *  R  R  K  *  R  K  L  R  R  Y  A  V  K  T  P  D  R  T  S  A  R  W  H  G  M  R  W  K  K  L  A  R  L  R  C  I  C  A  S  S  F  S  L  I  K  I  P  L  N  L  T  V  K  I  T  L  T  P  T  S  A  A  P  M  T  I  N  *  L  I  I  R  I  S  L  L  L  Y  L  D  L  S  T  V  F  L  S  N  L  V  *  L  Q  L  I  T  S  T  K  P  S  I  C  F  S  G  L  L  Y  *  C  I  F  T  A  L  *  S  I  C  *  V  S  S  N  V  M  S  I  Y  I  Q  T  N  K  T  S  R  Y  *  A  T  L  </first_frame>
            <second_frame>  K  S  T  D  I  R  K  K  S  S  I  I  N  N  C  D  G  F  E  L  E  A  G  I  Y  I  P  N  S  C  C  *  C  N  W  I  Q  E  E  R  S  A  K  G  D  D  D  D  E  W  I  S  R  S  T  K  V  *  G  D  A  D  E  R  K  T  A  D  G  N  D  R  E  E  S  E  G  S  *  G  G  M  Q  *  R  R  Q  I  G  R  V  Q  G  G  M  G  *  G  G  R  S  *  L  G  *  G  A  F  A  H  Q  A  S  A  *  S  R  S  P  *  T  L  L  S  K  *  P  *  R  R  R  V  P  H  L  *  P  L  I  N  *  L  L  G  F  H  S  C  C  T  W  T  C  L  L  Y  F  S  P  I  *  Y  D  Y  S  *  L  L  V  Q  N  P  P  S  A  F  Q  V  C  Y  I  S  V  S  S  L  L  Y  E  A  F  V  R  *  V  Q  M  S  C  P  Y  I  Y  R  R  I  K  Q  V  D  I  E  R  R  * </second_frame>
            <third_frame>   N  Q  Q  T  S  E  K  S  H  L  *  *  I  I  V  M  A  L  N  L  K  Q  A  S  I  F  P  I  H  V  A  S  V  T  G  S  R  R  K  G  V  Q  K  V  M  M  M  M  S  G  S  A  G  V  P  K  Y  K  G  T  Q  M  R  E  K  Q  L  T  E  M  I  E  K  K  V  K  E  A  K  E  V  C  S  E  D  A  R  S  D  E  C  K  V  A  W  D  E  V  E  E  V  S  *  A  K  V  H  L  R  I  K  L  Q  L  N  Q  D  P  L  E  P  Y  C  Q  N  N  P  D  A  D  E  C  R  T  Y  D  H  *  L  I  N  Y  *  D  F  T  L  V  V  L  G  L  V  Y  C  I  S  L  Q  F  S  M  I  T  V  N  Y  *  Y  K  T  L  H  L  L  F  R  F  V  I  L  V  Y  L  H  C  F  M  K  H  L  L  G  K  F  K  C  H  V  H  I  Y  T  D  E  *  N  K  *  I  L  S  D  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81385" stop="81657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVMALNLKQASIFPIHVASVTGSRRKGVQKVMMMMSGSAGVPKYKGTQMREKQLTEMIEKKVKEAKEVCSEDARSDECKVAWDEVEEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81347" e_stop="81859"/>
            <exon e_start="81959" e_stop="81968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.711" e_score="0.992"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="81347" e_stop="81859" e_length="513"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.711">
            <gDNA_intron_boundary i_start="81860" i_stop="81958" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.700">
            <gDNA_exon_boundary e_start="81959" e_stop="81968" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81347" stop="81859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81386" stop="81859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623200" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81670" stop="81859"/>
              <exon start="81959" stop="81968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81670" stop="81859"/>
              <exon start="81959" stop="81968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAA : ACGAATAAAA</gDNA_template>
            <first_frame> E  I  N  R  H  P  K  K  V  I  Y  N  K  *  L  *  W  L  *  T  *  S  R  H  L  Y  S  Q  F  M  L  L  V  *  L  D  P  G  G  K  E  C  K  R  *  *  *  *  *  V  D  Q  Q  E  Y  Q  S  I  R  G  R  R  *  E  K  N  S  *  R  K  *  *  R  R  K  *  R  K  L  R  R  Y  A  V  K  T  P  D  R  T  S  A  R  W  H  G  M  R  W  K  K  L  A  R  L  R  C  I  C  A  S  S  F  S  L  I  K  I  P  L  N  L  T  V  K  I  T  L  T  P  T  S  A  A  P  M  T  I  N  *  L  I  I  R  I  S  L  L  L  Y  L  D  L  S  T  V  F  L  S  N  L  V  *  L  Q  L  I  T  S  T  K  :  T  N  K  </first_frame>
            <second_frame>  K  S  T  D  I  R  K  K  S  S  I  I  N  N  C  D  G  F  E  L  E  A  G  I  Y  I  P  N  S  C  C  *  C  N  W  I  Q  E  E  R  S  A  K  G  D  D  D  D  E  W  I  S  R  S  T  K  V  *  G  D  A  D  E  R  K  T  A  D  G  N  D  R  E  E  S  E  G  S  *  G  G  M  Q  *  R  R  Q  I  G  R  V  Q  G  G  M  G  *  G  G  R  S  *  L  G  *  G  A  F  A  H  Q  A  S  A  *  S  R  S  P  *  T  L  L  S  K  *  P  *  R  R  R  V  P  H  L  *  P  L  I  N  *  L  L  G  F  H  S  C  C  T  W  T  C  L  L  Y  F  S  P  I  *  Y  D  Y  S  *  L  L  V  Q  K :   R  I  K </second_frame>
            <third_frame>   N  Q  Q  T  S  E  K  S  H  L  *  *  I  I  V  M  A  L  N  L  K  Q  A  S  I  F  P  I  H  V  A  S  V  T  G  S  R  R  K  G  V  Q  K  V  M  M  M  M  S  G  S  A  G  V  P  K  Y  K  G  T  Q  M  R  E  K  Q  L  T  E  M  I  E  K  K  V  K  E  A  K  E  V  C  S  E  D  A  R  S  D  E  C  K  V  A  W  D  E  V  E  E  V  S  *  A  K  V  H  L  R  I  K  L  Q  L  N  Q  D  P  L  E  P  Y  C  Q  N  N  P  D  A  D  E  C  R  T  Y  D  H  *  L  I  N  Y  *  D  F  T  L  V  V  L  G  L  V  Y  C  I  S  L  Q  F  S  M  I  T  V  N  Y  *  Y  K   : N  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81385" stop="81657"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVMALNLKQASIFPIHVASVTGSRRKGVQKVMMMMSGSAGVPKYKGTQMREKQLTEMIEKKVKEAKEVCSEDARSDECKVAWDEVEEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="82646" PGL_stop="91456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82646" e_stop="82762"/>
            <exon e_start="82828" e_stop="82994"/>
            <exon e_start="83137" e_stop="83283"/>
            <exon e_start="83895" e_stop="84027"/>
            <exon e_start="84759" e_stop="84851"/>
            <exon e_start="90916" e_stop="91456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82646" e_stop="82762" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.955">
            <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82828" e_stop="82994" e_length="167"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82995" i_stop="83136" i_length="142"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83137" e_stop="83283" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.933">
            <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83895" e_stop="84027" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.966">
            <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84759" e_stop="84851" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="90916" e_stop="91456" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82646" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82646" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82652" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82652" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82654" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82655" stop="82762"/>
              <exon start="82828" stop="82994"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="83942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83939" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83941" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91060" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91096" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATGACACTGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG : CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAG : TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA : TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG : GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG : GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAA</gDNA_template>
            <first_frame> V  M  T  L  L  Q  L  P  H  L  S  S  S  V  P  K  D  Q  R  L  Y  R  N  A  S  A  L  D  P  F  S  R  H  K  A  S  W  Q  E  :  L  A  G  V  L  V  F  S  A  I  P  F  T  A  V  K  A  I  A  N  S  T  F  G  E  T  L  R  K  R  L  E  E  R  K  K  V  A  V  E  N  S  A  K  F  K  A  L  A  L  M  A  R  N  D  S :   I  W  Y  G  E  D  R  P  R  W  L  G  P  I  S  Y  D  Y  P  A  Y  L  N  G  E  L  P  G  D  Y  G  F  D  I  C  G  L  S  K  D  P  V  A  L  Q  N  Y  F  N :   Y  E  I  L  H  G  R  W  A  M  L  A  A  L  G  A  L  I  P  E  L  L  N  L  T  G  L  F  Q  F  V  E  P  V  W  W  R  V  G  Y  S  K  L  K  :  G  D  T  L  D  Y  L  G  I  P  G  L  H  L  A  G  S  Q  G  V  I  V  I  A  I  C  Q  A  L  L  M  :  V  G  P  E  Y  A  R  Y  C  G  I  E  A  L  E  P  L  G  I  Y  L  P  G  D  I  N  Y  P  G  G  V  L  F  D  P  L  N  L  S  K  D  P  M  A  F  E  E  L  K  V  K  E  I  K  N  G  R  L  A  M  V  A  W  L  G  F  Y  V  Q  A  A  L  T  G  K  G  P  V  Q  N  L  L  E  H  I  S  D  P  F  H  N  N  L  L  S  I  L  K  S  L  *  E  N  S  L  I  Q  S  *  Q  W  G  L  S  L  P  G  I  I  V  L  S  S  L  Y  L  R  L  *  Y  V  N  S  *  F  I  *  K  *  C  H  T  *  K  R  *  R  H  V  V  P  R  R  V  F  E  V  V  H  T  N  E  P  Y  M  V  L  F  I  M  G  C  *  M  T  I  V  I  V  *  </first_frame>
            <second_frame>  S  *  H  C  F  S  F  P  I  Y  R  P  P  S  L  K  T  K  G  C  I  A  M  Q  V  H  S  I  P  F  R  V  T  R  L  H  G  K  S :   L  P  A  F  W  Y  S  Q  R  F  L  S  P  L  S  K  L  S  P  T  V  P  S  V  K  H  S  V  N  D  *  K  R  E  R  R  L  Q  *  R  I  Q  L  S  S  K  H  L  H  *  W  Q  E  T  I   : V  S  G  M  E  K  I  A  P  A  G  L  V  Q  F  L  M  T  I  L  L  I  L  M  G  S  Y  P  G  T  M  D  L  I  S  A  G  *  A  R  I  P  W  P  F  K  T  T  L   : I  M  K  Y  C  M  V  V  G  L  C  W  L  L  L  V  L  *  F  Q  N  F  *  T  *  Q  D  F  S  S  L  W  N  L  F  G  G  E  W  A  T  Q  S  L  R :   E  I  H  L  T  I  *  G  S  L  D  S  I  *  L  E  V  K  E  S  L  S  *  P  F  A  K  P  F  *  W :   L  D  Q  N  M  Q  G  I  V  E  L  R  L  W  N  R  *  E  F  T  C  L  V  T  S  T  I  L  E  V  F  F  L  I  H  *  I  S  L  K  I  R  W  L  L  K  S  *  R  L  K  K  *  K  M  G  A  L  L  W  L  P  G  *  A  F  M  S  K  P  L  L  R  V  K  A  L  C  K  T  F  W  S  I  S  Q  I  H  S  T  I  T  C  S  P  F  *  S  L  C  K  R  I  H  L  S  K  V  D  N  G  V  *  A  S  Q  V  *  L  F  C  L  L  Y  I  *  G  C  N  M  *  T  H  N  S  S  E  N  S  V  I  P  R  K  G  E  D  M  L  C  P  E  E  Y  L  R  L  S  I  P  M  N  L  I  W  S  C  L  *  W  D  V  K  *  L  L  L  L  F  K </second_frame>
            <third_frame>   H  D  T  A  S  A  S  P  S  I  V  L  R  P  *  R  P  K  V  V  S  Q  C  K  C  T  R  S  L  F  A  S  Q  G  F  M  A  R   : A  C  R  R  S  G  I  L  S  D  S  F  H  R  C  Q  S  Y  R  Q  Q  Y  L  R  *  N  T  P  *  T  I  R  R  E  K  E  G  C  S  R  E  F  S  *  V  Q  S  T  C  T  N  G  K  K  R  *  :  Y  L  V  W  R  R  S  P  P  L  A  W  S  N  F  L  *  L  S  C  L  S  *  W  G  A  T  R  G  L  W  I  *  Y  L  R  V  E  Q  G  S  R  G  P  S  K  L  L  *  :  L  *  N  I  A  W  S  L  G  Y  A  G  C  S  W  C  F  D  S  R  T  F  K  P  D  R  T  F  P  V  C  G  T  C  L  V  A  S  G  L  L  K  A  *   : G  R  Y  T  *  L  F  R  D  P  W  T  P  F  S  W  K  S  R  S  H  C  H  S  H  L  P  S  P  F  D   : G  W  T  R  I  C  K  V  L  W  N  *  G  F  G  T  V  R  N  L  L  A  W  *  H  Q  L  S  W  R  C  S  F  *  S  I  E  S  L  *  R  S  D  G  F  *  R  A  K  G  *  R  N  K  K  W  A  P  C  Y  G  C  L  V  R  L  L  C  P  S  R  S  Y  G  *  R  P  C  A  K  P  S  G  A  Y  L  R  S  I  P  Q  *  L  A  L  H  S  K  V  S  V  R  E  F  T  Y  P  K  L  T  M  G  F  K  P  P  R  Y  N  C  S  V  F  F  I  F  K  A  V  I  C  E  L  I  I  H  L  K  I  V  S  Y  L  E  K  V  K  T  C  C  A  Q  K  S  I  *  G  C  P  Y  Q  *  T  L  Y  G  L  V  Y  N  G  M  L  N  D  Y  C  Y  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82646" stop="82762"/>
                    <exon start="82828" stop="82994"/>
                    <exon start="83137" stop="83283"/>
                    <exon start="83895" stop="84027"/>
                    <exon start="84759" stop="84851"/>
                    <exon start="90916" stop="91218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMTLLQLPHLSSSVPKDQRLYRNASALDPFSRHKASWQELAGVLVFSAIPFTAVKAIANSTFGETLRKRLEERKKVAVENSAKFKALALMARNDSIWYGEDRPRWLGPISYDYPAYLNGELPGDYGFDICGLSKDPVALQNYFNYEILHGRWAMLAALGALIPELLNLTGLFQFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDPMAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLLEHISDPFHNNLLSILKSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="82656" e_stop="82762"/>
            <exon e_start="82828" e_stop="83012"/>
            <exon e_start="83137" e_stop="83283"/>
            <exon e_start="83895" e_stop="84027"/>
            <exon e_start="84759" e_stop="84851"/>
            <exon e_start="90916" e_stop="91456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.955" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.831" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="82656" e_stop="82762" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.955">
            <gDNA_intron_boundary i_start="82763" i_stop="82827" i_length="65"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82828" e_stop="83012" e_length="185"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="83013" i_stop="83136" i_length="124"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="83137" e_stop="83283" e_length="147"/>
          </exon>
          <intron i_serial="3" don_prob="0.831" acc_prob="0.933">
            <gDNA_intron_boundary i_start="83284" i_stop="83894" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="83895" e_stop="84027" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.966">
            <gDNA_intron_boundary i_start="84028" i_stop="84758" i_length="731"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="84759" e_stop="84851" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="84852" i_stop="90915" i_length="6064"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="90916" e_stop="91456" e_length="541"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82656" stop="82762"/>
              <exon start="82828" stop="83012"/>
              <exon start="83137" stop="83283"/>
              <exon start="83895" stop="83936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83153" stop="83283"/>
              <exon start="83895" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83939" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83941" stop="84027"/>
              <exon start="84759" stop="84851"/>
              <exon start="90916" stop="91140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91060" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91096" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTTCAGCTTCCCCATCTATCGTCCTCCGTCCCTAAAGACCAAAGGTTGTATCGCAATGCAAGTGCACTCGATCCCTTTTCGCGTCACAAGGCTTCATGGCAAGAG : CTTGCCGGCGTTCTGGTATTCTCAGCGATTCCTTTCACCGCTGTCAAAGCTATCGCCAACAGTACCTTCGGTGAAACACTCCGTAAACGATTAGAAGAGAGAAAGAAGGTTGCAGTAGAGAATTCAGCTAAGTTCAAAGCACTTGCACTAATGGCAAGAAACGATAGGTAAATCCCTATCTCTTG : TATCTGGTATGGAGAAGATCGCCCCCGCTGGCTTGGTCCAATTTCTTATGACTATCCTGCTTATCTTAATGGGGAGCTACCCGGGGACTATGGATTTGATATCTGCGGGTTGAGCAAGGATCCCGTGGCCCTTCAAAACTACTTTAA : TTATGAAATATTGCATGGTCGTTGGGCTATGCTGGCTGCTCTTGGTGCTTTGATTCCAGAACTTTTAAACCTGACAGGACTTTTCCAGTTTGTGGAACCTGTTTGGTGGCGAGTGGGCTACTCAAAGCTTAAG : GGAGATACACTTGACTATTTAGGGATCCCTGGACTCCATTTAGCTGGAAGTCAAGGAGTCATTGTCATAGCCATTTGCCAAGCCCTTTTGATG : GTTGGACCAGAATATGCAAGGTATTGTGGAATTGAGGCTTTGGAACCGTTAGGAATTTACTTGCCTGGTGACATCAACTATCCTGGAGGTGTTCTTTTTGATCCATTGAATCTCTCTAAAGATCCGATGGCTTTTGAAGAGCTAAAGGTTAAAGAAATAAAAAATGGGCGCCTTGCTATGGTTGCCTGGTTAGGCTTTTATGTCCAAGCCGCTCTTACGGGTAAAGGCCCTGTGCAAAACCTTCTGGAGCATATCTCAGATCCATTCCACAATAACTTGCTCTCCATTCTAAAGTCTCTGTAAGAGAATTCACTTATCCAAAGTTGACAATGGGGTTTAAGCCTCCCAGGTATAATTGTTCTGTCTTCTTTATATTTAAGGCTGTAATATGTGAACTCATAATTCATCTGAAAATAGTGTCATACCTAGAAAAGGTGAAGACATGTTGTGCCCAGAAGAGTATTTGAGGTTGTCCATACCAATGAACCTTATATGGTCTTGTTTATAATGGGATGTTAAATGACTATTGTTATTGTTTAAA</gDNA_template>
            <first_frame> C  F  S  F  P  I  Y  R  P  P  S  L  K  T  K  G  C  I  A  M  Q  V  H  S  I  P  F  R  V  T  R  L  H  G  K  S :   L  P  A  F  W  Y  S  Q  R  F  L  S  P  L  S  K  L  S  P  T  V  P  S  V  K  H  S  V  N  D  *  K  R  E  R  R  L  Q  *  R  I  Q  L  S  S  K  H  L  H  *  W  Q  E  T  I  G  K  S  L  S  L   : V  S  G  M  E  K  I  A  P  A  G  L  V  Q  F  L  M  T  I  L  L  I  L  M  G  S  Y  P  G  T  M  D  L  I  S  A  G  *  A  R  I  P  W  P  F  K  T  T  L   : I  M  K  Y  C  M  V  V  G  L  C  W  L  L  L  V  L  *  F  Q  N  F  *  T  *  Q  D  F  S  S  L  W  N  L  F  G  G  E  W  A  T  Q  S  L  R :   E  I  H  L  T  I  *  G  S  L  D  S  I  *  L  E  V  K  E  S  L  S  *  P  F  A  K  P  F  *  W :   L  D  Q  N  M  Q  G  I  V  E  L  R  L  W  N  R  *  E  F  T  C  L  V  T  S  T  I  L  E  V  F  F  L  I  H  *  I  S  L  K  I  R  W  L  L  K  S  *  R  L  K  K  *  K  M  G  A  L  L  W  L  P  G  *  A  F  M  S  K  P  L  L  R  V  K  A  L  C  K  T  F  W  S  I  S  Q  I  H  S  T  I  T  C  S  P  F  *  S  L  C  K  R  I  H  L  S  K  V  D  N  G  V  *  A  S  Q  V  *  L  F  C  L  L  Y  I  *  G  C  N  M  *  T  H  N  S  S  E  N  S  V  I  P  R  K  G  E  D  M  L  C  P  E  E  Y  L  R  L  S  I  P  M  N  L  I  W  S  C  L  *  W  D  V  K  *  L  L  L  L  F  K </first_frame>
            <second_frame>  A  S  A  S  P  S  I  V  L  R  P  *  R  P  K  V  V  S  Q  C  K  C  T  R  S  L  F  A  S  Q  G  F  M  A  R   : A  C  R  R  S  G  I  L  S  D  S  F  H  R  C  Q  S  Y  R  Q  Q  Y  L  R  *  N  T  P  *  T  I  R  R  E  K  E  G  C  S  R  E  F  S  *  V  Q  S  T  C  T  N  G  K  K  R  *  V  N  P  Y  L  L  :  Y  L  V  W  R  R  S  P  P  L  A  W  S  N  F  L  *  L  S  C  L  S  *  W  G  A  T  R  G  L  W  I  *  Y  L  R  V  E  Q  G  S  R  G  P  S  K  L  L  *  :  L  *  N  I  A  W  S  L  G  Y  A  G  C  S  W  C  F  D  S  R  T  F  K  P  D  R  T  F  P  V  C  G  T  C  L  V  A  S  G  L  L  K  A  *   : G  R  Y  T  *  L  F  R  D  P  W  T  P  F  S  W  K  S  R  S  H  C  H  S  H  L  P  S  P  F  D   : G  W  T  R  I  C  K  V  L  W  N  *  G  F  G  T  V  R  N  L  L  A  W  *  H  Q  L  S  W  R  C  S  F  *  S  I  E  S  L  *  R  S  D  G  F  *  R  A  K  G  *  R  N  K  K  W  A  P  C  Y  G  C  L  V  R  L  L  C  P  S  R  S  Y  G  *  R  P  C  A  K  P  S  G  A  Y  L  R  S  I  P  Q  *  L  A  L  H  S  K  V  S  V  R  E  F  T  Y  P  K  L  T  M  G  F  K  P  P  R  Y  N  C  S  V  F  F  I  F  K  A  V  I  C  E  L  I  I  H  L  K  I  V  S  Y  L  E  K  V  K  T  C  C  A  Q  K  S  I  *  G  C  P  Y  Q  *  T  L  Y  G  L  V  Y  N  G  M  L  N  D  Y  C  Y  C  L   </second_frame>
            <third_frame>   L  Q  L  P  H  L  S  S  S  V  P  K  D  Q  R  L  Y  R  N  A  S  A  L  D  P  F  S  R  H  K  A  S  W  Q  E  :  L  A  G  V  L  V  F  S  A  I  P  F  T  A  V  K  A  I  A  N  S  T  F  G  E  T  L  R  K  R  L  E  E  R  K  K  V  A  V  E  N  S  A  K  F  K  A  L  A  L  M  A  R  N  D  R  *  I  P  I  S  C :   I  W  Y  G  E  D  R  P  R  W  L  G  P  I  S  Y  D  Y  P  A  Y  L  N  G  E  L  P  G  D  Y  G  F  D  I  C  G  L  S  K  D  P  V  A  L  Q  N  Y  F  N :   Y  E  I  L  H  G  R  W  A  M  L  A  A  L  G  A  L  I  P  E  L  L  N  L  T  G  L  F  Q  F  V  E  P  V  W  W  R  V  G  Y  S  K  L  K  :  G  D  T  L  D  Y  L  G  I  P  G  L  H  L  A  G  S  Q  G  V  I  V  I  A  I  C  Q  A  L  L  M  :  V  G  P  E  Y  A  R  Y  C  G  I  E  A  L  E  P  L  G  I  Y  L  P  G  D  I  N  Y  P  G  G  V  L  F  D  P  L  N  L  S  K  D  P  M  A  F  E  E  L  K  V  K  E  I  K  N  G  R  L  A  M  V  A  W  L  G  F  Y  V  Q  A  A  L  T  G  K  G  P  V  Q  N  L  L  E  H  I  S  D  P  F  H  N  N  L  L  S  I  L  K  S  L  *  E  N  S  L  I  Q  S  *  Q  W  G  L  S  L  P  G  I  I  V  L  S  S  L  Y  L  R  L  *  Y  V  N  S  *  F  I  *  K  *  C  H  T  *  K  R  *  R  H  V  V  P  R  R  V  F  E  V  V  H  T  N  E  P  Y  M  V  L  F  I  M  G  C  *  M  T  I  V  I  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82999" stop="83012"/>
                    <exon start="83137" stop="83283"/>
                    <exon start="83895" stop="84027"/>
                    <exon start="84759" stop="84851"/>
                    <exon start="90916" stop="91218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPISCIWYGEDRPRWLGPISYDYPAYLNGELPGDYGFDICGLSKDPVALQNYFNYEILHGRWAMLAALGALIPELLNLTGLFQFVEPVWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDPMAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLLEHISDPFHNNLLSILKSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82658" stop="82762"/>
                    <exon start="82828" stop="82998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQLPHLSSSVPKDQRLYRNASALDPFSRHKASWQELAGVLVFSAIPFTAVKAIANSTFGETLRKRLEERKKVAVENSAKFKALALMARNDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="87184" e_stop="87743"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87184" e_stop="87743" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87184" stop="87743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTAACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</gDNA_template>
            <first_frame> K  N  T  H  H  Y  W  H  F  *  T  I  T  C  *  H  L  G  S  I  S  N  N  N  S  *  *  L  Q  V  F  H  Y  L  S  R  *  L  *  *  I  Y  L  D  T  T  S  K  L  *  K  Q  C  F  P  C  P  *  S  L  Y  T  H  G  *  E  P  V  Q  H  H  C  *  N  H  Q  I  R  *  W  F  G  I  H  *  Q  *  N  H  S  I  F  S  I  Q  R  D  H  P  S  E  I  L  P  L  Y  S  S  T  K  W  C  G  R  K  K  A  Q  I  Y  S  *  N  S  K  G  S  T  F  S  V  *  T  P  S  E  I  L  E  *  M  *  L  A  S  T  Y  L  I  N  R  L  P  S  F  P  L  H  N  K  T  P  Y  E  I  L  Y  K  H  K  P  I  Y  S  H  L  K  S  F  G  C  L  C  Y  P  T   </first_frame>
            <second_frame>  K  T  H  T  T  T  G  I  F  E  L  L  H  V  D  I  W  G  P  Y  Q  T  T  T  H  D  N  F  K  Y  F  I  T  L  V  D  D  F  S  K  S  T  W  T  Q  L  L  S  C  K  S  N  A  F  H  V  L  K  A  F  I  L  M  V  E  N  Q  F  S  T  T  V  K  T  I  R  S  D  N  G  L  E  F  T  S  N  E  T  T  L  F  F  Q  S  K  G  I  I  H  Q  K  S  C  P  Y  T  P  Q  Q  N  G  V  V  E  R  K  H  K  F  I  L  E  T  A  R  A  L  L  F  Q  S  K  L  P  V  K  Y  W  S  E  C  N  L  L  P  H  I  L  *  I  D  Y  L  L  F  L  S  T  I  K  L  H  M  K  F  Y  I  N  T  N  L  S  T  L  T  *  R  V  L  D  V  Y  V  I  L  L  </second_frame>
            <third_frame>   K  H  T  P  L  L  A  F  L  N  Y  Y  M  L  T  S  G  V  H  I  K  Q  Q  L  M  I  T  S  S  I  S  L  P  *  *  M  T  L  V  N  L  P  G  H  N  F  *  A  V  K  A  M  L  S  M  S  L  K  P  L  Y  S  W  L  R  T  S  S  A  P  L  L  K  P  S  D  Q  I  M  V  W  N  S  L  A  M  K  P  L  Y  F  F  N  P  K  G  S  S  I  R  N  P  A  P  I  L  L  N  K  M  V  W  S  K  E  S  T  N  L  F  L  K  Q  Q  G  L  Y  F  F  S  L  N  S  Q  *  N  I  G  V  N  V  T  C  F  H  I  S  Y  K  *  T  T  F  F  S  S  P  Q  *  N  S  I  *  N  F  I  *  T  Q  T  Y  L  L  S  P  K  E  F  W  M  F  M  L  S  Y  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87185" stop="87631"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQNGVVERKHKFILETARALLFQSKLPVKYWSECNLLPHIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="94489" PGL_stop="96154"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94489" e_stop="95463"/>
            <exon e_start="95916" e_stop="96154"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="94489" e_stop="95463" e_length="975"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95464" i_stop="95915" i_length="452"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="95916" e_stop="96154" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94489" stop="94999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94521" stop="94984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94651" stop="95342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94917" stop="95463"/>
              <exon start="95916" stop="95947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95917" stop="96154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612325" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAACTCCAAGTAATTTGGTAGTGACATTGCTCGCCTTCACTCTTGTGATGCTCATTTGGAATCTCCAACCTTACTACGATACCATCCTTAATCCCCCTGCATCCTCCAACATTACCGACCCTAACAAACGAACCTTCATTACCTACGGCAATGCCGCCTCTCTCTTCGTCCAGATGGGAGCCTATCGCGGCGGTCCCACTACTTTCGCCGTCGTCGGTCTCGCTTCCAAGCCGCTTCACGTCTTTGGCCGCCCATGGTATAAATGCGAGTGGATCCCCAATACTAATACAAACTCATCTAAGGCCAAAGCCTATAAGATCCTCCCTGACTGGGGTTACGGCCGTGTCTACACTGTGGTGGTTGTGAACTGCACATTTACTGTGAATCCTAACCTTGATAATAACGGAGGGAAGCTCATTCTCTACGCTTACTATAGTGAGTCACCCAAGAGATACGAGAAAATCACAGCATTGGAGGAAGCACCAGGGTCTTACAACCAATCCAAGTTCAGCCCGCCATATACCTACGAGTATCTGTATTGCGGTTCCTCCTTGTATGGAAATTTGAGTGCATCTAGGATGAGGGAGTGGATGGCCTATCACGCCTGGTTTTTCGGGCCCAGCTCCCATTTCGTGTTTCACGACGCCGGCGGGGTGTCATCCGAGGTAAGGGCCGTGCTGGAGCCGTGGGTACAGGCTGGTAGGGTCACGCTTCAGGATATAAGGGACCAATCCGAGTTCGATGGCTACTATTACAACCAGTTTTTGGTGGTGAATGATTGCCTCCATCGCTACAGACACTCTGCCTATTGGACCTTCTACTTTGATGTTGACGAGTACATATATCTTCCTGATGCCAACACTACTCTCGAATCTGTGTTAAGAGACTTCTCCAACAATACTCAGTTCACCATTGAGCAAAATGCCATGTCCAGCATCCTCTGTTTGAACAATTCCTCTCAAAACTATTCCAG : GCTGTGGGGCTTTGAGAAGTTGTTGTTCAGAGACTCGAGAAGTAACATTAGGAGAGATCGCAAGTATGCCATACAGGCAAAAAATGCGTATGCAACAGGTGTGCACATGTCGGAAAATGTAGTAGGAGGGACTTTGCACCAGACAGAAACTAAGATCCGCTACTATCATTATCACAACTCCATCACGGTACATGAGGAGCTGTGTCGTGAGTTTTTACCCATGTCTGCTAAGCATAACA</gDNA_template>
            <first_frame> *  N  S  K  *  F  G  S  D  I  A  R  L  H  S  C  D  A  H  L  E  S  P  T  L  L  R  Y  H  P  *  S  P  C  I  L  Q  H  Y  R  P  *  Q  T  N  L  H  Y  L  R  Q  C  R  L  S  L  R  P  D  G  S  L  S  R  R  S  H  Y  F  R  R  R  R  S  R  F  Q  A  A  S  R  L  W  P  P  M  V  *  M  R  V  D  P  Q  Y  *  Y  K  L  I  *  G  Q  S  L  *  D  P  P  *  L  G  L  R  P  C  L  H  C  G  G  C  E  L  H  I  Y  C  E  S  *  P  *  *  *  R  R  E  A  H  S  L  R  L  L  *  *  V  T  Q  E  I  R  E  N  H  S  I  G  G  S  T  R  V  L  Q  P  I  Q  V  Q  P  A  I  Y  L  R  V  S  V  L  R  F  L  L  V  W  K  F  E  C  I  *  D  E  G  V  D  G  L  S  R  L  V  F  R  A  Q  L  P  F  R  V  S  R  R  R  R  G  V  I  R  G  K  G  R  A  G  A  V  G  T  G  W  *  G  H  A  S  G  Y  K  G  P  I  R  V  R  W  L  L  L  Q  P  V  F  G  G  E  *  L  P  P  S  L  Q  T  L  C  L  L  D  L  L  L  *  C  *  R  V  H  I  S  S  *  C  Q  H  Y  S  R  I  C  V  K  R  L  L  Q  Q  Y  S  V  H  H  *  A  K  C  H  V  Q  H  P  L  F  E  Q  F  L  S  K  L  F  Q  :  A  V  G  L  *  E  V  V  V  Q  R  L  E  K  *  H  *  E  R  S  Q  V  C  H  T  G  K  K  C  V  C  N  R  C  A  H  V  G  K  C  S  R  R  D  F  A  P  D  R  N  *  D  P  L  L  S  L  S  Q  L  H  H  G  T  *  G  A  V  S  *  V  F  T  H  V  C  *  A  *   </first_frame>
            <second_frame>  K  T  P  S  N  L  V  V  T  L  L  A  F  T  L  V  M  L  I  W  N  L  Q  P  Y  Y  D  T  I  L  N  P  P  A  S  S  N  I  T  D  P  N  K  R  T  F  I  T  Y  G  N  A  A  S  L  F  V  Q  M  G  A  Y  R  G  G  P  T  T  F  A  V  V  G  L  A  S  K  P  L  H  V  F  G  R  P  W  Y  K  C  E  W  I  P  N  T  N  T  N  S  S  K  A  K  A  Y  K  I  L  P  D  W  G  Y  G  R  V  Y  T  V  V  V  V  N  C  T  F  T  V  N  P  N  L  D  N  N  G  G  K  L  I  L  Y  A  Y  Y  S  E  S  P  K  R  Y  E  K  I  T  A  L  E  E  A  P  G  S  Y  N  Q  S  K  F  S  P  P  Y  T  Y  E  Y  L  Y  C  G  S  S  L  Y  G  N  L  S  A  S  R  M  R  E  W  M  A  Y  H  A  W  F  F  G  P  S  S  H  F  V  F  H  D  A  G  G  V  S  S  E  V  R  A  V  L  E  P  W  V  Q  A  G  R  V  T  L  Q  D  I  R  D  Q  S  E  F  D  G  Y  Y  Y  N  Q  F  L  V  V  N  D  C  L  H  R  Y  R  H  S  A  Y  W  T  F  Y  F  D  V  D  E  Y  I  Y  L  P  D  A  N  T  T  L  E  S  V  L  R  D  F  S  N  N  T  Q  F  T  I  E  Q  N  A  M  S  S  I  L  C  L  N  N  S  S  Q  N  Y  S  R :   L  W  G  F  E  K  L  L  F  R  D  S  R  S  N  I  R  R  D  R  K  Y  A  I  Q  A  K  N  A  Y  A  T  G  V  H  M  S  E  N  V  V  G  G  T  L  H  Q  T  E  T  K  I  R  Y  Y  H  Y  H  N  S  I  T  V  H  E  E  L  C  R  E  F  L  P  M  S  A  K  H  N  </second_frame>
            <third_frame>   K  L  Q  V  I  W  *  *  H  C  S  P  S  L  L  *  C  S  F  G  I  S  N  L  T  T  I  P  S  L  I  P  L  H  P  P  T  L  P  T  L  T  N  E  P  S  L  P  T  A  M  P  P  L  S  S  S  R  W  E  P  I  A  A  V  P  L  L  S  P  S  S  V  S  L  P  S  R  F  T  S  L  A  A  H  G  I  N  A  S  G  S  P  I  L  I  Q  T  H  L  R  P  K  P  I  R  S  S  L  T  G  V  T  A  V  S  T  L  W  W  L  *  T  A  H  L  L  *  I  L  T  L  I  I  T  E  G  S  S  F  S  T  L  T  I  V  S  H  P  R  D  T  R  K  S  Q  H  W  R  K  H  Q  G  L  T  T  N  P  S  S  A  R  H  I  P  T  S  I  C  I  A  V  P  P  C  M  E  I  *  V  H  L  G  *  G  S  G  W  P  I  T  P  G  F  S  G  P  A  P  I  S  C  F  T  T  P  A  G  C  H  P  R  *  G  P  C  W  S  R  G  Y  R  L  V  G  S  R  F  R  I  *  G  T  N  P  S  S  M  A  T  I  T  T  S  F  W  W  *  M  I  A  S  I  A  T  D  T  L  P  I  G  P  S  T  L  M  L  T  S  T  Y  I  F  L  M  P  T  L  L  S  N  L  C  *  E  T  S  P  T  I  L  S  S  P  L  S  K  M  P  C  P  A  S  S  V  *  T  I  P  L  K  T  I  P   : G  C  G  A  L  R  S  C  C  S  E  T  R  E  V  T  L  G  E  I  A  S  M  P  Y  R  Q  K  M  R  M  Q  Q  V  C  T  C  R  K  M  *  *  E  G  L  C  T  R  Q  K  L  R  S  A  T  I  I  I  T  T  P  S  R  Y  M  R  S  C  V  V  S  F  Y  P  C  L  L  S  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94490" stop="95463"/>
                    <exon start="95916" stop="96153"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTPSNLVVTLLAFTLVMLIWNLQPYYDTILNPPASSNITDPNKRTFITYGNAASLFVQMGAYRGGPTTFAVVGLASKPLHVFGRPWYKCEWIPNTNTNSSKAKAYKILPDWGYGRVYTVVVVNCTFTVNPNLDNNGGKLILYAYYSESPKRYEKITALEEAPGSYNQSKFSPPYTYEYLYCGSSLYGNLSASRMREWMAYHAWFFGPSSHFVFHDAGGVSSEVRAVLEPWVQAGRVTLQDIRDQSEFDGYYYNQFLVVNDCLHRYRHSAYWTFYFDVDEYIYLPDANTTLESVLRDFSNNTQFTIEQNAMSSILCLNNSSQNYSRLWGFEKLLFRDSRSNIRRDRKYAIQAKNAYATGVHMSENVVGGTLHQTETKIRYYHYHNSITVHEELCREFLPMSAKHN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="96217" PGL_stop="96571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96217" e_stop="96571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96217" e_stop="96571" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96217" stop="96571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96217" stop="96567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAGGATTTTGAGCGAAATACTATCAATATTAATGCAGCTCCCGACCATACCAATAACTCATAGGACCAGTTATTTCACCCTTACATAGTACAGCAGTATTGTACCATAATTTTAGTTACCACAGTGAAGAGAAAGGAACTGGTGAACAAGTGTTTCAGTAGTAGTGTTCATCCCTACTCCTAATTCTTGCAACTCCTGTAGGGTCACCACACTTTATTTCTGCTGGCTGGATTTGGTTATTAATATCAAATCATTCATTTGTATCCACATATTGCAAAGTTAGGTTGATTTGGGAAAAGAGAGAGATGAGGATTTGTCTGTAAATGGTAATCGTTAACATTTTCTTTTGCGA</gDNA_template>
            <first_frame> I  K  D  F  E  R  N  T  I  N  I  N  A  A  P  D  H  T  N  N  S  *  D  Q  L  F  H  P  Y  I  V  Q  Q  Y  C  T  I  I  L  V  T  T  V  K  R  K  E  L  V  N  K  C  F  S  S  S  V  H  P  Y  S  *  F  L  Q  L  L  *  G  H  H  T  L  F  L  L  A  G  F  G  Y  *  Y  Q  I  I  H  L  Y  P  H  I  A  K  L  G  *  F  G  K  R  E  R  *  G  F  V  C  K  W  *  S  L  T  F  S  F  A  </first_frame>
            <second_frame>  S  R  I  L  S  E  I  L  S  I  L  M  Q  L  P  T  I  P  I  T  H  R  T  S  Y  F  T  L  T  *  Y  S  S  I  V  P  *  F  *  L  P  Q  *  R  E  R  N  W  *  T  S  V  S  V  V  V  F  I  P  T  P  N  S  C  N  S  C  R  V  T  T  L  Y  F  C  W  L  D  L  V  I  N  I  K  S  F  I  C  I  H  I  L  Q  S  *  V  D  L  G  K  E  R  D  E  D  L  S  V  N  G  N  R  *  H  F  L  L  R </second_frame>
            <third_frame>   Q  G  F  *  A  K  Y  Y  Q  Y  *  C  S  S  R  P  Y  Q  *  L  I  G  P  V  I  S  P  L  H  S  T  A  V  L  Y  H  N  F  S  Y  H  S  E  E  K  G  T  G  E  Q  V  F  Q  *  *  C  S  S  L  L  L  I  L  A  T  P  V  G  S  P  H  F  I  S  A  G  W  I  W  L  L  I  S  N  H  S  F  V  S  T  Y  C  K  V  R  L  I  W  E  K  R  E  M  R  I  C  L  *  M  V  I  V  N  I  F  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="104434" PGL_stop="105227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104434" e_stop="105227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="104434" e_stop="105227" e_length="794"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104434" stop="105095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104434" stop="105089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104434" stop="105068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104435" stop="105171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104435" stop="105000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104480" stop="105077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104532" stop="105174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104552" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104601" stop="105227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104749" stop="105175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397654" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCTCCTCGAATATCGTCGATCAAAAGCAGCTGACCAGCTACGTCATCTCAATTGGTGGAGAGCTCCGTCAATATAGCGTTCCCATCAACGTCTCTCAAGTTCTTCAATCTGACATCTCTTCCACCTTCCTATGCAGTTCCGACCGTCTTTACTTTGACCATTTCATACCTTCACTTGATTCCCAATACCAGCTTCTTCCCAATCAGATCTATTTCATGCTTCCGGCCTCCAAGCTTAAATATCCACTCACTGCCTCTGACATGGCAGCTCTTGCCCTAAAGGCAAGCACTGCTCTGGAAGAACTCAACAAAAACAAAAGCCGAAAGTCTAGGAAGATCACGAGTAAGAACCGAATTTCACCCATGCTTCTTCCACTAGAACAAGAAACCAATAATTATTACAAGTCCACTACCGTAGGACTTGGGATTTCCATGAGATCTGCATCGGTCAGAAAATTGCAGCGATTATCTTCACGCCGGGCAAAGATGGCTGTGCGATCCTTCCGTAAGCTTATCACCATTCAAGAAGGGTTCGTTCTTTTTTAGTTAATGATATATTCTTTTTGGTTGCCGGTAAACATGCGATGCGAGTTAGTGCTCTTCTCTCGCTCTACACGTGTATGTGTATATATATATATATATAGTAAATACAAAACAAATATATATTTTACATATATACGATTAAATTTCCTTGTATGTAAATGGTACTTAATTAATTAGCTTGTACAACAACAACAACCATGTATTACTTATTAGTACAGTTTAACCAAAAAAATCTACACTTGACGATAC</gDNA_template>
            <first_frame> L  P  P  R  I  S  S  I  K  S  S  *  P  A  T  S  S  Q  L  V  E  S  S  V  N  I  A  F  P  S  T  S  L  K  F  F  N  L  T  S  L  P  P  S  Y  A  V  P  T  V  F  T  L  T  I  S  Y  L  H  L  I  P  N  T  S  F  F  P  I  R  S  I  S  C  F  R  P  P  S  L  N  I  H  S  L  P  L  T  W  Q  L  L  P  *  R  Q  A  L  L  W  K  N  S  T  K  T  K  A  E  S  L  G  R  S  R  V  R  T  E  F  H  P  C  F  F  H  *  N  K  K  P  I  I  I  T  S  P  L  P  *  D  L  G  F  P  *  D  L  H  R  S  E  N  C  S  D  Y  L  H  A  G  Q  R  W  L  C  D  P  S  V  S  L  S  P  F  K  K  G  S  F  F  F  S  *  *  Y  I  L  F  G  C  R  *  T  C  D  A  S  *  C  S  S  L  A  L  H  V  Y  V  Y  I  Y  I  Y  I  V  N  T  K  Q  I  Y  I  L  H  I  Y  D  *  I  S  L  Y  V  N  G  T  *  L  I  S  L  Y  N  N  N  N  H  V  L  L  I  S  T  V  *  P  K  K  S  T  L  D  D   </first_frame>
            <second_frame>  F  L  L  E  Y  R  R  S  K  A  A  D  Q  L  R  H  L  N  W  W  R  A  P  S  I  *  R  S  H  Q  R  L  S  S  S  S  I  *  H  L  F  H  L  P  M  Q  F  R  P  S  L  L  *  P  F  H  T  F  T  *  F  P  I  P  A  S  S  Q  S  D  L  F  H  A  S  G  L  Q  A  *  I  S  T  H  C  L  *  H  G  S  S  C  P  K  G  K  H  C  S  G  R  T  Q  Q  K  Q  K  P  K  V  *  E  D  H  E  *  E  P  N  F  T  H  A  S  S  T  R  T  R  N  Q  *  L  L  Q  V  H  Y  R  R  T  W  D  F  H  E  I  C  I  G  Q  K  I  A  A  I  I  F  T  P  G  K  D  G  C  A  I  L  P  *  A  Y  H  H  S  R  R  V  R  S  F  L  V  N  D  I  F  F  L  V  A  G  K  H  A  M  R  V  S  A  L  L  S  L  Y  T  C  M  C  I  Y  I  Y  I  *  *  I  Q  N  K  Y  I  F  Y  I  Y  T  I  K  F  P  C  M  *  M  V  L  N  *  L  A  C  T  T  T  T  T  M  Y  Y  L  L  V  Q  F  N  Q  K  N  L  H  L  T  I  </second_frame>
            <third_frame>   S  S  S  N  I  V  D  Q  K  Q  L  T  S  Y  V  I  S  I  G  G  E  L  R  Q  Y  S  V  P  I  N  V  S  Q  V  L  Q  S  D  I  S  S  T  F  L  C  S  S  D  R  L  Y  F  D  H  F  I  P  S  L  D  S  Q  Y  Q  L  L  P  N  Q  I  Y  F  M  L  P  A  S  K  L  K  Y  P  L  T  A  S  D  M  A  A  L  A  L  K  A  S  T  A  L  E  E  L  N  K  N  K  S  R  K  S  R  K  I  T  S  K  N  R  I  S  P  M  L  L  P  L  E  Q  E  T  N  N  Y  Y  K  S  T  T  V  G  L  G  I  S  M  R  S  A  S  V  R  K  L  Q  R  L  S  S  R  R  A  K  M  A  V  R  S  F  R  K  L  I  T  I  Q  E  G  F  V  L  F  *  L  M  I  Y  S  F  W  L  P  V  N  M  R  C  E  L  V  L  F  S  R  S  T  R  V  C  V  Y  I  Y  I  Y  S  K  Y  K  T  N  I  Y  F  T  Y  I  R  L  N  F  L  V  C  K  W  Y  L  I  N  *  L  V  Q  Q  Q  Q  P  C  I  T  Y  *  Y  S  L  T  K  K  I  Y  T  *  R  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104436" stop="104981"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSNIVDQKQLTSYVISIGGELRQYSVPINVSQVLQSDISSTFLCSSDRLYFDHFIPSLDSQYQLLPNQIYFMLPASKLKYPLTASDMAALALKASTALEELNKNKSRKSRKITSKNRISPMLLPLEQETNNYYKSTTVGLGISMRSASVRKLQRLSSRRAKMAVRSFRKLITIQEGFVLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="107154" PGL_stop="111074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107154" e_stop="107381"/>
            <exon e_start="107448" e_stop="107504"/>
            <exon e_start="107690" e_stop="107926"/>
            <exon e_start="108092" e_stop="108447"/>
            <exon e_start="108801" e_stop="108840"/>
            <exon e_start="110891" e_stop="111074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.425" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107154" e_stop="107381" e_length="228"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107382" i_stop="107447" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107448" e_stop="107504" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.658">
            <gDNA_intron_boundary i_start="107505" i_stop="107689" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107690" e_stop="107926" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.825">
            <gDNA_intron_boundary i_start="107927" i_stop="108091" i_length="165"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="108092" e_stop="108447" e_length="356"/>
          </exon>
          <intron i_serial="4" don_prob="0.425" acc_prob="0.999">
            <gDNA_intron_boundary i_start="108448" i_stop="108800" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="108801" e_stop="108840" e_length="40"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108841" i_stop="110890" i_length="2050"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="110891" e_stop="111074" e_length="184"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107154" stop="107381"/>
              <exon start="107448" stop="107504"/>
              <exon start="107690" stop="107926"/>
              <exon start="108092" stop="108203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107154" stop="107381"/>
              <exon start="107448" stop="107504"/>
              <exon start="107690" stop="107922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107154" stop="107381"/>
              <exon start="107448" stop="107504"/>
              <exon start="107690" stop="107917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107154" stop="107381"/>
              <exon start="107448" stop="107504"/>
              <exon start="107690" stop="107914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107796" stop="107926"/>
              <exon start="108092" stop="108447"/>
              <exon start="108801" stop="108840"/>
              <exon start="110891" stop="111074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTGTTGGCATTTAATGCATTTGGTTTACCTATCCCTACTCCATCTTCTTTGTCAATCTCGAAGTCGAAGATTATTACATATAATTGTGTCGGCTGGAATTGGATTGCCCCTGCAGCTCCTCAGTATTGATATACCTTCACTCCATCTGATTAACCATTTTTAATTAATAATAAAAACTACTCTTCTTTCAGAGCTCTCATGTCCTCAATATGTCTCCCACACCACTA : GAACCAGTACATTATAACCATCATTCTCCCAACTCCAATCATACTCCCAAATTCCAG : CGCAACTTGCAGTCTTCCATGGAATTGATGAAAGAAATTACTACTCTCGAAATTGAGATAATGCGTTTGGAACGATATCTTCTCTCACTATATCGGACAGCTCTCCCGCTTGTATTGGAAAATAATCAGAAAATCAAGATAAGCTCCCCTACCCAGTGTACAACACACCAATCATACTCCGATGTTGAAATGGATACGTGTGCGGATCTAATCTCCGCTGCACATGCTTTGGCTGGT : GAAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAG : GACACTGGTTAAGAGCCTTGAAAAGGTTGATCCAAGAAAC : AAGTAATCCAAGGAGATTATTCATTTAACTGTCAATATTAGTGTTGTACTTATATAATAAAAATATTTCTCTCATTTAATTGCGAAGTCATGTAAGCATCATTATATATACTGTGTGCGGGTGGTTCAGATCTTTCCACTAACTACATTTCTCTCTTTAAGTGTTGTTTTCAGAAAATATATCA</gDNA_template>
            <first_frame> C  V  G  I  *  C  I  W  F  T  Y  P  Y  S  I  F  F  V  N  L  E  V  E  D  Y  Y  I  *  L  C  R  L  E  L  D  C  P  C  S  S  S  V  L  I  Y  L  H  S  I  *  L  T  I  F  N  *  *  *  K  L  L  F  F  Q  S  S  H  V  L  N  M  S  P  T  P  L  :  E  P  V  H  Y  N  H  H  S  P  N  S  N  H  T  P  K  F  Q  :  R  N  L  Q  S  S  M  E  L  M  K  E  I  T  T  L  E  I  E  I  M  R  L  E  R  Y  L  L  S  L  Y  R  T  A  L  P  L  V  L  E  N  N  Q  K  I  K  I  S  S  P  T  Q  C  T  T  H  Q  S  Y  S  D  V  E  M  D  T  C  A  D  L  I  S  A  A  H  A  L  A  G  :  E  K  L  T  D  S  A  H  R  S  L  A  D  H  L  T  A  S  R  M  D  D  L  L  S  Y  P  D  R  L  S  E  E  I  V  K  C  I  S  C  I  Y  C  K  F  A  N  P  N  I  L  A  P  K  G  L  S  V  S  S  T  S  S  L  S  S  S  S  T  F  S  P  R  N  L  S  G  S  W  S  S  H  H  N  E  E  S  T  E  Q  Y  E  F  E  V  I  E  I  L  K  I  C  L  D  D  D  S  F  N  Y  A  T  T  M  L  H  K  F  R :   T  L  V  K  S  L  E  K  V  D  P  R  N  :  K  *  S  K  E  I  I  H  L  T  V  N  I  S  V  V  L  I  *  *  K  Y  F  S  H  L  I  A  K  S  C  K  H  H  Y  I  Y  C  V  R  V  V  Q  I  F  P  L  T  T  F  L  S  L  S  V  V  F  R  K  Y  I  </first_frame>
            <second_frame>  V  L  A  F  N  A  F  G  L  P  I  P  T  P  S  S  L  S  I  S  K  S  K  I  I  T  Y  N  C  V  G  W  N  W  I  A  P  A  A  P  Q  Y  *  Y  T  F  T  P  S  D  *  P  F  L  I  N  N  K  N  Y  S  S  F  R  A  L  M  S  S  I  C  L  P  H  H  * :   N  Q  Y  I  I  T  I  I  L  P  T  P  I  I  L  P  N  S  S :   A  T  C  S  L  P  W  N  *  *  K  K  L  L  L  S  K  L  R  *  C  V  W  N  D  I  F  S  H  Y  I  G  Q  L  S  R  L  Y  W  K  I  I  R  K  S  R  *  A  P  L  P  S  V  Q  H  T  N  H  T  P  M  L  K  W  I  R  V  R  I  *  S  P  L  H  M  L  W  L  V :   K  N  *  R  I  L  P  T  V  A  L  R  I  T  S  L  P  L  A  W  M  T  F  L  V  I  L  I  G  C  L  K  K  *  S  N  A  Y  L  V  Y  T  A  N  L  P  I  P  I  F  L  L  Q  R  D  Y  Q  F  L  L  L  R  H  C  H  H  Q  A  H  F  L  R  E  I  F  R  A  A  G  A  H  I  T  M  R  R  A  L  S  S  M  N  L  K  *  *  K  F  *  R  Y  V  *  M  M  I  V  S  I  M  P  Q  Q  C  C  I  S  S   : G  H  W  L  R  A  L  K  R  L  I  Q  E  T :   S  N  P  R  R  L  F  I  *  L  S  I  L  V  L  Y  L  Y  N  K  N  I  S  L  I  *  L  R  S  H  V  S  I  I  I  Y  T  V  C  G  W  F  R  S  F  H  *  L  H  F  S  L  *  V  L  F  S  E  N  I  S </second_frame>
            <third_frame>   C  W  H  L  M  H  L  V  Y  L  S  L  L  H  L  L  C  Q  S  R  S  R  R  L  L  H  I  I  V  S  A  G  I  G  L  P  L  Q  L  L  S  I  D  I  P  S  L  H  L  I  N  H  F  *  L  I  I  K  T  T  L  L  S  E  L  S  C  P  Q  Y  V  S  H  T  T   : R  T  S  T  L  *  P  S  F  S  Q  L  Q  S  Y  S  Q  I  P   : A  Q  L  A  V  F  H  G  I  D  E  R  N  Y  Y  S  R  N  *  D  N  A  F  G  T  I  S  S  L  T  I  S  D  S  S  P  A  C  I  G  K  *  S  E  N  Q  D  K  L  P  Y  P  V  Y  N  T  P  I  I  L  R  C  *  N  G  Y  V  C  G  S  N  L  R  C  T  C  F  G  W   : *  K  I  N  G  F  C  P  P  *  P  C  G  S  P  H  C  L  S  H  G  *  P  S  *  L  S  *  *  A  V  *  R  N  S  Q  M  H  I  L  Y  I  L  Q  I  C  Q  S  Q  Y  S  C  S  K  G  I  I  S  F  F  Y  F  V  I  V  I  I  K  H  I  F  S  E  K  S  F  G  Q  L  E  L  T  S  Q  *  G  E  H  *  A  V  *  I  *  S  D  R  N  F  E  D  M  S  R  *  *  *  F  Q  L  C  H  N  N  A  A  *  V  Q  :  D  T  G  *  E  P  *  K  G  *  S  K  K   : Q  V  I  Q  G  D  Y  S  F  N  C  Q  Y  *  C  C  T  Y  I  I  K  I  F  L  S  F  N  C  E  V  M  *  A  S  L  Y  I  L  C  A  G  G  S  D  L  S  T  N  Y  I  S  L  F  K  C  C  F  Q  K  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107328" stop="107381"/>
                    <exon start="107448" stop="107504"/>
                    <exon start="107690" stop="107926"/>
                    <exon start="108092" stop="108447"/>
                    <exon start="108801" stop="108840"/>
                    <exon start="110891" stop="110896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLFFQSSHVLNMSPTPLEPVHYNHHSPNSNHTPKFQRNLQSSMELMKEITTLEIEIMRLERYLLSLYRTALPLVLENNQKIKISSPTQCTTHQSYSDVEMDTCADLISAAHALAGEKLTDSAHRSLADHLTASRMDDLLSYPDRLSEEIVKCISCIYCKFANPNILAPKGLSVSSTSSLSSSSTFSPRNLSGSWSSHHNEESTEQYEFEVIEILKICLDDDSFNYATTMLHKFRTLVKSLEKVDPRNK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="120667" PGL_stop="120043"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120667" e_stop="120043"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="120667" e_stop="120043" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120667" stop="120049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120665" stop="120043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120664" stop="120180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTGGATTGACTAAGAATGTCATAAAACCTTATGGATGCTCAGTCTGGAAAGCTATTAGGAATCTTTGGCCAAAGATGCAGATCAGAAATAAGGTGAGGATAGGAAATGGGCAGAAAACCTCTTTTTTTGGCATGACAAGTGGGGCAGGGCTTTTAACAATGAAACAACAACATCCGGAGCTATACACTCTAAGCCAGCAACAAGAAGCCACAGTTGCCATGATGTGGACTGGACAAGGATGGCATCGATATCTAAGGAGATATCTGAATGATTGGGAGATTGGTAGGATAACAGAATTCTATAACTCAGTAGCAAGTTTCAACAATCTGACTGACGAAGTGGACAGACTAGAATGGAACAGAAAAAGTAAGGGAATTTTTTCTGTCAAATCTGCATACAGGTAGCTAAATGTAGAAGTGGTGAAGGAAAGAGATTGGCCTTGGAAGATGATATGGAAACCAAAAATTCCCTACAATGTTAACTGTTTCATCTGGCTCTGGCCAAAGAAGCAGTGTTAACTCATGATAACCTGAAAAAAAGGGTCACCAACTAACCGCTGGCTGTTTTTTGTGGGGAACAAGCTGAGACAATCAACCATCTTTTTTTGCACTGCAAATGGAC</gDNA_template>
            <first_frame> I  I  G  L  T  K  N  V  I  K  P  Y  G  C  S  V  W  K  A  I  R  N  L  W  P  K  M  Q  I  R  N  K  V  R  I  G  N  G  Q  K  T  S  F  F  G  M  T  S  G  A  G  L  L  T  M  K  Q  Q  H  P  E  L  Y  T  L  S  Q  Q  Q  E  A  T  V  A  M  M  W  T  G  Q  G  W  H  R  Y  L  R  R  Y  L  N  D  W  E  I  G  R  I  T  E  F  Y  N  S  V  A  S  F  N  N  L  T  D  E  V  D  R  L  E  W  N  R  K  S  K  G  I  F  S  V  K  S  A  Y  R  *  L  N  V  E  V  V  K  E  R  D  W  P  W  K  M  I  W  K  P  K  I  P  Y  N  V  N  C  F  I  W  L  W  P  K  K  Q  C  *  L  M  I  T  *  K  K  G  S  P  T  N  R  W  L  F  F  V  G  N  K  L  R  Q  S  T  I  F  F  C  T  A  N  G  </first_frame>
            <second_frame>  *  L  D  *  L  R  M  S  *  N  L  M  D  A  Q  S  G  K  L  L  G  I  F  G  Q  R  C  R  S  E  I  R  *  G  *  E  M  G  R  K  P  L  F  L  A  *  Q  V  G  Q  G  F  *  Q  *  N  N  N  I  R  S  Y  T  L  *  A  S  N  K  K  P  Q  L  P  *  C  G  L  D  K  D  G  I  D  I  *  G  D  I  *  M  I  G  R  L  V  G  *  Q  N  S  I  T  Q  *  Q  V  S  T  I  *  L  T  K  W  T  D  *  N  G  T  E  K  V  R  E  F  F  L  S  N  L  H  T  G  S  *  M  *  K  W  *  R  K  E  I  G  L  G  R  *  Y  G  N  Q  K  F  P  T  M  L  T  V  S  S  G  S  G  Q  R  S  S  V  N  S  *  *  P  E  K  K  G  H  Q  L  T  A  G  C  F  L  W  G  T  S  *  D  N  Q  P  S  F  F  A  L  Q  M  D </second_frame>
            <third_frame>   N  W  I  D  *  E  C  H  K  T  L  W  M  L  S  L  E  S  Y  *  E  S  L  A  K  D  A  D  Q  K  *  G  E  D  R  K  W  A  E  N  L  F  F  W  H  D  K  W  G  R  A  F  N  N  E  T  T  T  S  G  A  I  H  S  K  P  A  T  R  S  H  S  C  H  D  V  D  W  T  R  M  A  S  I  S  K  E  I  S  E  *  L  G  D  W  *  D  N  R  I  L  *  L  S  S  K  F  Q  Q  S  D  *  R  S  G  Q  T  R  M  E  Q  K  K  *  G  N  F  F  C  Q  I  C  I  Q  V  A  K  C  R  S  G  E  G  K  R  L  A  L  E  D  D  M  E  T  K  N  S  L  Q  C  *  L  F  H  L  A  L  A  K  E  A  V  L  T  H  D  N  L  K  K  R  V  T  N  *  P  L  A  V  F  C  G  E  Q  A  E  T  I  N  H  L  F  L  H  C  K  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120667" stop="120260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIGLTKNVIKPYGCSVWKAIRNLWPKMQIRNKVRIGNGQKTSFFGMTSGAGLLTMKQQHPELYTLSQQQEATVAMMWTGQGWHRYLRRYLNDWEIGRITEFYNSVASFNNLTDEVDRLEWNRKSKGIFSVKSAYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="123327" PGL_stop="127432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123327" e_stop="123378"/>
            <exon e_start="123739" e_stop="124112"/>
            <exon e_start="124196" e_stop="124290"/>
            <exon e_start="125957" e_stop="126199"/>
            <exon e_start="126393" e_stop="127036"/>
            <exon e_start="127304" e_stop="127432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.266" e_score="0.995"/>
          <exon-intron don_prob="0.873" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.842" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123327" e_stop="123378" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.040">
            <gDNA_intron_boundary i_start="123379" i_stop="123738" i_length="360"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="123739" e_stop="124112" e_length="374"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.266">
            <gDNA_intron_boundary i_start="124113" i_stop="124195" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124196" e_stop="124290" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.873" acc_prob="0.958">
            <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="125957" e_stop="126199" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="126393" e_stop="127036" e_length="644"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.842">
            <gDNA_intron_boundary i_start="127037" i_stop="127303" i_length="267"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="127304" e_stop="127432" e_length="129"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123327" stop="123378"/>
              <exon start="123739" stop="124112"/>
              <exon start="124196" stop="124287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123804" stop="124112"/>
              <exon start="124196" stop="124290"/>
              <exon start="125957" stop="126199"/>
              <exon start="126393" stop="126401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124255" stop="124290"/>
              <exon start="125957" stop="126199"/>
              <exon start="126393" stop="126876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542304" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126131" stop="126199"/>
              <exon start="126393" stop="127036"/>
              <exon start="127304" stop="127432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126423" stop="126968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAG : GTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTATATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATTTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTA : GTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGATAAG : GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA : GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGATGCAGAAGAGTCTATTGCGCAAGCTTGCTTGTTGGCGGGTGGCGAGAGTTGCCTTTTTCTTAGCCATG : GTGTTATTTGCATGGAGATTGCCAGGCAGCAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGGCAC</gDNA_template>
            <first_frame> A  G  N  A  D  D  A  I  E  E  C  K  Y  L  E  S  K   : G  L  L  D  V  E  S  L  Q  L  Y  A  L  S  Y  W  K  L  G  K  Y  D  L  A  L  S  M  A  K  R  L  A  S  S  A  L  P  T  E  H  P  L  A  A  A  S  V  S  F  I  C  R  L  V  Y  H  I  S  G  K  E  L  A  I  R  N  I  L  Q  L  P  K  R  A  F  Q  S  S  R  V  R  L  V  A  F  A  I  H  A  L  D  E  S  H  Q  L  D  S  V  V  S  C  V  R  E  S  L  S  S  N  K  E  I  A  A  L  D  F  L  A  T  L  G  L  L  :  V  K  H  G  S  K  D  C  L  E  V  Q  K  G  V  N  Y  L  R  R  A  L  H  T  S  P  N  S  H  L  I  R :   T  L  L  G  Y  L  L  V  S  S  R  E  W  K  D  V  H  I  S  A  R  C  F  R  V  D  P  S  E  H  Q  K  K  E  G  V  K  S  S  V  Q  I  F  G  A  G  A  V  A  C  C  N  V  G  S  G  K  K  T  L  A  M  S  I  C  R  E  N  S  T  L  E  C  K  T  I  K  L  L  Q  K :   C  V  H  Q  E  P  W  D  H  H  S  Y  Y  L  L  V  L  N  Y  L  Q  K  A  R  E  K  K  F  P  R  N  L  C  V  V  L  E  R  L  I  N  V  A  L  R  S  E  L  Y  A  K  D  D  I  S  S  Q  Y  Q  K  F  Q  L  L  L  C  A  A  E  V  S  L  H  G  G  N  N  F  K  C  I  M  H  A  K  S  T  L  E  M  Q  L  P  D  N  Y  L  F  F  A  H  L  L  L  C  R  A  Y  A  V  E  D  N  Y  S  G  L  H  E  E  Y  I  R  C  L  Q  L  K  T  D  N  H  I  G  W  I  C  L  K  F  L  E  S  R  Y  K  L  Q  S  D  S  S  S  L  A  L  A  F  Q  E  C  G  K  E  I  K  T  S  W  N  M  W  I  A  M  Y  N  L  V  Q  G  L  T  A  A  W  N  G  E  F  I  D  A  E  E  S  I  A  Q  A  C  L  L  A  G  G  E  S  C  L  F  L  S  H   : G  V  I  C  M  E  I  A  R  Q  Q  S  D  S  D  F  L  S  L  A  I  R  S  L  K  K  A  K  D  S  S  S  T  P  L  P  F  V  S  L  L  L  A  </first_frame>
            <second_frame>  Q  E  M  L  M  M  L  L  K  N  V  S  I  W  K  A  K  :  V  F  W  M  *  K  V  C  S  F  M  R  F  L  I  G  N  L  E  N  M  T  L  L  F  L  W  Q  R  D  W  P  H  L  L  Y  Q  R  S  I  H  W  L  L  P  P  S  V  S  S  V  D  *  Y  I  I  F  Q  G  R  N  *  L  *  E  T  Y  Y  N  C  Q  K  E  P  S  R  V  Q  E  L  G  L  *  H  L  L  F  M  H  *  M  K  V  I  S  L  T  Q  L  F  H  V  F  V  S  L  F  H  L  T  K  R  L  L  R  W  I  S  W  P  H  W  A  Y  * :   S  N  M  D  L  R  T  A  *  K  F  R  R  G  S  I  I  *  E  E  L  F  I  L  L  Q  T  V  I  *  *   : G  P  F  L  A  I  C  *  Y  P  A  G  N  G  K  M  F  T  F  Q  L  D  A  S  E  W  I  L  L  N  I  R  K  R  K  V  L  N  P  V  F  R  F  L  V  L  E  Q  L  L  A  V  M  W  G  A  A  R  R  H  *  Q  C  P  S  V  E  K  I  Q  H  W  S  A  K  R  S  S  C  C  R   : S  V  S  I  R  S  L  G  T  I  I  H  I  T  S  L  Y  *  I  I  F  R  R  R  G  R  R  N  F  L  V  T  C  V  L  F  L  R  G  *  *  M  W  L  F  E  V  S  F  M  Q  K  M  I  F  L  P  S  T  K  S  S  S  F  C  F  V  P  R  R  L  V  C  M  V  G  I  I  S  S  A  L  C  M  Q  K  V  L  *  R  C  S  F  Q  I  T  T  S  S  L  H  T  C  Y  Y  V  V  P  M  L  *  K  I  I  I  Q  D  F  M  K  N  T  *  G  A  C  S  *  K  L  I  I  I  L  V  G  F  V  L  S  F  L  K  V  D  T  S  C  S  Q  I  P  V  H  *  P  W  P  F  K  S  V  A  K  K  *  K  L  R  G  T  C  G  L  L  C  I  I  W  F  K  V  *  L  Q  L  G  M  G  N  L  L  M  Q  K  S  L  L  R  K  L  A  C  W  R  V  A  R  V  A  F  F  L  A  M  :  V  L  F  A  W  R  L  P  G  S  S  P  I  Q  I  F  Y  H  L  L  L  E  V  *  R  K  Q  K  T  V  L  Q  R  H  Y  P  L  S  H  C  Y  W  H </second_frame>
            <third_frame>   R  K  C  *  *  C  Y  *  R  M  *  V  F  G  K  Q  R :   S  S  G  C  R  K  F  A  A  L  C  A  F  L  L  E  T  W  K  I  *  P  C  S  F  Y  G  K  E  T  G  L  I  C  F  T  N  G  A  S  I  G  C  C  L  R  Q  F  H  L  *  I  S  I  S  Y  F  R  E  G  I  S  Y  K  K  H  I  T  T  A  K  K  S  L  P  E  F  K  S  *  A  C  S  I  C  Y  S  C  I  R  *  K  S  S  A  *  L  S  C  F  M  C  S  *  V  S  F  I  *  Q  R  D  C  C  A  G  F  P  G  H  T  G  L  T   : S  Q  T  W  I  *  G  L  P  R  S  S  E  G  G  Q  L  S  K  K  S  S  S  Y  F  S  K  Q  S  F  D  K  :  D  P  S  W  L  S  V  S  I  Q  Q  G  M  E  R  C  S  H  F  S  S  M  L  Q  S  G  S  F  *  T  S  E  K  G  R  C  *  I  Q  C  S  D  F  W  C  W  S  S  C  L  L  *  C  G  E  R  Q  E  D  T  S  N  V  H  L  *  R  K  F  N  T  G  V  Q  N  D  Q  A  A  A  E  :  V  C  P  S  G  A  L  G  P  S  F  I  L  P  P  C  T  K  L  S  S  E  G  A  G  E  E  I  S  S  *  P  V  C  C  S  *  E  V  D  K  C  G  S  S  K  *  A  L  C  K  R  *  Y  F  F  P  V  P  K  V  P  A  S  A  L  C  R  G  G  *  F  A  W  W  E  *  F  Q  V  H  Y  A  C  K  K  Y  S  R  D  A  A  S  R  *  L  P  L  L  C  T  L  A  T  M  S  C  L  C  C  R  R  *  L  F  R  T  S  *  R  I  H  K  V  L  A  A  K  N  *  *  S  Y  W  L  D  L  S  *  V  S  *  K  S  I  Q  A  A  V  R  F  Q  F  T  S  L  G  L  S  R  V  W  Q  R  N  K  N  F  V  E  H  V  D  C  Y  V  *  F  G  S  R  S  N  C  S  L  E  W  G  I  Y  *  C  R  R  V  Y  C  A  S  L  L  V  G  G  W  R  E  L  P  F  S  *  P  W :   C  Y  L  H  G  D  C  Q  A  A  V  R  F  R  F  F  I  T  C  Y  *  K  S  E  E  S  K  R  Q  F  F  N  A  T  T  L  C  L  T  A  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123327" stop="123378"/>
                    <exon start="123739" stop="124112"/>
                    <exon start="124196" stop="124290"/>
                    <exon start="125957" stop="126199"/>
                    <exon start="126393" stop="127036"/>
                    <exon start="127304" stop="127431"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1536</number_coding_nucleotides>
                  <number_encoded_amino_acids>512</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGNADDAIEECKYLESKGLLDVESLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKELAIRNILQLPKRAFQSSRVRLVAFAIHALDESHQLDSVVSCVRESLSSNKEIAALDFLATLGLLVKHGSKDCLEVQKGVNYLRRALHTSPNSHLIRTLLGYLLVSSREWKDVHISARCFRVDPSEHQKKEGVKSSVQIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKLLQKCVHQEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDDISSQYQKFQLLLCAAEVSLHGGNNFKCIMHAKSTLEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIRCLQLKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLTAAWNGEFIDAEESIAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKDSSSTPLPFVSLLLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123327" e_stop="123378"/>
            <exon e_start="123739" e_stop="124112"/>
            <exon e_start="124196" e_stop="124290"/>
            <exon e_start="125957" e_stop="126199"/>
            <exon e_start="126393" e_stop="126579"/>
            <exon e_start="127333" e_stop="127429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.040" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.266" e_score="0.995"/>
          <exon-intron don_prob="0.873" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="0.972"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="123327" e_stop="123378" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.040">
            <gDNA_intron_boundary i_start="123379" i_stop="123738" i_length="360"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="123739" e_stop="124112" e_length="374"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.266">
            <gDNA_intron_boundary i_start="124113" i_stop="124195" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124196" e_stop="124290" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.873" acc_prob="0.958">
            <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="125957" e_stop="126199" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="126393" e_stop="126579" e_length="187"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126580" i_stop="127332" i_length="753"/>
          </intron>
          <exon e_serial="6" e_score="0.979">
            <gDNA_exon_boundary e_start="127333" e_stop="127429" e_length="97"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123327" stop="123378"/>
              <exon start="123739" stop="124112"/>
              <exon start="124196" stop="124287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123804" stop="124112"/>
              <exon start="124196" stop="124290"/>
              <exon start="125957" stop="126199"/>
              <exon start="126393" stop="126401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125987" stop="126199"/>
              <exon start="126393" stop="126579"/>
              <exon start="127333" stop="127429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGGAAATGCTGATGATGCTATTGAAGAATGTAAGTATTTGGAAAGCAAAG : GTCTTCTGGATGTAGAAAGTTTGCAGCTTTATGCGCTTTCTTATTGGAAACTTGGAAAATATGACCTTGCTCTTTCTATGGCAAAGAGACTGGCCTCATCTGCTTTACCAACGGAGCATCCATTGGCTGCTGCCTCCGTCAGTTTCATCTGTAGATTAGTATATCATATTTCAGGGAAGGAATTAGCTATAAGAAACATATTACAACTGCCAAAAAGAGCCTTCCAGAGTTCAAGAGTTAGGCTTGTAGCATTTGCTATTCATGCATTAGATGAAAGTCATCAGCTTGACTCAGTTGTTTCATGTGTTCGTGAGTCTCTTTCATCTAACAAAGAGATTGCTGCGCTGGATTTCCTGGCCACACTGGGCTTACTA : GTCAAACATGGATCTAAGGACTGCCTAGAAGTTCAGAAGGGGGTCAATTATCTAAGAAGAGCTCTTCATACTTCTCCAAACAGTCATTTGATAAG : GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA : GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAG : CAGTCCGATTCAGATTTTTTATCACTTGCTATTAGAAGTCTGAAGAAAGCAAAAGACAGTTCTTCAACGCCACTACCCTTTGTCTCACTGCTACTGG</gDNA_template>
            <first_frame> A  G  N  A  D  D  A  I  E  E  C  K  Y  L  E  S  K   : G  L  L  D  V  E  S  L  Q  L  Y  A  L  S  Y  W  K  L  G  K  Y  D  L  A  L  S  M  A  K  R  L  A  S  S  A  L  P  T  E  H  P  L  A  A  A  S  V  S  F  I  C  R  L  V  Y  H  I  S  G  K  E  L  A  I  R  N  I  L  Q  L  P  K  R  A  F  Q  S  S  R  V  R  L  V  A  F  A  I  H  A  L  D  E  S  H  Q  L  D  S  V  V  S  C  V  R  E  S  L  S  S  N  K  E  I  A  A  L  D  F  L  A  T  L  G  L  L  :  V  K  H  G  S  K  D  C  L  E  V  Q  K  G  V  N  Y  L  R  R  A  L  H  T  S  P  N  S  H  L  I  R :   T  L  L  G  Y  L  L  V  S  S  R  E  W  K  D  V  H  I  S  A  R  C  F  R  V  D  P  S  E  H  Q  K  K  E  G  V  K  S  S  V  Q  I  F  G  A  G  A  V  A  C  C  N  V  G  S  G  K  K  T  L  A  M  S  I  C  R  E  N  S  T  L  E  C  K  T  I  K  L  L  Q  K :   C  V  H  Q  E  P  W  D  H  H  S  Y  Y  L  L  V  L  N  Y  L  Q  K  A  R  E  K  K  F  P  R  N  L  C  V  V  L  E  R  L  I  N  V  A  L  R  S  E  L  Y  A  K  D  D  I  S  S  Q  Y  Q  K  F  Q  :  Q  S  D  S  D  F  L  S  L  A  I  R  S  L  K  K  A  K  D  S  S  S  T  P  L  P  F  V  S  L  L  L  </first_frame>
            <second_frame>  Q  E  M  L  M  M  L  L  K  N  V  S  I  W  K  A  K  :  V  F  W  M  *  K  V  C  S  F  M  R  F  L  I  G  N  L  E  N  M  T  L  L  F  L  W  Q  R  D  W  P  H  L  L  Y  Q  R  S  I  H  W  L  L  P  P  S  V  S  S  V  D  *  Y  I  I  F  Q  G  R  N  *  L  *  E  T  Y  Y  N  C  Q  K  E  P  S  R  V  Q  E  L  G  L  *  H  L  L  F  M  H  *  M  K  V  I  S  L  T  Q  L  F  H  V  F  V  S  L  F  H  L  T  K  R  L  L  R  W  I  S  W  P  H  W  A  Y  * :   S  N  M  D  L  R  T  A  *  K  F  R  R  G  S  I  I  *  E  E  L  F  I  L  L  Q  T  V  I  *  *   : G  P  F  L  A  I  C  *  Y  P  A  G  N  G  K  M  F  T  F  Q  L  D  A  S  E  W  I  L  L  N  I  R  K  R  K  V  L  N  P  V  F  R  F  L  V  L  E  Q  L  L  A  V  M  W  G  A  A  R  R  H  *  Q  C  P  S  V  E  K  I  Q  H  W  S  A  K  R  S  S  C  C  R   : S  V  S  I  R  S  L  G  T  I  I  H  I  T  S  L  Y  *  I  I  F  R  R  R  G  R  R  N  F  L  V  T  C  V  L  F  L  R  G  *  *  M  W  L  F  E  V  S  F  M  Q  K  M  I  F  L  P  S  T  K  S  S  S :   S  P  I  Q  I  F  Y  H  L  L  L  E  V  *  R  K  Q  K  T  V  L  Q  R  H  Y  P  L  S  H  C  Y  W </second_frame>
            <third_frame>   R  K  C  *  *  C  Y  *  R  M  *  V  F  G  K  Q  R :   S  S  G  C  R  K  F  A  A  L  C  A  F  L  L  E  T  W  K  I  *  P  C  S  F  Y  G  K  E  T  G  L  I  C  F  T  N  G  A  S  I  G  C  C  L  R  Q  F  H  L  *  I  S  I  S  Y  F  R  E  G  I  S  Y  K  K  H  I  T  T  A  K  K  S  L  P  E  F  K  S  *  A  C  S  I  C  Y  S  C  I  R  *  K  S  S  A  *  L  S  C  F  M  C  S  *  V  S  F  I  *  Q  R  D  C  C  A  G  F  P  G  H  T  G  L  T   : S  Q  T  W  I  *  G  L  P  R  S  S  E  G  G  Q  L  S  K  K  S  S  S  Y  F  S  K  Q  S  F  D  K  :  D  P  S  W  L  S  V  S  I  Q  Q  G  M  E  R  C  S  H  F  S  S  M  L  Q  S  G  S  F  *  T  S  E  K  G  R  C  *  I  Q  C  S  D  F  W  C  W  S  S  C  L  L  *  C  G  E  R  Q  E  D  T  S  N  V  H  L  *  R  K  F  N  T  G  V  Q  N  D  Q  A  A  A  E  :  V  C  P  S  G  A  L  G  P  S  F  I  L  P  P  C  T  K  L  S  S  E  G  A  G  E  E  I  S  S  *  P  V  C  C  S  *  E  V  D  K  C  G  S  S  K  *  A  L  C  K  R  *  Y  F  F  P  V  P  K  V  P   : A  V  R  F  R  F  F  I  T  C  Y  *  K  S  E  E  S  K  R  Q  F  F  N  A  T  T  L  C  L  T  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123327" stop="123378"/>
                    <exon start="123739" stop="124112"/>
                    <exon start="124196" stop="124290"/>
                    <exon start="125957" stop="126199"/>
                    <exon start="126393" stop="126579"/>
                    <exon start="127333" stop="127428"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1047</number_coding_nucleotides>
                  <number_encoded_amino_acids>349</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGNADDAIEECKYLESKGLLDVESLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKELAIRNILQLPKRAFQSSRVRLVAFAIHALDESHQLDSVVSCVRESLSSNKEIAALDFLATLGLLVKHGSKDCLEVQKGVNYLRRALHTSPNSHLIRTLLGYLLVSSREWKDVHISARCFRVDPSEHQKKEGVKSSVQIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKLLQKCVHQEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDDISSQYQKFQQSDSDFLSLAIRSLKKAKDSSSTPLPFVSLLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 392 chains have been computed
$ 
$ memory statistics:
$ 509456 bytes spliced alignments in total
$ 238 spliced alignments have been stored
$ 2140 bytes was the average size of a spliced alignment
$ 39408 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1876 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 428 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 03:05:44
-->
