<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 17:37:35"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239903" ref_strand="+" ref_description="SGN-E239903 [cLED-29-E13]">
      <seq>ttttcttgatggaatgaaattggtgtttgaatcacaaagaggagagtggggaaaagcagaaagagtgattggttgtggttacaatccaagccaaaagaaggtatttttcacagtggattcattgttagtacatgaaattttttgcaaaacagaagaatttggaaatccactttacccaattttagcatcaaatggtgatattttagtactagtaaatcttggacaaagtgtattcaaatatcaaccagcaaatctacataggacaccaaatccttgcttcattggtccaataatgcaaaatgattcatcaattcttggatatgaagacagcaaagaacttttctcaatgggtagaattgatgcacaatggcttaatagaagttatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="1695" stop="2680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2003" g_stop="2380" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="389" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E239903" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2003" e_stop="2380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGAAATTGGTGTTTGAATCACAAAGAGGAGAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTATTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAA</genome_strand>
        <mrna_strand>GAATGAAATTGGTGTTTGAATCACAAAGAGGAGAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTATTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTTATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367887" ref_strand="+" ref_description="SGN-E367887 [TUS-22-E17](-)">
      <seq>gagtggggaacagcagaaagagggattggttgtggttacaatccaagccaaaagaaggtattttttcacagtggattcattgttagtacatgaaattttttgcaaaacagaagaatttggaaatccactttacccaattttagcatcaaatggtgatattttagtactagtaaatcttggacaaagtgtattcaaatatcaaccagcaaatctacataggacaccaaatccttgcttcattggtccaataatgcaaaatgattcatcaattcttggatatgaagacagcaaagaacttttctcaatgggtagaattgatgcacaatggcttaatagaagtaatacaagaagtaataacaatactgttaatagtttaaaacaagtattagattatgatttggagtctgaaggtgatttatttgaaattgttttagataattgtaatagttattcaagatctcctaaccctttgtaacatattataaaaagaataattcaaatgtaacattataattttgtacatgtttgtttttttttggggttgtatgagaccatgaaggggcactaaattagaagatattggttttattttatttgttaatttgttagttgttgtaactgttaagtcactaaattaaaggggatgttgattaaaaatgtattgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="1735" stop="3000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2035" g_stop="2712" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E367887" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2035" e_stop="2712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTA-TTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAAGAAGTAATAACAATACTGTTAATAGTTTAAAACAAGTATTAGATTATGATTTGGAGTCTGAAGGTGATTTATTTGAAATTGTTTTAGATAATTGTAATAGTTATTCAAGATCTCCTAACCCTTTGTAACATATTATAAAAAGAATAATTCAAATGTAACATTATAATTTTGTACATGTTTTTTTTTTTTTGGGGTTGTATGAGACCATGAAGGGGCACTAAATTAGAAGATATTGGTTTTATTTTATTTGTTAATTTGTTAGTTGTTGTAACTGTTAAGTCACTAAATTAAAGATGATGTTGATTATAATTGTATTGTAATTTGATTAATGA</genome_strand>
        <mrna_strand>GAGTGGGGAACAGCAGAAAGAGGGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTATTTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAAGAAGTAATAACAATACTGTTAATAGTTTAAAACAAGTATTAGATTATGATTTGGAGTCTGAAGGTGATTTATTTGAAATTGTTTTAGATAATTGTAATAGTTATTCAAGATCTCCTAACCCTTTGTAACATATTATAAAAAGAATAATTCAAATGTAACATTATAATTTTGTACATGTTTGTTTTTTTTTGGGGTTGTATGAGACCATGAAGGGGCACTAAATTAGAAGATATTGGTTTTATTTTATTTGTTAATTTGTTAGTTGTTGTAACTGTTAAGTCACTAAATTAAAGGGGATGTTGATTAAAAATGTATTGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367577" ref_strand="+" ref_description="SGN-E367577 [cLPT-7-F22]">
      <seq>gaagaaggaatgagtatgagagacataaattgctagctttaaatcaacgacaaaagatggttcttcaaagaaagacggaggaggctgctatggcaactaagagactaaaagaattgctagaagcgcgtaaatcttcaggtcgcgagaactcagttactagcaatggccatgtagcaaatggacagagcaatgagaaatcgttgcaacgttggcttgatcatgagcttgaagtgatggtgaatgttcatgaagttcgtcatgagtatgagaagcaaagtcaagtacgagccgcacttggtgaagagctagcagttttgaaacaagttgatgaatttgcttcaaaaagactgagtcctccaaggggtaaaaatggtttctctagggcatcttcaatgtcgccaaatgctagaatggcacgaattgcttctctagagaatatgttaggcatttcatccaattccctagttgcaatggcttcacaactttcagaagcagaagaacgagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="29279" stop="31394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29579" g_stop="29637" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29638" i_stop="30138" i_length="501">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30139" g_stop="30232" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="153" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30233" i_stop="30401" i_length="169">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30402" g_stop="30433" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="185" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30434" i_stop="30523" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30524" g_stop="30621" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="283" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30622" i_stop="30723" i_length="102">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30724" g_stop="30822" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="382" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30823" i_stop="30969" i_length="147">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30970" g_stop="31094" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="507" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E367577" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29579" e_stop="29637"/>
          <exon e_start="30139" e_stop="30232"/>
          <exon e_start="30402" e_stop="30433"/>
          <exon e_start="30524" e_stop="30621"/>
          <exon e_start="30724" e_stop="30822"/>
          <exon e_start="30970" e_stop="31094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGGAATGAGTATGAGAGACATAAATTGCTAGCTTTAAATCAACGACAAAAGATGGTGAGCATTTTAAGTTCCTCTATGTCCTTGTGTTGTCTTTCATTCTTCTCCAACTGTTTTAGTGAAGAAACACTTGACGTACATTCTAGTTGTGACATCCAAAAAATCAATGTCTTTAAATGCTACAATTCTACTTCATGAAATGGATATGTGTAATTGAGCATTTGATTTGATCCTTGAAGAAAAATTCAGCCACTTGAACATCTATTTGTAGCAGAGTAGAAAAAATCCCGTTTCTTGAAATTTTTTACACTTTGATCACAAGTTCAGAACAGATCTTGTATTTCTTGAAGACCTAGCTCAAACAAAATGCAGCGTGTATTAGAGAGGAAACAGTACACCTCCTGCCCAATTGAAGCTATTGTACCTTTGACAGCTTTTGTTAAATGGCTAACATAAATTGATGGCTTACTAGAATAACATGCACAATAGTCAAGCTCGTGCTAGTAGGTGATCACAGTCAATATCTGAATGTTATATGGCATCATGGATTTATTTCAGGTTCTTCAAAGAAAGACGGAGGAGGCTGCTATGGCAACCAAGAGACTAAAAGAATTGCTAGAAGCGCGTAAATCTTCTGGTCGCGAGAACTCAGGTTTGCACTATATTTAGCTTTTATCTGATGCCTTTTTTGTGGATTACTATTTACTGGTGAATTCTATTTCTATTAAAAATATATTCTCTCATAGAAGGTTCCACTGATTTATGCTAGTCTTTGCATTTTAATTTGTTCAACTTACTAAAATGTTCTGTTTATCATGCAGTTACTAGCAACGGCCATGTAGCAAATGGACAGGTACCAATCTTGCTCCTTTTGGACTCTAATGGACTTTTGTCTTTATACCTATTTGATCAAATAATTTAGTCAAGTATCTTTTGTATTCAGAGCAATGAGAAATCGTTGCAACGTTGGCTTGATCATGAGCTTGAAGTGATGGTGAATGTTCATGAAGTTCGTCATGAGTATGAGAAGCAAAGTCAAGTGTATGTAACAAAACTTATTTTACCTAAATTAATCTTCTCTTAATGTGTGCACACTTAACATATTCTGGGTTGCTTTTTTGAAATGGTTTCTTTTCATCTCAGACGAGCCGCACTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAGGTACATATACTGAATGCATCTCTATTCTATCTGCCAATAATGGATTCAGTATCTCCAAAATGCAGCCTTAAGTAGCACTAAAGAAAACATTTTAAGTGCTAAAGAAAGTTCACTCTAATGGATTTCTATTTGTGGTTATCTGTTCAGGGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTAGGCATTTCATCCAATTCTCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGC</genome_strand>
        <mrna_strand>GAAGAAGGAATGAGTATGAGAGACATAAATTGCTAGCTTTAAATCAACGACAAAAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCAAAGAAAGACGGAGGAGGCTGCTATGGCAACTAAGAGACTAAAAGAATTGCTAGAAGCGCGTAAATCTTCAGGTCGCGAGAACTCAG.........................................................................................................................................................................TTACTAGCAATGGCCATGTAGCAAATGGACAG..........................................................................................AGCAATGAGAAATCGTTGCAACGTTGGCTTGATCATGAGCTTGAAGTGATGGTGAATGTTCATGAAGTTCGTCATGAGTATGAGAAGCAAAGTCAAGT......................................................................................................ACGAGCCGCACTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAAGACTGAGTCCTCCAAGGGGTAAAAATGGTTTCTCTAG...................................................................................................................................................GGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTAGGCATTTCATCCAATTCCCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327208" ref_strand="+" ref_description="SGN-E327208 [cTOC-19-E3]">
      <seq>cttggtgaagagctagcagctttgaaacaagttgatgaatttgcttcaaaaggactgagtcctccaaggggtaaaaatggcttctctagggcatcttcaatgtcgccaaatgctagaatggcacgaattgcttctctagagaatatgttacgcatttcatccaattctctaattgcaatggcttcacaactttcagaagcagaagaacgagagcgtgcttttagcaatcgtgggcgttggaaccaactacgctcgatgggggatgcaaaaagtttgctccaatatatgttcaattctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="30434" stop="31482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30734" g_stop="30822" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30823" i_stop="30969" i_length="147">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30970" g_stop="31182" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="302" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E327208" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30734" e_stop="30822"/>
          <exon e_start="30970" e_stop="31182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAGGTACATATACTGAATGCATCTCTATTCTATCTGCCAATAATGGATTCAGTATCTCCAAAATGCAGCCTTAAGTAGCACTAAAGAAAACATTTTAAGTGCTAAAGAAAGTTCACTCTAATGGATTTCTATTTGTGGTTATCTGTTCAGGGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTAGGCATTTCATCCAATTCTCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGCGAGCTTTTAGCAATCGTGGGCGTTGGAACCAACTACGCTCGATGGGGGATGCAAAAAGTTTGCTCCAATATATGTTCAATTCTCTTGC</genome_strand>
        <mrna_strand>CTTGGTGAAGAGCTAGCAGCTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAG...................................................................................................................................................GGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTACGCATTTCATCCAATTCTCTAATTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGCGTGCTTTTAGCAATCGTGGGCGTTGGAACCAACTACGCTCGATGGGGGATGCAAAAAGTTTGCTCCAATATATGTTCAATTCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549002" ref_strand="+" ref_description="SGN-E549002 [TUS-66-G10](-)">
      <seq>gttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagctttgtttgcctacaatgtggtggtctggttagcacccatcgcaaagatgaacactactcattctggtgttgcaaaaattgagttagctttcaacttgaatgtattttagccagtgggtttctctagtatttgctcttggctccagatcaatgctctaactaggcatgttgctgtaagcattacatggtagctggagtaatgattgcacaggtcgcactgaaagttgtatggctatagatattgacaacaaaaatgtattcagtttcttggagtatgttgtgcactctgtactattcaagatgttttgaaataattgaagcatacatccttatagtgagcttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37610" stop="33342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37310" g_stop="37222" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33643" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="718" r_length="629" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33642" i_stop="33461" i_length="182">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.680" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33460" g_stop="33452" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="727" r_length="9" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E549002" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37310" e_stop="37222"/>
          <exon e_start="34271" e_stop="33643"/>
          <exon e_start="33460" e_stop="33452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACATGGTAGCTGGAGTAATGATTGCACAGGTCGCACTGAAAGTTGTATGGCTATAGATATTGACAACAAAAATGTATTCAGTTTCTTGGAGTATGTTGTGCACTCTGTACTATTCAAGATGTTTTGAAATAATTGAAGCATATATCCTTATAGTGAGCTTGTAATCATGGTTTTCCTCTTGAGATTAGCTTCATAATTTACTGTTTGCACCAATTGATTATGAAGACTACCATTCTAGTGGCATAAAGGGTGACTTCCAAAACATATAGTCAGCAAAAGAAGAGCAATGCCAAAATAATAGATCTGTTGAAAAGACATTAAGTTCGTTTTGGTAGCTTGGGCCAGGTAAACAAA</genome_strand>
        <mrna_strand>GTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACATGGTAGCTGGAGTAATGATTGCACAGGTCGCACTGAAAGTTGTATGGCTATAGATATTGACAACAAAAATGTATTCAGTTTCTTGGAGTATGTTGTGCACTCTGTACTATTCAAGATGTTTTGAAATAATTGAAGCATACATCCTTATAGTGAGCTTGTA......................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699248" ref_strand="+" ref_description="SGN-E699248 [FA09BA12]">
      <seq>cgctaatattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctttctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagctttgtttgcctacaatgtggcggtctggttagcacccatcgcaaagatgaacactactcattctggtgttgcaaaaattgagttagctttcaacttgaatgtattttagccagtgggtttctctagtatttgctcttggctccagatctatgctctaactangcatggtgctgtaagcattgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37889" stop="33502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37590" g_stop="37222" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33802" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="833" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E699248" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37590" e_stop="37222"/>
          <exon e_start="34271" e_stop="33802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACAT</genome_strand>
        <mrna_strand>CGCTAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTTTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTA----C-C-GCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGCGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCTATGCTCTAACTANGCATGGTGCTGTAAGCATTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544193" ref_strand="+" ref_description="SGN-E544193 [TUS-66-G10]">
      <seq>gaaggggcaaatattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagctttgtttgccctacatgtggtggtctggttagcacccatcgcaaagatgaacactactcattctggtgttgcaaaaattgagttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37895" stop="33601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37595" g_stop="37222" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33901" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="744" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E544193" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37595" e_stop="37222"/>
          <exon e_start="34271" e_stop="33901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAG</genome_strand>
        <mrna_strand>GAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCCTACATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345302" ref_strand="+" ref_description="SGN-E345302 [cTOF-13-H6]">
      <seq>atatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagctttgtttgcctacaatgtgggtggntctggttagcacccatcgcaaagatgaacactactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37864" stop="33628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37564" g_stop="37222" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33928" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="688" r_length="346" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E345302" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37564" e_stop="37222"/>
          <exon e_start="34271" e_stop="33928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGT-GGTGG-TCTGGTTAGCACCCATCGCAAAGATGAACACTACTC</genome_strand>
        <mrna_strand>ATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGGTGGNTCTGGTTAGCACCCATCGCAAAGATGAACACTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359382" ref_strand="+" ref_description="SGN-E359382 [cLHT-31-C21]">
      <seq>agtagaacaagagtaagaaataggaaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccaccgtcaccgtcactactgcattcaagttcagaacaggatggcgccattagagggattctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagctttgtttgcctacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37788" stop="33669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37488" g_stop="37222" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33969" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="558" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E359382" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.022" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37488" e_stop="37222"/>
          <exon e_start="34271" e_stop="33969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGT</genome_strand>
        <mrna_strand>AGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTA----C-C-GCCACCGTCACCGTCA-C-T-AC---TGCATTCAAGTTCAGAACAGGATGGCGCCATTAGAGGGATTCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325147" ref_strand="+" ref_description="SGN-E325147 [cTOC-13-J7]">
      <seq>gaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattctctgacggaagcagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37605" stop="33684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37305" g_stop="37222" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="33984" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="372" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E325147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37305" e_stop="37222"/>
          <exon e_start="34271" e_stop="33984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTT</genome_strand>
        <mrna_strand>GACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250806" ref_strand="+" ref_description="SGN-E250806 [cLEG-13-G7]">
      <seq>aaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcaggaaacagataatgtttgatgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37803" stop="33702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37503" g_stop="37222" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34002" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="551" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E250806" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37503" e_stop="37222"/>
          <exon e_start="34271" e_stop="34002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTC</genome_strand>
        <mrna_strand>AAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347213" ref_strand="+" ref_description="SGN-E347213 [cTOF-25-D5]">
      <seq>atattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccattcctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatactatctgaaactggcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37885" stop="33727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37585" g_stop="37222" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34027" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="608" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E347213" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37585" e_stop="37222"/>
          <exon e_start="34271" e_stop="34027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAG</genome_strand>
        <mrna_strand>ATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATTCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205220" ref_strand="+" ref_description="SGN-E205220 [cLEC-16-J24]">
      <seq>aagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaacttcaatacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37774" stop="33741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37474" g_stop="37222" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34041" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="483" r_length="231" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E205220" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37474" e_stop="37222"/>
          <exon e_start="34271" e_stop="34041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTA</genome_strand>
        <mrna_strand>AAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209240" ref_strand="+" ref_description="SGN-E209240 [cLEC-53-K23]">
      <seq>gccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggataaaccaattgaagtagacgctgatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37846" stop="33751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37546" g_stop="37222" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34051" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="545" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E209240" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37546" e_stop="37222"/>
          <exon e_start="34271" e_stop="34051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAAC</genome_strand>
        <mrna_strand>GCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723616" ref_strand="+" ref_description="SGN-E723616 [FC21AC04]">
      <seq>cccttgagtagaacaagagtaagaaataggaaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacttgatggaggcggagtccacggtgtcagtggatccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactatatcccaaccttctgaacataatacagtggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37794" stop="33779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37494" g_stop="37222" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34079" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="466" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E723616" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37494" e_stop="37222"/>
          <exon e_start="34271" e_stop="34079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATA</genome_strand>
        <mrna_strand>CCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACTTGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271253" ref_strand="+" ref_description="SGN-E271253 [cLEM-5-O8]">
      <seq>aaatattccagaaactgctagaaatatctggtggtctcttcgccatttgtgtattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaggagctgtacagaaataaagtacaggcaagtgtggctgcagatgagctggcttctttgtttgctgagtgtgccattgctgaggccatccctactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37887" stop="33810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37587" g_stop="37222" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34110" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="527" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E271253" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37587" e_stop="37222"/>
          <exon e_start="34271" e_stop="34110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATA</genome_strand>
        <mrna_strand>AAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTGTGTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391973" ref_strand="+" ref_description="SGN-E391973 [TUS-27-P10]">
      <seq>caaatattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccaagagctgtacaaaaataaagtacaggcaaatgtgactgcaaataagctggcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37888" stop="33852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37588" g_stop="37222" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34152" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="486" r_length="120" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E391973" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37588" e_stop="37222"/>
          <exon e_start="34271" e_stop="34152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCT</genome_strand>
        <mrna_strand>CAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAAGAGCTGTACAAAAATAAAGTACAGGCAAATGTGACTGCAAATAAGCTGGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723951" ref_strand="+" ref_description="SGN-E723951 [FC22CC09]">
      <seq>catttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtaaatgctgacatgatggaggcggagtccacggtgtcagtggatccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcaaaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaggccgtaattcaagcccttaatcgtgcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37844" stop="33906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37544" g_stop="37222" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34206" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="389" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E723951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37544" e_stop="37222"/>
          <exon e_start="34271" e_stop="34206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAG</genome_strand>
        <mrna_strand>CATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAAATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAAACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306909" ref_strand="+" ref_description="SGN-E306909 [cLEY-11-K15]">
      <seq>aaggggcttatattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggagccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatcaaggcaggccttctcaagctcttcaagcggtggtgacggccatgagaaccagaggtggtgagcaagccgtaattcaagcccttaatcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37894" stop="33910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37594" g_stop="37222" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34271" g_stop="34210" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="434" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E306909" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37594" e_stop="37222"/>
          <exon e_start="34271" e_stop="34210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCGGTAATCTCATTTCTCCCTACCTACAGCGTCGTTCTCCTGTAAAAAATTGTTTATTTTGAGTTCGTAGTTTAACTGAACATGATTGCTATCTTTTATTTGAATGCTAGAGTTTTTGTGGTTGTTGGATTAAGTCTATGCCTACAAGCATCTATGTTCCCTCCTATCGACCTCTTTCATTTGCTCTGCGATAACCGCAAGGAACTGATTATAATGGAGATTCTGGCATATCAGATATGTGAATATCACTAGTATCAAGGGCCTTTTTGCTTGGAAATCTCTACTAGATTTAGTTTCAATTTTTTTATTACAATTGTTATTCTGTTATTTAACAACAAATTCGTCATATGGGAGCTGATAGGTCCTAGTCATTATAGTCACTAATCTAAATAACATCAGATACTTAAATAATCCAAACCAGACAGATAATAAGTACACAGTGATAAATTGGATTTTAAAGGACTATTCATTTTGAAGGTATTGTTTCAAAGTCATCCTCCATCTGACCAGATTTTTAAGAATTGAAGTCATCTTCAGTGTCTTGGTTAAAGTGTAATGCTTTCTTTGTTGTTATATATAGGACCACTTTTTTCTTAATTGTACTTTCTTTATGTTGAACAAGGTGTTGGTAAGAGACTTGTATCTCTCTATTTGTATAGGAATCTATCTGACAATTCATATCCTTTTTTTTTTTTTGGTTTGGATCGAGAATTATACTTTGTTATTATGTATGTCTAGTGTGCATAATTACATAAGCTTTGTGATTGCATGTATGTTTGTTATATCCTAATTCTTGGCTACACATTCTGATGTTCATAGACCACATAGGCAATGACATTATGAAGTTGTGTAAATGTCGCAAGAGTATTTTCGTAATAAGCATGAAAGAGATCCCACCTACCTGTTGCAGGATCTAACACACACTATCCTGTAATGATTGTCAGTGAAGATTCGCTAAGAGCATCTCTTTCGATGGATACAAATAGATTGCTAGATGTGTTAGTCACTTCATGGATAAGTTTTTATGAGTTTAGATGATTAAATAGGCATTGGCGTGAATGTGGTCAATGTATTCCAATACAGGTAGTGCGATGGTAAGACACTCTGTCACTGATACTTGACATCGCCTGTCAATTCCACTCCTTATGGCAATGAAGGATGAATACATGTTTAGTGGAGGAAAGATATGTAGATTACATGTTACGTTATCATTAAACATTGTACCGCATTGTAACTTTGTAAGTTTGTTATTGGGATGTCCTGAACAGTGTCAATATAACTGAAGTACCAAATCTGTCACTCCATACTTTTTTTTGACATGGTAATAGATTGTGTATACAAATCAGCAGCGCTAAGGCTGGTATCCAAAAAAGTTTCAGCAGTGAAACTACATCCAAAAAAGTGAAATTAAAGACTCCCTATATCCTATGTCATCTTATAAGGGTCCTAGAATTCCCAAATAGAAACTGGGTCATCTATATATTCTGAACTGTATCAATAACAAAAAGTTAGAATGCAATTCATTTTAATCTTTTGTATTAATCTACTGTTGCCTTCAACCAGGAGTCTCTCTCCTTCCAAATGGTCCACCATATTACCGTCCGGACAATTCTCCATCTGTCTTTGTTTGTGCTGCCACAACCCTGTATTCCAGCTTATTAGAGCTTGTTTGTTCTTTCATGCATAGTCCACCTTATGCCTCTGTAGCTGGCTACTTTACATTGAAGAAACAGATGGTAAATTGTCTCGGCATTTTAGAACAGATTCTTTCACAACCAGCCAAGTGAAAATAACCACTTTATAAGGAATTTGAACTTCTAGGTAAGCTTCCAAGGTAAAAAGCTGATCTGAGATCCCATTTGATTCATATCCTTATAGGCCTGCCTCTACATACTCTTTTCTGGGATATATAAGAAAGTCTTCTAGACTCTCTTTTTCAGTGACTTAAAGTTTAAGAAACAATAAGTTTTTTGTAGTGGTGTTATTGTAAAATATGATTCAGTAGTGCACCACCTTGTGTTTTGAGGCCTACTTGGTATGTAACTATGTTTCATCTGAAATTTCTGATGAGTTGTATCTTGTATGGATTTTCTACATTTTCTGTTTTCCTGATAAGTAACATGTATTTTTCCCATCGTTTTTATGGATCAGTTGAGCAGCATGAATTATGTAAAATTACATCTCTTGCTATTTTATCGGTAGAAACTGTCATTAGATGAGTGATAAGAAAATGAATCCTTTCCTTTTATAAACAATTAGTTACACATGGAAAGTGCATTCAAATATGTCAAAAGTTATCATCTTATGTCAGTTTTAGCTGATTATAGCTGTTATCATCCGGGGATCAGCTCTAGTCTTTTAGCTTCTTCTTTAAACAATTTAGCATTGTGTTAACTATATATAAGCAGTTTTTTTTATGACACTATATATAATCAGTTATGATTGAAAAAGCATGAAAATATGTAGCAATCATCTTATGTACGTATATGCCTGATTATACCTATAGCCATCCTGGAAACAGATCTGGTCCTTTTAGCTTCCCCTTTCAACAACCTAGTATTGTGTTAAGTTTTAACTATGAATCATTAGTTACTTGCGTAAAATGCATACAAATATGTAAAAGCAATCATCTTATGCCTACAGGAATCAGATCTAGTTTGGTTTCTCTTTTCAACAATTTAGCATTGTATTATAACTTATAACTGCATGTTGATTAAGCAAGGAAGCACCAATCAGGCCAAGGAGAACAAGAAATTCTGGTGAAAATAGCTAAATACTCAAAAACCAAGCAGACCTTTTAAAATTCATTTCTTAGAAAATTTTCCAAGAATTTGGTACTTTGTGTCTAGTTCAAGGGCCATCTATTCTTTTAGCGATGCCTCGGTATCATGAAAACTTTGCATATTCTGCCTGTGTTCATGTAAATCTTGGTACTAATAAAATATGGCAACAGGTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGC</genome_strand>
        <mrna_strand>AAGGGGCTTATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGG-AAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGAGCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAAGCCGTAATTCAAGCCCTTAATCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298833" ref_strand="+" ref_description="SGN-E298833 [cLET-44-F19]">
      <seq>aaaaaattgaatgttgagggtgggaaggggcaaatattccagaaactgctagaaatatctggtggtctcttcgccatttctctattatcttcatctctctgtaaaaactccaatcaaatactaacccttgagtagaacaagagtaagaaataggaaaactccggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggatccaccggtaccgccactgccaccgtcaccgtcaccgtgactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37918" stop="36950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37618" g_stop="37250" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E298833" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37618" e_stop="37250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGAATGTTGAGGGTGGGAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCA</genome_strand>
        <mrna_strand>AAAAAATTGAATGTTGAGGGTGGGAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTGACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E287756" ref_strand="+" ref_description="SGN-E287756 [cLES-19-C3]">
      <seq>cggcgacgaaagtaacagatcgcaactgtaacggaaatgccatggacgatgtagatgctgacatgatggaggcggagtccacggtgtcagtggatccaccggtaccgccactgccaccgtcaccgtcaccgtcactattgcattcaagttcagaccaggatggcgccattagagggatgctcactgtggctcgtcagcttatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="37757" stop="36952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37457" g_stop="37252" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E287756" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37457" e_stop="37252"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGAT</genome_strand>
        <mrna_strand>CGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710490" ref_strand="+" ref_description="SGN-E710490 [FA55CD06]">
      <seq>cagatttcagtattgaggattgaagaagataacaatgaactggaagagaaggtgaaaagagtacaacaaggaatgcagcaagtgatgggtaaaagtgggagcttagtattctgtgcaggtgaggtgcaggtgtataccctggaacagctgatgagagcttctgctgagcttttaggtagaggaactatggggactacttacaaagcagtgcttgataaccgtctgattgtttgtgtgaaaagattagacggtgggagattggccggtacaagtcaagaagagtttgagcagcatatggaatcagtaggcgggcttaggcacccgaatttggttccttttcgggcttattttcaggcccgacaagaaaggcttttggtctatgattatcaacccaatggcagcctgttttctcttattcatggttccaagtcatcaagagcaaagccacttcactggacttcatgtttgaaaatagcagaggatgtagctcaaggactttcctacatccaccaagcatggaggcttgtccatggcaatctcaagtcctctaacgtcctcctcggctccgatttcgaggcgtgcataaccgactactgtctctccgtcctagctgtcccctcggacgatgagaatcctgattctgtagcctatcaggctccagaaattcgtaagctgaatcacaacaaccaccaccaccaccgccaagctagtgccaaggctgatgtctattcgtttggggttcttttgcttgaacttctaacggggaaaccatccttcggaacatccatatctaatgccagatgatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="41446" stop="39558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41152" g_stop="40733" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40732" i_stop="40245" i_length="488">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.109" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40244" g_stop="39858" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="809" r_length="388" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E710490" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41152" e_stop="40733"/>
          <exon e_start="40244" e_stop="39858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGA-AGCAGTATTGAGGATTGAAGAAGATAACAATGAACTGGAAGAGAAGGTGAAAAGAGTACAACAAGGAATGCAGCAAGTGATGGGTAAAAGTGGGAGCTTAGTATTCTGTGCAGGTGAGGTGCAGGTGTATACCCTGGAACAGCTGATGAGAGCTTCTGCTGAGCTTTTAGGTAGAGGAACTATGGGGACTACTTACAAAGCAGTGCTTGATAACCGTCTGATTGTGTGTGTGAAGAGATTGGACGGTGGGAGATTGGCCGGTACAAGTCAAGAAGAGTTTGAGCAGCATATGGAATCAGTAGGCGGGCTTAGGCACCCGAATTTGGTTCCTTTTCGGGCTTATTTTCAGGCCCGACAAGAAAGGCTTTTGGTCTATGATTATCAACCCAATGGCAGCCTGTTTTCTCTTATTCATGGTACGTTCTTCTCTGTATATCTCGTATTTATTATTTATATTAAGATGCATATAAATTGTATGAAAAATAATATTATTTTGACCTTCGATAAGTAGAATGTAATTTAAATAAACGGAATATTTTGAATATGTTGTCCAATCAAATTGGGTCCATACACCATACCCTATTGTTTCAGTTTCTCAACCCCAAGGTTCTCACAAACACAGAGAATCCTGCAGCTGACCGTGATGACATTTTTGGACACATATTTCTGTCATCGTAAAATACTTTTATGTTTGTTTAGTGTCCTTATTATTAAAGATTATAGTATTAAAATTGAAGCTAGTTCTGTCTGCAGTAAGAGTTATTTAAATTTTGTTTCACGTGTGGTTGCGTAACGTGAAGTTAATAAGAGTACGGTGGTTAGTATAAATAATAGCTTTAATGCATATTTAATGCCACGGTGGTACTGAAATAAAGTTTGACTAGTCAACTTGCGACGTGTACAGGTTCCAAGTCATCAAGAGCAAAGCCACTTCACTGGACTTCATGTTTGAAAATAGCAGAGGATGTAGCTCAAGGACTTTCCTACATCCACCAAGCATGGAGGCTTGTCCATGGCAATCTCAAGTCCTCTAACGTCCTCCTCGGCTCCGATTTCGAGGCGTGCATAACCGACTACTGTCTCTCCGTCCTAGCTGTCCCCTCGGACGATGAGAATCCTGATTCTGTAGCCTATCAGGCTCCAGAAATTCGTAAGCTGAATCACAACAACCACAACTACCACCGCCAAGCTAGTGCCAAGGCTGATGTCTATTCGTTTGGGGTTCTTTTGCTTGAACTTCTAACGGGG-AAGCATCCTTCGGAACATCCATATCTAATGCCAGATGATATGA</genome_strand>
        <mrna_strand>CAGATTTCAGTATTGAGGATTGAAGAAGATAACAATGAACTGGAAGAGAAGGTGAAAAGAGTACAACAAGGAATGCAGCAAGTGATGGGTAAAAGTGGGAGCTTAGTATTCTGTGCAGGTGAGGTGCAGGTGTATACCCTGGAACAGCTGATGAGAGCTTCTGCTGAGCTTTTAGGTAGAGGAACTATGGGGACTACTTACAAAGCAGTGCTTGATAACCGTCTGATTGTTTGTGTGAAAAGATTAGACGGTGGGAGATTGGCCGGTACAAGTCAAGAAGAGTTTGAGCAGCATATGGAATCAGTAGGCGGGCTTAGGCACCCGAATTTGGTTCCTTTTCGGGCTTATTTTCAGGCCCGACAAGAAAGGCTTTTGGTCTATGATTATCAACCCAATGGCAGCCTGTTTTCTCTTATTCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAAGTCATCAAGAGCAAAGCCACTTCACTGGACTTCATGTTTGAAAATAGCAGAGGATGTAGCTCAAGGACTTTCCTACATCCACCAAGCATGGAGGCTTGTCCATGGCAATCTCAAGTCCTCTAACGTCCTCCTCGGCTCCGATTTCGAGGCGTGCATAACCGACTACTGTCTCTCCGTCCTAGCTGTCCCCTCGGACGATGAGAATCCTGATTCTGTAGCCTATCAGGCTCCAGAAATTCGTAAGCTGAATCACAACAACCACCACCACCACCGCCAAGCTAGTGCCAAGGCTGATGTCTATTCGTTTGGGGTTCTTTTGCTTGAACTTCTAACGGGGAAACCATCCTTCGGAACATCCATATCTAATGCCAGATGATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272124" ref_strand="-" ref_description="SGN-E272124 [cLEN-4-B9]">
      <seq>attttctaaaatttaattgaacttctttttccacagagaaaatgagaacaatgttgatccatataatgatgtaaatgcttaaattagtgaagaatgttcggagggagatgaaccttcaaaagatgatggtgaaagtgaatcagatgaagatatcaataatgctagagatttttctcaaaatgacattggtataaatcttcctaatcaatttgaccccttggtaatgtagcaccatgtggaccccttggtaaaccaacaggaaaaatattccttgtatctctttttgctacaatctgaggcgtaaggacggtaactctctcccatgcccaaatctggacataatagataattataaactagataaaatttcaataaatactaagtgtaattattgctacaacagtgtactactttcacttaccaaagatttggtaagagtggcaagggtcaacctacatcaacattaaaatctgaattttgaccaaaataagtttctataaatcaattcaccaaaggaaaataacaaattcatcaactataagataaactaaatcaatgtatgacaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="48363" stop="43789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48063" g_stop="47842" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47841" i_stop="45923" i_length="1919">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45922" g_stop="45750" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="395" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45749" i_stop="44837" i_length="913">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44836" g_stop="44775" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="457" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44774" i_stop="44574" i_length="201">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44573" g_stop="44561" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="469" r_length="12" r_score="0.769"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44560" i_stop="44465" i_length="96">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44464" g_stop="44433" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="500" r_length="31" r_score="0.625"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44432" i_stop="44159" i_length="274">
            <donor d_prob="0.799" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44158" g_stop="44089" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="570" r_length="70" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E272124" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272124" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48063" e_stop="47842"/>
          <exon e_start="45922" e_stop="45750"/>
          <exon e_start="44836" e_stop="44775"/>
          <exon e_start="44573" e_stop="44561"/>
          <exon e_start="44464" e_stop="44433"/>
          <exon e_start="44158" e_stop="44089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTAAAATTTAATTGAACTTCTTTTTCCACAGAGAAAATGAGAACAATGTTGATCCATATAGTGATGTAAATGCTGAAATTAGTGAAGAAAGTTCGGAGGAAGATGAACCTTCAAAAGATGATGGTGAAAGTGAATCAGATGAAGATATCAATAATACTAGAGATTTTTCTCAAAATGACATTGGTATAAATCTTCCTAATCAATTTGAAAAGGATGTGTCTGAAGTGCAAAATGATGTACCCTATTTTAGAACATTAGATAACGAGGAAGACATTTTCATGTCTACATGTGAATCTGAGATGGAGTATTGTTCCGTCTGGTCTGAAGATGGCACAAAAGATTTGAAAAAAGGTATGTTTTTTAATAGTAAAGAAAAATTAAAACGAGCTGTGACAATTTGGAGTTTAAAAAAAAATAAAGAATTCAAGGTGGTGACATCAAACAAGAGTTTATGGTGTTGAATGCCTTGAATCGGACCCGCTACAAATAGAAAGGACGGGGGTCTCGCTACAAATAGAAAGGACGGGGGTCTCGCTACAAATAGAAAGGACGCCCCCGGCCCGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAATTTATTGGTGAACCACGTAAACTGTTGTCTTGTTTTTTGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACATATGGGTTGCAAGATGTAAGTTTCATACTTCATTGGGTTGCTTGTGGTTTCTCCGAGGACGAAAGGTTGGAGATAACCTTTGGAAAATAGGAAAATATATTGAAAATCATAGATGTGAGACTGAGGGGCTTTCTAGAGGTCATGCCAATCTAAATACCAATTTAATTGCATCTTTGATTCTTAATCAAATTGAAAAAAATCCCAAGGTTTTGGTGGTAGATGTCATTTCCAAGGTTCACGAAAAATTTGGTCATCAAATAACATACAGAAAAGCGTGGCTTGGGCGTCAACGCGCATTTGAATTGGTGTATGGTGACTTTAAGAAATCATTTAGTGACCTACCCAAATTTGGTCATATCTCAATAGCACATACCTTCCTACCCGCAACACCACCTTTTCCTCGCCGACGAATAGGAGGATGCAAATGGTCAGACATTAGCTCCTCTCTTCTATAATCTGCTTGAACATAAGTCCTATCTGCCTCTTGCACATATGCCAAACAATTAGATCCTTCATCCCGCACCATCGCACGAAACCCGTATAATTCCTCCATTGATGGATTTTCACCGAGAGATATTGCTTTATTAACCATCAAATGAATATGACGCACCTGTCCAAAATAACAAAACTTGCCTCAAAATTCAAAATTAACACATTCTAGCTATAGTTCGAAAGAAATCATTTATGCTCCAACAATTAATAAGCTAATATCAAACTTACCATTGTTTCGTATGTCGTCGCATTAGGCACGTAACCTTGTTGTTGTTGAGGACTCGAAATAGGATTACCAATGATAAAACGAGTAATACGTCTAAACCAAATAAGGTAGGGATCATCATACCGAAGTGATCCATGAAGGATTGGTGCATTCCATACATATTGATCAATATGGTTCCAAAAATGCAACCATTGTGCATGCTCTAACTCCCAATTTGTGTTTGATCTTCCTCGACGATCATGGTTAAAATGTGTAGCGTCAAATGCAAATGAAGATGGTATCGCTTGTACCAATCCAAATTGCCTCATAACTCGATCGGGTAAATGAACCTCAACAACATCCCAACAAAAAATTGAAACTCTAGCACGCCATATGTCTCTTCCAACGCGGCAATATTTGGGAAGACTCTCAATTATGTCAGAAGAATATGGTTCCCAAATAAACTATAAAAAAAAGTACTCACAATTACAATATATACGAAAGTTAAGAGAAAATTAGTGCAAAATCTTACCTGATTTTCTGTCATGGAATCCAGCGCATCCCTGAAAACTCTTAACACGTGTTTGGTAGTGTCGGTCCAACTAAAATGTGCATACCATCTAGCAGCATGTGGACCCCTTGGTAAACCAACAGGGAAAATATTCCTTGTATCTCTTTTTGCTACAATCTGAGGCGTAAGAACGATAACTCTCTCCCATGCCCAAATCTAGACATAATAGATAATTATAAACTAGATAAAATTTCAATAAATACTAAGTGTAATTATTGAGTATACCTGAAGTAGTGGTAGGAATCCAGCAATCTCATTTTGGCTACTTTGGGAGGCTTTACAAAGAAAACGATACAAATATGCTAGGGTTGCACTACCCCAACTGTAAGACCCTACTGTAGTGATATCCTCCAGCATAGGCAAGTACATAAGCTTTAAAAGACCACCAGATGTGTCTGCCAATAGTAAACCTGCAATCATCCAAAACATATAACACCTAGTTTTCTCATTAACCATATCCTGTATTGCCAAGTGGGGTAATCGTGGTTGAAGTCGCAAGTGTGTATTAAGCGCAGAAACCTTGAGACTACTATGTTTAAAGTCTTGAGGTTGTGGACTAAAACCTAATAATCTTTGACAAATATTTTGTCAATCCACTATAGACCTCTGTGGCTCATACCCAACTACCGCATTACCTTTCACGGGTAAGCCATACAATATCTCCACGTCCTGTAAAGTGATCGTACTCTCACCCGTCCTAAAGTGGAATGTATGAGTCTCAGGCCGCCATCTCTCAACTAATGCGGTGATTAAGCTACGATCAATTACAGGCCTATGAGACCTATAAATACCATATAATCCAGATAGTTTAATCACATCTAGGACTCGTGGATGAATGAGATGTTCATTTACTAGGTCCCAAAACTTCCCATCACATTTTCTTGTGTTCAAAATCATATTATCATTCCCTATCCATATATCTCGTGACCTATGAGTGAGCTGTCCAGTTAATACAGACGCATCAAGTGGACCGGGATCCAATTGGTATGCATTATTAGCAGCCATAAAATAAATACCTACACAAAAGTAAGAATACAACGTAACTTAGAAGCTTTTCTCAATCTACAAGTGCAAGAGTTGTTAAATATATAGTAGTTGTAAATTATGTTTACATGACAGAAACAATCAAAAGCACAACAGTTTACTGCTTTCACTTACCAAAGATTTGGTAAGAGTGGCAGGGGTTAACCTATAACCCACTCAATCACCCACCCGATCACTCACTTAGTTAATTACAGATATACCCTTGTGCTGTAAACTGATATATTCTCTCTATATGCATTTTTTAGGAGAGGCAACCCGAGTACTTCTAGGTAGGTTCTAAATAATGATAAATATATTATGTATGATATATTTACACAACATAAAACCATGCATGTACACACCAAATCGCAGGCACAGATTAAAAGACAAGGACAGAGCAACTTCAATAATTGCAAGAGACTATTCCTGTTTAGGATCATTATAGCTTCAATAGTTAAGTACTTGCTATCTATGTTAGCAGACAAAACGTTGACCAAAGCAGAGACTCTATTTGCGAGGGAAAATGAATTCCCTTCCTTCTTAAGCAAACTAAGCAACTGGTACTACAACAAATCGACCTATAACCCACTCACTCACTTAGGTAATAACAGAGTAAATCGACCTATAACGCAGTTACTCACTTAGCGATTTCAAAGGTTTAAGATGAAGAAGGTAGGGAGATGAAGAATCACAAGACATGGAAGCTTACCTCTAAGCAGTGAATGCTCCTACTGAGCTGGATCGCTACAACGAAGAGATCGAAAGCAGGGAGAAAGACGAATGTTTCGGTGGTTGCCTAAAGGAAAATAACAAATTCATCAACTATAAGATAAACTAAATCAATGTATGACAAAATT</genome_strand>
        <mrna_strand>ATTTTCTAAAATTTAATTGAACTTCTTTTTCCACAGAGAAAATGAGAACAATGTTGATCCATATAATGATGTAAATGCTTAAATTAGTGAAGAATGTTCGGAGGGAGATGAACCTTCAAAAGATGATGGTGAAAGTGAATCAGATGAAGATATCAATAATGCTAGAGATTTTTCTCAAAATGACATTGGTATAAATCTTCCTAATCAATTTGACCCCTTGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAGCACCATGTGGACCCCTTGGTAAACCAACAGGAAAAATATTCCTTGTATCTCTTTTTGCTACAATCTGAGGCGTAAGGACGGTAACTCTCTCCCATGCCCAAATCTGGACATAATAGATAATTATAAACTAGATAAAATTTCAATAAATACTAAGTGTAATTATTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAGTGTACTACTTTCACTTACCAAAGATTTGGTAAGAGTGGCAAGGGTCAACCTACA.........................................................................................................................................................................................................TCA-ACATTAAAA................................................................................................TCTGAATTTTGACCAAAATA-AGTTTCTATAA..................................................................................................................................................................................................................................................................................ATCAATTCACCAAAGGAAAATAACAAATTCATCAACTATAAGATAAACTAAATCAATGTATGACAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236354" ref_strand="+" ref_description="SGN-E236354 [cLED-13-K15]">
      <seq>ccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcgttaacaggggaaacagagagcttacagcagtctttatcttctgggtttcaaataacaaatctttctcaggtttcatccgccggccgtccacccttttctacttcttcattcaaaaggaagtgtagttccatggacgataccgccctcaagtgcagcagcgccggtggttcctctggccgttgccactgcccaaagaaaagaaaatcaagagtcaaaagagtagtaagagtccctgctattagcatgaaaatggctgatattccacctgatgattattcatggagaaaatatggtcaaaaacccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="57790" stop="56552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57490" g_stop="57063" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57062" i_stop="56957" i_length="106">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56956" g_stop="56852" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="533" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E236354" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57490" e_stop="57063"/>
          <exon e_start="56956" e_stop="56852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAGGTAAAAATCAACCCAAAGATTCCATTTTTATCACTATAAATCCATAAATATACAGATCTTTACAAATTTATCTGAGTTTTAACTGATCTATTAATAACTTATACAGAAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTGATATTCCACCTGATGATTATTCATGGAGAAAATATGGTCAAAAACCCAT</genome_strand>
        <mrna_strand>CCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCCTTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAG..........................................................................................................AAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTGATATTCCACCTGATGATTATTCATGGAGAAAATATGGTCAAAAACCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214020" ref_strand="+" ref_description="SGN-E214020 [cLEC-80-N2]">
      <seq>ttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcgttaacaggggaaacagagagcttacagcagtctttatcttctgggggttcaataacaatctttctcaggtttcatccgccggccgtcccactctttctacttcttcattcaaaaggaagtgtagttccatggacgataccgccctncagtgcagcagcgccggtggttcctctgggcgttgccactgcccaaagnaaagaaaatcagagtcaaaagagtagtaagagtccctgctattagcatgaaaatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58103" stop="56601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57803" g_stop="57063" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57062" i_stop="56957" i_length="106">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56956" g_stop="56901" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="795" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E214020" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57803" e_stop="57063"/>
          <exon e_start="56956" e_stop="56901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAGGTAAAAATCAACCCAAAGATTCCATTTTTATCACTATAAATCCATAAATATACAGATCTTTACAAATTTATCTGAGTTTTAACTGATCTATTAATAACTTATACAGAAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTG</genome_strand>
        <mrna_strand>TTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGGGTTCAATAAC-AATCTTTCTCAGGTTTCATCCGCCGGCCGTCCCACTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTNCAGTGCAGCAGCGCCGGTGGTTCCTCTGGGCGTTGCCACTGCCCAAAGNAAAG..........................................................................................................AAAATC-AGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267414" ref_strand="+" ref_description="SGN-E267414 [cLEI-8-A14]">
      <seq>cgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcgttaacaggggaaacagagagcttacagcagtctttatcttctgggtttcaaataacaaatctttctcaggtttcatccgccggccgtccacctctttctacttcttcattcaaaaagaagtgtagttccatggacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58028" stop="56826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57728" g_stop="57126" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E267414" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57728" e_stop="57126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGA</genome_strand>
        <mrna_strand>CGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAAGAAGTGTAGTTCCATGGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210727" ref_strand="+" ref_description="SGN-E210727 [cLEC-68-P4]">
      <seq>tcttcttcttcttcttcttctctctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcgttaacaggggaaacagagagcttacagcagtctttatcttctgggtttcaaataacaaatctttctcaggtttcatccgccggccgtccacctctttctacttcttcattcaaaggaagtgtagttcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58172" stop="56833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57873" g_stop="57133" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E210727" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57873" e_stop="57133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCA</genome_strand>
        <mrna_strand>TCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTC-AAAGGAAGTGTAGTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213511" ref_strand="+" ref_description="SGN-E213511 [cLEC-71-C7]">
      <seq>aaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcgttaacaggggaaacagagagcttacagcagtctttatcttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58133" stop="56919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57833" g_stop="57219" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E213511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57833" e_stop="57219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGG</genome_strand>
        <mrna_strand>AAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201479" ref_strand="+" ref_description="SGN-E201479 [cLEC-4-G12]">
      <seq>ttcactctttacaatttccttcttcttcttcttcttcttcttcttctctctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgcttctccatcgccggcgacttcgtttatgtcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58176" stop="56963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57872" g_stop="57263" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="637" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E201479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57872" e_stop="57263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCG</genome_strand>
        <mrna_strand>CTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343781" ref_strand="+" ref_description="SGN-E343781 [cTOF-12-E9]">
      <seq>ctctcttcactctttacaatttccttcttcttcttcttcttcttcttcttctctctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccatttaattttgcttctccatcgccggcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58176" stop="56978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57872" g_stop="57278" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="628" r_length="596" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E343781" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57872" e_stop="57278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCA-TTAATTTTGCTTCTCCATCGCCGGCGACT</genome_strand>
        <mrna_strand>CTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTTAATTTTGCTTCTCCATCGCCGGCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209763" ref_strand="+" ref_description="SGN-E209763 [cLEC-52-B3]">
      <seq>ttgattagaataagaagttcctcccatttttctctctcatttttatttctatatcttcattagctactacccctctcttcactctttacaattgccttcttcttcttcttcttcttcttcttctctctgttctatggtattgtaaacatggctggagacttaatgaccagtggttacggaaccgataatttttcatcaaaaatggaggaaaccgccgcacaagaagctgcaaccgccggacttcaaagcgttgagaaagtaatcagattgttgtctaaatctcatcaaaagcaacaacaacagcaaacgaattttcaggattcggcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaattttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58267" stop="56997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57967" g_stop="57297" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E209763" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57967" e_stop="57297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTAGAATAAGAATTTCCTCCCATTTTTCTCTCTCATTTTTATTTCTATATCTTCATTAGCTTCTACCCCTCTCTTCACTCTTTACAA-T---TTC--CTTCTTCTTCTTCTTC---TTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGC</genome_strand>
        <mrna_strand>TTGATTAGAATAAGAAGTTCCTCCCATTTTTCTCTCTCATTTTTATTTCTATATCTTCATTAGCTACTACCCCTCTCTTCACTCTTTACAATTGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGGAGACTTAATGACCAGTGGTTACGGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGCACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAAGTAATCAGATTGTTGTCTAAATCTCATCAAAAGCAACAACAACAGCAAACGAATTTTCAGGATTCGGCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305317" ref_strand="+" ref_description="SGN-E305317 [cLEX-15-L3]">
      <seq>acttaatgaccagtggttacagaaccgatcatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctgcacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccacattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58119" stop="56999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57819" g_stop="57299" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E305317" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57819" e_stop="57299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTT</genome_strand>
        <mrna_strand>ACTTAATGACCAGTGGTTACAGAACCGATCATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTGCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCACATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208351" ref_strand="+" ref_description="SGN-E208351 [cLEC-37-C8]">
      <seq>ttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactaccattaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58103" stop="57001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57803" g_stop="57301" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E208351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57803" e_stop="57301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATT</genome_strand>
        <mrna_strand>TTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286136" ref_strand="+" ref_description="SGN-E286136 [cLES-13-P9]">
      <seq>tgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgataacaaattcaaaaggttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttatctttctcctgcacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccatattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58113" stop="57009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57813" g_stop="57309" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E286136" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57813" e_stop="57309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTAC</genome_strand>
        <mrna_strand>TGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGATAACAAATTCAAAAGGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTATCTTTCTCCTGCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCATATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206850" ref_strand="+" ref_description="SGN-E206850 [cLEC-33-G16]">
      <seq>aaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaaaggaaagaagcatcaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58133" stop="57010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57833" g_stop="57310" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E206850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57833" e_stop="57310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTA</genome_strand>
        <mrna_strand>AAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E205565" ref_strand="+" ref_description="SGN-E205565 [cLEC-21-M11]">
      <seq>tcttcttcttcttcttcttctctctgttctgtggtattgtgaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58172" stop="57029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57873" g_stop="57329" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E205565" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57873" e_stop="57329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAA</genome_strand>
        <mrna_strand>TCTTCTTCTTCTTCTTCTTCTCTCTGTTCTGTGGTATTGTGAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208923" ref_strand="+" ref_description="SGN-E208923 [cLEC-38-A17]">
      <seq>ttcttcttcttcttctctctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggtcgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58168" stop="57031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57868" g_stop="57331" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E208923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57868" e_stop="57331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTG</genome_strand>
        <mrna_strand>TTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366074" ref_strand="+" ref_description="SGN-E366074 [cLPT-15-D4]">
      <seq>gtagacttaatgaccagtggttacagaaccgataatttttcatcaaagatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacagaaaacgaattttcaagattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagcaacaacaattacaacaatctattaagaatcaaaaaccccaaattgaagaaatcgaaaaaccccaaacttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58123" stop="57037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57823" g_stop="57337" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E366074" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57823" e_stop="57337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGT</genome_strand>
        <mrna_strand>GTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAGATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAGAAAACGAATTTTCAAGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCAACAACAATTACAACAATCTATTAAGAATCAAAAACCCCAAATTGAAGAAATCGAAAAACCCCAAACTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214472" ref_strand="+" ref_description="SGN-E214472 [cLEC-77-P3]">
      <seq>ttctacccctctcttcactctttacaatttccttcttcttcttcttcttcttcttcttctctctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttctcctccacttccatcaaagccacaacaattacaacaatccattaagaatcaaaacccccaaattgaagaaatcgaaaaaccccaagcttcaaataccaaaatctactgtccgaccccaattcaaagattgcctcctttacctcataaccatcttcaattagtgaaaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58176" stop="57039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57872" g_stop="57339" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="574" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E214472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57872" e_stop="57339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGG</genome_strand>
        <mrna_strand>CTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305311" ref_strand="+" ref_description="SGN-E305311 [cLEX-15-J5]">
      <seq>acttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattatcaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaacagaactggtcatgctagattccggcgaggaccaattagttctctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58119" stop="57210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57819" g_stop="57510" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E305311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57819" e_stop="57510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTC</genome_strand>
        <mrna_strand>ACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204339" ref_strand="+" ref_description="SGN-E204339 [cLEC-13-C10]">
      <seq>tctgttctatggtattgtaaacatggctgtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttgtctaaatctcatcaaaatcaacaacaacaacaaacgaattttcaggattcgtcatcgggtaattcctctgtttctgcagattataaagctgtagctgatgctgctgtaaacaaattcaaaaagttcatttctttacttgataaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58151" stop="57257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57851" g_stop="57557" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E204339" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57851" e_stop="57557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAAC</genome_strand>
        <mrna_strand>TCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATAAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244808" ref_strand="+" ref_description="SGN-E244808 [cLEF-2-E19]">
      <seq>tcgggccggtagacttaatgaccagtggttacagaaccgataatttttcatcaaaaatggaggaaaccgccgtacaagaagctgcaaccgccggacttcaaagcgttgagaaattaatcagattgttggctaaatctcatcaaaatcaacaacagcaacaaacgaattttcaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="58127" stop="57356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57819" g_stop="57656" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="176" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E244808" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57819" e_stop="57656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGAT</genome_strand>
        <mrna_strand>ACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGGCTAAATCTCATCAAAATCAACAACAGCAACAAACGAATTTTCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="67297" stop="68192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67597" g_stop="67918" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67597" e_stop="67918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGAATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCAAAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATGATTAAGTGTATAACACAAAGATATACA-TTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACGAAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301735" ref_strand="+" ref_description="SGN-E301735 [cLEX-9-P22]">
      <seq>gcgattcatctctccgctctaacaatctcgatcctcgtaatggtcgtgtcctccgccgccgtaacatcggcggcggcagaggacatgtcgattataagctacaacgaaaaacatcacacgatcggcgccggtcggaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagattaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaaaagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70321" stop="71270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70621" g_stop="70970" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E301735" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70621" e_stop="70970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGG</genome_strand>
        <mrna_strand>GCGATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATTAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706356" ref_strand="+" ref_description="SGN-E706356 [FA29DA01]">
      <seq>attcatctctccactctaacaatctcgatcctcgtaatggtcgtgtcctccgccgccgtaacatcggcggcggcagaggacatgtcgattataagctacaacgaaaaacatcacacgatcggcgccggtcggaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagataaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaagagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctccagcagttgctgccattgaagcagtaaacaaaataaagactggagactcgatctctttatccgagcaggagctagtagattgtgatacttcttctaaccatggttgtgacggtggtctcctggactatgcttttgaattcgttatcaaaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70324" stop="73029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70624" g_stop="71110" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72729" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="661" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E706356" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70624" e_stop="71110"/>
          <exon e_start="72557" e_stop="72729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCT-CAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGA</genome_strand>
        <mrna_strand>ATTCATCTCTCCACTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAGAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACCATGGTTGTGACGGTGGTCTCCTGGACTATGCTTTTGAATTCGTTATCAAAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730497" ref_strand="+" ref_description="SGN-E730497 [LA24BC08]">
      <seq>cactatctcgatcctcgtaatggtcgtgtcctccgccgccgtaacatcggcggcggcagaggacatgtcgattataagctacaacgaaaaacatcacacgatcggcgccggtcggaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagataaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaaaagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctcagcagttgctgccattgaagcagtaaacaaaataaagactggagactcgatctctttatccgagcaggagctagtagattgtgatacttcttctaacaatggttgtgacggtggtctcatggactatgcttttgaattcgttatcaaaaatggaggactagacactgaggaagattacccatatactggcgaggatggaagatgtgacctaacaaggaaaaatgccaaggttgtcaccattgacgggtatgaagatgttcctgctaatgatgaaaacgcaatgaaaaaggctatttgcagtcagcctgttagcgttgctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70342" stop="73295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70641" g_stop="71110" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72792" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="706" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72793" i_stop="72889" i_length="97">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72890" g_stop="72995" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="812" r_length="106" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E730497" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70641" e_stop="71110"/>
          <exon e_start="72557" e_stop="72792"/>
          <exon e_start="72890" e_stop="72995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGGGTTAGTACCGCGTTCTTAGTCTTGAAGGACTTATGGAAATGAAACTAATATACTTTCAAGTTATCACAATTAAAGATCTTGTTTGAAACAATTGCAGAAAAATGCCAAGGTTGTCACCATTGACGGGTATGAAGATGTTCCTGCTAATGATGAAAACGCAATGAAAAAGGCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTG</genome_strand>
        <mrna_strand>CACTATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGG.................................................................................................AAAAATGCCAAGGTTGTCACCATTGACGGGTATGAAGATGTTCCTGCTAATGATGAAAACGCAATGAAAAAGGCTATTTGCAGTCAGCCTGTTAGCGTTGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267554" ref_strand="+" ref_description="SGN-E267554 [cLEI-8-E2]">
      <seq>tcctcgtaatggtcgtgtcctccgccgccgtaacatcggcggcggcagaggacatgtcgattataagctacaacgaaaaacatcacacgatcggcgccggtcggaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagataaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaaaagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctcagcagttgctgccattgaagcagtaaacaaaataaagactggagactcgatctctttatccgagcagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70352" stop="72944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70652" g_stop="71110" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72644" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="547" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E267554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70652" e_stop="71110"/>
          <exon e_start="72557" e_stop="72644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGA</genome_strand>
        <mrna_strand>TCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337891" ref_strand="+" ref_description="SGN-E337891 [cTOE-14-K8]">
      <seq>tcgattataagctacaacgaaaaacatcacacgatcggcgccggtcggaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagataaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaaaagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70408" stop="72880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70708" g_stop="71110" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72580" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="427" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E337891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70708" e_stop="71110"/>
          <exon e_start="72557" e_stop="72580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCTCAGCAG</genome_strand>
        <mrna_strand>TCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E267556" ref_strand="+" ref_description="SGN-E267556 [cLEI-8-E6]">
      <seq>aaacatcacacgatcggcgccggtctgaccgatgacgaggtcatgtctatgtacgaatcgtggttagttgaacacaaaaaagtgtacaacgctttgggagaaaaagataaacggttccagatctttaaggacaaccttaaatacatcgatgaacataacgctatgccggagaaaagttataagctcggtttgactaagtttgctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70429" stop="71299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70729" g_stop="70999" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E267556" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70729" e_stop="70999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGT</genome_strand>
        <mrna_strand>AAACATCACACGATCGGCGCCGGTCTGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259108" ref_strand="+" ref_description="SGN-E259108 [cLEG-41-L15]">
      <seq>gctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctcagcagttgctgccattgaagcagtaaacaaaataaagactggagactcgatctctttatccgagcaggagctagtagattgtgatacttcttctaacaatggttgtgacggtggtctcatggactatgcttttgaattcgttatcaaaaatggaggactagacactgaggaagattacccatatactggcgaggatggaagatgtgacctaacaaggaaaaatgccaaggttgtcaccattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70630" stop="73215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70930" g_stop="71110" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72792" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="417" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72793" i_stop="72889" i_length="97">
            <donor d_prob="0.879" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72890" g_stop="72915" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="443" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E259108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70930" e_stop="71110"/>
          <exon e_start="72557" e_stop="72792"/>
          <exon e_start="72890" e_stop="72915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGGGTTAGTACCGCGTTCTTAGTCTTGAAGGACTTATGGAAATGAAACTAATATACTTTCAAGTTATCACAATTAAAGATCTTGTTTGAAACAATTGCAGAAAAATGCCAAGGTTGTCACCATTGA</genome_strand>
        <mrna_strand>GCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGG.................................................................................................AAAAATGCCAAGGTTGTCACCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368868" ref_strand="+" ref_description="SGN-E368868 [TUS-26-G7]">
      <seq>gctgatctgaccaacgaggagtataggtcggtttatttgggtacgaagccggatgctagtcgcaggttgtcgagtagacaaagtgatcggtatgctccgaaggtcggagataggttgccggaatctgttgattgggtgaagaaaggtgtgcttgttggtgttaaggatcaaggacaatgtgggagttgctgggctttctcagcagttgctgccattgaagcagtaaacaaaataaagactggagactcgatctctttatccgagcaggagctagtagattgtgatacttcttctaacaatggttgtgacggtggtctcatggactatgcttttgaattcgttatcaaaaatggaggactagacactgaggaagattacccatatactggcgaggatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="70630" stop="73075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70930" g_stop="71110" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72557" g_stop="72775" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="400" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E368868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70930" e_stop="71110"/>
          <exon e_start="72557" e_stop="72775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTGGTATGTGTACCTCTTACTTGTTTTTGTTTCACTTTTTATTACTTTATTTGTTTTCGGAAAAGCATTATGACTTTTGTTGATTATAGTTGATAGTGTTTTTTTATTAATTTATTTATTTATATGAATCTGATATACTTCATGTGCTACTATATAAATTTCAAACAAGAGTAAAGTACAGAATAATGAAATGAGCTTATGAAAATGTAGGATCCATATTACTTTGTTGTTTTGATTCATCCAATTTTTAGATGGGTTGATATGTGATAAAAATTTAACCCAGTTCCAAATTAGTGAATATTGATTTGCTAAGAGAAAACATTAATCCATTTAAATAATCAAATAATACATCTTGAGTTATGCTAGTTCAATTCAAATAACTTTTGGACTGATGCTTTACTAAGTCTATCTATTTTAAATATTTAAGTCAGCTTATATATTTGACACCTGATCCGAATTTTGATCCTTTATTAGTTATCAGGGAAAAGAATTAGAAATATATTTGAAATTTAATCGAAATTGTTTAATATGATATTAAAATTTGGAATGAATATTTTATTTGTACACTATTTAATAATTTTAGGTAAAAAATGTTCATAAAATTTGAAATGTAACAACAATTTGGTCAAAATTGAAATATTTTTACCATTCGAATAGAAAGAGAATAATCTCATAACGAGTATTATACTTTATTTTAGATTTTTATCTGTAAAAATAAATTTCTCTAGAAACTTTAACATATAATTAACTACAAAATGAAAATGATGTTTAAATTTCTTTTCACCGTCATTATTTATGAACAACAACTGGTCAAACGTGATAACTACAAACAGCAAAACGTGCAACATGAATCATATGAATAGAAAAAGCCTATGTTATTATTCATCCGTGACTAATTTGTAATGTAAAAAGTGATGTTCGAATGTGCAATTATCAAGGGGTATTTATAAAAAGCAATTTGTATTTGTTAGAAAATTGTTTTTTTAATTAAAGTTAATGGTTCAATAATTAATATTCTCAACTCTATCATACCTAATAATTCCATTTGTTATTCTTAAATAGTAGTATAAGATTAGTTAGCATTCTCAATTACACTATCGGTTGGGGAGGAGACAAAATCATATGGGGTTGGATATATTTGTTTAACCCAATTGGAAATATTCTAAGTAAATATTTCCGTTTTATCGATGCTACTTTGCTGGCTTTGATTTCCAATATTTTAAATTTAAGACTATCTTTATTTAAATTTTAAAATAAATAAACAAATTCTCTTCGTATCTAAGTCAGTCTATTGGATTTGTCCAAACTCAATTGCTTTATTTTAAACTCTATATTTATATTATAAAAATCAGTAAGTATAGTAGACGTCATTGTCCTAGAATTTAGCTGTGTGTTATATTATGTTGGTAGAAGAAGGATTTTAATTTAGACGTTTGGAAAATGAAACAGGGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAA</genome_strand>
        <mrna_strand>GCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319271" ref_strand="+" ref_description="SGN-E319271 [cTOB-16-E18]">
      <seq>gctattgcaagtcagcctgttagcgttgctattgaagctggtggcaaagacttccagcactataaatcgggcatctttactgggaagtgtggcgcagcagtggaccatggtgtggttgcagtgggatatggtagcgaaaatggcatggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="72662" stop="74067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72962" g_stop="73030" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73031" i_stop="73343" i_length="313">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73344" g_stop="73767" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="493" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E319271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72962" e_stop="73030"/>
          <exon e_start="73344" e_stop="73767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTGAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCGGTAAATAATCTTTACTTCAGACTGGCCTAGTCGTTAATAAAGATGTCTTTTGATTGAATTAGGTAGTGTTCTTGTTTCAATCAATAATCTAATTACGTACCTAACCAACACGATTTTTTGTATTGAATTTACATCGTATGATCATATTCTCATGCCTCAGAGGTAGATTTAGATGGACATGATCAATTGTTCCGTAATATTTTAGGCACAAAACATTTAAGTGAAAAGCACAAATATTTCCATAATTTCAAAAGAAGGGTTAAGAATGTTATATACATGTTAAATTTAAATCTTGAACTCGTCTATGCTCCAGGGCATCTTTACTGGGAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCA</genome_strand>
        <mrna_strand>GCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTGAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCG.........................................................................................................................................................................................................................................................................................................................GGCATCTTTACTGGGAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232923" ref_strand="+" ref_description="SGN-E232923 [cLED-8-L20]">
      <seq>gaagtgtggcgcagcagtggaccatggtgtggttgcagtgggatatggtagcgaaaatggcatggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccatatcagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73058" stop="74276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73358" g_stop="73793" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="73976" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="530" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E232923" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73358" e_stop="73793"/>
          <exon e_start="73883" e_stop="73976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCT</genome_strand>
        <mrna_strand>GAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATATCAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326938" ref_strand="+" ref_description="SGN-E326938 [cTOC-18-L21]">
      <seq>ttgcagtgggatatggtagcgaaaatggcatggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaaacatattgaaacaagatttcattgntctgctngttctgaattatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73090" stop="74542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73390" g_stop="73793" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74237" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="759" r_length="355" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E326938" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73390" e_stop="73793"/>
          <exon e_start="73883" e_stop="74237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCAC</genome_strand>
        <mrna_strand>TTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAAACATATTGAAACAAGATTTCATTGNTCTGCTNGTTCTGAATTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326992" ref_strand="+" ref_description="SGN-E326992 [cTOC-18-K21]">
      <seq>ttgcagtgggatatggtagcgaaaatggcatggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacatattgaaacaagatttcattgttctgctgtttctgatttatgtaatatttcctttatttcttcatcagggatgactatctgctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73090" stop="74534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73390" g_stop="73793" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74234" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="754" r_length="350" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E326992" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73390" e_stop="73793"/>
          <exon e_start="73883" e_stop="74234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTT</genome_strand>
        <mrna_strand>TTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAAC-ATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGT-AATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E213911" ref_strand="+" ref_description="SGN-E213911 [cLEC-76-P8]">
      <seq>gatatggtagcgaaaatggcatggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73099" stop="74297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73399" g_stop="73793" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="73997" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="510" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E213911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73399" e_stop="73793"/>
          <exon e_start="73883" e_stop="73997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGA</genome_strand>
        <mrna_strand>GATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202009" ref_strand="+" ref_description="SGN-E202009 [cLEC-7-B23]">
      <seq>atggattattggattgtgaggaactcatggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcanggaatgaaaaacactatctcttgaagtgtctccaatgggaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73119" stop="74301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73419" g_stop="73793" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="375" r_length="375" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74001" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="494" r_length="119" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E202009" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73419" e_stop="73793"/>
          <exon e_start="73883" e_stop="74001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGC</genome_strand>
        <mrna_strand>ATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCANGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212673" ref_strand="+" ref_description="SGN-E212673 [cLEC-73-A10]">
      <seq>catggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccaactgaaagtttatagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73144" stop="74356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73444" g_stop="73793" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74056" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="524" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E212673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73444" e_stop="73793"/>
          <exon e_start="73883" e_stop="74056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTAT</genome_strand>
        <mrna_strand>CATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAACTGAAAGTTTATAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207654" ref_strand="+" ref_description="SGN-E207654 [cLEC-32-J9]">
      <seq>catggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcaaggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73144" stop="74313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73444" g_stop="73793" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74012" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="480" r_length="130" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E207654" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73444" e_stop="73793"/>
          <exon e_start="73883" e_stop="74012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCA</genome_strand>
        <mrna_strand>CATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAAGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201736" ref_strand="+" ref_description="SGN-E201736 [cLEC-11-C6]">
      <seq>catggggtgcttcctggggagaacacggctacctcaggatgcagcgtaacattgctaacccaaagggtttgtgtggtattgctacagttgtttcttaccctgtcaagacaggccaaaatcccccgaaaccagctccatctcctccatcgccagtcaagccacctactactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73144" stop="73914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73444" g_stop="73614" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E201736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73444" e_stop="73614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTT</genome_strand>
        <mrna_strand>CATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368867" ref_strand="+" ref_description="SGN-E368867 [TUS-26-G7](-)">
      <seq>tcccccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaatgcagtttattattccatgtgatgcttctactttcatttcactaataatatcaaagactattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73262" stop="74607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73562" g_stop="73793" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74313" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="662" r_length="430" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E368867" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73562" e_stop="73793"/>
          <exon e_start="73883" e_stop="74313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATTGATAAACTCTCT</genome_strand>
        <mrna_strand>TCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATT-ATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377686" ref_strand="+" ref_description="SGN-E377686 [TUS-20-E2](-)">
      <seq>ccgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacccaatgcactagaacaatattgaaacaagatttcattgttctgctgttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73266" stop="74476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73566" g_stop="73793" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74173" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="519" r_length="291" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="542"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E377686" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73566" e_stop="73793"/>
          <exon e_start="73883" e_stop="74173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</genome_strand>
        <mrna_strand>CCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACCCAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233229" ref_strand="+" ref_description="SGN-E233229 [cLED-6-I5]">
      <seq>cgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73267" stop="74476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73567" g_stop="73793" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74173" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="518" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="542"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E233229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73567" e_stop="73793"/>
          <exon e_start="73883" e_stop="74173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</genome_strand>
        <mrna_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242066" ref_strand="+" ref_description="SGN-E242066 [cLED-27-J14]">
      <seq>cgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73267" stop="74476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73567" g_stop="73793" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74173" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="518" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="534"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E242066" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73567" e_stop="73793"/>
          <exon e_start="73883" e_stop="74173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</genome_strand>
        <mrna_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377687" ref_strand="+" ref_description="SGN-E377687 [TUS-20-E2]">
      <seq>cgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73267" stop="74476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73567" g_stop="73793" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74173" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="518" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="522" polyA_stop="542"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E377687" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73567" e_stop="73793"/>
          <exon e_start="73883" e_stop="74173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</genome_strand>
        <mrna_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238164" ref_strand="+" ref_description="SGN-E238164 [cLED-22-C3]">
      <seq>cgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73267" stop="74458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73567" g_stop="73793" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74158" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="503" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E238164" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73567" e_stop="73793"/>
          <exon e_start="73883" e_stop="74158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGA</genome_strand>
        <mrna_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233357" ref_strand="+" ref_description="SGN-E233357 [cLED-9-A12]">
      <seq>cgaaaccagctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73267" stop="74365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73567" g_stop="73793" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74065" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="410" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E233357" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73567" e_stop="73793"/>
          <exon e_start="73883" e_stop="74065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTC</genome_strand>
        <mrna_strand>CGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734801" ref_strand="+" ref_description="SGN-E734801 [LB13CE06]">
      <seq>ctccatctcctccatcgccagtcaagccacctactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtcctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcaggaatgactatctgctactttcacaatgcagtttattattccatgtgatacttctactttcattttcactaataatatcaaagactatatttataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73276" stop="74600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73576" g_stop="73793" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74298" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="636" r_length="418" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="643" polyA_stop="655"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E734801" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73576" e_stop="73793"/>
          <exon e_start="73883" e_stop="74298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGT-CTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCA-TTTCACTAATAATATCAAAGACT</genome_strand>
        <mrna_strand>CTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGAATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATACTTCTACTTTCATTTTCACTAATAATATCAAAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353948" ref_strand="+" ref_description="SGN-E353948 [cTOS-10-P24]">
      <seq>tactacttgtgatgatatgtacagttgcccatcaggaacaacgtgttgctgtgtctacgagtactatcacatgtgctttgcttggggttgctgccctatggaaggagctacttgctgtaaagaccataacagttgctgcccacatgattatcctgtctgcaatgttaaagccggcacctgctcaatcagcgagaataaccctctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaatgcagtttattattccatgtgatgcttctactttcatttcactaataatatcaaagactattgataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73307" stop="74607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73607" g_stop="73793" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73883" g_stop="74307" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="612" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="623"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E353948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73607" e_stop="73793"/>
          <exon e_start="73883" e_stop="74307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATCGTAAGTGATCCATCCCTACTTTGTAATTGTATGACGCACACAATATAATCATTTCCTTTATTAACGCGATTGTGTTTTTGTCTCTACAGAGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATTGATAAA</genome_strand>
        <mrna_strand>TACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC.........................................................................................AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATTGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352599" ref_strand="+" ref_description="SGN-E352599 [cTOS-9-J4]">
      <seq>tctttcagtcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaatgcagtttattattccatgtgatgcttctactttcatttcactaataatatcaaagactattgatannnaannaaannnnnnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73597" stop="74605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73897" g_stop="74302" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="445"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E352599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73897" e_stop="74302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATTG</genome_strand>
        <mrna_strand>TCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237016" ref_strand="+" ref_description="SGN-E237016 [cLEL-7-N1](-)">
      <seq>ggcaccagcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgnaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73602" stop="74539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73897" g_stop="74238" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="358"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E237016" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73897" e_stop="74238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTG-AAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACA</genome_strand>
        <mrna_strand>GGCACCAG-CAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGNAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237419" ref_strand="+" ref_description="SGN-E237419 [cLEL-7-N1](-)">
      <seq>ggcaccagcaaagcaatgtcacacattcttgccaaacctattggatccttcagcaatcagggaatgaaaaacactatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73602" stop="74539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73897" g_stop="74238" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="357"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E237419" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73897" e_stop="74238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACA</genome_strand>
        <mrna_strand>GGCACCAG-CAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E368650" ref_strand="+" ref_description="SGN-E368650 [TUS-22-H8](-)">
      <seq>aaaacgctatctcttgaagtgtctccaatgggaatgcgcaaattcgcagtgaatttgcaaaacctcatttccagctgaaagtttatagttataggtgattccaaaagcagaggataacagagttgctgctgatttctgtatagtgcttctttagtgcttgtcacacaatgcactagaacaatattgaaacaagatttcattgttctgctgtttctgatttatgtaaatatttcctttatttcttcatcagggatgactatctgctactttcacaatgcagtttattattccatgtgatgcttctactttcatttcactaataatatcaaaaaaatattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="+" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="73665" stop="74596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73965" g_stop="74294" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="349"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="+" ref_id="SGN-E368650" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73965" e_stop="74294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAA</genome_strand>
        <mrna_strand>AAAACGCTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370721" ref_strand="+" ref_description="SGN-E370721 [TUS-28-J6](-)">
      <seq>acgagacggataatcaaatggatgccaaaaaccagataattgggtcgaaaagagttcatgagtttccgttcaagtctatcaactttggctataatagcccacaaactatggctagtctacctttgtggtcgatgcctatagcagcaccgtcttgttatgctaatgcagcacatgagatgagttctttacatgacagagttacgaggaacactacaagcaaggatgtcaaggttgtcgatgaattaggccatttgaagtttgagacagatgaggaaaatgatcaattttccttaaaccagaacttaggcctggaaaataaggtagttgaggttggttttagacaattaggaaacggaggggctgctccaaatccaaattaattgcagtttagtgtaagtaacaaactgcaaagagtctaattacatagggatcttttagtggttgttaattagctttaacttgttgataaggtactgagttatatgtttatatggtaatgacatagtaatctttagcaatttgttctgttcatattatttattggatatacactttctaagaaatgtgaacatattgtttgaaaataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="79280" stop="78095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78980" g_stop="78400" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="599"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E370721" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78980" e_stop="78400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAGACGGATAATCAAATGGATGACAAAAACCAGATAATTGGGTCGAAAAGAGTTCATGAGTTTCCGTTCAAGTCTATCAACTTTGGCTATAATAGCCCACAAACTATGGCTAGTCTACCTTTGTGGTCGATGCCTATAGCAGCACCGTCTTGTTATGCTAATGCAGCACATGAGATGAGTTCTTTACATGACAGAGTTACGAGGAACACTACAAGCAAGGATGTCAAGGTTGTCGATGAATTAGGCCATTTGAAGTTTGAGACAGATGAGGAAAATGATCAATTTTCCTTAAACCAGAACTTAGGCCTGGAAAATAAGGTAGTTGAGGTTGGTTTTAGACAATTAGGAAACGGAGGGGCTGCTCCAAATCCAAATTAATTGCAGTTTAGTGTAAGTAACAAACTGCAAAGAGTCTAATTACATAGGGATCTTTTAGTGGTTGTTAATTAGCTTTAACTTGTTGATAAGGTACTGAGTTATATGTTTATATGGTAATGACATAGTAATCTTTAGCAATTTGTTCTGTTCATATTATTTATTGGATATACACTTTCTAAGAAATGTGAACATATTGTTTGG</genome_strand>
        <mrna_strand>ACGAGACGGATAATCAAATGGATGCCAAAAACCAGATAATTGGGTCGAAAAGAGTTCATGAGTTTCCGTTCAAGTCTATCAACTTTGGCTATAATAGCCCACAAACTATGGCTAGTCTACCTTTGTGGTCGATGCCTATAGCAGCACCGTCTTGTTATGCTAATGCAGCACATGAGATGAGTTCTTTACATGACAGAGTTACGAGGAACACTACAAGCAAGGATGTCAAGGTTGTCGATGAATTAGGCCATTTGAAGTTTGAGACAGATGAGGAAAATGATCAATTTTCCTTAAACCAGAACTTAGGCCTGGAAAATAAGGTAGTTGAGGTTGGTTTTAGACAATTAGGAAACGGAGGGGCTGCTCCAAATCCAAATTAATTGCAGTTTAGTGTAAGTAACAAACTGCAAAGAGTCTAATTACATAGGGATCTTTTAGTGGTTGTTAATTAGCTTTAACTTGTTGATAAGGTACTGAGTTATATGTTTATATGGTAATGACATAGTAATCTTTAGCAATTTGTTCTGTTCATATTATTTATTGGATATACACTTTCTAAGAAATGTGAACATATTGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321917" ref_strand="+" ref_description="SGN-E321917 [cTOB-29-E15]">
      <seq>ttttgtttctctagaacaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgtcccaagaaattatcctccacctaaatgggatcatggaggaggcttgcttgatcgcgctaaagggaacaagagaaactggattcttgtttgggaagatggtttttgtgacttttatgaatgtgaaagatcgaaaagggaacatgtaacgataaattttggtcctgaaatcttcttcaaaatgtctcatgaggtttattcttttggtgaaggattggtgggcaaagttgcagcagataatagtcacagatgggtgtctaaagatgccccaaatgaaaaagattcaaactttacttgctcatggaatatgtctattgaagctcaaccaagagcctggggagttcagtttaattcaggcattcagactattgctattatatctgttagggaaggcataattcagcttggctcatttaacaaggcatttgaagatcataatctagtattaaacattcagaggaaattcagctaccttcagagcataccgggtatttatgcaattcagagaccatttttgccnnatccacatccatatacttacaagccaaacaatgtcactctagttaacgagacggataatcaaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80718" stop="78657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80418" g_stop="80233" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80102" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="240" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79964" g_stop="79833" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="372" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79744" g_stop="79636" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="481" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79635" i_stop="79432" i_length="204">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79431" g_stop="79390" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="523" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79389" i_stop="79297" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79296" g_stop="79240" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="580" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79239" i_stop="79126" i_length="114">
            <donor d_prob="0.721" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79125" g_stop="78957" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="749" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E321917" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80418" e_stop="80233"/>
          <exon e_start="80155" e_stop="80102"/>
          <exon e_start="79964" e_stop="79833"/>
          <exon e_start="79744" e_stop="79636"/>
          <exon e_start="79431" e_stop="79390"/>
          <exon e_start="79296" e_stop="79240"/>
          <exon e_start="79125" e_stop="78957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTGGTAATGATATTAATACTAGGAGTATTTGTTTTTGTAAATTGGAGTTACGGGACAGTCAACCAACTGAGCTACTAAGGTTCATCTGAACTAGTAGTATTTGTGATTTTTATTAATAATTTGAGTTGATTTTATTTCAGGATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGGGTGAGATATTTCATTTTCTGGTTTGATAAGTAGAATGAGCTAAAATTACATTACGTACAAGTATTAAACTTTGTAATAAAATTTTCAGATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCTGTAAGCACCACTAGTCCTCATTTCCTCCTCACTCAAGATTTGAACTTTTTAGATTATCAGCTCAAAATTTAGTATTTATTTCGCGTTATATATATCTATGTCCCTATCAAAAATATTGAGTTCAGTTGAACCGGCTCGACTCTCTCTCTCGCCCTCCTTTTACAATTCTTACAAGTGTTGTGTTTGCGTTTTTTTTTTTGCCAGCAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAGGTAATGAAAGTTTAGCTGATGAGAAAAATATTATCACTCTTTATGTCATTTTTCAAAGATTTTAATTTAGGAAAGTTTCTGTTTTTTTGGCAGACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAGGTGTTTCTCGTCTCGTATCTATTGCTACTTGACGCGATTTCCTCCTTCTTAACGCTACTTAATCCTACGCCATTCATGTGTTTTCACTGATAACTTGTTCATGACTACTTGTAGGCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTGCCAATCCAACATCCATATACTTACAAGCCAAACAATGTCACTCTAGTTAACGAGACGGATAATCAAATGGATG</genome_strand>
        <mrna_strand>TTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG.........................................................................................................................................GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG........................................................................................ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT............................................................................................................................................................................................................CAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAG.............................................................................................ACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAG..................................................................................................................GCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTGCCNNATCCACATCCATATACTTACAAGCCAAACAATGTCACTCTAGTTAACGAGACGGATAATCAAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E321291" ref_strand="+" ref_description="SGN-E321291 [cTOB-23-I16]">
      <seq>tttctctagaacaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgtcccaagaaattatcctccacctaaatgggatcatggaggaggcttgcttgatcgcgctaaagggaacaagagaaactggattcttgtttgggaagatggtttttgtgacttttatgaatgtgaaagatcgaaaagggaacatgtaacgataaattttggtcctgaaatcttcttcaaaatgtctcatgaggtttattcttttggtgaaggattggtgggcaaagttgcagcagataatagtcacagatgggtgtctaaagatgccccaaatgagaaagattcaaactttacttgctcatggaatatgtctattgaagctcaaccaagagcctggggagttcagtttaattcaggcattcagactattgctattatatctgttagggcaggcataattcagcttggctcatttaacaaggcatttgaagatcataatctagtattaaacatgcggaggaaattcagctaccttcagagcataccgggtatttatgcaattcagagaccatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80713" stop="78730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80413" g_stop="80233" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80102" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="235" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79964" g_stop="79833" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="367" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79744" g_stop="79636" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="476" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79635" i_stop="79432" i_length="204">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79431" g_stop="79390" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="518" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79389" i_stop="79297" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79296" g_stop="79240" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="575" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79239" i_stop="79126" i_length="114">
            <donor d_prob="0.721" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79125" g_stop="79030" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="671" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E321291" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80413" e_stop="80233"/>
          <exon e_start="80155" e_stop="80102"/>
          <exon e_start="79964" e_stop="79833"/>
          <exon e_start="79744" e_stop="79636"/>
          <exon e_start="79431" e_stop="79390"/>
          <exon e_start="79296" e_stop="79240"/>
          <exon e_start="79125" e_stop="79030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTGGTAATGATATTAATACTAGGAGTATTTGTTTTTGTAAATTGGAGTTACGGGACAGTCAACCAACTGAGCTACTAAGGTTCATCTGAACTAGTAGTATTTGTGATTTTTATTAATAATTTGAGTTGATTTTATTTCAGGATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGGGTGAGATATTTCATTTTCTGGTTTGATAAGTAGAATGAGCTAAAATTACATTACGTACAAGTATTAAACTTTGTAATAAAATTTTCAGATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCTGTAAGCACCACTAGTCCTCATTTCCTCCTCACTCAAGATTTGAACTTTTTAGATTATCAGCTCAAAATTTAGTATTTATTTCGCGTTATATATATCTATGTCCCTATCAAAAATATTGAGTTCAGTTGAACCGGCTCGACTCTCTCTCTCGCCCTCCTTTTACAATTCTTACAAGTGTTGTGTTTGCGTTTTTTTTTTTGCCAGCAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAGGTAATGAAAGTTTAGCTGATGAGAAAAATATTATCACTCTTTATGTCATTTTTCAAAGATTTTAATTTAGGAAAGTTTCTGTTTTTTTGGCAGACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAGGTGTTTCTCGTCTCGTATCTATTGCTACTTGACGCGATTTCCTCCTTCTTAACGCTACTTAATCCTACGCCATTCATGTGTTTTCACTGATAACTTGTTCATGACTACTTGTAGGCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTG</genome_strand>
        <mrna_strand>TTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG.........................................................................................................................................GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG........................................................................................ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAGAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT............................................................................................................................................................................................................CAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAG.............................................................................................ACTATTGCTATTATATCTGTTAGGGCAGGCATAATTCAGCTTGGCTCATTTAACAAG..................................................................................................................GCATTTGAAGATCATAATCTAGTATTAAACATGCGGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271838" ref_strand="+" ref_description="SGN-E271838 [cLEM-8-B11]">
      <seq>taaaaggcaataaagatcatctctttcctctcatcaacttttgtgatttgaagtagaacactctgcacctttttgtttctctagaacaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgtcccaagaaattatcctccacctaaatgggatcatggaggaggcttgcttgatcgcgctaaagggaacaagagaaactggattcttgtttgggaagatggtttttgtgacttttatgaatgtgaaagatcgaaaagggaacatgtaacgataaattttggtcctgaaatcttcttcaaaatgtctcatgaggtttattcttttggtgaaggattggtgggcaaagttgcagcagataatagtcacagatgggtgtctaaagatgccccaaatgaaaaagattcaaactttacttgctcatggaatatgtctattgaagctcaaccaagagcctggggagttcagtttaattcaggcattcagactattgctattatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80788" stop="78979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80488" g_stop="80233" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80102" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="310" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79964" g_stop="79833" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="442" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79744" g_stop="79636" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="551" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79635" i_stop="79432" i_length="204">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79431" g_stop="79390" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="593" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79389" i_stop="79297" i_length="93">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79296" g_stop="79279" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="611" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E271838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80488" e_stop="80233"/>
          <exon e_start="80155" e_stop="80102"/>
          <exon e_start="79964" e_stop="79833"/>
          <exon e_start="79744" e_stop="79636"/>
          <exon e_start="79431" e_stop="79390"/>
          <exon e_start="79296" e_stop="79279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTGGTAATGATATTAATACTAGGAGTATTTGTTTTTGTAAATTGGAGTTACGGGACAGTCAACCAACTGAGCTACTAAGGTTCATCTGAACTAGTAGTATTTGTGATTTTTATTAATAATTTGAGTTGATTTTATTTCAGGATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGGGTGAGATATTTCATTTTCTGGTTTGATAAGTAGAATGAGCTAAAATTACATTACGTACAAGTATTAAACTTTGTAATAAAATTTTCAGATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCTGTAAGCACCACTAGTCCTCATTTCCTCCTCACTCAAGATTTGAACTTTTTAGATTATCAGCTCAAAATTTAGTATTTATTTCGCGTTATATATATCTATGTCCCTATCAAAAATATTGAGTTCAGTTGAACCGGCTCGACTCTCTCTCTCGCCCTCCTTTTACAATTCTTACAAGTGTTGTGTTTGCGTTTTTTTTTTTGCCAGCAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAGGTAATGAAAGTTTAGCTGATGAGAAAAATATTATCACTCTTTATGTCATTTTTCAAAGATTTTAATTTAGGAAAGTTTCTGTTTTTTTGGCAGACTATTGCTATTATATCT</genome_strand>
        <mrna_strand>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG.........................................................................................................................................GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG........................................................................................ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT............................................................................................................................................................................................................CAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAG.............................................................................................ACTATTGCTATTATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326756" ref_strand="+" ref_description="SGN-E326756 [cTOC-25-O13]">
      <seq>tgatttgaagtagaacactctgcacctttttgtttctctagaacaaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgtcccaagaaattatcctccacctaaatgggatcatggaggaggcttgcttgatcgcgctaaagggaacaagagaaactggattcttgtttgggaagatggattttgtgacttttatgaatgtgaaagatcgaaaagggaacatgtaacgataaattttggccctgaaatcttcttcaaaatgtctcatgaggtttattcttttggtgaaggattggtgggcaaagttgcagcagataatagtcacagatgggtgtctaaagatgccccaaatgaaaaacattccaactttacttgctcatggaataagtctattgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80745" stop="79336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80445" g_stop="80233" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80102" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="268" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79964" g_stop="79833" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="400" r_length="132" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="79744" g_stop="79636" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="509" r_length="109" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E326756" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80445" e_stop="80233"/>
          <exon e_start="80155" e_stop="80102"/>
          <exon e_start="79964" e_stop="79833"/>
          <exon e_start="79744" e_stop="79636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAAC-AAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTGGTAATGATATTAATACTAGGAGTATTTGTTTTTGTAAATTGGAGTTACGGGACAGTCAACCAACTGAGCTACTAAGGTTCATCTGAACTAGTAGTATTTGTGATTTTTATTAATAATTTGAGTTGATTTTATTTCAGGATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGGGTGAGATATTTCATTTTCTGGTTTGATAAGTAGAATGAGCTAAAATTACATTACGTACAAGTATTAAACTTTGTAATAAAATTTTCAGATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT</genome_strand>
        <mrna_strand>TGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG.........................................................................................................................................GATTCTTGTTTGGGAAGATGGATTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGCCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG........................................................................................ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAACATTCCAACTTTACTTGCTCATGGAATAAGTCTATTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E265079" ref_strand="+" ref_description="SGN-E265079 [cLEI-2-B22]">
      <seq>gaagtagaacactctgcacctttttgtttctctagaacaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgtcccaagaaattatcctccacctaaatgggatcatggaggaggcttgcttgatcgcgctaaagggaacaagagaaactggattcttgtttgggaagatggtttttgtgacttttatgaatgtgaaagatcgaaaagggaacatgtaacgataaattttggtcctgaaatcttcttcaaaatgtctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80739" stop="79555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80439" g_stop="80233" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80102" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="261" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79964" g_stop="79855" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="371" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E265079" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80439" e_stop="80233"/>
          <exon e_start="80155" e_stop="80102"/>
          <exon e_start="79964" e_stop="79855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTGGTAATGATATTAATACTAGGAGTATTTGTTTTTGTAAATTGGAGTTACGGGACAGTCAACCAACTGAGCTACTAAGGTTCATCTGAACTAGTAGTATTTGTGATTTTTATTAATAATTTGAGTTGATTTTATTTCAGGATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATG</genome_strand>
        <mrna_strand>GAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG.........................................................................................................................................GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370722" ref_strand="+" ref_description="SGN-E370722 [TUS-28-J6]">
      <seq>taaaaggcaataaagatcatctctttcctctcatcaacttttgtgatttgaagtagaacactctgcacctttttgtttctctagaacaaaaaaaaaaaaaaagagagaaaatggaaggtggactccccatgctaaattgtctgttacaacatacacttagaagtgtctgtacttgctctgactcttcttctaatgcttctgagtgggtctatgctgttttctggagaattgacccaagaaattatcctccacctaaatgggatcatgtaggaggcttgcttgatcgtgctaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="80788" stop="79816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80488" g_stop="80233" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80155" g_stop="80116" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="296" r_length="40" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E370722" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80488" e_stop="80233"/>
          <exon e_start="80155" e_stop="80116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAAGTAAGCACATTTTAATAATCAAAATTTGGACATTACTAAGAATAGTGTTAGTAAATTGTTCTTGATTTTTGTTGCAGATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGG</genome_strand>
        <mrna_strand>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGACCCAAGAAATTATCCTCCACCTAA.............................................................................ATGGGATCATGTAGGAGGCTTGCTTGATCGTGCTAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227049" ref_strand="+" ref_description="SGN-E227049 [cLED-1-N4](-)">
      <seq>gatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattctttcgtttatctgtaagctagcctctggatgtcaatattgagctcattcttgaaccgcgctcttattcaattcaaccttagtagtttctaacaggttgcacatccctgttgaagttcttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="82982" stop="81777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82682" g_stop="82560" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82442" g_stop="82067" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="499" r_length="376" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E227049" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82682" e_stop="82560"/>
          <exon e_start="82442" e_stop="82067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTATAATTGTCAATTA</genome_strand>
        <mrna_strand>GATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352161" ref_strand="+" ref_description="SGN-E352161 [cTOS-13-C6]">
      <seq>ctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattctttcgtttatctgtaagctagcctctggatgtcaatattgagctcattcttgaaccgcgctcttattcaattcaaccttagtagtttctaacaggttgcacatccctgttgaagttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85631" stop="81786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85331" g_stop="85316" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82076" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="564" r_length="367" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E352161" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85331" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTATAAT</genome_strand>
        <mrna_strand>CTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354097" ref_strand="+" ref_description="SGN-E354097 [cTOS-16-H3]">
      <seq>ctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattctttcgtttatctgtaagctagcctctggatgtcaatattgagctcattcttgaaccgcgctcttattcaattcaaccttagtagtttctaacagggtgcacatccctgtttgagttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85631" stop="81786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85331" g_stop="85316" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="197" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82082" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="558" r_length="361" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E354097" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85331" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTG</genome_strand>
        <mrna_strand>CTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGGTGCACATCCCTGTTTGAGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734617" ref_strand="+" ref_description="SGN-E734617 [LB13AF01]">
      <seq>caagaaagaaaaaaacaatagtaaaaaagtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatacaaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagcgaattgtttccaaaccttgaagcatcaaagcagattgagcttttcatggtggggaatgaatttgttttagattcaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattcttttcgttatctgtaagctagcctctggatgtcaataatgagggcattcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86016" stop="81848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85705" g_stop="85316" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="411" r_length="389" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="592" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82148" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="888" r_length="296" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E734617" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85705" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAA</genome_strand>
        <mrna_strand>AAAAAAGTAAAAA-TAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATACAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGCGAATTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTCATGGTGGGGAATGAATTTGTTTTAGATTCAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTTCGTTATCTGTAAGCTAGCCTCTGGATGTCAATAATGAGGGCATTCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712422" ref_strand="+" ref_description="SGN-E712422 [FB04DC05]">
      <seq>aataaattcctaattcctttcaagaaagaaaaaaaaaagagtaaaaaagtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccaaaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatacaaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagcgaattgtttccaaaccttgaagcatcaaagcagattgagcttttcatggtggggaatgaatttgttttagattcaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattctttcgtttatctgtaagctagcctctgaatgtcaatattgaggtcatctttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86016" stop="81848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85713" g_stop="85316" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="431" r_length="397" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="612" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82157" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="899" r_length="287" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="907" polyA_stop="917"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E712422" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85713" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTC</genome_strand>
        <mrna_strand>AAAAGAGTAAAAAAGTAAA-AATAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAAAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATACAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGCGAATTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTCATGGTGGGGAATGAATTTGTTTTAGATTCAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGAATGTCAATATTGAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374234" ref_strand="+" ref_description="SGN-E374234 [TUS-33-N13](-)">
      <seq>ctacgatcgctttcatctttgctattcgcgtgttcatggtcaagggtttctacatcatcacatatgccttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttatttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaagcatcaaagcagattgagctttttatggtggggaatgaatttgttttagatacaaattcgcctagatggctgtatttttcaccgcataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgtcacacatcttgattctttcgtttatctgtaagctagcctctggatgtcaatattgattttctgagctcattcttgaaccgctcttattcaattcaaccgtagtagtttctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85823" stop="81809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85523" g_stop="85316" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="389" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82161" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="672" r_length="283" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="727" polyA_stop="737"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E374234" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85523" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGA</genome_strand>
        <mrna_strand>CTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTCAAGGGTTTCTACATCATCACATATGCCTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTATTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTTATGGTGGGGAATGAATTTGTTTTAGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGCATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGTCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727288" ref_strand="+" ref_description="SGN-E727288 [LA14BB01]">
      <seq>attcctttcaagaaagaaaaaaaaaagagtaaaaaagtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatacaaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagcgaattgtttccaaaccttgaagcatcaaagcagattgagcttttcatggtggggaatgaatttgttttagattcaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaagctgccacacatcttgattctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86016" stop="81898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85713" g_stop="85316" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="419" r_length="397" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="600" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82198" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="846" r_length="246" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E727288" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85713" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTC</genome_strand>
        <mrna_strand>AAAAGAGTAAAAAAGTAAA-AATAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATACAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGCGAATTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTCATGGTGGGGAATGAATTTGTTTTAGATTCAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E398404" ref_strand="+" ref_description="SGN-E398404 [TUS-40-L6](-)">
      <seq>ttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtacttccgttagtcgtaggcatcatccagatttgttggcaatattatcttcttgaattagtagtttggcataattttcttttccttggcaggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttttgagcttgggttatgtcattgaatatatgattatcaatgagttcttagattataaaacttagttctcctagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83257" stop="81922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82957" g_stop="82560" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82442" g_stop="82222" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="619" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E398404" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82957" e_stop="82560"/>
          <exon e_start="82442" e_stop="82222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAA</genome_strand>
        <mrna_strand>TTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTTTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232219" ref_strand="+" ref_description="SGN-E232219 [cLEL-5-D12](-)">
      <seq>tcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattctacagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaaattcgcctagatggctgtatttttcaccggataggtttctgagcttgggttatgtcattgaatatatgattatcaatgagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85639" stop="81950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85339" g_stop="85316" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="205" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82250" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="398" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E232219" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85339" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCT</genome_strand>
        <mrna_strand>TCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTACAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359670" ref_strand="+" ref_description="SGN-E359670 [cLPP-5-C21]">
      <seq>acggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttatttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaagcatcaaagcagattgagctttttatggtggggaatgaatttgttttagatacaaattcgcctagatggctgtatttttcaccgcataggtttctgagcttgggttatgtcattgaatatatgattatccaatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85691" stop="81953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85391" g_stop="85316" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="257" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82253" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="449" r_length="192" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E359670" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85391" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTAT-CAATGAGT</genome_strand>
        <mrna_strand>ACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTATTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTTATGGTGGGGAATGAATTTGTTTTAGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGCATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCCAATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232575" ref_strand="+" ref_description="SGN-E232575 [cLEL-5-D12](-)">
      <seq>tacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcgaatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaggttcaaagtggaatgagctttttatggtggggaatgaatttgtttttgatacaagttcgcctagatggctgtatttttcaccggataggtttatgagcttgggttatgtcattgaataaatgattatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85773" stop="81956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85473" g_stop="85316" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="339" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82256" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="526" r_length="187" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E232575" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85473" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATG</genome_strand>
        <mrna_strand>TACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGAATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAGTTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTATGAGCTTGGGTTATGTCATTGAATAAATGATTATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E374235" ref_strand="+" ref_description="SGN-E374235 [TUS-33-N13]">
      <seq>ggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgccttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttatttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaagcatcaaagcagattgagctttttatggtggggaatgaatttgttttagatacaaattcgcctagatggctgtatttttcaccgcataggtttctgagcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85944" stop="81986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85644" g_stop="85316" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="510" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82286" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="668" r_length="158" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E374235" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85644" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGG</genome_strand>
        <mrna_strand>GGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCCTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTATTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTTATGGTGGGGAATGAATTTGTTTTAGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGCATAGGTTTCTGAGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210989" ref_strand="+" ref_description="SGN-E210989 [cLEC-69-H18]">
      <seq>tcagataccataaattcctaattcctttcaagaaaaaaaaaaaaaaaagtaaaaaagtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcttcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaccttgaggttcaagtggaatgagctttttatggtggggaatgaatttgtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86045" stop="82040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85713" g_stop="85316" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="439" r_length="397" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="620" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82340" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="721" r_length="101" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E210989" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85713" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTG</genome_strand>
        <mrna_strand>AAAAAAGTAAAAAAGTAA-AAATAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCC-AACCTTGAGGTTC-AAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365168" ref_strand="+" ref_description="SGN-E365168 [cLPP-17-H21]">
      <seq>aaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttgctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgtacatggttcaaggtttctacatcatcacatgtgccttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttatttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaactgatgagagaagtgtttccaaaccttgaagcatcaaagcagattgagctttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85988" stop="82087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85688" g_stop="85316" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="554" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82362" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="636" r_length="82" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E365168" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85688" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTG-AGGTTCAAAGTGGAATGAGCTTTTTATG</genome_strand>
        <mrna_strand>AAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTGCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTACATGGTTCAAGGTTTCTACATCATCACATGTGCCTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTATTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAAGCATCAAAGCAGATTGAGCTTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346499" ref_strand="+" ref_description="SGN-E346499 [cTOF-23-J16]">
      <seq>aattcctaattcctttcaagaaaaaaaaaaaaaaaaagtaaaaaagtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcttcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaggcagcgttacgggaagaaagcaccatcaactgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86016" stop="82113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85713" g_stop="85316" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="428" r_length="397" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82560" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="609" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82442" g_stop="82413" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="639" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E346499" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85713" e_stop="85316"/>
          <exon e_start="82740" e_stop="82560"/>
          <exon e_start="82442" e_stop="82413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACTGAT</genome_strand>
        <mrna_strand>AAAAAAGTAAAAAAGTAAAAA-TAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAGGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235432" ref_strand="+" ref_description="SGN-E235432 [cLED-11-C5]">
      <seq>ccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagcgttgctttccacttgcacatgtactacgtaatcttgcctaccaaagctaaagtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtacttccgttagtcgtaggcatcatccagatttgatggcaatattatcttcttgaattagtagtttggcataattctcttttccttggcaggtactcactatcaaaagcagtctgcattgcttttgtgtcgacattcttcagtgcctttgatgtgcctgtattttggccaattgtgctattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatataaatatgtgcccttcacatttggcaagcagcgttacgggaagaaagcaccatcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83391" stop="82116"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83091" g_stop="82560" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="532" r_length="532" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82442" g_stop="82416" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="559" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E235432" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83091" e_stop="82560"/>
          <exon e_start="82442" e_stop="82416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAGGTACATATAAAATCTAGCTCCAATTACGTTGGTGTCTTTTCACATTAGCCAGACTGCATTACCTCTGTACTTTACCATAATATTCTGAAAATGATTGGAAATACTTCTTTTCTACAGCGTTACGGGAAGAAAGCACCATCAACT</genome_strand>
        <mrna_strand>CCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGCGTTGCTTTCCACTTGCACATGTACTACGTAATCTTGCCTACCAAAGCTAAAGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGATGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTCTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTCGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTGTGCTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG.....................................................................................................................CGTTACGGGAAGAAAGCACCATCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712983" ref_strand="+" ref_description="SGN-E712983 [FB06BE11]">
      <seq>gtaaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatgaagaggcaaataatgcacatggtcaaatacaaatatgtgcccttcacatttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85999" stop="82265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85699" g_stop="85316" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82565" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="559" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E712983" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85699" e_stop="85316"/>
          <exon e_start="82740" e_stop="82565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCA</genome_strand>
        <mrna_strand>GTAAA-AATAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATACAAATATGTGCCCTTCACATTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E286166" ref_strand="+" ref_description="SGN-E286166 [cLES-13-N14]">
      <seq>aaaaaatggacgtcggtggcggagcagttgccggcgacggtgcttcttctacttcctccgccgtgtctcagtggacctttaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgtttgtttcaacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85976" stop="82320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85676" g_stop="85316" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82620" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="482" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E286166" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85676" e_stop="85316"/>
          <exon e_start="82740" e_stop="82620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATG</genome_strand>
        <mrna_strand>AAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTTACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545813" ref_strand="+" ref_description="SGN-E545813 [TUS-68-N17]">
      <seq>ctttctcagataccataaattcctaattcctttcaagaaaaagaaaaaaaaaagagagtaaaaaagtaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgccttgggaatctatataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctattggttggtactgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86016" stop="82332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85750" g_stop="85316" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82632" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="550" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E545813" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85750" e_stop="85316"/>
          <exon e_start="82740" e_stop="82632"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCAGATACCATAAATTCCTAATTCCTTTCAAG---AA-AAAAAAAAAA-A-AGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTT</genome_strand>
        <mrna_strand>CTTTCTCAGATACCATAAATTCCTAATTCCTTTCAAGAAAAAGAAAAAAAAAAGAGAGTAAAAAAGTAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCCTTGGGAATCTATATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E362786" ref_strand="+" ref_description="SGN-E362786 [cLPP-2-M23]">
      <seq>ggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgccttaggaatctacataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttggccaattttgttattctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85944" stop="82347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85644" g_stop="85316" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82647" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="423" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E362786" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85644" e_stop="85316"/>
          <exon e_start="82740" e_stop="82647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTAT</genome_strand>
        <mrna_strand>GGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCCTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262939" ref_strand="+" ref_description="SGN-E262939 [cLEG-59-J20]">
      <seq>atgttcagattgtctggaaaaagaaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgttgaccttgagcttctgtgatatgcttcagccagtgcaagggcagagcagacttcttctagaccttcctcctttacacacacttagttatctgaattttgttatttcgcaatatctttgcgtgctttattattttaaactgatgcttggtgtccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagtgttgctttccacttgcacatgtactaggtaatcttgcctaccaaagctaaggtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtacttccgttagtcgtaggcatcatccagatttgttggcaatattatcttcttgaattagtagtttggcataattttcttttccttggcaggtactcactatcaaaagcagtctgcattgcttttgtngtgacattcttcagtgcctttgatgtgcctgtattttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83712" stop="82364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83412" g_stop="82664" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E262939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83412" e_stop="82664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGC</genome_strand>
        <mrna_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTNGTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241642" ref_strand="+" ref_description="SGN-E241642 [cLED-36-N11]">
      <seq>taaaaataaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcttcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgctttaggaatctacataatccagctgcttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85996" stop="82366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85697" g_stop="85316" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82666" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="457" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E241642" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85697" e_stop="85316"/>
          <exon e_start="82740" e_stop="82666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTG</genome_strand>
        <mrna_strand>TAAAAATAAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTGCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227048" ref_strand="+" ref_description="SGN-E227048 [cLED-1-N4]">
      <seq>ccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagtgttgctttccacttgcacatgtactaggtaatcttgaataccaaagctaaggtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtacttccgttagtcgtaggcatcatccagatttgttggcaatattatcttcttgaattagtagtttggcataattttcttttccttggcaggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83391" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83091" g_stop="82668" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E227048" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83091" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTT</genome_strand>
        <mrna_strand>CCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGAATACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240303" ref_strand="+" ref_description="SGN-E240303 [cLED-25-C13]">
      <seq>ccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagtgttgctttccacttgcacatgtactaggtaatcttgcctaccaaagctaaggtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtacttccgttagtcgtaggcatcatccagatttgttggcaatattatcttcttgaattagtagtttggcataattttcttttccttggcaggtactcactatcaaaagcagtctgcattgcttttgtgttgacattcttcagtgcctttgatgtgcctgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83391" stop="82368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83091" g_stop="82668" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E240303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83091" e_stop="82668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTT</genome_strand>
        <mrna_strand>CCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355650" ref_strand="+" ref_description="SGN-E355650 [cLHT-1-P3]">
      <seq>tttctcagataccataaattcctaattcctttcaagaaaaagaaaaaaaaaagagagtaaaaaagtaaaaataaaaaataaaaaatggacgtcggtggcggagcagttgccggcgacggtgcctcttctacttcctccgccgtgtctcagtggaccttcaccttatcacagcgatatcaacaccttctggataaatcgacacctcacatcctttatcggtggatcttcttcgctacgatcgctttcatctttgctattcgcgtgttcatggttcaaggtttctacatcatcacatatgccttgggaatctatataatccagctccttattgctttcctttcccctcaagtcgatccagaagttgacggtcctacccttcccactcgcggatccgatgagtttcgccctttcgttcgtcgccttcctgaatttaaattctggtactcactatcaaaagcagtctgcattgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86016" stop="82407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85749" g_stop="85316" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82740" g_stop="82707" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="474" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E355650" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85749" e_stop="85316"/>
          <exon e_start="82740" e_stop="82707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAGATACCATAAATTCCTAATTCCTTTCAAG---AA-AAAAAAAAAA-A-AGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTGGTGCTTCATCCATCTAACTCATTTATGTGCCAATTTACATATTTTTTTTTTTGCTTACTTGTGAAGTTTAGATTTGTTTGATATGCATCTGCTTTGCGATCTCATTATGCAGTTTGATTTTCATATAGTTTCTGTGAATAGAGATCAAATCTGATGGTTAATTTCTGGTAGGAAATCAAATCTGATGCTAAGATGTGTTGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAAATGTGTTGTCCTGATCATGGGATTATGTTGGTCCATTCCTGCTATTAGGTTATATAGGTTTTTATGGTGCAGTTTTGTCGATGTTTTTCTGTGCAGCAGTTCCACAGTCCTTGGCTTTTGTTTTATGATGTAGCCATCCTTGACTGGAACAGTTATAGTAACTCCTGCTTCAGTCTCTTTTATTCCTTTCGTGAGACCGTCTGTAGTACTCATAGCTACAGCCCTAACTCGATTATTTCCTAATAATTGATGTTCCTCATAAGCCACATTAATTGGTTGACCAGCACTATCATGATGGTCAGTGTGTCAATCAATTATTACAAGTTTCTACAGGTTGGAAATGTCCTAATTCAAACTGTCCATGTTTTCAAAATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTT</genome_strand>
        <mrna_strand>TTTCTCAGATACCATAAATTCCTAATTCCTTTCAAGAAAAAGAAAAAAAAAAGAGAGTAAAAAAGTAAAAATAAAAAATAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCCTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCCTTGGGAATCTATATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTCACTATCAAAAGCAGTCTGCATTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254394" ref_strand="+" ref_description="SGN-E254394 [cLEG-27-E16]">
      <seq>atgttcagattgtctggaaaaagaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgttgaccttgagcttctgtgatatgcttcagccagtgcaagggcagagcagacttcttctagaccttcctcctttacacacacttagttatctgaattttgttatttcgcaatatctttgcgtgctttattattttaaactgatgcttggtgtccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagtgttgctttccacttgcacatgtactaggtaatcttgcctaccaaagctaaggtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtcccttcgttagtcgtaggcatcatccagatttgntggcaatattatcttcttgaattagtagtttggcataattttcttttccttggcaggtactcactatcaaaagcagtctgcattgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83712" stop="82409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83412" g_stop="82709" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="703" r_length="703" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E254394" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83412" e_stop="82709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTT</genome_strand>
        <mrna_strand>ATGTTCAGATTGTCTGGAAAAAG-AAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTCCCTTCGTTAGTCGTAGGCATCATCCAGATTTGNTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258791" ref_strand="+" ref_description="SGN-E258791 [cLEG-50-F11]">
      <seq>atgttcagattgtctggaaaaagaaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgttgaccttgagcttctgtgatatgcttcagccagtgcaagggcagagcagacttcttctagaccttcctcctttacacacacttagttatctgaattttgttatttcgcaatatctttgcgtgctttattattttaaactgatgcttggtgtccaggccagcttgagcatacctcaagtattccactatgtacctgatgcagtgttgctttccacttgcacatgtactaggtaatcttgcctaccaaagctaaggtggatggtatttgaactctaatctccaaggtttgcacctgcttcattaaccactagcccacacccttgggtgcgttgcgctccgaggattcccattgaagtcgatcacttaatcatatagcagaactttttcattgtgcgcttcatttatttgcctgtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83712" stop="82528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83412" g_stop="82828" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E258791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83412" e_stop="82828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACT</genome_strand>
        <mrna_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258343" ref_strand="+" ref_description="SGN-E258343 [cLEG-49-F4]">
      <seq>atgttcagattgtctggaaaaagaaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgttgaccttgagcttctgtgatatgcttcagccagtgcaagggcagagcagacttcttctagaccttcctcctttacacacacttagttatctgaattttgttatttcgcaatatctttgcgtgctttattattttaaactgatgcttggtgtccaggccaccttgagcatacctcaagtattccactatgtacctgatgcagggttgctttccacttgcacatgtactaggtaatcttgcctaccaaagctaaggtggatgggatttgaactctaatctccaagggttgcacctgcttcattaaccactaacccacacccttgggtgcgttgcgctcccacgattcccattgaagtcgatcactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83712" stop="82578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83412" g_stop="82878" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E258343" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83412" e_stop="82878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTA</genome_strand>
        <mrna_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCACCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGGGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGGATTTGAACTCTAATCTCCAAGGGTTGCACCTGCTTCATTAACCACTAACCCACACCCTTGGGTGCGTTGCGCTCCCACGATTCCCATTGAAGTCGATCACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264256" ref_strand="+" ref_description="SGN-E264256 [cLEG-70-B18]">
      <seq>atgttcagattgtctggaaaaagaaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgttgaccttgagcttctgtgatatgcttcagccagtgcaagggcagagcagacttcttctagaccttcctcctttacacacacttagttatctgaattttgttatttcgcaatatctttgcgtgctttattattttaaactgatgcttggtgtccaggccagcttgagcatacctcaagtattccactatgtacttgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83712" stop="82744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83412" g_stop="83044" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E264256" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83412" e_stop="83044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGC</genome_strand>
        <mrna_strand>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACTTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E264689" ref_strand="+" ref_description="SGN-E264689 [cLEG-72-K5]">
      <seq>tgttcagattgtctggaaaaagaaaagtaaacttggggaccagcttctgaccagtcatgctgatcaccaagtctatttggtttccacccagtagttctttgtctctcccagtaatggttcctgatccgatgttgtaatagttttagtagccgggatgaatatgaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="83711" stop="82944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83411" g_stop="83243" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E264689" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>169</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83411" e_stop="83243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGT</genome_strand>
        <mrna_strand>TGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333064" ref_strand="+" ref_description="SGN-E333064 [cTOD-19-A12]">
      <seq>tcatatatgacaggataataaattaatagtatcacaattagctgttttgtactgcctacataactttgatagatagaaaaatcctacttacaaaaaaaggaaatagatggataggaaacgcacgtattattactgataagaattcatgtgtcgatagcaccgagcatgaagcaatgacatacggcttggttagatctgtttactgaattggctgtataaataatgtcatttgttttattcatcgactgtacttgtttctgtaccatttattttttaaaataaaatcctcgtgttgcctaccatatttttattttcaagatatttttaaatttaatgatcgaatgagctctcttttcttgcaatatgtctcttaactggagttgaatataactcatgtaactagtataaatgcttcttattagcttgagtgattttaatggggaagttctgtgattatatggagtagcttaggtgattttatttggaagctctcagttacatgggacaacttatcttaatcagctaataattatagatagtattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="84631" stop="83484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84331" g_stop="83785" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E333064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84331" e_stop="83785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAA</genome_strand>
        <mrna_strand>TCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330925" ref_strand="+" ref_description="SGN-E330925 [cTOD-10-I8]">
      <seq>agcatttgaacctactaactccaacaatccagattcttatcgtatgactaaagaggatgctctaacattagtttctccatcgtgcagcatgctatgcgtgagattgagatagatagcttgggatgtctgatttctctaaattcaatcagtgcaaattattggaagagtctctcaaagctcaaaagcatgaaaatatgttgcatcccttgtaaaaaaagggtggaaatatgatgcatcctaattctgccctaaaactctattcctaatttgaattatcgatctcatatatgacaggatactaaattgatagtatcacaattagctgctttgtactgcctacataactttgatagatagaaaaatcctacttacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="84912" stop="83937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84612" g_stop="84237" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E330925" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84612" e_stop="84237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAA</genome_strand>
        <mrna_strand>AGCATTTGAACCTACTAACTCCAACAATCCAGATTCTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTCTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTATTCCTAATTTGAATTATCGATCTCATATATGACAGGATACTAAATTGATAGTATCACAATTAGCTGCTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708322" ref_strand="+" ref_description="SGN-E708322 [FA35BG10]">
      <seq>cgttgtcaagatgtggattgctttaaaaagtcagatttatatttttgggtttctgaatactatgttctaaattaagaattcgcatttcacataagcatttgtacattccacagcatagttattttttgaatctgctgagaagtgttgagttgatgagtttagttatgttgttgtatattcatggttatggaagtttatgctccactgaaaaaaacttctgatctgtttgctaattgctacctattccggtcttcacatgatgatctaggatctgataaagaatagaagattcggagtggatagaaggaaaactactttcttaaactattttgtagtatgacccttagccaagcttaagatacaatgcttggcggaattagcttgaaaccattttgggcatcaaatttacattttattttttgttttgacctggtatttctggacttttttcagtggtgcctttgaccttccactctactagtatgcaatattggttgaatcgttcagcatttgaacctactaactccaacaatccagatttttatcgtatgactaaagaggatgctctaacattagtttctccatcgtgcagcatgctatgcgtgagattgagatagatagcttgggatgtctgatttctttaaattcaatcagtgcaaattattggaagagtctctcaaagctcaaaagcatgaaaatatgttgcatcccttgtaaaaaaagggtggaaatatgatgcatcctaattctgccctaaaactcttttcctaatttgaattatggatctcatatatgacaggataataaattaatagtatcacaattagctgttttgtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85416" stop="83978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85117" g_stop="84278" g_length="840"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="840" r_length="840" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E708322" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85117" e_stop="84278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTG</genome_strand>
        <mrna_strand>CGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396415" ref_strand="+" ref_description="SGN-E396415 [TUS-40-L6]">
      <seq>gcttaagatacaatgcttggcggaattagcttgaaaccattttgggcatcaaatttacattttattttttgttttgacctggtatttctggacttttttcagcggtgcctttgaccttccactctactagtatgcaatattggttgaatcgttcagcatttgaacctactaactccaacaatccagatttttatcgtatgactaaagaggatgctctaacattagtttctccatcgtgcagcatgctatgcgtgagattgagatagatagcttgggatgtctgatttctttaaattctttctttgcaaattattggaacagtctctcggaggggagagagcatgaaaatatgttgcatcccttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="85066" stop="84100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84766" g_stop="84400" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E396415" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84766" e_stop="84400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCA-AAAGCATGAAAATATGTTGCATCCCTTGTAAA</genome_strand>
        <mrna_strand>GCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGCGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCTTTCTTTGCAAATTATTGGAACAGTCTCTCGGAGGGGAGAGAGCATGAAAATATGTTGCATCCCTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709325" ref_strand="+" ref_description="SGN-E709325 [FA51BG08]">
      <seq>agcgaaattcctaattcctttcaagaaaaaaaaaaaaaagtaaaaaagtaaaaataaaaaataaaaaatggacgtcggggggcggagcaattgccggcaacggggcttcttctacttcctcccccgggtctcaggggaccttccccttatcacagcgatatcaaaccctttgggataaatcgacacctcaaatcctttatcgggggatcttcttcgctacaatcgcttccatctttgctattcgcgggttcatggttcacggtttctacatcatcaaatatgttttaggaatctacataacccccccccttattgttttcctttcccctcaagccaacccaaaagttgacggccctacccttcccactcgcggatccaataagtttcgccctttcgttcgcccccttcctgaatttaaattttggaactcacaatcaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="86034" stop="84999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85739" g_stop="85316" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E709325" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85739" e_stop="85316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGG-CGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG</genome_strand>
        <mrna_strand>AGC-GAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAATAAAAAATGGACGTCGGGGGGCGGAGCAATTGCCGGCAACGGGGCTTCTTCTACTTCCTCCCCCGGGTCTCAGGGGACCTTCCCCTTATCACAGCGATATCAAACCCTTTGGGATAAATCGACACCTCAAATCCTTTATCGGGGGATCTTCTTCGCTACAATCGCTTCCATCTTTGCTATTCGCGGGTTCATGGTTCACGGTTTCTACATCATCAAATATGTTTTAGGAATCTACATAACCCCCCCCCTTATTGTTTTCCTTTCCCCTCAAGCCAACCCAAAAGTTGACGGCCCTACCCTTCCCACTCGCGGATCCAATAAGTTTCGCCCTTTCGTTCGCCCCCTTCCTGAATTTAAATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339844" ref_strand="+" ref_description="SGN-E339844 [cTOF-3-I5]">
      <seq>ggacttacaacaggaaggaatctggtggcttgcacattcagaaggtggtcgagctttggtgggagttcgagttccagttccagaaataattagaaaaaaggagttgactgagatcaatcttatgctcaaatattctgctattgaagttatttgacttttattacatttatatattcttgaatttgcatgctagttaatgcaacaacagattcagccttcatggttggaccttgttcgtgagttttccttctttttgtttttgcttatgttgatgctatttttgggcttggtatgctccttcaacgtggagttcttcatttctcctgggagaggactcaacattctatcttctgaaaaagaaaggaaggaaaaggttataatccaagaagttggtgattttggaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="90838" stop="89833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90538" g_stop="90124" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E339844" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90538" e_stop="90124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTGGACTACGTGTTTTA</genome_strand>
        <mrna_strand>GGACTTACAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTGGAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745793" ref_strand="+" ref_description="SGN-E745793 [GI|47105077]">
      <seq>agaattaaatccgaactaattttattttcaggtccgctatcaaactcacctgtaaattgcaacttcatccgaaaaagacgaacgcaaaagggctggtgaaatagtaagtggatatagtgaccttgacctatctttgttattctagtggtggatgggtcagtcggcttccaccgtcgccggagctcaaaaccgtataaagtctagatcttcgccggtgatttcttctatgaaggaaattgatgattccgacgatgttatcgatgtattcgatgtaggagagtttgattattcttctaatattcctgatgagtgtttagcttgcattttccatttccttagctcaggtgaccggaaaagttcttctctcgtctgccgccgttggctccgtgtggaaggccagagccgtcaccgtctctcgcttaatgcacaatcggaacttgtggctgttgttcctgtgattttctctaggtttgattcggtaacgaaactcgctttgaaatgtgaccgtagatctgcgagtattggggatgaggcgttggtgcttatctctttaaggtgccggaacctaactcgtttgaagcttcggtcgtgccgggagcttactgatgctggaatggaatcttttgcgaagaactgtaagggtttgaagaaactatcttgtggatcttgtgcttttggagctaaagggatgaacgccgtgttgaataactgctcggctctggaagagttgtccgtgaagcggctgcgtggtatcacagatggggctgcagctgagccaattggtcctggtgttgcagggggttctctgagagttatttgccttaaggaactctacaatggacagtgttttggaccgttgattattggatcgaagagtttgcggacgctgaagctgttccgttgttctggagattgggataagattctggaagtgattgctgaacaagtcagtgaacttgttgcaattcatcttgagaggcttcaggtcagtgataccggtcttgctgctatatctaaacgttccattcttgaaattctgcaccttgtgaaaacgcctgaatgcactaataatggtctaaaggctgttgctgaaaactgtaagcttctaagaaagcttcacattgatgggtggaagactaacaggataagtgatgatgggttaattgctgtggcaaaacattgccccaatttacaagaattggttttaataggtgtgaatccaacatgtgctagtttggagaagttggctacaaattgcttgaatttagagagattagctctgtgtggaagtgaaactgttggggatccagaactgtcgtgcatagctgcgaaatgtattgcattaagaaaactttgtataaagagttgcccagtatccgatcagggtatggaagcgcttgctagtggatgcccaaatttggtaaaagtaaaggttaagaaatgtagattggtgacttctggaagtgcagattggttgcggacaactaggggctccgttgctgtgaacttggatacacctgaacctgaaaatcctgatgcaagtgccagtgatggtggtttgcctgaagttggcaatgaaattaggcaggtggctggccaagtaagaggtgtaagtattgcatcaagcagtactgggaggtcaaattcctttaaggccaggctaggacttgcaacaggaaggaatctggtggcttgcacattcagaaggtggtcgagctttggtgggagttcgagttccagttccagaaataattagaaaaaaggagttgactgagatcaatcttatgctcaaatattctgctattgaagttatttgacttttattacatttatatattcttgaatttgcatgctagttaatgcaacaacagattcagccttcatggttggaccttgttcgtgagttttccttctttttgtttttgcttatgttgatgctatttttgggcttggtatgctccttcaacgtggagttcttcatttctcctgggagaggactcaacattctatcttctgaaaaagaaaggaaggaaaaggttataatccaagaagttggtgattttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="92501" stop="89836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92201" g_stop="90138" g_length="2064"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2064" r_length="2064" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2066" polyA_stop="2080"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E745793" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2064</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92201" e_stop="90138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTAAATCCGAACTAATTTTATTTTCAGGTCCGCTATCAAACTCACCTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGGCTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCAAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACATGTGCTAGTTTGGAGAAGTTGGCTACAAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTG</genome_strand>
        <mrna_strand>AGAATTAAATCCGAACTAATTTTATTTTCAGGTCCGCTATCAAACTCACCTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCGGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGCAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAACGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGGCTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCAAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACATGTGCTAGTTTGGAGAAGTTGGCTACAAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234946" ref_strand="+" ref_description="SGN-E234946 [cLEL-6-M13](-)">
      <seq>gtatccgatcagggtatgaaagcgcctgctagtggatgcccaaatttggtaaaagtaaaggttaagaaatgtagattggtgacttctggaagtgcagattggttgcggacaactaggggttccattgctgtgaacttggatacacctgaacctgaaaatcctgatgcaagtgccagtgatggtggtttgcctgaagttggcaatgaaattaggcaggtggctggccaagtaagaggtgtaagtattgcatcaagcagtactgggaggtcaaattcctttaaggccaggctaggacttacaacaggaaggaatctggtggcttgcacattcagaaggtggtcgagctttggtgggagttcgagttccagttccagaaataattagaaaaaaggagttgactgagatcaatcttatgctcaaatattctgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="91129" stop="90099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90829" g_stop="90394" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="448"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E234946" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90829" e_stop="90394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAA</genome_strand>
        <mrna_strand>GTATCCGATCAGGGTATGAAAGCGCCTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGTTCCATTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTACAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E234850" ref_strand="+" ref_description="SGN-E234850 [cLEL-6-M13](-)">
      <seq>aaaagtaaaggttaagaaatgtagattggtgacttccggaagtgcagattggttgcggacaactaggggttccattgctgtgaacttggatacacctgaacctgaaaatcctgatgcaagtgccagtgatggtggtttgcctgaagttggcaatgaaattaggcaggtggctggccaagtaagaggtgtaagtattgcatcaagcagtactgggaggtcaaattcctttaaggccaggctaggacttacaacaggaaggaatctggtggcttgcacattcagaaggtggtcgagctttggtgggagttcgagttccagttccagaaataattagaaaaaaggagttgactgagatcaatcttatgctcaaatattctgctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="91079" stop="90099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90779" g_stop="90394" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="398"/>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E234850" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90779" e_stop="90394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAA</genome_strand>
        <mrna_strand>AAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCCGGAAGTGCAGATTGGTTGCGGACAACTAGGGGTTCCATTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTACAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365422" ref_strand="+" ref_description="SGN-E365422 [cLPT-2-C4]">
      <seq>ttttggaccgttgattattggatcgaagagtttgcggacgctgaagctgttccgttgttctggagattgggataagattctggaagtgattgctgaacaagtcagtgaacttgttgaaattcatcttgagaggcttcaggtcagtgataccggtcttgctgctatatctaaatgttccattcttgaaattctgcaccttgtgaaaacgcctgaatgcactaataatggtctaaagactgttgctgaaaactgtaagcttctaagaaagcttcacattgatgggtggaagactaacaggataagtgatgatgggttaattgctgtggcgaaacattgccccaatttacaagaattggttttaataggtgtgaatccaacttgtgctagtttggagaagttggctacgaattgcttgaatttagagagattagctctgtgtggaagtgaaactgttggggatccagaactgtcgtgcatagctgcgaaatgtattgcattaagaaaactttgtataaagagttgcccagtatccgatcagggtatggaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="91655" stop="90507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91355" g_stop="90807" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E365422" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91355" e_stop="90807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGGCTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCAAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACATGTGCTAGTTTGGAGAAGTTGGCTACAAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGC</genome_strand>
        <mrna_strand>TTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGACTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCGAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACTTGTGCTAGTTTGGAGAAGTTGGCTACGAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717480" ref_strand="+" ref_description="SGN-E717480 [FC01BD08]">
      <seq>tggcggccaatcggccgaattcccatggggatccgatgagcttccaccgtcgccggagctcaaaaccgtataaagtctagatcttcgccggtgatttcttctatgaaggaaattgatgattccgacgatgttatcgatgtattcgatgtaggagagtttgattattcttctaatattcctgatgagtgtttagcttgcattttccatttccttagctcaggtgaccggaaaagttcttctctcgtctgccgccgttggctccgtgtggaaggccagagccgtcaccgtctctcgcttaatgcacaatcggaacttgtggctgttgttcctgtgattttctctaggtttgattcggtaacgaaactcgctttgaaatgtgaccgtagatctgcgagtattggggatgaggcgttggtgcttatctctttaaggtgccggaacctaactcgtttgaagcttcggtcgtgccgggagcttactgatgctggaatggaatcttttgcgaagaactgtaagggtttgaagaaactatcttgtggatcttgtgcttttggagctaaagggatgaacgccgtgttgaataactgctcggctctggaagagttgtccgtgaagcggctgcgtggtatcacagatggggctgcagctgagccaattggtcctggtgttgcagggggttctctgagagttatttgccttaaggaactctacaatggacagtgttttggaccgttgattattggatcgaagagtttgcggacgctgaagctgttccgttgttctggagattgggataagattctggaagtgattgctgaacaagtcagtgaacttgttgaaattcatcttgagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="92350" stop="90922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="91222" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="856" r_length="831" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E717480" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="91222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGC</genome_strand>
        <mrna_strand>TGG-GGATCCG--A-TGAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298667" ref_strand="+" ref_description="SGN-E298667 [cLET-44-M8]">
      <seq>gtgtaaattgcaacttcatccgaaaaagactaacgcaaaagggctggtgaaatagtaagtggatatagtgaccttgacctatctttgttattctagtggtggatgggtcagtcagcttccaccgtcgccggagctcaaaaccgtataaagtctagatcttcgccggtgatttcttctatgaaggaaattgatgattccgacgatgttatcgatgtattcgatgtaggagagtttgattattcttctaatattcctgatgagtgtttagcttgcattttccatttccttagctcaggtgaccggaaaagttcttctctcgtctgccgccgttggctccgtgtggaaggccagagccgtcaccgtctctcgcttaatgcacaatcggaacttgtggctgttgttcctgtgattttctctacgtttgattcggtaacgaaactcgctttgaaatgtgaccgtagatctgcgagtattggggatgaggcgttggtgcttatctctttaaggtgccggaacctaactcgtttgaagcttcagtcgtgccgggagcttactgatgctggaatggaatcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0080H23-xdQmb/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0080H23.1" temp_strand="-" temp_description="C04SLm0080H23.1  CU928590.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0080H23 sequenced_by:sanger upload_account_name:uk">
        <position start="92451" stop="91276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92152" g_stop="91576" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0080H23.1" gen_strand="-" ref_id="SGN-E298667" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0080H23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92152" e_stop="91576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTG</genome_strand>
        <mrna_strand>GTGTAAATTGCAACTTCATCCGAAAAAGACTAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTACGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCAGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>122</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2003" PGL_stop="2712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2003" e_stop="2712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="2003" e_stop="2712" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2003" stop="2380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2035" stop="2712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATGAAATTGGTGTTTGAATCACAAAGAGGAGAGTGGGGAAAAGCAGAAAGAGTGATTGGTTGTGGTTACAATCCAAGCCAAAAGAAGGTATTTTTCACAGTGGATTCATTGTTAGTACATGAAATTTTTTGCAAAACAGAAGAATTTGGAAATCCACTTTACCCAATTTTAGCATCAAATGGTGATATTTTAGTACTAGTAAATCTTGGACAAAGTGTATTCAAATATCAACCAGCAAATCTACATAGGACACCAAATCCTTGCTTCATTGGTCCAATAATGCAAAATGATTCATCAATTCTTGGATATGAAGACAGCAAAGAACTTTTCTCAATGGGTAGAATTGATGCACAATGGCTTAATAGAAGTAATACAAGAAGTAATAACAATACTGTTAATAGTTTAAAACAAGTATTAGATTATGATTTGGAGTCTGAAGGTGATTTATTTGAAATTGTTTTAGATAATTGTAATAGTTATTCAAGATCTCCTAACCCTTTGTAACATATTATAAAAAGAATAATTCAAATGTAACATTATAATTTTGTACATGTTTTTTTTTTTTTGGGGTTGTATGAGACCATGAAGGGGCACTAAATTAGAAGATATTGGTTTTATTTTATTTGTTAATTTGTTAGTTGTTGTAACTGTTAAGTCACTAAATTAAAGATGATGTTGATTATAATTGTATTGTAATTTGATTAATGA</gDNA_template>
            <first_frame> E  *  N  W  C  L  N  H  K  E  E  S  G  E  K  Q  K  E  *  L  V  V  V  T  I  Q  A  K  R  R  Y  F  S  Q  W  I  H  C  *  Y  M  K  F  F  A  K  Q  K  N  L  E  I  H  F  T  Q  F  *  H  Q  M  V  I  F  *  Y  *  *  I  L  D  K  V  Y  S  N  I  N  Q  Q  I  Y  I  G  H  Q  I  L  A  S  L  V  Q  *  C  K  M  I  H  Q  F  L  D  M  K  T  A  K  N  F  S  Q  W  V  E  L  M  H  N  G  L  I  E  V  I  Q  E  V  I  T  I  L  L  I  V  *  N  K  Y  *  I  M  I  W  S  L  K  V  I  Y  L  K  L  F  *  I  I  V  I  V  I  Q  D  L  L  T  L  C  N  I  L  *  K  E  *  F  K  C  N  I  I  I  L  Y  M  F  F  F  F  W  G  C  M  R  P  *  R  G  T  K  L  E  D  I  G  F  I  L  F  V  N  L  L  V  V  V  T  V  K  S  L  N  *  R  *  C  *  L  *  L  Y  C  N  L  I  N   </first_frame>
            <second_frame>  N  E  I  G  V  *  I  T  K  R  R  V  G  K  S  R  K  S  D  W  L  W  L  Q  S  K  P  K  E  G  I  F  H  S  G  F  I  V  S  T  *  N  F  L  Q  N  R  R  I  W  K  S  T  L  P  N  F  S  I  K  W  *  Y  F  S  T  S  K  S  W  T  K  C  I  Q  I  S  T  S  K  S  T  *  D  T  K  S  L  L  H  W  S  N  N  A  K  *  F  I  N  S  W  I  *  R  Q  Q  R  T  F  L  N  G  *  N  *  C  T  M  A  *  *  K  *  Y  K  K  *  *  Q  Y  C  *  *  F  K  T  S  I  R  L  *  F  G  V  *  R  *  F  I  *  N  C  F  R  *  L  *  *  L  F  K  I  S  *  P  F  V  T  Y  Y  K  K  N  N  S  N  V  T  L  *  F  C  T  C  F  F  F  F  G  V  V  *  D  H  E  G  A  L  N  *  K  I  L  V  L  F  Y  L  L  I  C  *  L  L  *  L  L  S  H  *  I  K  D  D  V  D  Y  N  C  I  V  I  *  L  M  </second_frame>
            <third_frame>   M  K  L  V  F  E  S  Q  R  G  E  W  G  K  A  E  R  V  I  G  C  G  Y  N  P  S  Q  K  K  V  F  F  T  V  D  S  L  L  V  H  E  I  F  C  K  T  E  E  F  G  N  P  L  Y  P  I  L  A  S  N  G  D  I  L  V  L  V  N  L  G  Q  S  V  F  K  Y  Q  P  A  N  L  H  R  T  P  N  P  C  F  I  G  P  I  M  Q  N  D  S  S  I  L  G  Y  E  D  S  K  E  L  F  S  M  G  R  I  D  A  Q  W  L  N  R  S  N  T  R  S  N  N  N  T  V  N  S  L  K  Q  V  L  D  Y  D  L  E  S  E  G  D  L  F  E  I  V  L  D  N  C  N  S  Y  S  R  S  P  N  P  L  *  H  I  I  K  R  I  I  Q  M  *  H  Y  N  F  V  H  V  F  F  F  L  G  L  Y  E  T  M  K  G  H  *  I  R  R  Y  W  F  Y  F  I  C  *  F  V  S  C  C  N  C  *  V  T  K  L  K  M  M  L  I  I  I  V  L  *  F  D  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2005" stop="2508"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKLVFESQRGEWGKAERVIGCGYNPSQKKVFFTVDSLLVHEIFCKTEEFGNPLYPILASNGDILVLVNLGQSVFKYQPANLHRTPNPCFIGPIMQNDSSILGYEDSKELFSMGRIDAQWLNRSNTRSNNNTVNSLKQVLDYDLESEGDLFEIVLDNCNSYSRSPNPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="29579" PGL_stop="31182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29579" e_stop="29637"/>
            <exon e_start="30139" e_stop="30232"/>
            <exon e_start="30402" e_stop="30433"/>
            <exon e_start="30524" e_stop="30621"/>
            <exon e_start="30724" e_stop="30822"/>
            <exon e_start="30970" e_stop="31182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="0.969"/>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="0.989"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29579" e_stop="29637" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.995">
            <gDNA_intron_boundary i_start="29638" i_stop="30138" i_length="501"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="30139" e_stop="30232" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30233" i_stop="30401" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="0.969">
            <gDNA_exon_boundary e_start="30402" e_stop="30433" e_length="32"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="30434" i_stop="30523" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30524" e_stop="30621" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="30622" i_stop="30723" i_length="102"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="30724" e_stop="30822" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30823" i_stop="30969" i_length="147"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="30970" e_stop="31182" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29579" stop="29637"/>
              <exon start="30139" stop="30232"/>
              <exon start="30402" stop="30433"/>
              <exon start="30524" stop="30621"/>
              <exon start="30724" stop="30822"/>
              <exon start="30970" stop="31094"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30734" stop="30822"/>
              <exon start="30970" stop="31182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327208" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGAAGGAATGAGTATGAGAGACATAAATTGCTAGCTTTAAATCAACGACAAAAGATG : GTTCTTCAAAGAAAGACGGAGGAGGCTGCTATGGCAACCAAGAGACTAAAAGAATTGCTAGAAGCGCGTAAATCTTCTGGTCGCGAGAACTCAG : TTACTAGCAACGGCCATGTAGCAAATGGACAG : AGCAATGAGAAATCGTTGCAACGTTGGCTTGATCATGAGCTTGAAGTGATGGTGAATGTTCATGAAGTTCGTCATGAGTATGAGAAGCAAAGTCAAGT : ACGAGCCGCACTTGGTGAAGAGCTAGCAGTTTTGAAACAAGTTGATGAATTTGCTTCAAAAGGACTGAGTCCTCCAAGGGGTAAAAATGGCTTCTCTAG : GGCATCTTCAATGTCGCCAAATGCTAGAATGGCACGAATTGCTTCTCTAGAGAATATGTTAGGCATTTCATCCAATTCTCTAGTTGCAATGGCTTCACAACTTTCAGAAGCAGAAGAACGAGAGCGAGCTTTTAGCAATCGTGGGCGTTGGAACCAACTACGCTCGATGGGGGATGCAAAAAGTTTGCTCCAATATATGTTCAATTCTCTTGC</gDNA_template>
            <first_frame> E  E  G  M  S  M  R  D  I  N  C  *  L  *  I  N  D  K  R  W :   F  F  K  E  R  R  R  R  L  L  W  Q  P  R  D  *  K  N  C  *  K  R  V  N  L  L  V  A  R  T  Q  :  L  L  A  T  A  M  *  Q  M  D  R :   A  M  R  N  R  C  N  V  G  L  I  M  S  L  K  *  W  *  M  F  M  K  F  V  M  S  M  R  S  K  V  K   : Y  E  P  H  L  V  K  S  *  Q  F  *  N  K  L  M  N  L  L  Q  K  D  *  V  L  Q  G  V  K  M  A  S  L   : G  H  L  Q  C  R  Q  M  L  E  W  H  E  L  L  L  *  R  I  C  *  A  F  H  P  I  L  *  L  Q  W  L  H  N  F  Q  K  Q  K  N  E  S  E  L  L  A  I  V  G  V  G  T  N  Y  A  R  W  G  M  Q  K  V  C  S  N  I  C  S  I  L  L  </first_frame>
            <second_frame>  K  K  E  *  V  *  E  T  *  I  A  S  F  K  S  T  T  K  D   : G  S  S  K  K  D  G  G  G  C  Y  G  N  Q  E  T  K  R  I  A  R  S  A  *  I  F  W  S  R  E  L  S :   Y  *  Q  R  P  C  S  K  W  T   : E  Q  *  E  I  V  A  T  L  A  *  S  *  A  *  S  D  G  E  C  S  *  S  S  S  *  V  *  E  A  K  S  S  :  T  S  R  T  W  *  R  A  S  S  F  E  T  S  *  *  I  C  F  K  R  T  E  S  S  K  G  *  K  W  L  L  *  :  G  I  F  N  V  A  K  C  *  N  G  T  N  C  F  S  R  E  Y  V  R  H  F  I  Q  F  S  S  C  N  G  F  T  T  F  R  S  R  R  T  R  A  S  F  *  Q  S  W  A  L  E  P  T  T  L  D  G  G  C  K  K  F  A  P  I  Y  V  Q  F  S  C </second_frame>
            <third_frame>   R  R  N  E  Y  E  R  H  K  L  L  A  L  N  Q  R  Q  K  M  :  V  L  Q  R  K  T  E  E  A  A  M  A  T  K  R  L  K  E  L  L  E  A  R  K  S  S  G  R  E  N  S   : V  T  S  N  G  H  V  A  N  G  Q  :  S  N  E  K  S  L  Q  R  W  L  D  H  E  L  E  V  M  V  N  V  H  E  V  R  H  E  Y  E  K  Q  S  Q  V :   R  A  A  L  G  E  E  L  A  V  L  K  Q  V  D  E  F  A  S  K  G  L  S  P  P  R  G  K  N  G  F  S  R :   A  S  S  M  S  P  N  A  R  M  A  R  I  A  S  L  E  N  M  L  G  I  S  S  N  S  L  V  A  M  A  S  Q  L  S  E  A  E  E  R  E  R  A  F  S  N  R  G  R  W  N  Q  L  R  S  M  G  D  A  K  S  L  L  Q  Y  M  F  N  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29581" stop="29637"/>
                    <exon start="30139" stop="30232"/>
                    <exon start="30402" stop="30433"/>
                    <exon start="30524" stop="30621"/>
                    <exon start="30724" stop="30822"/>
                    <exon start="30970" stop="31180"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNEYERHKLLALNQRQKMVLQRKTEEAAMATKRLKELLEARKSSGRENSVTSNGHVANGQSNEKSLQRWLDHELEVMVNVHEVRHEYEKQSQVRAALGEELAVLKQVDEFASKGLSPPRGKNGFSRASSMSPNARMARIASLENMLGISSNSLVAMASQLSEAEERERAFSNRGRWNQLRSMGDAKSLLQYMFNSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="37618" PGL_stop="33452"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37618" e_stop="37222"/>
            <exon e_start="34271" e_stop="33643"/>
            <exon e_start="33460" e_stop="33452"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.680" e_score="0.998"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37618" e_stop="37222" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37221" i_stop="34272" i_length="2950"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="34271" e_stop="33643" e_length="629"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.680">
            <gDNA_intron_boundary i_start="33642" i_stop="33461" i_length="182"/>
          </intron>
          <exon e_serial="3" e_score="0.667">
            <gDNA_exon_boundary e_start="33460" e_stop="33452" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37618" stop="37250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37595" stop="37222"/>
              <exon start="34271" stop="33901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37594" stop="37222"/>
              <exon start="34271" stop="34210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37590" stop="37222"/>
              <exon start="34271" stop="33802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37588" stop="37222"/>
              <exon start="34271" stop="34152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37587" stop="37222"/>
              <exon start="34271" stop="34110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37585" stop="37222"/>
              <exon start="34271" stop="34027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37564" stop="37222"/>
              <exon start="34271" stop="33928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37546" stop="37222"/>
              <exon start="34271" stop="34051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37544" stop="37222"/>
              <exon start="34271" stop="34206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37503" stop="37222"/>
              <exon start="34271" stop="34002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37494" stop="37222"/>
              <exon start="34271" stop="34079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37488" stop="37222"/>
              <exon start="34271" stop="33969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37474" stop="37222"/>
              <exon start="34271" stop="34041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37457" stop="37252"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37310" stop="37222"/>
              <exon start="34271" stop="33643"/>
              <exon start="33460" stop="33452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37305" stop="37222"/>
              <exon start="34271" stop="33984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325147" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAATTGAATGTTGAGGGTGGGAAGGGGCAAATATTCCAGAAACTGCTAGAAATATCTGGTGGTCTCTTCGCCATTTCTCTATTATCTTCATCTCTCTGTAAAAACTCCAATCAAATACTAACCCTTGAGTAGAACAAGAGTAAGAAATAGGAAAACTCCGGCGACGAAAGTAACAGATCGCAACTGTAACGGAAATGCCATGGACGATGTAGATGCTGACATGATGGAGGCGGAGTCCACGGTGTCAGTGGATCCACCGGTACCGCCACTGCCACCGTCACCGTCACCGTCACTATTGCATTCAAGTTCAGACCAGGATGGCGCCATTAGAGGGATGCTCACTGTGGCTCGTCAGCTTATCGATCAAGGCAGGCCTTCTCAAGCTCTTCAAGCG : GTGGTGACGGCCATGAGAACCAGAGGTGGTGAGCAGGCCGTAATTCAAGCCCTTAATCGTGCCCAGGAGCTGTACAGAAATAAAGTACAGGCAAGTGTGGCTGCAGATGAGCTGGCTTCTTTGTTTGCTGAGTGTGCCATTGCTGAGGCCATCCCTACTATATCCCAACCTTCTGAACATAATACAGTGGATAAACCAATTGAAGTAGACGCTGATGGAACTTCAATACTATCTGAAACTGGCAGGAAACAGATAATGTTTGATGCATTCTCTGACGGAAGCAGCTTTGTTTGCCTACAATGTGGTGGTCTGGTTAGCACCCATCGCAAAGATGAACACTACTCATTCTGGTGTTGCAAAAATTGAGTTAGCTTTCAACTTGAATGTATTTTAGCCAGTGGGTTTCTCTAGTATTTGCTCTTGGCTCCAGATCAATGCTCTAACTAGGCATGTTGCTGTAAGCATTACATGGTAGCTGGAGTAATGATTGCACAGGTCGCACTGAAAGTTGTATGGCTATAGATATTGACAACAAAAATGTATTCAGTTTCTTGGAGTATGTTGTGCACTCTGTACTATTCAAGATGTTTTGAAATAATTGAAGCATATATCCTTATAGTGAGCTTGTA : GTAAACAAA</gDNA_template>
            <first_frame> K  K  L  N  V  E  G  G  K  G  Q  I  F  Q  K  L  L  E  I  S  G  G  L  F  A  I  S  L  L  S  S  S  L  C  K  N  S  N  Q  I  L  T  L  E  *  N  K  S  K  K  *  E  N  S  G  D  E  S  N  R  S  Q  L  *  R  K  C  H  G  R  C  R  C  *  H  D  G  G  G  V  H  G  V  S  G  S  T  G  T  A  T  A  T  V  T  V  T  V  T  I  A  F  K  F  R  P  G  W  R  H  *  R  D  A  H  C  G  S  S  A  Y  R  S  R  Q  A  F  S  S  S  S  S   : G  G  D  G  H  E  N  Q  R  W  *  A  G  R  N  S  S  P  *  S  C  P  G  A  V  Q  K  *  S  T  G  K  C  G  C  R  *  A  G  F  F  V  C  *  V  C  H  C  *  G  H  P  Y  Y  I  P  T  F  *  T  *  Y  S  G  *  T  N  *  S  R  R  *  W  N  F  N  T  I  *  N  W  Q  E  T  D  N  V  *  C  I  L  *  R  K  Q  L  C  L  P  T  M  W  W  S  G  *  H  P  S  Q  R  *  T  L  L  I  L  V  L  Q  K  L  S  *  L  S  T  *  M  Y  F  S  Q  W  V  S  L  V  F  A  L  G  S  R  S  M  L  *  L  G  M  L  L  *  A  L  H  G  S  W  S  N  D  C  T  G  R  T  E  S  C  M  A  I  D  I  D  N  K  N  V  F  S  F  L  E  Y  V  V  H  S  V  L  F  K  M  F  *  N  N  *  S  I  Y  P  Y  S  E  L  V  :  V  N  K </first_frame>
            <second_frame>  K  N  *  M  L  R  V  G  R  G  K  Y  S  R  N  C  *  K  Y  L  V  V  S  S  P  F  L  Y  Y  L  H  L  S  V  K  T  P  I  K  Y  *  P  L  S  R  T  R  V  R  N  R  K  T  P  A  T  K  V  T  D  R  N  C  N  G  N  A  M  D  D  V  D  A  D  M  M  E  A  E  S  T  V  S  V  D  P  P  V  P  P  L  P  P  S  P  S  P  S  L  L  H  S  S  S  D  Q  D  G  A  I  R  G  M  L  T  V  A  R  Q  L  I  D  Q  G  R  P  S  Q  A  L  Q  A  :  V  V  T  A  M  R  T  R  G  G  E  Q  A  V  I  Q  A  L  N  R  A  Q  E  L  Y  R  N  K  V  Q  A  S  V  A  A  D  E  L  A  S  L  F  A  E  C  A  I  A  E  A  I  P  T  I  S  Q  P  S  E  H  N  T  V  D  K  P  I  E  V  D  A  D  G  T  S  I  L  S  E  T  G  R  K  Q  I  M  F  D  A  F  S  D  G  S  S  F  V  C  L  Q  C  G  G  L  V  S  T  H  R  K  D  E  H  Y  S  F  W  C  C  K  N  *  V  S  F  Q  L  E  C  I  L  A  S  G  F  L  *  Y  L  L  L  A  P  D  Q  C  S  N  *  A  C  C  C  K  H  Y  M  V  A  G  V  M  I  A  Q  V  A  L  K  V  V  W  L  *  I  L  T  T  K  M  Y  S  V  S  W  S  M  L  C  T  L  Y  Y  S  R  C  F  E  I  I  E  A  Y  I  L  I  V  S  L  * :   *  T   </second_frame>
            <third_frame>   K  I  E  C  *  G  W  E  G  A  N  I  P  E  T  A  R  N  I  W  W  S  L  R  H  F  S  I  I  F  I  S  L  *  K  L  Q  S  N  T  N  P  *  V  E  Q  E  *  E  I  G  K  L  R  R  R  K  *  Q  I  A  T  V  T  E  M  P  W  T  M  *  M  L  T  *  W  R  R  S  P  R  C  Q  W  I  H  R  Y  R  H  C  H  R  H  R  H  R  H  Y  C  I  Q  V  Q  T  R  M  A  P  L  E  G  C  S  L  W  L  V  S  L  S  I  K  A  G  L  L  K  L  F  K  R :   W  *  R  P  *  E  P  E  V  V  S  R  P  *  F  K  P  L  I  V  P  R  S  C  T  E  I  K  Y  R  Q  V  W  L  Q  M  S  W  L  L  C  L  L  S  V  P  L  L  R  P  S  L  L  Y  P  N  L  L  N  I  I  Q  W  I  N  Q  L  K  *  T  L  M  E  L  Q  Y  Y  L  K  L  A  G  N  R  *  C  L  M  H  S  L  T  E  A  A  L  F  A  Y  N  V  V  V  W  L  A  P  I  A  K  M  N  T  T  H  S  G  V  A  K  I  E  L  A  F  N  L  N  V  F  *  P  V  G  F  S  S  I  C  S  W  L  Q  I  N  A  L  T  R  H  V  A  V  S  I  T  W  *  L  E  *  *  L  H  R  S  H  *  K  L  Y  G  Y  R  Y  *  Q  Q  K  C  I  Q  F  L  G  V  C  C  A  L  C  T  I  Q  D  V  L  K  *  L  K  H  I  S  L  *  *  A  C   : S  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37494" stop="37222"/>
                    <exon start="34271" stop="33906"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSRTRVRNRKTPATKVTDRNCNGNAMDDVDADMMEAESTVSVDPPVPPLPPSPSPSLLHSSSDQDGAIRGMLTVARQLIDQGRPSQALQAVVTAMRTRGGEQAVIQALNRAQELYRNKVQASVAADELASLFAECAIAEAIPTISQPSEHNTVDKPIEVDADGTSILSETGRKQIMFDAFSDGSSFVCLQCGGLVSTHRKDEHYSFWCCKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="41152" PGL_stop="39858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41152" e_stop="40733"/>
            <exon e_start="40244" e_stop="39858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.109" e_score="0.983"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="41152" e_stop="40733" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.109">
            <gDNA_intron_boundary i_start="40732" i_stop="40245" i_length="488"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="40244" e_stop="39858" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41152" stop="40733"/>
              <exon start="40244" stop="39858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAGCAGTATTGAGGATTGAAGAAGATAACAATGAACTGGAAGAGAAGGTGAAAAGAGTACAACAAGGAATGCAGCAAGTGATGGGTAAAAGTGGGAGCTTAGTATTCTGTGCAGGTGAGGTGCAGGTGTATACCCTGGAACAGCTGATGAGAGCTTCTGCTGAGCTTTTAGGTAGAGGAACTATGGGGACTACTTACAAAGCAGTGCTTGATAACCGTCTGATTGTGTGTGTGAAGAGATTGGACGGTGGGAGATTGGCCGGTACAAGTCAAGAAGAGTTTGAGCAGCATATGGAATCAGTAGGCGGGCTTAGGCACCCGAATTTGGTTCCTTTTCGGGCTTATTTTCAGGCCCGACAAGAAAGGCTTTTGGTCTATGATTATCAACCCAATGGCAGCCTGTTTTCTCTTATTCATG : GTTCCAAGTCATCAAGAGCAAAGCCACTTCACTGGACTTCATGTTTGAAAATAGCAGAGGATGTAGCTCAAGGACTTTCCTACATCCACCAAGCATGGAGGCTTGTCCATGGCAATCTCAAGTCCTCTAACGTCCTCCTCGGCTCCGATTTCGAGGCGTGCATAACCGACTACTGTCTCTCCGTCCTAGCTGTCCCCTCGGACGATGAGAATCCTGATTCTGTAGCCTATCAGGCTCCAGAAATTCGTAAGCTGAATCACAACAACCACAACTACCACCGCCAAGCTAGTGCCAAGGCTGATGTCTATTCGTTTGGGGTTCTTTTGCTTGAACTTCTAACGGGGAAGCATCCTTCGGAACATCCATATCTAATGCCAGATGATATGA</gDNA_template>
            <first_frame> Q  K  Q  Y  *  G  L  K  K  I  T  M  N  W  K  R  R  *  K  E  Y  N  K  E  C  S  K  *  W  V  K  V  G  A  *  Y  S  V  Q  V  R  C  R  C  I  P  W  N  S  *  *  E  L  L  L  S  F  *  V  E  E  L  W  G  L  L  T  K  Q  C  L  I  T  V  *  L  C  V  *  R  D  W  T  V  G  D  W  P  V  Q  V  K  K  S  L  S  S  I  W  N  Q  *  A  G  L  G  T  R  I  W  F  L  F  G  L  I  F  R  P  D  K  K  G  F  W  S  M  I  I  N  P  M  A  A  C  F  L  L  F  M  :  V  P  S  H  Q  E  Q  S  H  F  T  G  L  H  V  *  K  *  Q  R  M  *  L  K  D  F  P  T  S  T  K  H  G  G  L  S  M  A  I  S  S  P  L  T  S  S  S  A  P  I  S  R  R  A  *  P  T  T  V  S  P  S  *  L  S  P  R  T  M  R  I  L  I  L  *  P  I  R  L  Q  K  F  V  S  *  I  T  T  T  T  T  T  T  A  K  L  V  P  R  L  M  S  I  R  L  G  F  F  C  L  N  F  *  R  G  S  I  L  R  N  I  H  I  *  C  Q  M  I  * </first_frame>
            <second_frame>  R  S  S  I  E  D  *  R  R  *  Q  *  T  G  R  E  G  E  K  S  T  T  R  N  A  A  S  D  G  *  K  W  E  L  S  I  L  C  R  *  G  A  G  V  Y  P  G  T  A  D  E  S  F  C  *  A  F  R  *  R  N  Y  G  D  Y  L  Q  S  S  A  *  *  P  S  D  C  V  C  E  E  I  G  R  W  E  I  G  R  Y  K  S  R  R  V  *  A  A  Y  G  I  S  R  R  A  *  A  P  E  F  G  S  F  S  G  L  F  S  G  P  T  R  K  A  F  G  L  *  L  S  T  Q  W  Q  P  V  F  S  Y  S  W :   F  Q  V  I  K  S  K  A  T  S  L  D  F  M  F  E  N  S  R  G  C  S  S  R  T  F  L  H  P  P  S  M  E  A  C  P  W  Q  S  Q  V  L  *  R  P  P  R  L  R  F  R  G  V  H  N  R  L  L  S  L  R  P  S  C  P  L  G  R  *  E  S  *  F  C  S  L  S  G  S  R  N  S  *  A  E  S  Q  Q  P  Q  L  P  P  P  S  *  C  Q  G  *  C  L  F  V  W  G  S  F  A  *  T  S  N  G  E  A  S  F  G  T  S  I  S  N  A  R  *  Y   </second_frame>
            <third_frame>   E  A  V  L  R  I  E  E  D  N  N  E  L  E  E  K  V  K  R  V  Q  Q  G  M  Q  Q  V  M  G  K  S  G  S  L  V  F  C  A  G  E  V  Q  V  Y  T  L  E  Q  L  M  R  A  S  A  E  L  L  G  R  G  T  M  G  T  T  Y  K  A  V  L  D  N  R  L  I  V  C  V  K  R  L  D  G  G  R  L  A  G  T  S  Q  E  E  F  E  Q  H  M  E  S  V  G  G  L  R  H  P  N  L  V  P  F  R  A  Y  F  Q  A  R  Q  E  R  L  L  V  Y  D  Y  Q  P  N  G  S  L  F  S  L  I  H   : G  S  K  S  S  R  A  K  P  L  H  W  T  S  C  L  K  I  A  E  D  V  A  Q  G  L  S  Y  I  H  Q  A  W  R  L  V  H  G  N  L  K  S  S  N  V  L  L  G  S  D  F  E  A  C  I  T  D  Y  C  L  S  V  L  A  V  P  S  D  D  E  N  P  D  S  V  A  Y  Q  A  P  E  I  R  K  L  N  H  N  N  H  N  Y  H  R  Q  A  S  A  K  A  D  V  Y  S  F  G  V  L  L  L  E  L  L  T  G  K  H  P  S  E  H  P  Y  L  M  P  D  D  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41150" stop="40733"/>
                    <exon start="40244" stop="39859"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAVLRIEEDNNELEEKVKRVQQGMQQVMGKSGSLVFCAGEVQVYTLEQLMRASAELLGRGTMGTTYKAVLDNRLIVCVKRLDGGRLAGTSQEEFEQHMESVGGLRHPNLVPFRAYFQARQERLLVYDYQPNGSLFSLIHGSKSSRAKPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLKSSNVLLGSDFEACITDYCLSVLAVPSDDENPDSVAYQAPEIRKLNHNNHNYHRQASAKADVYSFGVLLLELLTGKHPSEHPYLMPDDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="48063" PGL_stop="44089"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48063" e_stop="47842"/>
            <exon e_start="45922" e_stop="45750"/>
            <exon e_start="44836" e_stop="44775"/>
            <exon e_start="44573" e_stop="44561"/>
            <exon e_start="44464" e_stop="44433"/>
            <exon e_start="44158" e_stop="44089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-intron don_prob="0.000" acc_prob="0.976" e_score="0.903"/>
          <exon-intron don_prob="0.000" acc_prob="0.943" e_score="0.769"/>
          <exon-intron don_prob="0.799" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.886"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="48063" e_stop="47842" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47841" i_stop="45923" i_length="1919"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="45922" e_stop="45750" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45749" i_stop="44837" i_length="913"/>
          </intron>
          <exon e_serial="3" e_score="0.903">
            <gDNA_exon_boundary e_start="44836" e_stop="44775" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="44774" i_stop="44574" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="0.769">
            <gDNA_exon_boundary e_start="44573" e_stop="44561" e_length="13"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="44560" i_stop="44465" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="0.625">
            <gDNA_exon_boundary e_start="44464" e_stop="44433" e_length="32"/>
          </exon>
          <intron i_serial="5" don_prob="0.799" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44432" i_stop="44159" i_length="274"/>
          </intron>
          <exon e_serial="6" e_score="0.886">
            <gDNA_exon_boundary e_start="44158" e_stop="44089" e_length="70"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48063" stop="47842"/>
              <exon start="45922" stop="45750"/>
              <exon start="44836" stop="44775"/>
              <exon start="44573" stop="44561"/>
              <exon start="44464" stop="44433"/>
              <exon start="44158" stop="44089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272124" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTCTAAAATTTAATTGAACTTCTTTTTCCACAGAGAAAATGAGAACAATGTTGATCCATATAGTGATGTAAATGCTGAAATTAGTGAAGAAAGTTCGGAGGAAGATGAACCTTCAAAAGATGATGGTGAAAGTGAATCAGATGAAGATATCAATAATACTAGAGATTTTTCTCAAAATGACATTGGTATAAATCTTCCTAATCAATTTGAAAAGGATGT : CATCTAGCAGCATGTGGACCCCTTGGTAAACCAACAGGGAAAATATTCCTTGTATCTCTTTTTGCTACAATCTGAGGCGTAAGAACGATAACTCTCTCCCATGCCCAAATCTAGACATAATAGATAATTATAAACTAGATAAAATTTCAATAAATACTAAGTGTAATTATTGA : CACAACAGTTTACTGCTTTCACTTACCAAAGATTTGGTAAGAGTGGCAGGGGTTAACCTATA : GCACAGATTAAAA : ACAAAACGTTGACCAAAGCAGAGACTCTATTT : GGTGGTTGCCTAAAGGAAAATAACAAATTCATCAACTATAAGATAAACTAAATCAATGTATGACAAAATT</gDNA_template>
            <first_frame> I  F  *  N  L  I  E  L  L  F  P  Q  R  K  *  E  Q  C  *  S  I  *  *  C  K  C  *  N  *  *  R  K  F  G  G  R  *  T  F  K  R  *  W  *  K  *  I  R  *  R  Y  Q  *  Y  *  R  F  F  S  K  *  H  W  Y  K  S  S  *  S  I  *  K  G  C  :  H  L  A  A  C  G  P  L  G  K  P  T  G  K  I  F  L  V  S  L  F  A  T  I  *  G  V  R  T  I  T  L  S  H  A  Q  I  *  T  *  *  I  I  I  N  *  I  K  F  Q  *  I  L  S  V  I  I  D :   T  T  V  Y  C  F  H  L  P  K  I  W  *  E  W  Q  G  L  T  Y   : S  T  D  *  K :   Q  N  V  D  Q  S  R  D  S  I   : W  W  L  P  K  G  K  *  Q  I  H  Q  L  *  D  K  L  N  Q  C  M  T  K   </first_frame>
            <second_frame>  F  S  K  I  *  L  N  F  F  F  H  R  E  N  E  N  N  V  D  P  Y  S  D  V  N  A  E  I  S  E  E  S  S  E  E  D  E  P  S  K  D  D  G  E  S  E  S  D  E  D  I  N  N  T  R  D  F  S  Q  N  D  I  G  I  N  L  P  N  Q  F  E  K  D  V :   I  *  Q  H  V  D  P  L  V  N  Q  Q  G  K  Y  S  L  Y  L  F  L  L  Q  S  E  A  *  E  R  *  L  S  P  M  P  K  S  R  H  N  R  *  L  *  T  R  *  N  F  N  K  Y  *  V  *  L  L   : T  Q  Q  F  T  A  F  T  Y  Q  R  F  G  K  S  G  R  G  *  P  I  :  A  Q  I  K   : N  K  T  L  T  K  A  E  T  L  F  :  G  G  C  L  K  E  N  N  K  F  I  N  Y  K  I  N  *  I  N  V  *  Q  N  </second_frame>
            <third_frame>   F  L  K  F  N  *  T  S  F  S  T  E  K  M  R  T  M  L  I  H  I  V  M  *  M  L  K  L  V  K  K  V  R  R  K  M  N  L  Q  K  M  M  V  K  V  N  Q  M  K  I  S  I  I  L  E  I  F  L  K  M  T  L  V  *  I  F  L  I  N  L  K  R  M   : S  S  S  S  M  W  T  P  W  *  T  N  R  E  N  I  P  C  I  S  F  C  Y  N  L  R  R  K  N  D  N  S  L  P  C  P  N  L  D  I  I  D  N  Y  K  L  D  K  I  S  I  N  T  K  C  N  Y  *  :  H  N  S  L  L  L  S  L  T  K  D  L  V  R  V  A  G  V  N  L  * :   H  R  L  K  :  T  K  R  *  P  K  Q  R  L  Y  L :   V  V  A  *  R  K  I  T  N  S  S  T  I  R  *  T  K  S  M  Y  D  K  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48047" stop="47842"/>
                    <exon start="45922" stop="45916"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNFFFHRENENNVDPYSDVNAEISEESSEEDEPSKDDGESESDEDINNTRDFSQNDIGINLPNQFEKDVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="57967" PGL_stop="56852"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57967" e_stop="57063"/>
            <exon e_start="56956" e_stop="56852"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.924" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57967" e_stop="57063" e_length="905"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.924">
            <gDNA_intron_boundary i_start="57062" i_stop="56957" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56956" e_stop="56852" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57967" stop="57297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57873" stop="57133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57873" stop="57329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57872" stop="57263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57872" stop="57278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57872" stop="57339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57868" stop="57331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57851" stop="57557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57833" stop="57219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57833" stop="57310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57823" stop="57337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57819" stop="57299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57819" stop="57510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57819" stop="57656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57813" stop="57309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57803" stop="57063"/>
              <exon start="56956" stop="56901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57803" stop="57301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57728" stop="57126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57490" stop="57063"/>
              <exon start="56956" stop="56852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATTAGAATAAGAATTTCCTCCCATTTTTCTCTCTCATTTTTATTTCTATATCTTCATTAGCTTCTACCCCTCTCTTCACTCTTTACAATTTCCTTCTTCTTCTTCTTCTTCTCTCTGTTCTATGGTATTGTAAACATGGCTGTAGACTTAATGACCAGTGGTTACAGAACCGATAATTTTTCATCAAAAATGGAGGAAACCGCCGTACAAGAAGCTGCAACCGCCGGACTTCAAAGCGTTGAGAAATTAATCAGATTGTTGTCTAAATCTCATCAAAATCAACAACAACAACAAACGAATTTTCAGGATTCGTCATCGGGTAATTCCTCTGTTTCTGCAGATTATCAAGCTGTAGCTGATGCTGCTGTAAACAAATTCAAAAAGTTCATTTCTTTACTTGATAAAAACAGAACTGGTCATGCTAGATTCCGGCGAGGACCAATTAGTTCTCTTTCTCCTCCACTTCCATCAAAGCCACAACAATTACAACAATCCATTAAGAATCAAAACCCCCAAATTGAAGAAATCGAAAAACCCCAAGCTTCAAATACCAAAATCTACTGTCCGACCCCAATTCAAAGATTGCCTCCTTTACCTCATAACCATCTTCAATTAGTGAAAAATGGGTCGATTGAAAGGAAAGAAGCATCAACTACCATTAATTTTGCTTCTCCATCGCCGGCGACTTCGTTTATGTCATCGTTAACAGGGGAAACAGAGAGCTTACAGCAGTCTTTATCTTCTGGGTTTCAAATAACAAATCTTTCTCAGGTTTCATCCGCCGGCCGTCCACCTCTTTCTACTTCTTCATTCAAAAGGAAGTGTAGTTCCATGGACGATACCGCCCTCAAGTGCAGCAGCGCCGGTGGTTCCTCTGGCCGTTGCCACTGCCCAAAGAAAAG : AAAATCAAGAGTCAAAAGAGTAGTAAGAGTCCCTGCTATTAGCATGAAAATGGCTGATATTCCACCTGATGATTATTCATGGAGAAAATATGGTCAAAAACCCAT</gDNA_template>
            <first_frame> L  I  R  I  R  I  S  S  H  F  S  L  S  F  L  F  L  Y  L  H  *  L  L  P  L  S  S  L  F  T  I  S  F  F  F  F  F  F  S  L  F  Y  G  I  V  N  M  A  V  D  L  M  T  S  G  Y  R  T  D  N  F  S  S  K  M  E  E  T  A  V  Q  E  A  A  T  A  G  L  Q  S  V  E  K  L  I  R  L  L  S  K  S  H  Q  N  Q  Q  Q  Q  Q  T  N  F  Q  D  S  S  S  G  N  S  S  V  S  A  D  Y  Q  A  V  A  D  A  A  V  N  K  F  K  K  F  I  S  L  L  D  K  N  R  T  G  H  A  R  F  R  R  G  P  I  S  S  L  S  P  P  L  P  S  K  P  Q  Q  L  Q  Q  S  I  K  N  Q  N  P  Q  I  E  E  I  E  K  P  Q  A  S  N  T  K  I  Y  C  P  T  P  I  Q  R  L  P  P  L  P  H  N  H  L  Q  L  V  K  N  G  S  I  E  R  K  E  A  S  T  T  I  N  F  A  S  P  S  P  A  T  S  F  M  S  S  L  T  G  E  T  E  S  L  Q  Q  S  L  S  S  G  F  Q  I  T  N  L  S  Q  V  S  S  A  G  R  P  P  L  S  T  S  S  F  K  R  K  C  S  S  M  D  D  T  A  L  K  C  S  S  A  G  G  S  S  G  R  C  H  C  P  K  K  R :   K  S  R  V  K  R  V  V  R  V  P  A  I  S  M  K  M  A  D  I  P  P  D  D  Y  S  W  R  K  Y  G  Q  K  P   </first_frame>
            <second_frame>  *  L  E  *  E  F  P  P  I  F  L  S  H  F  Y  F  Y  I  F  I  S  F  Y  P  S  L  H  S  L  Q  F  P  S  S  S  S  S  S  L  C  S  M  V  L  *  T  W  L  *  T  *  *  P  V  V  T  E  P  I  I  F  H  Q  K  W  R  K  P  P  Y  K  K  L  Q  P  P  D  F  K  A  L  R  N  *  S  D  C  C  L  N  L  I  K  I  N  N  N  N  K  R  I  F  R  I  R  H  R  V  I  P  L  F  L  Q  I  I  K  L  *  L  M  L  L  *  T  N  S  K  S  S  F  L  Y  L  I  K  T  E  L  V  M  L  D  S  G  E  D  Q  L  V  L  F  L  L  H  F  H  Q  S  H  N  N  Y  N  N  P  L  R  I  K  T  P  K  L  K  K  S  K  N  P  K  L  Q  I  P  K  S  T  V  R  P  Q  F  K  D  C  L  L  Y  L  I  T  I  F  N  *  *  K  M  G  R  L  K  G  K  K  H  Q  L  P  L  I  L  L  L  H  R  R  R  L  R  L  C  H  R  *  Q  G  K  Q  R  A  Y  S  S  L  Y  L  L  G  F  K  *  Q  I  F  L  R  F  H  P  P  A  V  H  L  F  L  L  L  H  S  K  G  S  V  V  P  W  T  I  P  P  S  S  A  A  A  P  V  V  P  L  A  V  A  T  A  Q  R  K   : E  N  Q  E  S  K  E  *  *  E  S  L  L  L  A  *  K  W  L  I  F  H  L  M  I  I  H  G  E  N  M  V  K  N  P  </second_frame>
            <third_frame>   D  *  N  K  N  F  L  P  F  F  S  L  I  F  I  S  I  S  S  L  A  S  T  P  L  F  T  L  Y  N  F  L  L  L  L  L  L  L  S  V  L  W  Y  C  K  H  G  C  R  L  N  D  Q  W  L  Q  N  R  *  F  F  I  K  N  G  G  N  R  R  T  R  S  C  N  R  R  T  S  K  R  *  E  I  N  Q  I  V  V  *  I  S  S  K  S  T  T  T  T  N  E  F  S  G  F  V  I  G  *  F  L  C  F  C  R  L  S  S  C  S  *  C  C  C  K  Q  I  Q  K  V  H  F  F  T  *  *  K  Q  N  W  S  C  *  I  P  A  R  T  N  *  F  S  F  S  S  T  S  I  K  A  T  T  I  T  T  I  H  *  E  S  K  P  P  N  *  R  N  R  K  T  P  S  F  K  Y  Q  N  L  L  S  D  P  N  S  K  I  A  S  F  T  S  *  P  S  S  I  S  E  K  W  V  D  *  K  E  R  S  I  N  Y  H  *  F  C  F  S  I  A  G  D  F  V  Y  V  I  V  N  R  G  N  R  E  L  T  A  V  F  I  F  W  V  S  N  N  K  S  F  S  G  F  I  R  R  P  S  T  S  F  Y  F  F  I  Q  K  E  V  *  F  H  G  R  Y  R  P  Q  V  Q  Q  R  R  W  F  L  W  P  L  P  L  P  K  E  K  :  K  I  K  S  Q  K  S  S  K  S  P  C  Y  *  H  E  N  G  *  Y  S  T  *  *  L  F  M  E  K  I  W  S  K  T  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57904" stop="57063"/>
                    <exon start="56956" stop="56854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>945</number_coding_nucleotides>
                  <number_encoded_amino_acids>315</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPLSSLFTISFFFFFFSLFYGIVNMAVDLMTSGYRTDNFSSKMEETAVQEAATAGLQSVEKLIRLLSKSHQNQQQQQTNFQDSSSGNSSVSADYQAVADAAVNKFKKFISLLDKNRTGHARFRRGPISSLSPPLPSKPQQLQQSIKNQNPQIEEIEKPQASNTKIYCPTPIQRLPPLPHNHLQLVKNGSIERKEASTTINFASPSPATSFMSSLTGETESLQQSLSSGFQITNLSQVSSAGRPPLSTSSFKRKCSSMDDTALKCSSAGGSSGRCHCPKKRKSRVKRVVRVPAISMKMADIPPDDYSWRKYGQKP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="67597" PGL_stop="67918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67597" e_stop="67918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="67597" e_stop="67918" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67597" stop="67918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGAATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCAAAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATGATTAAGTGTATAACACAAAGATATACATTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACGAAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  N  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  Q  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  D  *  V  Y  N  T  K  I  Y  I  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  T  E  I  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  *  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  K  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  M  I  K  C  I  T  Q  R  Y  T  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  R  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  E  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  K  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  K  D  I  H  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  E  N  R  N  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0080H23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="70621" PGL_stop="74313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70621" e_stop="71110"/>
            <exon e_start="72557" e_stop="72792"/>
            <exon e_start="72890" e_stop="73030"/>
            <exon e_start="73344" e_stop="73793"/>
            <exon e_start="73883" e_stop="74313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70621" e_stop="71110" e_length="490"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.977">
            <gDNA_intron_boundary i_start="71111" i_stop="72556" i_length="1446"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72557" e_stop="72792" e_length="236"/>
          </exon>
          <intron i_serial="2" don_prob="0.879" acc_prob="0.998">
            <gDNA_intron_boundary i_start="72793" i_stop="72889" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="72890" e_stop="73030" e_length="141"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73031" i_stop="73343" i_length="313"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73344" e_stop="73793" e_length="450"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="73794" i_stop="73882" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73883" e_stop="74313" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70621" stop="70970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70624" stop="71110"/>
              <exon start="72557" stop="72729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70641" stop="71110"/>
              <exon start="72557" stop="72792"/>
              <exon start="72890" stop="72995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70652" stop="71110"/>
              <exon start="72557" stop="72644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70708" stop="71110"/>
              <exon start="72557" stop="72580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70729" stop="70999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70930" stop="71110"/>
              <exon start="72557" stop="72792"/>
              <exon start="72890" stop="72915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70930" stop="71110"/>
              <exon start="72557" stop="72775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72962" stop="73030"/>
              <exon start="73344" stop="73767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73358" stop="73793"/>
              <exon start="73883" stop="73976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73390" stop="73793"/>
              <exon start="73883" stop="74237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73390" stop="73793"/>
              <exon start="73883" stop="74234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73399" stop="73793"/>
              <exon start="73883" stop="73997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73419" stop="73793"/>
              <exon start="73883" stop="74001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73444" stop="73793"/>
              <exon start="73883" stop="74056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73444" stop="73793"/>
              <exon start="73883" stop="74012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73444" stop="73614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73562" stop="73793"/>
              <exon start="73883" stop="74313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73566" stop="73793"/>
              <exon start="73883" stop="74173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73567" stop="73793"/>
              <exon start="73883" stop="74173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73567" stop="73793"/>
              <exon start="73883" stop="74173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73567" stop="73793"/>
              <exon start="73883" stop="74173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73567" stop="73793"/>
              <exon start="73883" stop="74158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73567" stop="73793"/>
              <exon start="73883" stop="74065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73576" stop="73793"/>
              <exon start="73883" stop="74298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73607" stop="73793"/>
              <exon start="73883" stop="74307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73897" stop="74302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73897" stop="74238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73897" stop="74238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73965" stop="74294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368650" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGATTCATCTCTCCGCTCTAACAATCTCGATCCTCGTAATGGTCGTGTCCTCCGCCGCCGTAACATCGGCGGCGGCAGAGGACATGTCGATTATAAGCTACAACGAAAAACATCACACGATCGGCGCCGGTCGGACCGATGACGAGGTCATGTCTATGTACGAATCGTGGTTAGTTGAACACAAAAAAGTGTACAACGCTTTGGGAGAAAAAGATAAACGGTTCCAGATCTTTAAGGACAACCTTAAATACATCGATGAACATAACGCTATGCCGGAGAAAAGTTATAAGCTCGGTTTGACTAAGTTTGCTGATCTGACCAACGAGGAGTATAGGTCGGTTTATTTGGGTACGAAGCCGGATGCTAGTCGCAGGTTGTCGAGTAGACAAAGTGATCGGTATGCTCCGAAGGTCGGAGATAGGTTGCCGGAATCTGTTGATTGGGTGAAGAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGACAATGTG : GGAGTTGCTGGGCTTTCTCAGCAGTTGCTGCCATTGAAGCAGTAAACAAAATAAAGACTGGAGACTCGATCTCTTTATCCGAGCAGGAGCTAGTAGATTGTGATACTTCTTCTAACAATGGTTGTGACGGTGGTCTCATGGACTATGCTTTTGAATTCGTTATCAAAAATGGAGGACTAGACACTGAGGAAGATTACCCATATACTGGCGAGGATGGAAGATGTGACCTAACAAGG : AAAAATGCCAAGGTTGTCACCATTGACGGGTATGAAGATGTTCCTGCTAATGATGAAAACGCAATGAAAAAGGCTATTGCAAGTCAGCCTGTTAGCGTTGCTATTGAAGCTGGTGGCAAAGACTTCCAGCACTATAAATCG : GGCATCTTTACTGGGAAGTGTGGCGCAGCAGTGGACCATGGTGTGGTTGCAGTGGGATATGGTAGCGAAAATGGCATGGATTATTGGATTGTGAGGAACTCATGGGGTGCTTCCTGGGGAGAACACGGCTACCTCAGGATGCAGCGTAACATTGCTAACCCAAAGGGTTTGTGTGGTATTGCTACAGTTGTTTCTTACCCTGTCAAGACAGGCCAAAATCCCCCGAAACCAGCTCCATCTCCTCCATCGCCAGTCAAGCCACCTACTACTTGTGATGATATGTACAGTTGCCCATCAGGAACAACGTGTTGCTGTGTCTACGAGTACTATCACATGTGCTTTGCTTGGGGTTGCTGCCCTATGGAAGGAGCTACTTGCTGTAAAGACCATAACAGTTGCTGCCCACATGATTATCCTGTCTGCAATGTTAAAGCCGGCACCTGCTCAATC : AGCGAGAATAACCCTCTTTCAGTCAAAGCAATGTCACACATTCTTGCCAAACCTATTGGATCCTTCAGCAATCAGGGAATGAAAAACACTATCTCTTGAAGTGTCTCCAATGGGAATGCGCAAATTCGCAGTGAATTTGCAAAACCTCATTTCCAGCTGAAAGTTTATAGTTATAGGTGATTCCAAAAGCAGAGGATAACAGAGTTGCTGCTGATTTCTGTATAGTGCTTCTTTAGTGCTTGTCACACAATGCACTAGAACAATATTGAAACAAGATTTCATTGTTCTGCTGTTTCTGATTTATGTAAATATTTCCTTTATTTCTTCATCAGGGATGACTATCTGCTACTTTCACAATGCAGTTTATTATTCCATGTGATGCTTCTACTTTCATTTCACTAATAATATCAAAGACTATTGATAAACTCTCT</gDNA_template>
            <first_frame> A  I  H  L  S  A  L  T  I  S  I  L  V  M  V  V  S  S  A  A  V  T  S  A  A  A  E  D  M  S  I  I  S  Y  N  E  K  H  H  T  I  G  A  G  R  T  D  D  E  V  M  S  M  Y  E  S  W  L  V  E  H  K  K  V  Y  N  A  L  G  E  K  D  K  R  F  Q  I  F  K  D  N  L  K  Y  I  D  E  H  N  A  M  P  E  K  S  Y  K  L  G  L  T  K  F  A  D  L  T  N  E  E  Y  R  S  V  Y  L  G  T  K  P  D  A  S  R  R  L  S  S  R  Q  S  D  R  Y  A  P  K  V  G  D  R  L  P  E  S  V  D  W  V  K  K  G  V  L  V  G  V  K  D  Q  G  Q  C   : G  S  C  W  A  F  S  A  V  A  A  I  E  A  V  N  K  I  K  T  G  D  S  I  S  L  S  E  Q  E  L  V  D  C  D  T  S  S  N  N  G  C  D  G  G  L  M  D  Y  A  F  E  F  V  I  K  N  G  G  L  D  T  E  E  D  Y  P  Y  T  G  E  D  G  R  C  D  L  T  R  :  K  N  A  K  V  V  T  I  D  G  Y  E  D  V  P  A  N  D  E  N  A  M  K  K  A  I  A  S  Q  P  V  S  V  A  I  E  A  G  G  K  D  F  Q  H  Y  K  S  :  G  I  F  T  G  K  C  G  A  A  V  D  H  G  V  V  A  V  G  Y  G  S  E  N  G  M  D  Y  W  I  V  R  N  S  W  G  A  S  W  G  E  H  G  Y  L  R  M  Q  R  N  I  A  N  P  K  G  L  C  G  I  A  T  V  V  S  Y  P  V  K  T  G  Q  N  P  P  K  P  A  P  S  P  P  S  P  V  K  P  P  T  T  C  D  D  M  Y  S  C  P  S  G  T  T  C  C  C  V  Y  E  Y  Y  H  M  C  F  A  W  G  C  C  P  M  E  G  A  T  C  C  K  D  H  N  S  C  C  P  H  D  Y  P  V  C  N  V  K  A  G  T  C  S  I  :  S  E  N  N  P  L  S  V  K  A  M  S  H  I  L  A  K  P  I  G  S  F  S  N  Q  G  M  K  N  T  I  S  *  S  V  S  N  G  N  A  Q  I  R  S  E  F  A  K  P  H  F  Q  L  K  V  Y  S  Y  R  *  F  Q  K  Q  R  I  T  E  L  L  L  I  S  V  *  C  F  F  S  A  C  H  T  M  H  *  N  N  I  E  T  R  F  H  C  S  A  V  S  D  L  C  K  Y  F  L  Y  F  F  I  R  D  D  Y  L  L  L  S  Q  C  S  L  L  F  H  V  M  L  L  L  S  F  H  *  *  Y  Q  R  L  L  I  N  S   </first_frame>
            <second_frame>  R  F  I  S  P  L  *  Q  S  R  S  S  *  W  S  C  P  P  P  P  *  H  R  R  R  Q  R  T  C  R  L  *  A  T  T  K  N  I  T  R  S  A  P  V  G  P  M  T  R  S  C  L  C  T  N  R  G  *  L  N  T  K  K  C  T  T  L  W  E  K  K  I  N  G  S  R  S  L  R  T  T  L  N  T  S  M  N  I  T  L  C  R  R  K  V  I  S  S  V  *  L  S  L  L  I  *  P  T  R  S  I  G  R  F  I  W  V  R  S  R  M  L  V  A  G  C  R  V  D  K  V  I  G  M  L  R  R  S  E  I  G  C  R  N  L  L  I  G  *  R  K  V  C  L  L  V  L  R  I  K  D  N  V  :  G  V  A  G  L  S  Q  Q  L  L  P  L  K  Q  *  T  K  *  R  L  E  T  R  S  L  Y  P  S  R  S  *  *  I  V  I  L  L  L  T  M  V  V  T  V  V  S  W  T  M  L  L  N  S  L  S  K  M  E  D  *  T  L  R  K  I  T  H  I  L  A  R  M  E  D  V  T  *  Q  G :   K  M  P  R  L  S  P  L  T  G  M  K  M  F  L  L  M  M  K  T  Q  *  K  R  L  L  Q  V  S  L  L  A  L  L  L  K  L  V  A  K  T  S  S  T  I  N  R :   A  S  L  L  G  S  V  A  Q  Q  W  T  M  V  W  L  Q  W  D  M  V  A  K  M  A  W  I  I  G  L  *  G  T  H  G  V  L  P  G  E  N  T  A  T  S  G  C  S  V  T  L  L  T  Q  R  V  C  V  V  L  L  Q  L  F  L  T  L  S  R  Q  A  K  I  P  R  N  Q  L  H  L  L  H  R  Q  S  S  H  L  L  L  V  M  I  C  T  V  A  H  Q  E  Q  R  V  A  V  S  T  S  T  I  T  C  A  L  L  G  V  A  A  L  W  K  E  L  L  A  V  K  T  I  T  V  A  A  H  M  I  I  L  S  A  M  L  K  P  A  P  A  Q  S :   A  R  I  T  L  F  Q  S  K  Q  C  H  T  F  L  P  N  L  L  D  P  S  A  I  R  E  *  K  T  L  S  L  E  V  S  P  M  G  M  R  K  F  A  V  N  L  Q  N  L  I  S  S  *  K  F  I  V  I  G  D  S  K  S  R  G  *  Q  S  C  C  *  F  L  Y  S  A  S  L  V  L  V  T  Q  C  T  R  T  I  L  K  Q  D  F  I  V  L  L  F  L  I  Y  V  N  I  S  F  I  S  S  S  G  M  T  I  C  Y  F  H  N  A  V  Y  Y  S  M  *  C  F  Y  F  H  F  T  N  N  I  K  D  Y  *  *  T  L  </second_frame>
            <third_frame>   D  S  S  L  R  S  N  N  L  D  P  R  N  G  R  V  L  R  R  R  N  I  G  G  G  R  G  H  V  D  Y  K  L  Q  R  K  T  S  H  D  R  R  R  S  D  R  *  R  G  H  V  Y  V  R  I  V  V  S  *  T  Q  K  S  V  Q  R  F  G  R  K  R  *  T  V  P  D  L  *  G  Q  P  *  I  H  R  *  T  *  R  Y  A  G  E  K  L  *  A  R  F  D  *  V  C  *  S  D  Q  R  G  V  *  V  G  L  F  G  Y  E  A  G  C  *  S  Q  V  V  E  *  T  K  *  S  V  C  S  E  G  R  R  *  V  A  G  I  C  *  L  G  E  E  R  C  A  C  W  C  *  G  S  R  T  M  W :   E  L  L  G  F  L  S  S  C  C  H  *  S  S  K  Q  N  K  D  W  R  L  D  L  F  I  R  A  G  A  S  R  L  *  Y  F  F  *  Q  W  L  *  R  W  S  H  G  L  C  F  *  I  R  Y  Q  K  W  R  T  R  H  *  G  R  L  P  I  Y  W  R  G  W  K  M  *  P  N  K   : E  K  C  Q  G  C  H  H  *  R  V  *  R  C  S  C  *  *  *  K  R  N  E  K  G  Y  C  K  S  A  C  *  R  C  Y  *  S  W  W  Q  R  L  P  A  L  *  I   : G  H  L  Y  W  E  V  W  R  S  S  G  P  W  C  G  C  S  G  I  W  *  R  K  W  H  G  L  L  D  C  E  E  L  M  G  C  F  L  G  R  T  R  L  P  Q  D  A  A  *  H  C  *  P  K  G  F  V  W  Y  C  Y  S  C  F  L  P  C  Q  D  R  P  K  S  P  E  T  S  S  I  S  S  I  A  S  Q  A  T  Y  Y  L  *  *  Y  V  Q  L  P  I  R  N  N  V  L  L  C  L  R  V  L  S  H  V  L  C  L  G  L  L  P  Y  G  R  S  Y  L  L  *  R  P  *  Q  L  L  P  T  *  L  S  C  L  Q  C  *  S  R  H  L  L  N   : Q  R  E  *  P  S  F  S  Q  S  N  V  T  H  S  C  Q  T  Y  W  I  L  Q  Q  S  G  N  E  K  H  Y  L  L  K  C  L  Q  W  E  C  A  N  S  Q  *  I  C  K  T  S  F  P  A  E  S  L  *  L  *  V  I  P  K  A  E  D  N  R  V  A  A  D  F  C  I  V  L  L  *  C  L  S  H  N  A  L  E  Q  Y  *  N  K  I  S  L  F  C  C  F  *  F  M  *  I  F  P  L  F  L  H  Q  G  *  L  S  A  T  F  T  M  Q  F  I  I  P  C  D  A  S  T  F  I  S  L  I  I  S  K  T  I  D  K  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70621" stop="71110"/>
                    <exon start="72557" stop="72792"/>
                    <exon start="72890" stop="73030"/>
                    <exon start="73344" stop="73793"/>
                    <exon start="73883" stop="73981"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIHLSALTISILVMVVSSAAVTSAAAEDMSIISYNEKHHTIGAGRTDDEVMSMYESWLVEHKKVYNALGEKDKRFQIFKDNLKYIDEHNAMPEKSYKLGLTKFADLTNEEYRSVYLGTKPDASRRLSSRQSDRYAPKVGDRLPESVDWVKKGVLVGVKDQGQCGSCWAFSAVAAIEAVNKIKTGDSISLSEQELVDCDTSSNNGCDGGLMDYAFEFVIKNGGLDTEEDYPYTGEDGRCDLTRKNAKVVTIDGYEDVPANDENAMKKAIASQPVSVAIEAGGKDFQHYKSGIFTGKCGAAVDHGVVAVGYGSENGMDYWIVRNSWGASWGEHGYLRMQRNIANPKGLCGIATVVSYPVKTGQNPPKPAPSPPSPVKPPTTCDDMYSCPSGTTCCCVYEYYHMCFAWGCCPMEGATCCKDHNSCCPHDYPVCNVKAGTCSISENNPLSVKAMSHILAKPIGSFSNQGMKNTIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="80488" PGL_stop="78400"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80488" e_stop="80233"/>
            <exon e_start="80155" e_stop="80102"/>
            <exon e_start="79964" e_stop="79833"/>
            <exon e_start="79744" e_stop="79636"/>
            <exon e_start="79431" e_stop="79390"/>
            <exon e_start="79296" e_stop="79240"/>
            <exon e_start="79125" e_stop="78400"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.880" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.721" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="80488" e_stop="80233" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.880" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80232" i_stop="80156" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80155" e_stop="80102" e_length="54"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.957">
            <gDNA_intron_boundary i_start="80101" i_stop="79965" i_length="137"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79964" e_stop="79833" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.991">
            <gDNA_intron_boundary i_start="79832" i_stop="79745" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="79744" e_stop="79636" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.885" acc_prob="0.987">
            <gDNA_intron_boundary i_start="79635" i_stop="79432" i_length="204"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79431" e_stop="79390" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.982">
            <gDNA_intron_boundary i_start="79389" i_stop="79297" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79296" e_stop="79240" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.721" acc_prob="0.982">
            <gDNA_intron_boundary i_start="79239" i_stop="79126" i_length="114"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="79125" e_stop="78400" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80488" stop="80233"/>
              <exon start="80155" stop="80102"/>
              <exon start="79964" stop="79833"/>
              <exon start="79744" stop="79636"/>
              <exon start="79431" stop="79390"/>
              <exon start="79296" stop="79279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80488" stop="80233"/>
              <exon start="80155" stop="80116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80445" stop="80233"/>
              <exon start="80155" stop="80102"/>
              <exon start="79964" stop="79833"/>
              <exon start="79744" stop="79636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80439" stop="80233"/>
              <exon start="80155" stop="80102"/>
              <exon start="79964" stop="79855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80418" stop="80233"/>
              <exon start="80155" stop="80102"/>
              <exon start="79964" stop="79833"/>
              <exon start="79744" stop="79636"/>
              <exon start="79431" stop="79390"/>
              <exon start="79296" stop="79240"/>
              <exon start="79125" stop="78957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80413" stop="80233"/>
              <exon start="80155" stop="80102"/>
              <exon start="79964" stop="79833"/>
              <exon start="79744" stop="79636"/>
              <exon start="79431" stop="79390"/>
              <exon start="79296" stop="79240"/>
              <exon start="79125" stop="79030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78980" stop="78400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAGGCAATAAAGATCATCTCTTTCCTCTCATCAACTTTTGTGATTTGAAGTAGAACACTCTGCACCTTTTTGTTTCTCTAGAACAAAAAAAAAAAAAAAGAGAGAAAATGGAAGGTGGACTCCCCATGCTAAATTGTCTGTTACAACATACACTTAGAAGTGTCTGTACTTGCTCTGACTCTTCTTCTAATGCTTCTGAGTGGGTCTATGCTGTTTTCTGGAGAATTGTCCCAAGAAATTATCCTCCACCTAA : ATGGGATCATGGAGGAGGCTTGCTTGATCGCGCTAAAGGGAACAAGAGAAACTG : GATTCTTGTTTGGGAAGATGGTTTTTGTGACTTTTATGAATGTGAAAGATCGAAAAGGGAACATGTAACGATAAATTTTGGTCCTGAAATCTTCTTCAAAATGTCTCATGAGGTTTATTCTTTTGGTGAAGG : ATTGGTGGGCAAAGTTGCAGCAGATAATAGTCACAGATGGGTGTCTAAAGATGCCCCAAATGAAAAAGATTCAAACTTTACTTGCTCATGGAATATGTCTATTGAAGCT : CAACCAAGAGCCTGGGGAGTTCAGTTTAATTCAGGCATTCAG : ACTATTGCTATTATATCTGTTAGGGAAGGCATAATTCAGCTTGGCTCATTTAACAAG : GCATTTGAAGATCATAATCTAGTATTAAACATTCAGAGGAAATTCAGCTACCTTCAGAGCATACCGGGTATTTATGCAATTCAGAGACCATTTTTGCCAATCCAACATCCATATACTTACAAGCCAAACAATGTCACTCTAGTTAACGAGACGGATAATCAAATGGATGACAAAAACCAGATAATTGGGTCGAAAAGAGTTCATGAGTTTCCGTTCAAGTCTATCAACTTTGGCTATAATAGCCCACAAACTATGGCTAGTCTACCTTTGTGGTCGATGCCTATAGCAGCACCGTCTTGTTATGCTAATGCAGCACATGAGATGAGTTCTTTACATGACAGAGTTACGAGGAACACTACAAGCAAGGATGTCAAGGTTGTCGATGAATTAGGCCATTTGAAGTTTGAGACAGATGAGGAAAATGATCAATTTTCCTTAAACCAGAACTTAGGCCTGGAAAATAAGGTAGTTGAGGTTGGTTTTAGACAATTAGGAAACGGAGGGGCTGCTCCAAATCCAAATTAATTGCAGTTTAGTGTAAGTAACAAACTGCAAAGAGTCTAATTACATAGGGATCTTTTAGTGGTTGTTAATTAGCTTTAACTTGTTGATAAGGTACTGAGTTATATGTTTATATGGTAATGACATAGTAATCTTTAGCAATTTGTTCTGTTCATATTATTTATTGGATATACACTTTCTAAGAAATGTGAACATATTGTTTGG</gDNA_template>
            <first_frame> *  K  A  I  K  I  I  S  F  L  S  S  T  F  V  I  *  S  R  T  L  C  T  F  L  F  L  *  N  K  K  K  K  K  E  R  K  W  K  V  D  S  P  C  *  I  V  C  Y  N  I  H  L  E  V  S  V  L  A  L  T  L  L  L  M  L  L  S  G  S  M  L  F  S  G  E  L  S  Q  E  I  I  L  H  L   : N  G  I  M  E  E  A  C  L  I  A  L  K  G  T  R  E  T   : G  F  L  F  G  K  M  V  F  V  T  F  M  N  V  K  D  R  K  G  N  M  *  R  *  I  L  V  L  K  S  S  S  K  C  L  M  R  F  I  L  L  V  K   : D  W  W  A  K  L  Q  Q  I  I  V  T  D  G  C  L  K  M  P  Q  M  K  K  I  Q  T  L  L  A  H  G  I  C  L  L  K  L :   N  Q  E  P  G  E  F  S  L  I  Q  A  F  R :   L  L  L  L  Y  L  L  G  K  A  *  F  S  L  A  H  L  T  R :   H  L  K  I  I  I  *  Y  *  T  F  R  G  N  S  A  T  F  R  A  Y  R  V  F  M  Q  F  R  D  H  F  C  Q  S  N  I  H  I  L  T  S  Q  T  M  S  L  *  L  T  R  R  I  I  K  W  M  T  K  T  R  *  L  G  R  K  E  F  M  S  F  R  S  S  L  S  T  L  A  I  I  A  H  K  L  W  L  V  Y  L  C  G  R  C  L  *  Q  H  R  L  V  M  L  M  Q  H  M  R  *  V  L  Y  M  T  E  L  R  G  T  L  Q  A  R  M  S  R  L  S  M  N  *  A  I  *  S  L  R  Q  M  R  K  M  I  N  F  P  *  T  R  T  *  A  W  K  I  R  *  L  R  L  V  L  D  N  *  E  T  E  G  L  L  Q  I  Q  I  N  C  S  L  V  *  V  T  N  C  K  E  S  N  Y  I  G  I  F  *  W  L  L  I  S  F  N  L  L  I  R  Y  *  V  I  C  L  Y  G  N  D  I  V  I  F  S  N  L  F  C  S  Y  Y  L  L  D  I  H  F  L  R  N  V  N  I  L  F   </first_frame>
            <second_frame>  K  R  Q  *  R  S  S  L  S  S  H  Q  L  L  *  F  E  V  E  H  S  A  P  F  C  F  S  R  T  K  K  K  K  K  R  E  N  G  R  W  T  P  H  A  K  L  S  V  T  T  Y  T  *  K  C  L  Y  L  L  *  L  F  F  *  C  F  *  V  G  L  C  C  F  L  E  N  C  P  K  K  L  S  S  T  *  :  M  G  S  W  R  R  L  A  *  S  R  *  R  E  Q  E  K  L  :  D  S  C  L  G  R  W  F  L  *  L  L  *  M  *  K  I  E  K  G  T  C  N  D  K  F  W  S  *  N  L  L  Q  N  V  S  *  G  L  F  F  W  *  R  :  I  G  G  Q  S  C  S  R  *  *  S  Q  M  G  V  *  R  C  P  K  *  K  R  F  K  L  Y  L  L  M  E  Y  V  Y  *  S   : S  T  K  S  L  G  S  S  V  *  F  R  H  S   : D  Y  C  Y  Y  I  C  *  G  R  H  N  S  A  W  L  I  *  Q   : G  I  *  R  S  *  S  S  I  K  H  S  E  E  I  Q  L  P  S  E  H  T  G  Y  L  C  N  S  E  T  I  F  A  N  P  T  S  I  Y  L  Q  A  K  Q  C  H  S  S  *  R  D  G  *  S  N  G  *  Q  K  P  D  N  W  V  E  K  S  S  *  V  S  V  Q  V  Y  Q  L  W  L  *  *  P  T  N  Y  G  *  S  T  F  V  V  D  A  Y  S  S  T  V  L  L  C  *  C  S  T  *  D  E  F  F  T  *  Q  S  Y  E  E  H  Y  K  Q  G  C  Q  G  C  R  *  I  R  P  F  E  V  *  D  R  *  G  K  *  S  I  F  L  K  P  E  L  R  P  G  K  *  G  S  *  G  W  F  *  T  I  R  K  R  R  G  C  S  K  S  K  L  I  A  V  *  C  K  *  Q  T  A  K  S  L  I  T  *  G  S  F  S  G  C  *  L  A  L  T  C  *  *  G  T  E  L  Y  V  Y  M  V  M  T  *  *  S  L  A  I  C  S  V  H  I  I  Y  W  I  Y  T  F  *  E  M  *  T  Y  C  L  </second_frame>
            <third_frame>   K  G  N  K  D  H  L  F  P  L  I  N  F  C  D  L  K  *  N  T  L  H  L  F  V  S  L  E  Q  K  K  K  K  R  E  K  M  E  G  G  L  P  M  L  N  C  L  L  Q  H  T  L  R  S  V  C  T  C  S  D  S  S  S  N  A  S  E  W  V  Y  A  V  F  W  R  I  V  P  R  N  Y  P  P  P  K :   W  D  H  G  G  G  L  L  D  R  A  K  G  N  K  R  N  W :   I  L  V  W  E  D  G  F  C  D  F  Y  E  C  E  R  S  K  R  E  H  V  T  I  N  F  G  P  E  I  F  F  K  M  S  H  E  V  Y  S  F  G  E  G :   L  V  G  K  V  A  A  D  N  S  H  R  W  V  S  K  D  A  P  N  E  K  D  S  N  F  T  C  S  W  N  M  S  I  E  A  :  Q  P  R  A  W  G  V  Q  F  N  S  G  I  Q  :  T  I  A  I  I  S  V  R  E  G  I  I  Q  L  G  S  F  N  K  :  A  F  E  D  H  N  L  V  L  N  I  Q  R  K  F  S  Y  L  Q  S  I  P  G  I  Y  A  I  Q  R  P  F  L  P  I  Q  H  P  Y  T  Y  K  P  N  N  V  T  L  V  N  E  T  D  N  Q  M  D  D  K  N  Q  I  I  G  S  K  R  V  H  E  F  P  F  K  S  I  N  F  G  Y  N  S  P  Q  T  M  A  S  L  P  L  W  S  M  P  I  A  A  P  S  C  Y  A  N  A  A  H  E  M  S  S  L  H  D  R  V  T  R  N  T  T  S  K  D  V  K  V  V  D  E  L  G  H  L  K  F  E  T  D  E  E  N  D  Q  F  S  L  N  Q  N  L  G  L  E  N  K  V  V  E  V  G  F  R  Q  L  G  N  G  G  A  A  P  N  P  N  *  L  Q  F  S  V  S  N  K  L  Q  R  V  *  L  H  R  D  L  L  V  V  V  N  *  L  *  L  V  D  K  V  L  S  Y  M  F  I  W  *  *  H  S  N  L  *  Q  F  V  L  F  I  L  F  I  G  Y  T  L  S  K  K  C  E  H  I  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80432" stop="80233"/>
                    <exon start="80155" stop="80102"/>
                    <exon start="79964" stop="79833"/>
                    <exon start="79744" stop="79636"/>
                    <exon start="79431" stop="79390"/>
                    <exon start="79296" stop="79240"/>
                    <exon start="79125" stop="78601"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTLHLFVSLEQKKKKREKMEGGLPMLNCLLQHTLRSVCTCSDSSSNASEWVYAVFWRIVPRNYPPPKWDHGGGLLDRAKGNKRNWILVWEDGFCDFYECERSKREHVTINFGPEIFFKMSHEVYSFGEGLVGKVAADNSHRWVSKDAPNEKDSNFTCSWNMSIEAQPRAWGVQFNSGIQTIAIISVREGIIQLGSFNKAFEDHNLVLNIQRKFSYLQSIPGIYAIQRPFLPIQHPYTYKPNNVTLVNETDNQMDDKNQIIGSKRVHEFPFKSINFGYNSPQTMASLPLWSMPIAAPSCYANAAHEMSSLHDRVTRNTTSKDVKVVDELGHLKFETDEENDQFSLNQNLGLENKVVEVGFRQLGNGGAAPNPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="85750" PGL_stop="82067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85750" e_stop="85316"/>
            <exon e_start="82740" e_stop="82560"/>
            <exon e_start="82442" e_stop="82067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.989" e_score="0.961"/>
          <exon-intron don_prob="0.982" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="85750" e_stop="85316" e_length="435"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.989">
            <gDNA_intron_boundary i_start="85315" i_stop="82741" i_length="2575"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82740" e_stop="82560" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="82442" e_stop="82067" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85750" stop="85316"/>
              <exon start="82740" stop="82632"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85749" stop="85316"/>
              <exon start="82740" stop="82707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85739" stop="85316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85713" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85713" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85713" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85713" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85705" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85699" stop="85316"/>
              <exon start="82740" stop="82565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85697" stop="85316"/>
              <exon start="82740" stop="82666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85688" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85676" stop="85316"/>
              <exon start="82740" stop="82620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85644" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85644" stop="85316"/>
              <exon start="82740" stop="82647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85523" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85473" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85391" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85339" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85331" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85331" stop="85316"/>
              <exon start="82740" stop="82560"/>
              <exon start="82442" stop="82082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82682" stop="82560"/>
              <exon start="82442" stop="82067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTCTCAGATACCATAAATTCCTAATTCCTTTCAAGAAAAAAAAAAAAAAGTAAAAAAGTAAAAATAAAAAAAAAAAAATGGACGTCGGTGGCGGAGCAGTTGCCGGCGACGGTGCTTCTTCTACTTCCTCCGCCGTGTCTCAGTGGACCTTCACCTTATCACAGCGATATCAACACCTTCTGGATAAATCGACACCTCACATCCTTTATCGGTGGATCTTCTTCGCTACGATCGCTTTCATCTTTGCTATTCGCGTGTTCATGGTTCAAGGTTTCTACATCATCACATATGCTTTAGGAATCTACATAATCCAGCTCCTTATTGCTTTCCTTTCCCCTCAAGTCGATCCAGAAGTTGACGGTCCTACCCTTCCCACTCGCGGATCCGATGAGTTTCGCCCTTTCGTTCGTCGCCTTCCTGAATTTAAATTCTG : GTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG : CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTATAATTGTCAATTA</gDNA_template>
            <first_frame> L  S  Q  I  P  *  I  P  N  S  F  Q  E  K  K  K  K  V  K  K  *  K  *  K  K  K  N  G  R  R  W  R  S  S  C  R  R  R  C  F  F  Y  F  L  R  R  V  S  V  D  L  H  L  I  T  A  I  S  T  P  S  G  *  I  D  T  S  H  P  L  S  V  D  L  L  R  Y  D  R  F  H  L  C  Y  S  R  V  H  G  S  R  F  L  H  H  H  I  C  F  R  N  L  H  N  P  A  P  Y  C  F  P  F  P  S  S  R  S  R  S  *  R  S  Y  P  S  H  S  R  I  R  *  V  S  P  F  R  S  S  P  S  *  I  *  I  L  :  V  L  T  I  K  S  S  L  H  C  F  C  V  D  I  L  Q  C  L  *  C  A  C  I  L  A  N  F  V  I  L  L  V  G  T  V  C  F  N  D  E  E  A  N  N  A  H  G  Q  I  *  I  C  A  L  H  I  W  Q  A   : A  L  R  E  E  S  T  I  N  *  *  E  K  C  F  Q  T  L  R  F  K  V  E  *  A  F  Y  G  G  E  *  I  C  F  *  Y  K  F  A  *  M  A  V  F  F  T  G  *  V  S  E  L  G  L  C  H  *  I  Y  D  Y  Q  *  V  L  R  L  *  N  L  V  L  L  E  A  A  T  H  L  D  S  F  V  Y  L  *  A  S  L  W  M  S  I  L  S  S  F  L  N  R  A  L  I  Q  F  N  L  S  S  F  *  Q  V  A  H  P  C  *  S  S  C  I  I  V  N   </first_frame>
            <second_frame>  F  L  R  Y  H  K  F  L  I  P  F  K  K  K  K  K  K  *  K  S  K  N  K  K  K  K  M  D  V  G  G  G  A  V  A  G  D  G  A  S  S  T  S  S  A  V  S  Q  W  T  F  T  L  S  Q  R  Y  Q  H  L  L  D  K  S  T  P  H  I  L  Y  R  W  I  F  F  A  T  I  A  F  I  F  A  I  R  V  F  M  V  Q  G  F  Y  I  I  T  Y  A  L  G  I  Y  I  I  Q  L  L  I  A  F  L  S  P  Q  V  D  P  E  V  D  G  P  T  L  P  T  R  G  S  D  E  F  R  P  F  V  R  R  L  P  E  F  K  F  W :   Y  S  L  S  K  A  V  C  I  A  F  V  L  T  F  F  S  A  F  D  V  P  V  F  W  P  I  L  L  F  Y  W  L  V  L  F  V  S  T  M  K  R  Q  I  M  H  M  V  K  Y  K  Y  V  P  F  T  F  G  K  Q  :  R  Y  G  K  K  A  P  S  T  D  E  R  S  V  S  K  P  *  G  S  K  W  N  E  L  F  M  V  G  N  E  F  V  F  D  T  N  S  P  R  W  L  Y  F  S  P  D  R  F  L  S  L  G  Y  V  I  E  Y  M  I  I  N  E  F  L  D  Y  K  T  *  F  S  *  K  L  P  H  I  L  I  L  S  F  I  C  K  L  A  S  G  C  Q  Y  *  A  H  S  *  T  A  L  L  F  N  S  T  L  V  V  S  N  R  L  H  I  P  V  E  V  L  V  *  L  S  I  </second_frame>
            <third_frame>   F  S  D  T  I  N  S  *  F  L  S  R  K  K  K  K  S  K  K  V  K  I  K  K  K  K  W  T  S  V  A  E  Q  L  P  A  T  V  L  L  L  L  P  P  P  C  L  S  G  P  S  P  Y  H  S  D  I  N  T  F  W  I  N  R  H  L  T  S  F  I  G  G  S  S  S  L  R  S  L  S  S  L  L  F  A  C  S  W  F  K  V  S  T  S  S  H  M  L  *  E  S  T  *  S  S  S  L  L  L  S  F  P  L  K  S  I  Q  K  L  T  V  L  P  F  P  L  A  D  P  M  S  F  A  L  S  F  V  A  F  L  N  L  N  S   : G  T  H  Y  Q  K  Q  S  A  L  L  L  C  *  H  S  S  V  P  L  M  C  L  Y  F  G  Q  F  C  Y  S  I  G  W  Y  C  L  F  Q  R  *  R  G  K  *  C  T  W  S  N  I  N  M  C  P  S  H  L  A  S  S :   V  T  G  R  K  H  H  Q  L  M  R  E  V  F  P  N  L  E  V  Q  S  G  M  S  F  L  W  W  G  M  N  L  F  L  I  Q  I  R  L  D  G  C  I  F  H  R  I  G  F  *  A  W  V  M  S  L  N  I  *  L  S  M  S  S  *  I  I  K  L  S  S  P  R  S  C  H  T  S  *  F  F  R  L  S  V  S  *  P  L  D  V  N  I  E  L  I  L  E  P  R  S  Y  S  I  Q  P  *  *  F  L  T  G  C  T  S  L  L  K  F  L  Y  N  C  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85695" stop="85316"/>
                    <exon start="82740" stop="82560"/>
                    <exon start="82442" stop="82389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKNKKKKMDVGGGAVAGDGASSTSSAVSQWTFTLSQRYQHLLDKSTPHILYRWIFFATIAFIFAIRVFMVQGFYIITYALGIYIIQLLIAFLSPQVDPEVDGPTLPTRGSDEFRPFVRRLPEFKFWYSLSKAVCIAFVLTFFSAFDVPVFWPILLFYWLVLFVSTMKRQIMHMVKYKYVPFTFGKQRYGKKAPSTDERSVSKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83412" e_stop="82560"/>
            <exon e_start="82442" e_stop="82067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.986" e_score="0.997"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="83412" e_stop="82560" e_length="853"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.986">
            <gDNA_intron_boundary i_start="82559" i_stop="82443" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="82442" e_stop="82067" e_length="376"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83412" stop="82664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83412" stop="82709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83412" stop="82828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83412" stop="82878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83412" stop="83044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83411" stop="83243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83091" stop="82560"/>
              <exon start="82442" stop="82416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83091" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83091" stop="82668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82957" stop="82560"/>
              <exon start="82442" stop="82222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82682" stop="82560"/>
              <exon start="82442" stop="82067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGTTCAGATTGTCTGGAAAAAGAAAAGTAAACTTGGGGACCAGCTTCTGACCAGTCATGCTGATCACCAAGTCTATTTGGTTTCCACCCAGTAGTTCTTTGTCTCTCCCAGTAATGGTTCCTGATCCGATGTTGTAATAGTTTTAGTAGCCGGGATGAATATGAATTGTTGACCTTGAGCTTCTGTGATATGCTTCAGCCAGTGCAAGGGCAGAGCAGACTTCTTCTAGACCTTCCTCCTTTACACACACTTAGTTATCTGAATTTTGTTATTTCGCAATATCTTTGCGTGCTTTATTATTTTAAACTGATGCTTGGTGTCCAGGCCAGCTTGAGCATACCTCAAGTATTCCACTATGTACCTGATGCAGTGTTGCTTTCCACTTGCACATGTACTAGGTAATCTTGCCTACCAAAGCTAAGGTGGATGGTATTTGAACTCTAATCTCCAAGGTTTGCACCTGCTTCATTAACCACTAGCCCACACCCTTGGGTGCGTTGCGCTCCGAGGATTCCCATTGAAGTCGATCACTTAATCATATAGCAGAACTTTTTCATTGTGCGCTTCATTTATTTGCCTGTACTTCCGTTAGTCGTAGGCATCATCCAGATTTGTTGGCAATATTATCTTCTTGAATTAGTAGTTTGGCATAATTTTCTTTTCCTTGGCAGGTACTCACTATCAAAAGCAGTCTGCATTGCTTTTGTGTTGACATTCTTCAGTGCCTTTGATGTGCCTGTATTTTGGCCAATTTTGTTATTCTATTGGTTGGTACTGTTTGTTTCAACGATGAAGAGGCAAATAATGCACATGGTCAAATATAAATATGTGCCCTTCACATTTGGCAAGCAG : CGTTACGGGAAGAAAGCACCATCAACTGATGAGAGAAGTGTTTCCAAACCTTGAGGTTCAAAGTGGAATGAGCTTTTTATGGTGGGGAATGAATTTGTTTTTGATACAAATTCGCCTAGATGGCTGTATTTTTCACCGGATAGGTTTCTGAGCTTGGGTTATGTCATTGAATATATGATTATCAATGAGTTCTTAGATTATAAAACTTAGTTCTCCTAGAAGCTGCCACACATCTTGATTCTTTCGTTTATCTGTAAGCTAGCCTCTGGATGTCAATATTGAGCTCATTCTTGAACCGCGCTCTTATTCAATTCAACCTTAGTAGTTTCTAACAGGTTGCACATCCCTGTTGAAGTTCTTGTATAATTGTCAATTA</gDNA_template>
            <first_frame> M  F  R  L  S  G  K  R  K  V  N  L  G  T  S  F  *  P  V  M  L  I  T  K  S  I  W  F  P  P  S  S  S  L  S  L  P  V  M  V  P  D  P  M  L  *  *  F  *  *  P  G  *  I  *  I  V  D  L  E  L  L  *  Y  A  S  A  S  A  R  A  E  Q  T  S  S  R  P  S  S  F  T  H  T  *  L  S  E  F  C  Y  F  A  I  S  L  R  A  L  L  F  *  T  D  A  W  C  P  G  Q  L  E  H  T  S  S  I  P  L  C  T  *  C  S  V  A  F  H  L  H  M  Y  *  V  I  L  P  T  K  A  K  V  D  G  I  *  T  L  I  S  K  V  C  T  C  F  I  N  H  *  P  T  P  L  G  A  L  R  S  E  D  S  H  *  S  R  S  L  N  H  I  A  E  L  F  H  C  A  L  H  L  F  A  C  T  S  V  S  R  R  H  H  P  D  L  L  A  I  L  S  S  *  I  S  S  L  A  *  F  S  F  P  W  Q  V  L  T  I  K  S  S  L  H  C  F  C  V  D  I  L  Q  C  L  *  C  A  C  I  L  A  N  F  V  I  L  L  V  G  T  V  C  F  N  D  E  E  A  N  N  A  H  G  Q  I  *  I  C  A  L  H  I  W  Q  A   : A  L  R  E  E  S  T  I  N  *  *  E  K  C  F  Q  T  L  R  F  K  V  E  *  A  F  Y  G  G  E  *  I  C  F  *  Y  K  F  A  *  M  A  V  F  F  T  G  *  V  S  E  L  G  L  C  H  *  I  Y  D  Y  Q  *  V  L  R  L  *  N  L  V  L  L  E  A  A  T  H  L  D  S  F  V  Y  L  *  A  S  L  W  M  S  I  L  S  S  F  L  N  R  A  L  I  Q  F  N  L  S  S  F  *  Q  V  A  H  P  C  *  S  S  C  I  I  V  N   </first_frame>
            <second_frame>  C  S  D  C  L  E  K  E  K  *  T  W  G  P  A  S  D  Q  S  C  *  S  P  S  L  F  G  F  H  P  V  V  L  C  L  S  Q  *  W  F  L  I  R  C  C  N  S  F  S  S  R  D  E  Y  E  L  L  T  L  S  F  C  D  M  L  Q  P  V  Q  G  Q  S  R  L  L  L  D  L  P  P  L  H  T  L  S  Y  L  N  F  V  I  S  Q  Y  L  C  V  L  Y  Y  F  K  L  M  L  G  V  Q  A  S  L  S  I  P  Q  V  F  H  Y  V  P  D  A  V  L  L  S  T  C  T  C  T  R  *  S  C  L  P  K  L  R  W  M  V  F  E  L  *  S  P  R  F  A  P  A  S  L  T  T  S  P  H  P  W  V  R  C  A  P  R  I  P  I  E  V  D  H  L  I  I  *  Q  N  F  F  I  V  R  F  I  Y  L  P  V  L  P  L  V  V  G  I  I  Q  I  C  W  Q  Y  Y  L  L  E  L  V  V  W  H  N  F  L  F  L  G  R  Y  S  L  S  K  A  V  C  I  A  F  V  L  T  F  F  S  A  F  D  V  P  V  F  W  P  I  L  L  F  Y  W  L  V  L  F  V  S  T  M  K  R  Q  I  M  H  M  V  K  Y  K  Y  V  P  F  T  F  G  K  Q  :  R  Y  G  K  K  A  P  S  T  D  E  R  S  V  S  K  P  *  G  S  K  W  N  E  L  F  M  V  G  N  E  F  V  F  D  T  N  S  P  R  W  L  Y  F  S  P  D  R  F  L  S  L  G  Y  V  I  E  Y  M  I  I  N  E  F  L  D  Y  K  T  *  F  S  *  K  L  P  H  I  L  I  L  S  F  I  C  K  L  A  S  G  C  Q  Y  *  A  H  S  *  T  A  L  L  F  N  S  T  L  V  V  S  N  R  L  H  I  P  V  E  V  L  V  *  L  S  I  </second_frame>
            <third_frame>   V  Q  I  V  W  K  K  K  S  K  L  G  D  Q  L  L  T  S  H  A  D  H  Q  V  Y  L  V  S  T  Q  *  F  F  V  S  P  S  N  G  S  *  S  D  V  V  I  V  L  V  A  G  M  N  M  N  C  *  P  *  A  S  V  I  C  F  S  Q  C  K  G  R  A  D  F  F  *  T  F  L  L  Y  T  H  L  V  I  *  I  L  L  F  R  N  I  F  A  C  F  I  I  L  N  *  C  L  V  S  R  P  A  *  A  Y  L  K  Y  S  T  M  Y  L  M  Q  C  C  F  P  L  A  H  V  L  G  N  L  A  Y  Q  S  *  G  G  W  Y  L  N  S  N  L  Q  G  L  H  L  L  H  *  P  L  A  H  T  L  G  C  V  A  L  R  G  F  P  L  K  S  I  T  *  S  Y  S  R  T  F  S  L  C  A  S  F  I  C  L  Y  F  R  *  S  *  A  S  S  R  F  V  G  N  I  I  F  L  N  *  *  F  G  I  I  F  F  S  L  A  G  T  H  Y  Q  K  Q  S  A  L  L  L  C  *  H  S  S  V  P  L  M  C  L  Y  F  G  Q  F  C  Y  S  I  G  W  Y  C  L  F  Q  R  *  R  G  K  *  C  T  W  S  N  I  N  M  C  P  S  H  L  A  S  S :   V  T  G  R  K  H  H  Q  L  M  R  E  V  F  P  N  L  E  V  Q  S  G  M  S  F  L  W  W  G  M  N  L  F  L  I  Q  I  R  L  D  G  C  I  F  H  R  I  G  F  *  A  W  V  M  S  L  N  I  *  L  S  M  S  S  *  I  I  K  L  S  S  P  R  S  C  H  T  S  *  F  F  R  L  S  V  S  *  P  L  D  V  N  I  E  L  I  L  E  P  R  S  Y  S  I  Q  P  *  *  F  L  T  G  C  T  S  L  L  K  F  L  Y  N  C  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82868" stop="82560"/>
                    <exon start="82442" stop="82389"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNFFIVRFIYLPVLPLVVGIIQICWQYYLLELVVWHNFLFLGRYSLSKAVCIAFVLTFFSAFDVPVFWPILLFYWLVLFVSTMKRQIMHMVKYKYVPFTFGKQRYGKKAPSTDERSVSKP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83297" stop="83010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFLIRCCNSFSSRDEYELLTLSFCDMLQPVQGQSRLLLDLPPLHTLSYLNFVISQYLCVLYYFKLMLGVQASLSIPQVFHYVPDAVLLSTCTCTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="85117" e_stop="83785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="85117" e_stop="83785" e_length="1333"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85117" stop="84278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84766" stop="84400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84612" stop="84237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84331" stop="83785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTGTCAAGATGTGGATTGCTTTAAAAAGTCAGATTTATATTTTTGGGTTTCTGAATACTATGTTCTAAATTAAGAATTCGCATTTCACATAAGCATTTGTACATTCCACAGCATAGTTATTTTTTGAATCTGCTGAGAAGTGTTGAGTTGATGAGTTTAGTTATGTTGTTGTATATTCATGGTTATGGAAGTTTATGCTCCACTGAAAAAAACTTCTGATCTGTTTGCTAATTGCTACCTATTCCGGTCTTCACATGATGATCTAGGATCTGATAAAGAATAGAAGATTCGGAGTGGATAGAAGGAAAACTACTTTCTTAAACTATTTTGTAGTATGACCCTTAGCCAAGCTTAAGATACAATGCTTGGCGGAATTAGCTTGAAACCATTTTGGGCATCAAATTTACATTTTATTTTTTGTTTTGACCTGGTATTTCTGGACTTTTTTCAGTGGTGCCTTTGACCTTCCACTCTACTAGTATGCAATATTGGTTGAATCGTTCAGCATTTGAACCTACTAACTCCAACAATCCAGATTTTTATCGTATGACTAAAGAGGATGCTCTAACATTAGTTTCTCCATCGTGCAGCATGCTATGCGTGAGATTGAGATAGATAGCTTGGGATGTCTGATTTCTTTAAATTCAATCAGTGCAAATTATTGGAAGAGTCTCTCAAAGCTCAAAAGCATGAAAATATGTTGCATCCCTTGTAAAAAAAGGGTGGAAATATGATGCATCCTAATTCTGCCCTAAAACTCTTTTCCTAATTTGAATTATGGATCTCATATATGACAGGATAATAAATTAATAGTATCACAATTAGCTGTTTTGTACTGCCTACATAACTTTGATAGATAGAAAAATCCTACTTACAAAAAAAGGAAATAGATGGATAGGAAACGCACGTATTATTACTGATAAGAATTCATGTGTCGATAGCACCGAGCATGAAGCAATGACATACGGCTTGGTTAGATCTGTTTACTGAATTGGCTGTATAAATAATGTCATTTGTTTTATTCATCGACTGTACTTGTTTCTGTACCATTTATTTTTTAAAATAAAATCCTCGTGTTGCCTACCATATTTTTATTTTCAAGATATTTTTAAATTTAATGATCGAATGAGCTCTCTTTTCTTGCAATATGTCTCTTAACTGGAGTTGAATATAACTCATGTAACTAGTATAAATGCTTCTTATTAGCTTGAGTGATTTTAATGGGGAAGTTCTGTGATTATATGGAGTAGCTTAGGTGATTTTATTTGGAAGCTCTCAGTTACATGGGACAACTTATCTTAATCAGCTAATAATTATAGATAGTATTCAAA</gDNA_template>
            <first_frame> C  C  Q  D  V  D  C  F  K  K  S  D  L  Y  F  W  V  S  E  Y  Y  V  L  N  *  E  F  A  F  H  I  S  I  C  T  F  H  S  I  V  I  F  *  I  C  *  E  V  L  S  *  *  V  *  L  C  C  C  I  F  M  V  M  E  V  Y  A  P  L  K  K  T  S  D  L  F  A  N  C  Y  L  F  R  S  S  H  D  D  L  G  S  D  K  E  *  K  I  R  S  G  *  K  E  N  Y  F  L  K  L  F  C  S  M  T  L  S  Q  A  *  D  T  M  L  G  G  I  S  L  K  P  F  W  A  S  N  L  H  F  I  F  C  F  D  L  V  F  L  D  F  F  Q  W  C  L  *  P  S  T  L  L  V  C  N  I  G  *  I  V  Q  H  L  N  L  L  T  P  T  I  Q  I  F  I  V  *  L  K  R  M  L  *  H  *  F  L  H  R  A  A  C  Y  A  *  D  *  D  R  *  L  G  M  S  D  F  F  K  F  N  Q  C  K  L  L  E  E  S  L  K  A  Q  K  H  E  N  M  L  H  P  L  *  K  K  G  G  N  M  M  H  P  N  S  A  L  K  L  F  S  *  F  E  L  W  I  S  Y  M  T  G  *  *  I  N  S  I  T  I  S  C  F  V  L  P  T  *  L  *  *  I  E  K  S  Y  L  Q  K  K  E  I  D  G  *  E  T  H  V  L  L  L  I  R  I  H  V  S  I  A  P  S  M  K  Q  *  H  T  A  W  L  D  L  F  T  E  L  A  V  *  I  M  S  F  V  L  F  I  D  C  T  C  F  C  T  I  Y  F  L  K  *  N  P  R  V  A  Y  H  I  F  I  F  K  I  F  L  N  L  M  I  E  *  A  L  F  S  C  N  M  S  L  N  W  S  *  I  *  L  M  *  L  V  *  M  L  L  I  S  L  S  D  F  N  G  E  V  L  *  L  Y  G  V  A  *  V  I  L  F  G  S  S  Q  L  H  G  T  T  Y  L  N  Q  L  I  I  I  D  S  I  Q  </first_frame>
            <second_frame>  V  V  K  M  W  I  A  L  K  S  Q  I  Y  I  F  G  F  L  N  T  M  F  *  I  K  N  S  H  F  T  *  A  F  V  H  S  T  A  *  L  F  F  E  S  A  E  K  C  *  V  D  E  F  S  Y  V  V  V  Y  S  W  L  W  K  F  M  L  H  *  K  K  L  L  I  C  L  L  I  A  T  Y  S  G  L  H  M  M  I  *  D  L  I  K  N  R  R  F  G  V  D  R  R  K  T  T  F  L  N  Y  F  V  V  *  P  L  A  K  L  K  I  Q  C  L  A  E  L  A  *  N  H  F  G  H  Q  I  Y  I  L  F  F  V  L  T  W  Y  F  W  T  F  F  S  G  A  F  D  L  P  L  Y  *  Y  A  I  L  V  E  S  F  S  I  *  T  Y  *  L  Q  Q  S  R  F  L  S  Y  D  *  R  G  C  S  N  I  S  F  S  I  V  Q  H  A  M  R  E  I  E  I  D  S  L  G  C  L  I  S  L  N  S  I  S  A  N  Y  W  K  S  L  S  K  L  K  S  M  K  I  C  C  I  P  C  K  K  R  V  E  I  *  C  I  L  I  L  P  *  N  S  F  P  N  L  N  Y  G  S  H  I  *  Q  D  N  K  L  I  V  S  Q  L  A  V  L  Y  C  L  H  N  F  D  R  *  K  N  P  T  Y  K  K  R  K  *  M  D  R  K  R  T  Y  Y  Y  *  *  E  F  M  C  R  *  H  R  A  *  S  N  D  I  R  L  G  *  I  C  L  L  N  W  L  Y  K  *  C  H  L  F  Y  S  S  T  V  L  V  S  V  P  F  I  F  *  N  K  I  L  V  L  P  T  I  F  L  F  S  R  Y  F  *  I  *  *  S  N  E  L  S  F  L  A  I  C  L  L  T  G  V  E  Y  N  S  C  N  *  Y  K  C  F  L  L  A  *  V  I  L  M  G  K  F  C  D  Y  M  E  *  L  R  *  F  Y  L  E  A  L  S  Y  M  G  Q  L  I  L  I  S  *  *  L  *  I  V  F  K </second_frame>
            <third_frame>   L  S  R  C  G  L  L  *  K  V  R  F  I  F  L  G  F  *  I  L  C  S  K  L  R  I  R  I  S  H  K  H  L  Y  I  P  Q  H  S  Y  F  L  N  L  L  R  S  V  E  L  M  S  L  V  M  L  L  Y  I  H  G  Y  G  S  L  C  S  T  E  K  N  F  *  S  V  C  *  L  L  P  I  P  V  F  T  *  *  S  R  I  *  *  R  I  E  D  S  E  W  I  E  G  K  L  L  S  *  T  I  L  *  Y  D  P  *  P  S  L  R  Y  N  A  W  R  N  *  L  E  T  I  L  G  I  K  F  T  F  Y  F  L  F  *  P  G  I  S  G  L  F  S  V  V  P  L  T  F  H  S  T  S  M  Q  Y  W  L  N  R  S  A  F  E  P  T  N  S  N  N  P  D  F  Y  R  M  T  K  E  D  A  L  T  L  V  S  P  S  C  S  M  L  C  V  R  L  R  *  I  A  W  D  V  *  F  L  *  I  Q  S  V  Q  I  I  G  R  V  S  Q  S  S  K  A  *  K  Y  V  A  S  L  V  K  K  G  W  K  Y  D  A  S  *  F  C  P  K  T  L  F  L  I  *  I  M  D  L  I  Y  D  R  I  I  N  *  *  Y  H  N  *  L  F  C  T  A  Y  I  T  L  I  D  R  K  I  L  L  T  K  K  G  N  R  W  I  G  N  A  R  I  I  T  D  K  N  S  C  V  D  S  T  E  H  E  A  M  T  Y  G  L  V  R  S  V  Y  *  I  G  C  I  N  N  V  I  C  F  I  H  R  L  Y  L  F  L  Y  H  L  F  F  K  I  K  S  S  C  C  L  P  Y  F  Y  F  Q  D  I  F  K  F  N  D  R  M  S  S  L  F  L  Q  Y  V  S  *  L  E  L  N  I  T  H  V  T  S  I  N  A  S  Y  *  L  E  *  F  *  W  G  S  S  V  I  I  W  S  S  L  G  D  F  I  W  K  L  S  V  T  W  D  N  L  S  *  S  A  N  N  Y  R  *  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0080H23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="92201" PGL_stop="90124"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92201" e_stop="90124"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="92201" e_stop="90124" e_length="2078"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92201" stop="90138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92152" stop="91576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91355" stop="90807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90829" stop="90394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90779" stop="90394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90538" stop="90124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTAAATCCGAACTAATTTTATTTTCAGGTCCGCTATCAAACTCACCTGTAAATTGCAACTTCATCCGAAAAAGACGAACGCAAAAGGGCTGGTGAAATAGTAAGTGGATATAGTGACCTTGACCTATCTTTGTTATTCTAGTGGTGGATGGGTCAGTCAGCTTCCACCGTCGCCGGAGCTCAAAACCGTATAAAGTCTAGATCTTCGCCGGTGATTTCTTCTATGAAGGAAATTGATGATTCCGACGATGTTATCGATGTATTCGATGTAGGAGAGTTTGATTATTCTTCTAATATTCCTGATGAGTGTTTAGCTTGCATTTTCCATTTCCTTAGCTCAGGTGACCGGAAAAGTTCTTCTCTCGTCTGCCGCCGTTGGCTCCGTGTGGAAGGCCAGAGCCGTCACCGTCTCTCGCTTAATGCACAATCGGAACTTGTGGCTGTTGTTCCTGTGATTTTCTCTAGGTTTGATTCGGTAACGAAACTCGCTTTGAAATGTGACCGTAGATCTGCGAGTATTGGGGATGAGGCGTTGGTGCTTATCTCTTTAAGGTGCCGGAACCTAACTCGTTTGAAGCTTCGGTCGTGCCGGGAGCTTACTGATGCTGGAATGGAATCTTTTGCGAAGAACTGTAAGGGTTTGAAGAAACTATCTTGTGGATCTTGTGCTTTTGGAGCTAAAGGGATGAACGCCGTGTTGAATAACTGCTCGGCTCTGGAAGAGTTGTCCGTGAAGCGGCTGCGTGGTATCACAGATGGGGCTGCAGCTGAGCCAATTGGTCCTGGTGTTGCAGGGGGTTCTCTGAGAGTTATTTGCCTTAAGGAACTCTACAATGGACAGTGTTTTGGACCGTTGATTATTGGATCGAAGAGTTTGCGGACGCTGAAGCTGTTCCGTTGTTCTGGAGATTGGGATAAGATTCTGGAAGTGATTGCTGAACAAGTCAGTGAACTTGTTGAAATTCATCTTGAGAGGCTTCAGGTCAGTGATACCGGTCTTGCTGCTATATCTAAATGTTCCATTCTTGAAATTCTGCACCTTGTGAAAACGCCTGAATGCACTAATAATGGTCTAAAGGCTGTTGCTGAAAACTGTAAGCTTCTAAGAAAGCTTCACATTGATGGGTGGAAGACTAACAGGATAAGTGATGATGGGTTAATTGCTGTGGCAAAACATTGCCCCAATTTACAAGAATTGGTTTTAATAGGTGTGAATCCAACATGTGCTAGTTTGGAGAAGTTGGCTACAAATTGCTTGAATTTAGAGAGATTAGCTCTGTGTGGAAGTGAAACTGTTGGGGATCCAGAACTGTCGTGCATAGCTGCGAAATGTATTGCATTAAGAAAACTTTGTATAAAGAGTTGCCCAGTATCCGATCAGGGTATGGAAGCGCTTGCTAGTGGATGCCCAAATTTGGTAAAAGTAAAGGTTAAGAAATGTAGATTGGTGACTTCTGGAAGTGCAGATTGGTTGCGGACAACTAGGGGCTCCGTTGCTGTGAACTTGGATACACCTGAACCTGAAAATCCTGATGCAAGTGCCAGTGATGGTGGTTTGCCTGAAGTTGGCAATGAAATTAGGCAGGTGGCTGGCCAAGTAAGAGGTGTAAGTATTGCATCAAGCAGTACTGGGAGGTCAAATTCCTTTAAGGCCAGGCTAGGACTTGCAACAGGAAGGAATCTGGTGGCTTGCACATTCAGAAGGTGGTCGAGCTTTGGTGGGAGTTCGAGTTCCAGTTCCAGAAATAATTAGAAAAAAGGAGTTGACTGAGATCAATCTTATGCTCAAATATTCTGCTATTGAAGTTATTTGACTTTTATTACATTTATATATTCTTGAATTTGCATGCTAGTTAATGCAACAACAGATTCAGCCTTCATGGTTGGACCTTGTTCGTGAGTTTTCCTTCTTTTTGTTTTTGCTTATGTTGATGCTATTTTTGGGCTTGGTATGCTCCTTCAACGTGGAGTTCTTCATTTCTCCTGGGAGAGGACTCAACATTCTATCTTCTGAAAAAGAAAGGAAGGAAAAGGTTATAATCCAAGAAGTTGGTGATTTTGGACTACGTGTTTTA</gDNA_template>
            <first_frame> R  I  K  S  E  L  I  L  F  S  G  P  L  S  N  S  P  V  N  C  N  F  I  R  K  R  R  T  Q  K  G  W  *  N  S  K  W  I  *  *  P  *  P  I  F  V  I  L  V  V  D  G  S  V  S  F  H  R  R  R  S  S  K  P  Y  K  V  *  I  F  A  G  D  F  F  Y  E  G  N  *  *  F  R  R  C  Y  R  C  I  R  C  R  R  V  *  L  F  F  *  Y  S  *  *  V  F  S  L  H  F  P  F  P  *  L  R  *  P  E  K  F  F  S  R  L  P  P  L  A  P  C  G  R  P  E  P  S  P  S  L  A  *  C  T  I  G  T  C  G  C  C  S  C  D  F  L  *  V  *  F  G  N  E  T  R  F  E  M  *  P  *  I  C  E  Y  W  G  *  G  V  G  A  Y  L  F  K  V  P  E  P  N  S  F  E  A  S  V  V  P  G  A  Y  *  C  W  N  G  I  F  C  E  E  L  *  G  F  E  E  T  I  L  W  I  L  C  F  W  S  *  R  D  E  R  R  V  E  *  L  L  G  S  G  R  V  V  R  E  A  A  A  W  Y  H  R  W  G  C  S  *  A  N  W  S  W  C  C  R  G  F  S  E  S  Y  L  P  *  G  T  L  Q  W  T  V  F  W  T  V  D  Y  W  I  E  E  F  A  D  A  E  A  V  P  L  F  W  R  L  G  *  D  S  G  S  D  C  *  T  S  Q  *  T  C  *  N  S  S  *  E  A  S  G  Q  *  Y  R  S  C  C  Y  I  *  M  F  H  S  *  N  S  A  P  C  E  N  A  *  M  H  *  *  W  S  K  G  C  C  *  K  L  *  A  S  K  K  A  S  H  *  W  V  E  D  *  Q  D  K  *  *  W  V  N  C  C  G  K  T  L  P  Q  F  T  R  I  G  F  N  R  C  E  S  N  M  C  *  F  G  E  V  G  Y  K  L  L  E  F  R  E  I  S  S  V  W  K  *  N  C  W  G  S  R  T  V  V  H  S  C  E  M  Y  C  I  K  K  T  L  Y  K  E  L  P  S  I  R  S  G  Y  G  S  A  C  *  W  M  P  K  F  G  K  S  K  G  *  E  M  *  I  G  D  F  W  K  C  R  L  V  A  D  N  *  G  L  R  C  C  E  L  G  Y  T  *  T  *  K  S  *  C  K  C  Q  *  W  W  F  A  *  S  W  Q  *  N  *  A  G  G  W  P  S  K  R  C  K  Y  C  I  K  Q  Y  W  E  V  K  F  L  *  G  Q  A  R  T  C  N  R  K  E  S  G  G  L  H  I  Q  K  V  V  E  L  W  W  E  F  E  F  Q  F  Q  K  *  L  E  K  R  S  *  L  R  S  I  L  C  S  N  I  L  L  L  K  L  F  D  F  Y  Y  I  Y  I  F  L  N  L  H  A  S  *  C  N  N  R  F  S  L  H  G  W  T  L  F  V  S  F  P  S  F  C  F  C  L  C  *  C  Y  F  W  A  W  Y  A  P  S  T  W  S  S  S  F  L  L  G  E  D  S  T  F  Y  L  L  K  K  K  G  R  K  R  L  *  S  K  K  L  V  I  L  D  Y  V  F   </first_frame>
            <second_frame>  E  L  N  P  N  *  F  Y  F  Q  V  R  Y  Q  T  H  L  *  I  A  T  S  S  E  K  D  E  R  K  R  A  G  E  I  V  S  G  Y  S  D  L  D  L  S  L  L  F  *  W  W  M  G  Q  S  A  S  T  V  A  G  A  Q  N  R  I  K  S  R  S  S  P  V  I  S  S  M  K  E  I  D  D  S  D  D  V  I  D  V  F  D  V  G  E  F  D  Y  S  S  N  I  P  D  E  C  L  A  C  I  F  H  F  L  S  S  G  D  R  K  S  S  S  L  V  C  R  R  W  L  R  V  E  G  Q  S  R  H  R  L  S  L  N  A  Q  S  E  L  V  A  V  V  P  V  I  F  S  R  F  D  S  V  T  K  L  A  L  K  C  D  R  R  S  A  S  I  G  D  E  A  L  V  L  I  S  L  R  C  R  N  L  T  R  L  K  L  R  S  C  R  E  L  T  D  A  G  M  E  S  F  A  K  N  C  K  G  L  K  K  L  S  C  G  S  C  A  F  G  A  K  G  M  N  A  V  L  N  N  C  S  A  L  E  E  L  S  V  K  R  L  R  G  I  T  D  G  A  A  A  E  P  I  G  P  G  V  A  G  G  S  L  R  V  I  C  L  K  E  L  Y  N  G  Q  C  F  G  P  L  I  I  G  S  K  S  L  R  T  L  K  L  F  R  C  S  G  D  W  D  K  I  L  E  V  I  A  E  Q  V  S  E  L  V  E  I  H  L  E  R  L  Q  V  S  D  T  G  L  A  A  I  S  K  C  S  I  L  E  I  L  H  L  V  K  T  P  E  C  T  N  N  G  L  K  A  V  A  E  N  C  K  L  L  R  K  L  H  I  D  G  W  K  T  N  R  I  S  D  D  G  L  I  A  V  A  K  H  C  P  N  L  Q  E  L  V  L  I  G  V  N  P  T  C  A  S  L  E  K  L  A  T  N  C  L  N  L  E  R  L  A  L  C  G  S  E  T  V  G  D  P  E  L  S  C  I  A  A  K  C  I  A  L  R  K  L  C  I  K  S  C  P  V  S  D  Q  G  M  E  A  L  A  S  G  C  P  N  L  V  K  V  K  V  K  K  C  R  L  V  T  S  G  S  A  D  W  L  R  T  T  R  G  S  V  A  V  N  L  D  T  P  E  P  E  N  P  D  A  S  A  S  D  G  G  L  P  E  V  G  N  E  I  R  Q  V  A  G  Q  V  R  G  V  S  I  A  S  S  S  T  G  R  S  N  S  F  K  A  R  L  G  L  A  T  G  R  N  L  V  A  C  T  F  R  R  W  S  S  F  G  G  S  S  S  S  S  S  R  N  N  *  K  K  G  V  D  *  D  Q  S  Y  A  Q  I  F  C  Y  *  S  Y  L  T  F  I  T  F  I  Y  S  *  I  C  M  L  V  N  A  T  T  D  S  A  F  M  V  G  P  C  S  *  V  F  L  L  F  V  F  A  Y  V  D  A  I  F  G  L  G  M  L  L  Q  R  G  V  L  H  F  S  W  E  R  T  Q  H  S  I  F  *  K  R  K  E  G  K  G  Y  N  P  R  S  W  *  F  W  T  T  C  F  </second_frame>
            <third_frame>   N  *  I  R  T  N  F  I  F  R  S  A  I  K  L  T  C  K  L  Q  L  H  P  K  K  T  N  A  K  G  L  V  K  *  *  V  D  I  V  T  L  T  Y  L  C  Y  S  S  G  G  W  V  S  Q  L  P  P  S  P  E  L  K  T  V  *  S  L  D  L  R  R  *  F  L  L  *  R  K  L  M  I  P  T  M  L  S  M  Y  S  M  *  E  S  L  I  I  L  L  I  F  L  M  S  V  *  L  A  F  S  I  S  L  A  Q  V  T  G  K  V  L  L  S  S  A  A  V  G  S  V  W  K  A  R  A  V  T  V  S  R  L  M  H  N  R  N  L  W  L  L  F  L  *  F  S  L  G  L  I  R  *  R  N  S  L  *  N  V  T  V  D  L  R  V  L  G  M  R  R  W  C  L  S  L  *  G  A  G  T  *  L  V  *  S  F  G  R  A  G  S  L  L  M  L  E  W  N  L  L  R  R  T  V  R  V  *  R  N  Y  L  V  D  L  V  L  L  E  L  K  G  *  T  P  C  *  I  T  A  R  L  W  K  S  C  P  *  S  G  C  V  V  S  Q  M  G  L  Q  L  S  Q  L  V  L  V  L  Q  G  V  L  *  E  L  F  A  L  R  N  S  T  M  D  S  V  L  D  R  *  L  L  D  R  R  V  C  G  R  *  S  C  S  V  V  L  E  I  G  I  R  F  W  K  *  L  L  N  K  S  V  N  L  L  K  F  I  L  R  G  F  R  S  V  I  P  V  L  L  L  Y  L  N  V  P  F  L  K  F  C  T  L  *  K  R  L  N  A  L  I  M  V  *  R  L  L  L  K  T  V  S  F  *  E  S  F  T  L  M  G  G  R  L  T  G  *  V  M  M  G  *  L  L  W  Q  N  I  A  P  I  Y  K  N  W  F  *  *  V  *  I  Q  H  V  L  V  W  R  S  W  L  Q  I  A  *  I  *  R  D  *  L  C  V  E  V  K  L  L  G  I  Q  N  C  R  A  *  L  R  N  V  L  H  *  E  N  F  V  *  R  V  A  Q  Y  P  I  R  V  W  K  R  L  L  V  D  A  Q  I  W  *  K  *  R  L  R  N  V  D  W  *  L  L  E  V  Q  I  G  C  G  Q  L  G  A  P  L  L  *  T  W  I  H  L  N  L  K  I  L  M  Q  V  P  V  M  V  V  C  L  K  L  A  M  K  L  G  R  W  L  A  K  *  E  V  *  V  L  H  Q  A  V  L  G  G  Q  I  P  L  R  P  G  *  D  L  Q  Q  E  G  I  W  W  L  A  H  S  E  G  G  R  A  L  V  G  V  R  V  P  V  P  E  I  I  R  K  K  E  L  T  E  I  N  L  M  L  K  Y  S  A  I  E  V  I  *  L  L  L  H  L  Y  I  L  E  F  A  C  *  L  M  Q  Q  Q  I  Q  P  S  W  L  D  L  V  R  E  F  S  F  F  L  F  L  L  M  L  M  L  F  L  G  L  V  C  S  F  N  V  E  F  F  I  S  P  G  R  G  L  N  I  L  S  S  E  K  E  R  K  E  K  V  I  I  Q  E  V  G  D  F  G  L  R  V  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92056" stop="90446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WWMGQSASTVAGAQNRIKSRSSPVISSMKEIDDSDDVIDVFDVGEFDYSSNIPDECLACIFHFLSSGDRKSSSLVCRRWLRVEGQSRHRLSLNAQSELVAVVPVIFSRFDSVTKLALKCDRRSASIGDEALVLISLRCRNLTRLKLRSCRELTDAGMESFAKNCKGLKKLSCGSCAFGAKGMNAVLNNCSALEELSVKRLRGITDGAAAEPIGPGVAGGSLRVICLKELYNGQCFGPLIIGSKSLRTLKLFRCSGDWDKILEVIAEQVSELVEIHLERLQVSDTGLAAISKCSILEILHLVKTPECTNNGLKAVAENCKLLRKLHIDGWKTNRISDDGLIAVAKHCPNLQELVLIGVNPTCASLEKLATNCLNLERLALCGSETVGDPELSCIAAKCIALRKLCIKSCPVSDQGMEALASGCPNLVKVKVKKCRLVTSGSADWLRTTRGSVAVNLDTPEPENPDASASDGGLPEVGNEIRQVAGQVRGVSIASSSTGRSNSFKARLGLATGRNLVACTFRRWSSFGGSSSSSSRNN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0080H23.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90345" stop="90124"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMQQQIQPSWLDLVREFSFFLFLLMLMLFLGLVCSFNVEFFISPGRGLNILSSEKERKEKVIIQEVGDFGLRVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 174 chains have been computed
$ 
$ memory statistics:
$ 251056 bytes spliced alignments in total
$ 122 spliced alignments have been stored
$ 2057 bytes was the average size of a spliced alignment
$ 19224 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1747 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 187 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 17:39:19
-->
