<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:47:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322190" ref_strand="+" ref_description="SGN-E322190 [cTOB-24-D3]">
      <seq>agtttcggggatttcagctcgtcgaaaagatgattccatttttattggattcatgaacttcttgatccctggattgatatatcagtgtaatctcaaaggtgaagttcctgaccttaaagtatttcgagaaatcgtcgtgcctggatttgatcggacggagtttcaagttaatcaggtattcgtgccaagtaaagatggtgtcaagatacctatgttcatagtgtctagaaagggtatttctcttgatggatgcaacccttgtttattatacggatacggaggattcaatgttagtattacaccacatttttctgctgctcgcgttgtgctcgcgaaacatttaggtgttgtgttttgcatagcaaatattcgtggtggcggagaatatggagaagagtggtataaaggtggtgctcttaacaaaaagcaaaattgctttgatgactttatttctgctgctgagtatcttgtatgtgctggttatacacagccacataagttgtgtattgaaggtggaagcaatggtggacttcttgttggagcctgtgtaaatcaaagacctgatctctttggctgtgctcttgctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="9947" stop="12032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10247" g_stop="10421" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10422" i_stop="10811" i_length="390">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10812" g_stop="11192" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="556" r_length="381" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11193" i_stop="11699" i_length="507">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.460" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11700" g_stop="11732" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="589" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E322190" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10247" e_stop="10421"/>
          <exon e_start="10812" e_stop="11192"/>
          <exon e_start="11700" e_stop="11732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCGGGGATTTCAGCTCGTCGAAAAGATGATTCCATTTTTATTGGATTCATGAACTTCTTGATCCCTGGATTGATATATCAGTGTAATCTCAAAGGTGAAGTTCCTGACCTTAAAGTATTTCGAGAAATCGTCGTGCCTGGATTTGATCGGACGGAGTTTCAAGTTAATCAGGTGAATGAATTTTCGCACTTTATAGACAATTTATGTGATGCTTATGAGTAGCAAAAGTACCAAACCCGTATTTGTGTTAAAAATAAATCATGTATTCCTTACTTTTCAATTTGTTTGTCTGGTTTTGACTTAACACGTAGTTTCAGAGTTTAAGAAAGTAAATAAGATTGTTGAATCTTGTGGTCTTAAACTAATTTTATATAAAATATACCAAAATGCCTCTTGTAATCGTAAACATGTCTGAAATAGTGATTGCCTTGTTTGTTGTTGCATCCCTCTTTTCGTGTTGTTAAATCCAACTGATGTTACCACTCTGTAATACACTGGATTCAACAATGGAAAAAATTGTTTTTTGATCGATTCTTCTTGCGAACGGGGCTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATTAGTGGTACCCCGACCTCAGAGTTATCGTACAAAGAAGCCAAGGGATCAACATATATAGTAGATATACGTTATAAAAAAGACCTATATAAGTAGTGTAATTTTCCGGTGAAGGAATGTCTTGGATAACTGTAGCTCCGCCCCTGATTCTAGTACTGATAATTCAGTGTTAACTTCAAAAATGCAGAGACCTGATCTCTTTGGCTGTGCTCTTGCTCAT</genome_strand>
        <mrna_strand>AGTTTCGGGGATTTCAGCTCGTCGAAAAGATGATTCCATTTTTATTGGATTCATGAACTTCTTGATCCCTGGATTGATATATCAGTGTAATCTCAAAGGTGAAGTTCCTGACCTTAAAGTATTTCGAGAAATCGTCGTGCCTGGATTTGATCGGACGGAGTTTCAAGTTAATCAG......................................................................................................................................................................................................................................................................................................................................................................................................GTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTGATCTCTTTGGCTGTGCTCTTGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302663" ref_strand="+" ref_description="SGN-E302663 [cLEX-1-K2]">
      <seq>cgaggcttcatttgcaggtattcgtgccaagtaaagatggtgtcaagatacctatgttcatagtgtctagaaagggtatttctcttgatggatgcaacccttgtttattatacggatacggaggattcaatgttagtattacaccacatttttctgctgctcgcgttgtgctcgcgaaacatttaggtgttgtgttttgcatagcaaatattcgtggtggcggagaatatggagaagagtggtataaaggtggtgctcttaacaaaaagcaaaattgctttgatgactttatttctgctgctgagtatcttgtatgtgctggttatacacagccacataagttgtgtattgaaggtggaagcaatggtggacttcttgttggagcctgtgtaaatcaggtatttcagatattcgttcaaaggatttaacttatatatacgctaatagtcttgttttatctgttgtaataggtaacattggatgttttgcaggttacgcattcatgtttgcaataaaatttacctgtagttgtcttttaggtgacctaaaagtgaataaaataaaattaggttcaatatgtctatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="10495" stop="11681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10795" g_stop="11381" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E302663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10795" e_stop="11381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGCTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTT</genome_strand>
        <mrna_strand>CGAGGCTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543048" ref_strand="+" ref_description="SGN-E543048 [TUS-64-K15]">
      <seq>cttcatttgcaggtattcgtgccaagtaaagatggtgtcaagatacctatgttcatagtgtctagaaagggtatttctcttgatggatgcaacccttgtttattatacggatacggaggattcaatgttagtattacaccacatttttctgctgctcgcgttgtgctcgcgaaacatttaggtgttgtgttttgcatagcaaatattcgtggtggcggagaatatggagaagagtggtataaaggtggtgctcttaacaaaaagcaaaattgctttgatgactttatttctgctgctgagtatcttgtatgtgctggttatacacagccacataagttgtgtattgaaggtggaagcaatggtggacttcttgttggagcctgtgtaaatcaggtatttcagatattcgttcaaaggatttaacttatatatacgctaatagtcttgttttatctgttgtaataggtaacattggatgttttgcaggttacgcattcatgtttgcaataaaatttacctgtagttgtcttttaggtgacctaaaagtgaataaaataaaattaggttcaatatgtctatttttgcttttgttgcattctagttagtggcggggagtcaagatttttaccaagggcattcaaaatcttaaaatacaggggatcatagaaacccgacacctgtatactggtatgaggtagcaagtacatcgtgaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="10500" stop="11815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10800" g_stop="11515" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E543048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10800" e_stop="11515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATT</genome_strand>
        <mrna_strand>CTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214948" ref_strand="+" ref_description="SGN-E214948 [cLEC-78-N21]">
      <seq>acacagccacataagttgtgtattgaaggtggaagcaatggtggacttcttgttggagcctgtgtaaatcagagacctgatctctttggctgtgctcttgctcatgttggtgttatggatatgcttagattccacaaattcactataggccatgcatggacctctgattttggttgttctgataaggaggaagaatttcagtggctaatcaagtattcaccactgcataatgtgagtaggccatgggaaaaatctgtcaatttagcatttgttcaatacccttccatcatgctattgactgcagatcatgatgatagagttgttccactgcactcattgaaactattggctaccatgcaatacgtcctgtgcacgagccaggagggaagtccccagaccaaccctatcgttggtaggatcgaacgtaaggctggtcatggatgtggacgtccaacacaaaaactcattgatgaagctgcagacagatatgcattcatggctaaagagttgggtgctgcttgggttgagtaaaattatgtttgtacaaaggtataatatggaaaatagtggaacacaaataaggtggtcggattttgatgtcctcacagttggtgcttcatcatccaataaaaggtatctgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="10821" stop="13034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11121" g_stop="11192" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11193" i_stop="11699" i_length="507">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.460" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11700" g_stop="11775" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="148" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11776" i_stop="11876" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11877" g_stop="11940" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="212" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11941" i_stop="12063" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12064" g_stop="12202" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="351" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12203" i_stop="12296" i_length="94">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.300" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12297" g_stop="12410" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="465" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12411" i_stop="12555" i_length="145">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.776" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12734" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="644" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E214948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11121" e_stop="11192"/>
          <exon e_start="11700" e_stop="11775"/>
          <exon e_start="11877" e_stop="11940"/>
          <exon e_start="12064" e_stop="12202"/>
          <exon e_start="12297" e_stop="12410"/>
          <exon e_start="12556" e_stop="12734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATTAGTGGTACCCCGACCTCAGAGTTATCGTACAAAGAAGCCAAGGGATCAACATATATAGTAGATATACGTTATAAAAAAGACCTATATAAGTAGTGTAATTTTCCGGTGAAGGAATGTCTTGGATAACTGTAGCTCCGCCCCTGATTCTAGTACTGATAATTCAGTGTTAACTTCAAAAATGCAGAGACCTGATCTCTTTGGCTGTGCTCTTGCTCATGTTGGTGTTATGGATATGCTTAGATTCCACAAATTCACTATAGGTAAGTTTTTATATATATATATATATATATAAATTTATATTTTGCTACAATTTTGGTTATTGTTTGTGTGTAGTTACAATTTATTTTCCATTTCTCATTAGGCCATGCATGGACCTCTGATTTTGGTTGTTCTGATAAGGAGGAAGAATTTCAGTGGCTAATCAAGTAAGTTTACTATCCTCACTTAAAAAATTCCTCGGACTCTTTAAAAATATTGTCGGTTTTGCATTTTTGGGGGATCTGACACGTGCAACAACATCCAAGTTACTCATCTAATATTCTCTTCAGGTATTCACCACTGCATAATGTGAGTAGGCCATGGGAAAAATCTGTCAATTTAGCATTTGTTCAATACCCTTCCATCATGCTATTGACTGCAGATCATGATGATAGAGTTGTTCCACTGCACTCATTGAAACTATTGGCTGTAAGTTATTAGTTAGCAAAATCATGTTAAATATTATAAATTTACATTATCAGTACATAGAACTTAACTCCATCCATCGCGACATGCTCTGCAGACCATGCAATACGTCCTGTGCACGAGCCAGGAGGGAAGTCCCCAGACCAACCCTATCGTTGGTAGGATCGAACGTAAGGCTGGTCATGGATGTGGACGTCCAACACAAAAACTCGTAAGCTTCTCACCAATAACCATTTATTTTACAACCTGGAGGGCTCGGGTTGATAGTAGCCGTGGTAGCTATGCCCCGGTGAGCTCAATTAATGACCCGAGGTGCCGATTGGGAAAGTCTGAAACTTCATTAACTTGCATTGCAGATTGATGAAGCTGCAGACAGATATGCATTCATGGCTAAAGAGTTGGGTGCTGCTTGGGTTGAGTAAAATTATGTTTGTACAAAGGTATAATATGGAAAATAGTGGAACACAAATAAGGTGGTCGGATTTTGATGTCCTCACAGTTGGTGCTTCATCATCCAATAAAAGGTATCTGCTTG</genome_strand>
        <mrna_strand>ACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTGATCTCTTTGGCTGTGCTCTTGCTCATGTTGGTGTTATGGATATGCTTAGATTCCACAAATTCACTATAG.....................................................................................................GCCATGCATGGACCTCTGATTTTGGTTGTTCTGATAAGGAGGAAGAATTTCAGTGGCTAATCAA...........................................................................................................................GTATTCACCACTGCATAATGTGAGTAGGCCATGGGAAAAATCTGTCAATTTAGCATTTGTTCAATACCCTTCCATCATGCTATTGACTGCAGATCATGATGATAGAGTTGTTCCACTGCACTCATTGAAACTATTGGCT..............................................................................................ACCATGCAATACGTCCTGTGCACGAGCCAGGAGGGAAGTCCCCAGACCAACCCTATCGTTGGTAGGATCGAACGTAAGGCTGGTCATGGATGTGGACGTCCAACACAAAAACTC.................................................................................................................................................ATTGATGAAGCTGCAGACAGATATGCATTCATGGCTAAAGAGTTGGGTGCTGCTTGGGTTGAGTAAAATTATGTTTGTACAAAGGTATAATATGGAAAATAGTGGAACACAAATAAGGTGGTCGGATTTTGATGTCCTCACAGTTGGTGCTTCATCATCCAATAAAAGGTATCTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238038" ref_strand="+" ref_description="SGN-E238038 [cLED-18-L18]">
      <seq>aataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacgtccgggttaaaaatcttagagctgtaggcagtcaagggtgggacctcatgcgtgaaggagaggcagagaagcagaagcagtacgctgcattggtgtggatttctcgtcctgtcagtgatgaagatttgcaaactatatcatcactaaaggaattgaaagttgctcaaaaaacgcctataagggttcttcatcgccgaagtccattggagagagagaaaattatacattggatgcaagtggagagggtatctggaagctcacaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="17896" stop="14383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17596" g_stop="17570" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="99" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="168" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="249" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16175" g_stop="16056" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15943" g_stop="15869" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="444" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15754" g_stop="15674" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="525" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14877" g_stop="14804" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="599" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="14721" g_stop="14683" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="638" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E238038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17596" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16056"/>
          <exon e_start="15943" e_stop="15869"/>
          <exon e_start="15754" e_stop="15674"/>
          <exon e_start="14877" e_stop="14804"/>
          <exon e_start="14721" e_stop="14683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTGAGTTGGTTAATACTTCTAAGCTGTCTTTGATAACTTAAATGAGTGGAGCACACTGCACCACATCATTTTCCCAATATATATGCAACAGTCTTTACATATTTTGCATCAGGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGGTAAACCTCTGGCTATTTGAGCTAGTACTAGCTTATTTACCAGCCGATCTCTGCTTAAAAACATATTTATTTCCACCTATCTTTTCATAAGAAATTTCTTTCCATCCAATACAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTGGTGAGTAATTCTCTATTTGGATTTACTGAAAAGAGTTTGAAGAATCCCTAATCGTTTGTGAAATTTTGCGATAAACCTATCACATATACATTCTTACATATATTAAGAGTGTGTTCGGTAGGATGGAAAATGTTTTAACTGGAAAATATTTTTCTAGGAAACTAAATGGGTTTCTTACTTATTTTCTTCGGTTTGGTACGTAAGCAAAAAATATCATCCTAAAAGCATTTGTATGTAATCAATGTGGAAGGGGGCTATGAGGGTGGGATGAAGATGAGATGTGTGGGAGGGTGGGTAGGCCACAATCAATGAGGAATGCTACTTGTGGAGCTTGTTTTCCTTACTTTCATTAGGGAGCTCATCTTCCTCATTTTTAAGGAGCTTATTTTCTAGAGAATGTTTTTCAAAAATTTTGACTAACCTAACATGTGAAAATTAGAAAATATGTTCTGAAAAGTGTTCTCGTCCGTACCGAATACACCCTAAAAGAATATATCAGAAATATATTGAAAAAACAACTAAGACCAAGATTACCTATTCTTTTTGCTTTGAAAAGAGTACATTTTATATTTTCATGGAGCACTAGCTTTTATTAACTGTTGGAGTGCCTGGCATGATTGTTCATATATCATATCCCCTCCTTTCAATTACGAGTGTTGAACTACTACTAAACATGGGAGTAGCATCAAATGTAGTTGTGTGTGATTTGATAATTTGTTAAGGGCTGATCCACTACCATCTTATCTAATAATATGTTTCATTATCTCTCCCCGTTTTTTGTTTCTCTGGGCTTCAGAAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTGGTATGAACAATTTCTAGCAACAGACTAACAACTATGGGTTTACTTTTATATCAATCGTGACTAGTGTTGTTTCTTGTGACAGGATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</genome_strand>
        <mrna_strand>AATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC................................................................................................................GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG..................................................................................................................AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG..................................................................................GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243511" ref_strand="+" ref_description="SGN-E243511 [cLED-34-F22]">
      <seq>aataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacgtccgggttaaaaatcttagagctgtaggcagtcaagggtgggacctcatgcgtgaaggagaggcagagaagcagaagcagtacgctgcattggtgtggatttctcgtcctgtcagtgatgaagatttgcaaactatatcatcactaaaggaattgaaagttgctcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="17896" stop="15374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17596" g_stop="17570" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="99" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="168" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="249" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16175" g_stop="16056" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15943" g_stop="15869" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="444" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15754" g_stop="15674" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="525" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E243511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17596" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16056"/>
          <exon e_start="15943" e_stop="15869"/>
          <exon e_start="15754" e_stop="15674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTGAGTTGGTTAATACTTCTAAGCTGTCTTTGATAACTTAAATGAGTGGAGCACACTGCACCACATCATTTTCCCAATATATATGCAACAGTCTTTACATATTTTGCATCAGGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGGTAAACCTCTGGCTATTTGAGCTAGTACTAGCTTATTTACCAGCCGATCTCTGCTTAAAAACATATTTATTTCCACCTATCTTTTCATAAGAAATTTCTTTCCATCCAATACAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG</genome_strand>
        <mrna_strand>AATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC................................................................................................................GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG..................................................................................................................AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241558" ref_strand="+" ref_description="SGN-E241558 [cLED-28-N8]">
      <seq>aataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacgtccgggttaaaaatcttagagctgtaggcagtcaagggtgggacctcatgcgtgaaggagaggcagagaagcagaagcagtacgctgcattggtgtggatttctcgtcctgtcagtgatgaagatttgcaaactatatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="17896" stop="15385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17596" g_stop="17570" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="99" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="168" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="249" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16175" g_stop="16056" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="369" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15943" g_stop="15869" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="444" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15754" g_stop="15685" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="514" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E241558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17596" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16056"/>
          <exon e_start="15943" e_stop="15869"/>
          <exon e_start="15754" e_stop="15685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTGAGTTGGTTAATACTTCTAAGCTGTCTTTGATAACTTAAATGAGTGGAGCACACTGCACCACATCATTTTCCCAATATATATGCAACAGTCTTTACATATTTTGCATCAGGTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAGGTAAACCTCTGGCTATTTGAGCTAGTACTAGCTTATTTACCAGCCGATCTCTGCTTAAAAACATATTTATTTCCACCTATCTTTTCATAAGAAATTTCTTTCCATCCAATACAGAAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCAC</genome_strand>
        <mrna_strand>AATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC................................................................................................................GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG..................................................................................................................AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254977" ref_strand="+" ref_description="SGN-E254977 [cLEG-33-P1]">
      <seq>aaataagaggaggaaaacaggtttcactggtgacctcaagacaactggggaatctgttacgcctcatgttgagtcttttgatagtaatattgttgatggagatggactgactaaagtttgtcccaaggaggcccaagatctcagttgtaataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacgtccgggttaaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="18702" stop="15628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18402" g_stop="18383" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18382" i_stop="17725" i_length="658">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17724" g_stop="17570" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="175" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="247" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="397" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16175" g_stop="16056" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="517" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15943" g_stop="15928" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="533" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E254977" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18402" e_stop="18383"/>
          <exon e_start="17724" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16056"/>
          <exon e_start="15943" e_stop="15928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAGGAGGAAAACAGGCATGCTATCTTGTCAAAATGCTTTTTTCCCATTTGAGATTTTAAGTTTCTAGTGCTTGGTACCTTACCTGCTGTTTCTCATTACTGTGTCTCAACCCTTGAGACACTATCGGTGGTGATAGTTGTCTTGTGGGCAGGTAGGCATAGATAAGCATGCATTTTTCATTTTTCTCTTGTTTTGAACAATATTTAGTTTAATCATATGCCAGGATGATGTAAACAGATGATATTTCTGATGTTTTGACTGTTTACTCTATTAAGCTTACTTCAAAAAGTCTTCTGCTTTAGGTTTTTCCAGTTCTTTCCCTTGCCTATATTTAGTACCTCCAGCATATTCATCCTTTTATACTCATATTTTTCCTTCATATGCTGTCTCGAGAAAACTCTAGTATCAGTGTTCAAAGGAAGTAATTTGAAAACAAAAGGAAAATAGAAATCCATGAATTGCGACTTCTATGCTCCTGCATTTGAATATTGGATCTAATTGCTAAAGTGAAACAAGTATCCTCTCAGTACTCTTCATTTTATGATTGCCTGTGCTAACAAAGTTCCATTCTGTGCTCCATAATATCTGCTGGATCAAATGTTACTGGTTGTCATCCCATAGTTTATTTGGGTGCAATAGAAAGTATTGACTGATCGTTGTCAGACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACGTGAGTTGGTTAATACTTCTAAGCTGTCTTTGATAACTTAAATGAGTGGAGCACACTGCACCACATCATTTTCCCAATATATATGCAACAGTCTTTACATATTTTGCATCAGGTCCGGGTTAAAAATC</genome_strand>
        <mrna_strand>AAATAAGAGGAGGAAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACGCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC................................................................................................................GTCCGGGTTAAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238174" ref_strand="+" ref_description="SGN-E238174 [cLED-22-E21]">
      <seq>aataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgttcggatgctcggtacaggccgtccttttcttgtagagatacaaaatgcacgccaagtcccttctgaagcactcataaaagaaatagagaagaaaattaatagtctagaaagtcaatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="17896" stop="15755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17596" g_stop="17570" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="99" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="168" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="249" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16175" g_stop="16055" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="370" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E238174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17596" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACG</genome_strand>
        <mrna_strand>AATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT...............................................................................GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237998" ref_strand="+" ref_description="SGN-E237998 [cLED-18-N3]">
      <seq>aataactttatggctttgttagatttggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataatacgtggggccatccttcctatcttacagggtgacaattatatgtttgatgctgccggttgggaggacattgatgttcggatgctgggcacaggccggacttttctcgtagagatacaacatgcacgccaagtcccttctgaagcactcataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="17758" stop="15796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17596" g_stop="17570" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="99" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="168" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="249" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79">
            <donor d_prob="0.925" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16175" g_stop="16096" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="329" r_length="80" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E237998" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17596" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
          <exon e_start="16175" e_stop="16096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGATGTAAGAAAGATCTGGTTTCTGACAGACCATAATTATTGGATGATTATTGATCCTCTAGTCTCAACACTACCTTTCTCAGGTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAA</genome_strand>
        <mrna_strand>AATAACTTTATGGCTTTGTTAGATTTG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATACGTGGGGCCATCCTTCCTATCTTACAGGGTGACAATTATATGTTTGATGCTGCCGGTTGGGAGGACATTGAT...............................................................................GTTCGGATGCTGGGCACAGGCCGGACTTTTCTCGTAGAGATACAACATGCACGCCAAGTCCCTTCTGAAGCACTCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260183" ref_strand="+" ref_description="SGN-E260183 [cLEG-52-B6]">
      <seq>aaataagaggaggaaaacaggtttcactggtgacctcaagacaactggggaatctgttactcctcatgttgagtcttttgatagtaatattgttgatggagatggactgactaaagtttgtcccaaggaggcccaagatctcagttgtaataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgagccagacacgctgggttattgatgatgaacgaatgggagaagcatccgttgaggaaataataggtggggccatccttcctatcttccagggtgacaattataagtttcatgctgccggtagggaggacattgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="18702" stop="15953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18402" g_stop="18383" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18382" i_stop="17725" i_length="658">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17724" g_stop="17570" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="175" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="247" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16492" g_stop="16424" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="316" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16335" g_stop="16255" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="397" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E260183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18402" e_stop="18383"/>
          <exon e_start="17724" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16424"/>
          <exon e_start="16335" e_stop="16255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAGGAGGAAAACAGGCATGCTATCTTGTCAAAATGCTTTTTTCCCATTTGAGATTTTAAGTTTCTAGTGCTTGGTACCTTACCTGCTGTTTCTCATTACTGTGTCTCAACCCTTGAGACACTATCGGTGGTGATAGTTGTCTTGTGGGCAGGTAGGCATAGATAAGCATGCATTTTTCATTTTTCTCTTGTTTTGAACAATATTTAGTTTAATCATATGCCAGGATGATGTAAACAGATGATATTTCTGATGTTTTGACTGTTTACTCTATTAAGCTTACTTCAAAAAGTCTTCTGCTTTAGGTTTTTCCAGTTCTTTCCCTTGCCTATATTTAGTACCTCCAGCATATTCATCCTTTTATACTCATATTTTTCCTTCATATGCTGTCTCGAGAAAACTCTAGTATCAGTGTTCAAAGGAAGTAATTTGAAAACAAAAGGAAAATAGAAATCCATGAATTGCGACTTCTATGCTCCTGCATTTGAATATTGGATCTAATTGCTAAAGTGAAACAAGTATCCTCTCAGTACTCTTCATTTTATGATTGCCTGTGCTAACAAAGTTCCATTCTGTGCTCCATAATATCTGCTGGATCAAATGTTACTGGTTGTCATCCCATAGTTTATTTGGGTGCAATAGAAAGTATTGACTGATCGTTGTCAGACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAGGTATTTCCCTATTCTTTATTGTAGTAATTTCTGTTGTTGGTAGTTACTGGGATTATAATTGTTAACTCTTCTTTGAATGTTCTCTTAGGAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT</genome_strand>
        <mrna_strand>AAATAAGAGGAGGAAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG........................................................................................GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233511" ref_strand="+" ref_description="SGN-E233511 [cLED-9-O19]">
      <seq>aggctgaatgtcaattcatttctacaaaagacatcttcaaactattagtgataaatccattacaaagattgttgggtgtaaaatctactcaaagttcttttcgcgttcgcttaacatactcacattctgatgcattaacaagagatgacgttcaggaagggaatggaggaaataagaggaggaaaacagacaaagcaggtttcactggtgacctcaagacaactggggaatctgttactcctcatgttgagtcttttgatagtaatattgttgatggagatggactgactaaagtttgtcccaaggaggcccaagatctcagttgtaataacttaatggctaagttagataaggtcggtaagccttgttctctggccattcattgctgcagaagctctacatacattggagggagatatcttaagtattcgagaaatgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="19132" stop="16176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18832" g_stop="18759" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18497" g_stop="18383" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="189" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17733" g_stop="17570" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="353" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17457" g_stop="17386" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="425" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.432" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16492" g_stop="16476" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="442" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E233511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18832" e_stop="18759"/>
          <exon e_start="18497" e_stop="18383"/>
          <exon e_start="17733" e_stop="17570"/>
          <exon e_start="17457" e_stop="17386"/>
          <exon e_start="16492" e_stop="16476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTGGTAATGAAATCTTCTTTTCTGATCTCTTTTGCACCTCTTCTGTAATATCAATGTTTGACACTATGGGATTAGAATTATGTTGGTAATAATTGTTATTTTTCATTTGGTGTGAATATATATGATATATGATACCTTCAAATTGAGAAAGTCAATTGGGGGCAAACGTTCTAACTGAAATGCGTTCTGCTGATTGGTCAATATATAAACCTGTAAAATAAAGGATGTAAATGTATATATATTATGGGTTATTCACGTTTGCAGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAGGCATGCTATCTTGTCAAAATGCTTTTTTCCCATTTGAGATTTTAAGTTTCTAGTGCTTGGTACCTTACCTGCTGTTTCTCATTACTGTGTCTCAACCCTTGAGACACTATCGGTGGTGATAGTTGTCTTGTGGGCAGGTAGGCATAGATAAGCATGCATTTTTCATTTTTCTCTTGTTTTGAACAATATTTAGTTTAATCATATGCCAGGATGATGTAAACAGATGATATTTCTGATGTTTTGACTGTTTACTCTATTAAGCTTACTTCAAAAAGTCTTCTGCTTTAGGTTTTTCCAGTTCTTTCCCTTGCCTATATTTAGTACCTCCAGCATATTCATCCTTTTATACTCATATTTTTCCTTCATATGCTGTCTCGAGAAAACTCTAGTATCAGTGTTCAAAGGAAGTAATTTGAAAACAAAAGGAAAATAGAAATCCATGAATTGCGACTTCTATGCTCCTGCATTTGAATATTGGATCTAATTGCTAAAGTGAAACAAGTATCCTCTCAGTACTCTTCATTTTATGATTGCCTGTGCTAACAAAGTTCCATTCTGTGCTCCATAATATCTGCTGGATCAAATGTTACTGGTTGTCATCCCATAGTTTATTTGGGTGCAATAGAAAGTATTGACTGATCGTTGTCAGACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAGGTATTGAGGACTTCTAATTATTTTTCATATGATGGAACTCCAACTATTCACTCTATTTGAAGTTTATTCAATGTATATATTTTTCAATCATATATAGTGAATTTTTTTTCAGGTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAGGTATAGCAAATTCAACCTGAAAAGCTTTGTTGTAAATATACTTCTCTGCTAAACCCATGAATAAGCACCACTGGCTGTTTGTCATCATTGAATTCTGACTTTCTGAGCTCTGCATACGATTTAGTTTTTTGACTCGAAAACATTATCGCCAGTGTTTATGCTGCTTTCTGTACTTCAAAGAGGTGTAACAAGACTAGAAGGAGAAGGATGCAAAATGTTGTGGAGAAGTTAAATCATCCTATGTGAAGGACTTTCATAGAATGTATGTAGATTGGAGATTGTTGCTTGAGAAAATCTTAATTGCCAGTGAAATGCACTGTCATTTGACTATTAACTACAATTTGACATTGTTGTAGGCTAAACATTGTAAACCAATAGCTTGCACATGTACCCGACACCTTAAGGCACTGAGTGGAGTAACTCACGACTTTTAGAAACCCCTGCTAATCGGGTGATTATGATAATATGTAAAAGAATGTAATCATCCAACCCAAAACCTAGGATAAGTTTAGTGATTAGGAACATTTATTATCCCTTTGAATACCAATATATATCTGATGTAGGACATTATACATCTCTTAACAATTTTGAAATGGTGGAAGGTGGCTTATTCTTCAAATATAACTTATTAAATTACCATTAGATATGTAGGTTATAATTATTCAGCTAAGCTCAATCTTGGTCTCCCCACTGTTATTGGACATGTGTAGCAAGCAAGCCCATGTACTAATCTCATGTCTGTTTCTGAGAAGGGTTATATCTATATTTGTGAATTCTGCTTCTTGCTCATTATCACAAACTTTATGTTTGATCAACCCTTCTTAGTTCCATAGTCCATTTAAAAAGTTGCTCTGATGGAGTATTAACCACCTGAGAATGTGCCTTTACTGCAGTATTCGAGAAATGTGAG</genome_strand>
        <mrna_strand>AGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG.....................................................................................................................................................................................................................................................................GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG................................................................................................................GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGAGAAATGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266898" ref_strand="+" ref_description="SGN-E266898 [cLEI-7-K5]">
      <seq>gcttttgcaaaatatgcttaagcattttgcaatttctctattatgatgatactggaactttattaaaaaagtatagtgccgatgactttgctgtagtaatttctgaacttgtaaagcaacaatatcaacaaattgatagtttttctcttgaagtctcattgccttcggttgtaacagaaaatgatcaagcagtttggttgtatatgaagaataagtaccgccatgaactttggttccaagagaaggctgaatgtcaattcatttctacaaaagacatcttcaaactattagtgataaatccattacaaagattgttgggtgtaaaatctactcaaagttcttttcgcgttcgcttaacatactcacattctgatgcattaacaagagatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="19595" stop="18123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19296" g_stop="19101" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18879" g_stop="18759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="317" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18497" g_stop="18423" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="392" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E266898" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19296" e_stop="19101"/>
          <exon e_start="18879" e_stop="18759"/>
          <exon e_start="18497" e_stop="18423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTAAGATTTTAGAGTCTGATGAATTTCTTTATCAATTTCATTCACGTTGGATAGGAGGGTCAGATGCCCCTCCAAAATACTTATGCTAATTTTCTTTCTTCGATCTGAAACTTATACTTAGATTTTGTTGTTTTCCACCATTAACTTCCATATATATATATATATATATATGTATGTATGCCTTTCTTATTTGAATACCTTCCAATATATTTTGTTTTCAGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTGGTAATGAAATCTTCTTTTCTGATCTCTTTTGCACCTCTTCTGTAATATCAATGTTTGACACTATGGGATTAGAATTATGTTGGTAATAATTGTTATTTTTCATTTGGTGTGAATATATATGATATATGATACCTTCAAATTGAGAAAGTCAATTGGGGGCAAACGTTCTAACTGAAATGCGTTCTGCTGATTGGTCAATATATAAACCTGTAAAATAAAGGATGTAAATGTATATATATTATGGGTTATTCACGTTTGCAGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGAC</genome_strand>
        <mrna_strand>GCTTTTGCAAAATATGCTTAAGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG.............................................................................................................................................................................................................................GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG.....................................................................................................................................................................................................................................................................GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317035" ref_strand="+" ref_description="SGN-E317035 [cTOA-27-M23]">
      <seq>attcattttagttcaaagtagtgccgccagtcgcctaatttacctgatggcgggtgaagttgcggcggcggaggttatcggcgtcaagcacttgagttcggctgaagctgcggcggaggaggagaagctacgtcttctccgcgaagccgtccatgcgctgccagtgagcgccgtcaaagatttatggtccattggggcatgtgttcgatgcattttccgactatttggacttcatgaactcatgtgttcacatccttcactctcaatatcaaagtggtgtgatattttagaagatgtgatgagaaacaaagatggagaatttaatgagcaatcacatcaagaacgatcaagggagacaaacttttgcaaaatatgcttaggcattttgcaatttctctattatgatgatactggaactttattaaaaaagtatagtgccgatgactttgctgtagtaatttctgaacttgtaaagcaacaatatcaacaaattgatagtttttctcttgaagtctcattgccttcggttgtaacagaaaatgatcaagcagtttggttgtatatgaagaataagtaccgccatgaactttggttccaagagaaggctgaatgtcaattcatttctacaaaagacatcttcaaactattagtgataaatccattacaaagattgtttgggtgtaaaatctactcaaagttcttttcgcgttcgcttaacatactcacattctgatgcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="21360" stop="18135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21060" g_stop="20865" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19459" g_stop="19101" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="555" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18879" g_stop="18759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="677" r_length="122" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18497" g_stop="18435" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="740" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E317035" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21060" e_stop="20865"/>
          <exon e_start="19459" e_stop="19101"/>
          <exon e_start="18879" e_stop="18759"/>
          <exon e_start="18497" e_stop="18435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGGGTGCGTTTGTTTTTTATTGATATTTTATAAAGCGATTAATTTTGTTTCTTAGAAAAGAGTTGAACTTTCTATGTTTTTGAGTTAGATTTCGTTATAAATTTAACTTGGTAGTTTTGTTTTTGAATGTTTAGTTTAATTCTGTGAAATAAAAACTTCAAATTTCTTGTAGTATCACATAGATATTCCTTTATTAGTACATTAGTGTATTCATTGAAACTATGGATTGTTTGGAGAAGAGAAAGAAAATGTCATGAAAGTGTTAGCTTTAGAGTTAATTCGAGCTAGAGTTCGTTCTACAAGCTTCTTCGAGATGTAATTAGATCATATACGATAGAAAGCTGAATCACTAGTAAAGAAATTGGGATGCAAAGTTTCTTAGTGAATCTTCATTTTCGTAGAGTAGGTTGGGTATGAAATGTACTGAGGTTCTAGAGTTCAAGTATCAGTTGATCATGTTATATGACATAGCAACTTTCAGCTTCAAGTCACAAAAAAAGAGCTATTTGAGTAAGTACATCATTTAAATTGGGAGATAAGGAGCTCTTACTACTGATTCCCTCTTTGTTATAGCAGGAGGATTTAAGCATGTCTTTTGATACTGTTACCATTATAAAAAAAAAGCATACGTCTTTTGATAAATTCCACATAAGCCCTCTCCTTTTATTTATTCACGGGATATCTTAGCTTCAAGGTGGGTTGACATAGTTGAACATTGCACTTTCTGGAAATGATGAGAGGAGCATTGAATTCTATACTTTCACATATATGATCATAAAAAGCTTTTGAGGACTACTTCTATAATCTATTTTACCTCCTGCTCCCCTCATCCACTGCAATCCACCCTGCCGCCAACGCATGCACTAACCTTTTGCATACCAGGGTGCATTCAGGTGCATGGGTCTTGGAAGGTGCTGCTTGTGGTTGGTAGAGAGGTTTGCAAGAACATTACGGGTGTAAAACTAAGTGATTGAATTTATTGATTTGTTTGCAAAATGACTAAAATGACTGAATTTTATGAACATTAATGTATTGGTGGACCAAAACTATATCTTCGCGTTAGTAAGAGTATTTTGTAAAAGTAGGTTTCTGGTGAATTAAGTCCATTTTTTGTAATTTCAAAGCCATGTCAAATGGCTTGTTGCACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTAAAGGTAATCTGATTATTGACTATGCGATACTTGAGGAACTTTCTTCCTCTAAGGAAAGAAGTGAATAATTGGTGAAGGTAATCTGATTATTGACTATGGTCGGTCATCCATCTGTAATTAATTTGTCCAGTCAATGAGTAGAAGACATTTTCTATTAATTCTTAATCTAGCAACTCAAAGAACTTTTTTTTTTTAATTTTATTTTAGGCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTGGTAAGATTTTAGAGTCTGATGAATTTCTTTATCAATTTCATTCACGTTGGATAGGAGGGTCAGATGCCCCTCCAAAATACTTATGCTAATTTTCTTTCTTCGATCTGAAACTTATACTTAGATTTTGTTGTTTTCCACCATTAACTTCCATATATATATATATATATATATGTATGTATGCCTTTCTTATTTGAATACCTTCCAATATATTTTGTTTTCAGGTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTG-TTGGTAATGAAATCTTCTTTTCTGATCTCTTTTGCACCTCTTCTGTAATATCAATGTTTGACACTATGGGATTAGAATTATGTTGGTAATAATTGTTATTTTTCATTTGGTGTGAATATATATGATATATGATACCTTCAAATTGAGAAAGTCAATTGGGGGCAAACGTTCTAACTGAAATGCGTTCTGCTGATTGGTCAATATATAAACCTGTAAAATAAAGGATGTAAATGTATATATATTATGGGTTATTCACGTTTGCAGGGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTA</genome_strand>
        <mrna_strand>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG.............................................................................................................................................................................................................................GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTTG.....................................................................................................................................................................................................................................................................GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218393" ref_strand="+" ref_description="SGN-E218393 [cLEL-18-K7](-)">
      <seq>aaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttaaaagtaatgccttgttactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattatcgtatgcacattggcagaaaaaaggagnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22382" stop="21543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22082" g_stop="21844" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="251" polyA_stop="264"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E218393" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22082" e_stop="21844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCAG</genome_strand>
        <mrna_strand>AAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAAAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366934" ref_strand="+" ref_description="SGN-E366934 [cLPT-6-O11](-)">
      <seq>ggtctatcccaagtcatggactgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcagcatctacacatgagagtttacacagactcaacctcattgagaggcgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttattactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttcccttaaattatgataaatgaagagcattttgaattatcgtatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22594" stop="21551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22294" g_stop="21845" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E366934" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22294" e_stop="21845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCA</genome_strand>
        <mrna_strand>GGTCTATCCCAAGTCATGGACTGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAGCATCTACACATGAGAGTTTACACAGACTCAACCTCATTGAGAGGCGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTATTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTCCCTTAAATTATGATAAATGAAGAGCATTTTGAATTATCGTATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366809" ref_strand="+" ref_description="SGN-E366809 [cLPT-6-O23](-)">
      <seq>gggcacgacagtacctcggtcagcaaatatacatgagagtttacacagactcaacctcattgagaggcgaatatccaataccaagaggcactcgtctttgtggcaaggtggctaatcggcacacccgaaccctttaaagcaaattctgcaattctagtagaggataatttaattttatacaaaccttttgtattatttgagtttagaagtaatgccttattactactagtaactgctaaaatgcccttagctcaaggtcgcattcttttttcaatcccccgaaaacattataatttgttctttccccattgttgtagtccccttaaattatgataaatgaagagccttttgaattatggtatgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22517" stop="21551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22217" g_stop="21845" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E366809" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22217" e_stop="21845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCA</genome_strand>
        <mrna_strand>GGGCACGACAGTACCTCGGTCAGCAAATATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGGCGAATATCCAATACCAAGAGGCACTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACCCGAACCCTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAAACCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTATTACTACTAGTAACTGCTAAAATGCCCTTAGCTCAAGGTCGCATTCTTTTTTCAATCCCCCGAAAACATTATAATTTGTTCTTTCCCCATTGTTGTAGTCCCCTTAAATTATGATAAATGAAGAGCCTTTTGAATTATGGTATGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283282" ref_strand="+" ref_description="SGN-E283282 [cLER-12-G14]">
      <seq>agagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttattactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattatcgtatgcacattgccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22455" stop="21543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22155" g_stop="21848" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="320"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E283282" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22155" e_stop="21848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTG</genome_strand>
        <mrna_strand>AGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTATTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373776" ref_strand="+" ref_description="SGN-E373776 [TUS-31-I8](-)">
      <seq>gactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttattactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattatcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23024" stop="21557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22724" g_stop="22540" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="264" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22293" g_stop="21858" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="700" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="713"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E373776" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22724" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="21858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</genome_strand>
        <mrna_strand>GACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTATTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391404" ref_strand="+" ref_description="SGN-E391404 [TUS-48-D10](-)">
      <seq>aagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttattactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattatcgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23015" stop="21557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22715" g_stop="22540" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="255" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22293" g_stop="21858" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="691" r_length="436" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="692" polyA_stop="702"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E391404" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22715" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="21858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</genome_strand>
        <mrna_strand>AAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTATTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342769" ref_strand="+" ref_description="SGN-E342769 [cTOF-7-I6]">
      <seq>agagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattatcgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22482" stop="21557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22182" g_stop="21858" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="347"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E342769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22182" e_stop="21858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</genome_strand>
        <mrna_strand>AGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E218841" ref_strand="+" ref_description="SGN-E218841 [cLEL-18-A10](-)">
      <seq>gtttacacagactcaacctcattagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattntcgtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22479" stop="21557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22179" g_stop="21858" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="322" polyA_stop="337"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E218841" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22179" e_stop="21858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGT</genome_strand>
        <mrna_strand>GTTTACACAGACTCAACCTCATT-AGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTNTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343262" ref_strand="+" ref_description="SGN-E343262 [cTOF-17-M16]">
      <seq>ccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaattaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22586" stop="21562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22286" g_stop="21863" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="445"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E343262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22286" e_stop="21863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATT</genome_strand>
        <mrna_strand>CCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745214" ref_strand="+" ref_description="SGN-E745214 [GI|47105832]">
      <seq>gattatagcaaattgcagtgctaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctaaaatgaccttagctcaaggtcgcattctttcttcaattccacgaaaacattatattttgttctttcctcattgttgtagttaccttaaattatgataaatgaagtgcattttgaatgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26888" stop="21562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26589" g_stop="26407" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="293" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="564" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="667" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="1013" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1014" r_stop="1376" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1377" r_stop="1455" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22293" g_stop="21866" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1456" r_stop="1883" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1887" polyA_stop="1906"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E745214" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1883</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26589" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="21866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATAGCAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGA</genome_strand>
        <mrna_strand>GATTATAGCAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320681" ref_strand="+" ref_description="SGN-E320681 [cTOB-27-I14]">
      <seq>tcaggtatgcttccccaactggtaaattcctccaccagttggggaatcaggtatgcttccaactctgaatccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtangaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggataatttaattttatacaatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctaaaatgaccttagctcagggtcgcattcttttcttcattccacgaaacattatattttgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22989" stop="21617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22684" g_stop="22540" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="209" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="288" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22293" g_stop="21917" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="664" r_length="376" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E320681" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22684" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="21917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCT</genome_strand>
        <mrna_strand>CTGAATCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTANGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAGGGTCGCATTCTTTTCTTCATTCCACG-AAACATTATATTTTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323137" ref_strand="+" ref_description="SGN-E323137 [cTOB-28-N21]">
      <seq>tcaggtatgcttccccaactggtaaattcctccaccagttggggaatcaggtatgcttccaactctgaatccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcattgagagacgaatatccaattccaagaggcgctcgtctttgtggcaaggtggctaatcggcacacacgaccactttaaagcaaattctgcaattctagtagaggaatatttaattttatacnatccttttgtattatttgagtttagaagtaatgccttgttactactagtagctgctnaaatgaccttagctcaaggtcgcattctttctttcattcacgaaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22989" stop="21629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22684" g_stop="22540" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="209" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="288" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22293" g_stop="21929" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="652" r_length="364" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E323137" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22684" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="21929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATT</genome_strand>
        <mrna_strand>CTGAATCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGAATATTTAATTTTATACNATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTNAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTTCATT-CACGAAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744838" ref_strand="+" ref_description="SGN-E744838 [GI|1944574]">
      <seq>agaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggaatacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattatggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaactcaggtctatcccaagtcatggaccgcgatatacattgcattggacaatgtaggaatgtggaacctgaggactgaattctgggcacgacagtacctcggtcaacaactatacatgagagtttacacagactcaacctcaacctcattgagagacgaatatccaattccaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26779" stop="21832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26479" g_stop="26407" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="183" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="454" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="557" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="903" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="1266" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1267" r_stop="1345" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="22293" g_stop="22160" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1346" r_stop="1479" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E744838" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1479</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26479" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="22160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTC</genome_strand>
        <mrna_strand>AGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAATACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTATGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324978" ref_strand="+" ref_description="SGN-E324978 [cTOC-11-D12]">
      <seq>cttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaagaacggatacaaccttcgtgatgcagtttcacgttgcacaactcangtctatcccaagtcatggaccgcgatatacattgcattggacaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23315" stop="21947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23015" g_stop="22993" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="386" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22451" g_stop="22373" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="465" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22293" g_stop="22247" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="512" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E324978" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23015" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22373"/>
          <exon e_start="22293" e_stop="22247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAGGTAAGAACAAAACAGAGGAAAAACAGAATTTGAAGTCTATTTAGAAGTCAAACTAACGCGATTAAATGTTAAAATGTAGGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGT</genome_strand>
        <mrna_strand>CTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAAGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAN...............................................................................GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268673" ref_strand="+" ref_description="SGN-E268673 [cLEM-9-C3]">
      <seq>tacatcgttgtttcatctcgtttcacgactccagttctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23444" stop="22077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23144" g_stop="22993" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="515" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22451" g_stop="22377" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="590" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E268673" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23144" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAAC</genome_strand>
        <mrna_strand>TACATCGTTGTTTCATCTCGTTTCACGACTCCAGTTCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391060" ref_strand="+" ref_description="SGN-E391060 [TUS-48-D10]">
      <seq>attcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccactcctcaccaccactgctgtacttcactatagcagctctaaccaccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattatggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatancaccttcgtgatgcagtttcacgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23518" stop="22081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23218" g_stop="22993" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="589" r_length="363" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22451" g_stop="22381" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="660" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E391060" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23218" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCA</genome_strand>
        <mrna_strand>ATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCACTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACCACCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTATGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATANCACCTTCGTGATGCAGTTTCACGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325880" ref_strand="+" ref_description="SGN-E325880 [cTOC-12-C5]">
      <seq>atcaacacaactaaaaccatcagacattgttgctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccaatggactcaagctagtaggaacggatacaaccttcgtgatgcagtttcacgttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23141" stop="22081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22841" g_stop="22540" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22451" g_stop="22381" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="373" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E325880" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22841" e_stop="22540"/>
          <exon e_start="22451" e_stop="22381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCA</genome_strand>
        <mrna_strand>ATCAACACAACTAAAACCATCAGACATTGTTGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAATGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308500" ref_strand="+" ref_description="SGN-E308500 [cLEY-21-B9]">
      <seq>gtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctatgtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccaaagctggcatcttgatggctactctttttgggttgtagggatggatggaggccactggactcaagctagtttgaacggatacaaccttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23344" stop="22101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23044" g_stop="22993" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="415" r_length="363" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22451" g_stop="22401" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="466" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E308500" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23044" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCG</genome_strand>
        <mrna_strand>GTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTATGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAAAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCACTGGACTCAAGCTAGTTTGAACGGATACAACCTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342771" ref_strand="+" ref_description="SGN-E342771 [cTOF-7-I20]">
      <seq>tgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatggaggccagtggactcaagctagtaggaacggatacaaccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23563" stop="22102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23263" g_stop="22993" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="634" r_length="363" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22451" g_stop="22402" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="684" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E342771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23263" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTC</genome_strand>
        <mrna_strand>TGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689221" ref_strand="+" ref_description="SGN-E689221 [t3_tus_80_K02]">
      <seq>caaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccngtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggctattcattgagattatattcgaaaataatgaggacatcgtccagagctggcttcttgatggctactctttttgggttgtagggatggatggaggccagtggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="24347" stop="22131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24047" g_stop="24032" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="119" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="465" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="828" r_length="363" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22451" g_stop="22431" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="829" r_stop="849" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E689221" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24047" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGGAGGCCAGTGGAC</genome_strand>
        <mrna_strand>CAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCNGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCTATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCTTCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGGAGGCCAGTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366808" ref_strand="+" ref_description="SGN-E366808 [cLPT-6-O23]">
      <seq>taagattggccagcatgaacatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcaccactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctccggccctcctcctggtggacctaccatccaaattgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattatggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaacaatgaggacatcgtccagagctggcatcttgatggctactctttttgggttgtagggatggatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23464" stop="22235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23164" g_stop="22993" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="192" r_length="172" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22540" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="555" r_length="363" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22451" g_stop="22443" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="564" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E366808" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23164" e_stop="22993"/>
          <exon e_start="22902" e_stop="22540"/>
          <exon e_start="22451" e_stop="22443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGGGTAAGTTAGAACAAAATTCACTTCTAATGCCCCGTGATTTTCTAATACATTCATTCTTGATATTGATTTTTCCCAATGTTAAATGCAGGATGGATGG</genome_strand>
        <mrna_strand>ATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACCACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCCGGCCCTCCTCCTGGTGGACCTACCATCCAAATTGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTATGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAACAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG........................................................................................GATGGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346126" ref_strand="+" ref_description="SGN-E346126 [cTOF-34-K9]">
      <seq>ttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaataatgaggacatcgtccagagctggcatcttgatggctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23487" stop="22255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23187" g_stop="22993" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22555" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="543" r_length="348" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E346126" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23187" e_stop="22993"/>
          <exon e_start="22902" e_stop="22555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTC</genome_strand>
        <mrna_strand>TTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316901" ref_strand="+" ref_description="SGN-E316901 [cTOA-27-O2]">
      <seq>gaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggnaggatttaccnagacacgtctgttctaggtgttaattacaggcaattcattgagattatattcgaaaatatgaggacatcgtccagagctggcatcttgatgggcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23637" stop="22258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23337" g_stop="22993" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22558" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="690" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E316901" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23337" e_stop="22993"/>
          <exon e_start="22902" e_stop="22558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGAT-GGCTA</genome_strand>
        <mrna_strand>GAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGNAGGATTTACCNAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAAT-ATGAGGACATCGTCCAGAGCTGGCATCTTGATGGGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307568" ref_strand="+" ref_description="SGN-E307568 [cLEY-16-A15]">
      <seq>ttgaagtagagggaacacacacatggcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggtggaggaatttaccaagacacgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23554" stop="22344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23254" g_stop="22993" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22644" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="521" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E307568" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23254" e_stop="22993"/>
          <exon e_start="22902" e_stop="22644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCT</genome_strand>
        <mrna_strand>TTGAAGTAGAGGGAACACACACATGGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202924" ref_strand="+" ref_description="SGN-E202924 [cLEB-1-F18]">
      <seq>gcacgagagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgtcaacagcgtgtcgtttgtgccacttgatactcctctaaaactactcgactacttcaagattggcggattcagagttggaagcatacctgattccccaactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23642" stop="22368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="355" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22902" g_stop="22668" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="590" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E202924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGT</genome_strand>
        <mrna_strand>GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348390" ref_strand="+" ref_description="SGN-E348390 [cTOF-27-O10]">
      <seq>aggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtatgatcaacacaactaaaaccatcagacttgctagctctgctggtcaagtgaatggcaaacagagatatgctgntcaacagcgtgtcgtttgtgccacttgatactcctctaaactactcgactacttcaagattggcggattcagagttggaagcatacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="24427" stop="22381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24127" g_stop="24032" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="199" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="545" r_length="346" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22902" g_stop="22681" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="767" r_length="222" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E348390" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24127" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTG-TCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGA</genome_strand>
        <mrna_strand>AGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGNTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCT-AAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313974" ref_strand="+" ref_description="SGN-E313974 [cTOA-19-K12]">
      <seq>tcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaagcccgctccatcaagacaaacttgtcagcaagtggaccaaggccaaacccacaaggttcataccattacggtntgatcaacacaactaaaaccatcagacttgctagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="24363" stop="22508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24063" g_stop="24032" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="135" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="481" r_length="346" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22902" g_stop="22808" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="576" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E313974" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24063" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCT</genome_strand>
        <mrna_strand>TCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAAGCCCGCTCCATCAA..........................................................................................GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTNTGATCAACACAACTAAAACCATCAGACTTGCTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297102" ref_strand="+" ref_description="SGN-E297102 [cLEW-2-G1]">
      <seq>tgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaaaacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgttgtttcatctcgtttcacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctcctcctggtggacctaccatccaaatcgactggtcccttaatcaggcccgctccatcaggacaaacttgtcagcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23793" stop="22584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23493" g_stop="23435" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="405" r_length="346" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22902" g_stop="22884" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="424" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E297102" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23493" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGTCAGCAAGT</genome_strand>
        <mrna_strand>TGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAAAACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG..........................................................................................GACAAACTTGTCAGCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297101" ref_strand="+" ref_description="SGN-E297101 [cLEW-2-E9]">
      <seq>tgatggcatttttatttatggtcggggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtacagggaaaacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatcaagaagcaaaagaccattacatcgatggttcatctcgtgttacgactccagtcctcaccaccactgctgtacttcactatagcagctctaacacccccgtctctggtcctactcctggtggacctaccatccaaatcgactggtcccttaatcatgcccgctccatcaggacaaacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="23793" stop="22692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23493" g_stop="23435" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23338" g_stop="22993" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="405" r_length="346" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22902" g_stop="22892" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="416" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E297101" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23493" e_stop="23435"/>
          <exon e_start="23338" e_stop="22993"/>
          <exon e_start="22902" e_stop="22892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAGGTATGTTCATCTTTCAATTAGCTTATATGTGGAACGCGTTAAGTTTAATTGATTAAAACATAGCTGATAAACATTGATTGTGTTTTATAGGACAAACTTGT</genome_strand>
        <mrna_strand>TGATGGCATTTTTATTTATGGTCGGGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTACAGGGAAAACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGATGGTTCATCTCGTGTTACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTACTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCATGCCCGCTCCATCAG..........................................................................................GACAAACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281317" ref_strand="+" ref_description="SGN-E281317 [cLEL-1-L19](-)">
      <seq>tgtaatggtcttttgcttcttgattagctgtaatgaggacagagtaagattggccagcatggacatcaagtgaggaataagttgtttgcaatgtgtgtgttccctctacttcaactaatgtcatggtgtgtccttcaacgcggaaattcaatgacttttgcaatccaacgtttgatatcctcaatctataggttttccctctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="22841" stop="23642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23141" g_stop="23347" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E281317" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23141" e_stop="23347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATGGTCTTTTGCTTCTTGATTAGCTGTAATGAGGACAGAGTAAGATTGGCCAGCATGGACATCAAGTGAGGAATAAGTTGTTTGCAATGTGTGTGTTCCCTCTACTTCAACTAATGTCATTTTGTGTCCTTCAACGCGGAAATTCAATGAATTTTGCAATCCAACGTTTGATATCCTCAATCTATAGGTTTTCCCTATTACAA</genome_strand>
        <mrna_strand>TGTAATGGTCTTTTGCTTCTTGATTAGCTGTAATGAGGACAGAGTAAGATTGGCCAGCATGGACATCAAGTGAGGAATAAGTTGTTTGCAATGTGTGTGTTCCCTCTACTTCAACTAATGTCATGGTGTGTCCTTCAACGCGGAAATTCAATGACTTTTGCAATCCAACGTTTGATATCCTCAATCTATAGGTTTTCCCTCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718252" ref_strand="+" ref_description="SGN-E718252 [FC04AE10]">
      <seq>tcggccgaattgatagcaaattgcagtgctaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagctaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26892" stop="22861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26581" g_stop="26407" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="191" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="301" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="572" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="675" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23161" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="853" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E718252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26581" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCA</genome_strand>
        <mrna_strand>CAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705601" ref_strand="+" ref_description="SGN-E705601 [FA27CE03]">
      <seq>ctaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26869" stop="22865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26569" g_stop="26407" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="273" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="544" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="647" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23165" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="821" r_length="174" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E705601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26569" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTA</genome_strand>
        <mrna_strand>CTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326797" ref_strand="+" ref_description="SGN-E326797 [cTOC-25-M20]">
      <seq>cgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgntcatgctggccaatcttactctgtcctcattacagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26827" stop="22865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26527" g_stop="26407" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="231" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="502" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="605" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23165" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="779" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E326797" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26527" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTA</genome_strand>
        <mrna_strand>CGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGNTCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272931" ref_strand="+" ref_description="SGN-E272931 [cLEM-25-J12]">
      <seq>aaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgctggccaatcttactctgtcctcattacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="24591" stop="22867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24291" g_stop="24032" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="363" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23338" g_stop="23167" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="535" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E272931" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24291" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGC</genome_strand>
        <mrna_strand>AAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367201" ref_strand="+" ref_description="SGN-E367201 [cLPT-5-G3]">
      <seq>tgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgttcatgctggccaatcttactctgtcctcattacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="24504" stop="22867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24204" g_stop="24032" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="276" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23338" g_stop="23167" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="448" r_length="172" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E367201" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24204" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGC</genome_strand>
        <mrna_strand>TGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTTCATGCTGGCCAATCTTACTCTGTCCTCATTACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328548" ref_strand="+" ref_description="SGN-E328548 [cTOC-23-K20]">
      <seq>taaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaatgacattagttgaagtagagggaaccacacattgcaaacacttattcctcacttgatgtccatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="22895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26407" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="533" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="636" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23195" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="777" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E328548" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTG</genome_strand>
        <mrna_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACAC-AAATGACATTAGTTGAAGTAGAGGGAAC-CACACATTGCAAAC-ACTTATTCCTCACTTGATGTCCATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326791" ref_strand="+" ref_description="SGN-E326791 [cTOC-25-K20]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaaggacacaaaatgacattagttgaagtagagggaacacacacattgcaaacaacttattcctcacttgatgtccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="22897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="646" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23197" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="788" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E326791" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGC</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373777" ref_strand="+" ref_description="SGN-E373777 [TUS-31-I8]">
      <seq>taaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattatctgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="22971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26407" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="533" r_length="271" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="636" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23271" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="704" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E373777" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGA</genome_strand>
        <mrna_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTATCTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315808" ref_strand="+" ref_description="SGN-E315808 [cTOA-26-H6]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="22976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="646" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23276" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="709" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E315808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTG</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327308" ref_strand="+" ref_description="SGN-E327308 [cTOC-19-P17]">
      <seq>aagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26861" stop="22977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26561" g_stop="26407" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="265" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="536" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="639" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="701" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E327308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26561" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTT</genome_strand>
        <mrna_strand>AAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328134" ref_strand="+" ref_description="SGN-E328134 [cTOC-22-L18]">
      <seq>cgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattgcaaaattcattgaatttccgcgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26827" stop="22977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26527" g_stop="26407" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="231" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="502" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="605" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="667" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E328134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26527" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTT</genome_strand>
        <mrna_strand>CGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343723" ref_strand="+" ref_description="SGN-E343723 [cTOF-20-B4]">
      <seq>taaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaaggaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaagatatcaaacgttggattgcaaaattcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="22988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26407" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="533" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="636" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23288" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="687" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E343723" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGA</genome_strand>
        <mrna_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGGACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAAGATATCAAACGTTGGATTGCAAAATTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325661" ref_strand="+" ref_description="SGN-E325661 [cTOC-15-O17]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="23001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="646" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23301" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="684" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E325661" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGATTG</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E317732" ref_strand="+" ref_description="SGN-E317732 [cTOA-30-C13]">
      <seq>ctaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatgggtgtacattcacagtcgatcaagggaaaacctatagattgaggatatcaaacgttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26869" stop="23003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26569" g_stop="26407" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="273" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="544" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="647" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23303" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="683" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E317732" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26569" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGAT</genome_strand>
        <mrna_strand>CTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGGTGTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGATTGAGGATATCAAACGTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323204" ref_strand="+" ref_description="SGN-E323204 [cTOB-28-K23]">
      <seq>gtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaacctatagattgaggatatcaaacgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26859" stop="23004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26559" g_stop="26407" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="263" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="534" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="637" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23304" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="671" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E323204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26559" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTGAGGATATCAAACGTTGGA</genome_strand>
        <mrna_strand>GTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GG-AAACCTATAGATTGAGGATATCAAACGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301362" ref_strand="+" ref_description="SGN-E301362 [cLEW-24-J5]">
      <seq>tgattaatggtcaattacctggtcctgatatcaacttagacaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacaaaagaaactcatttgtacatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaatgatcaaataaggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaagcctataatccccatcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttggaagcaattcttatcaatggacgtggtcctaatggtgttacattcacagtcgatcaaaggaaaacctatagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26591" stop="23022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26291" g_stop="26189" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="374" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24031" i_stop="23499" i_length="533">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23498" g_stop="23435" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="438" r_length="64" r_score="0.844"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23338" g_stop="23322" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="455" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E301362" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26291" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23498" e_stop="23435"/>
          <exon e_start="23338" e_stop="23322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGATTG</genome_strand>
        <mrna_strand>TGATTAATGGTCAATTACCTGGTCCTGATATCAACTTAGACACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAAAAGAAACTCATTTGTACATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAATGATCAAATAAGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAAGCCTATAATCCCCATCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGGAAGCAATTCTTATCAATGGACGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAA................................................................................................GGAAAACCTATAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E315266" ref_strand="+" ref_description="SGN-E315266 [cTOA-24-G4]">
      <seq>gctaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtcgtggtcctaatggtgttacattcacagtcgatcaagggaaaacctataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26870" stop="23025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26570" g_stop="26407" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="274" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="545" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23435" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="648" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23338" g_stop="23325" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="662" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E315266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26570" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23435"/>
          <exon e_start="23338" e_stop="23325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAGGTAAAAAGAACGATGAATCAACGTATTAAGGACATTTCGTAGCCTGATGTCATGACATTTCTGAAAATCTAACTGAGATTTTTTTTCTTGTAATAGGGAAAACCTATAGA</genome_strand>
        <mrna_strand>GCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG................................................................................................GGAAAACCTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318138" ref_strand="+" ref_description="SGN-E318138 [cTOA-29-P12]">
      <seq>aagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26861" stop="23171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26561" g_stop="26407" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="265" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="536" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23471" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="603" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E318138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26561" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTC</genome_strand>
        <mrna_strand>AAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316270" ref_strand="+" ref_description="SGN-E316270 [cTOA-23-D2]">
      <seq>taaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaatggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="23171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26407" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="533" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23471" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="600" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E316270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTC</genome_strand>
        <mrna_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367591" ref_strand="+" ref_description="SGN-E367591 [cLPT-7-N8]">
      <seq>tttttagtggtattaattgggaattctgttgtagcacaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattcttatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26814" stop="23175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26514" g_stop="26407" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="218" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="489" r_length="271" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23475" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="552" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E367591" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26514" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAAT</genome_strand>
        <mrna_strand>TTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCACAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200160" ref_strand="+" ref_description="SGN-E200160 [cLEB-7-P24]">
      <seq>gcacgaggtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtggcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcatgcctagaaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggaccttgaaagcaatttcttgactgaggcaggaagttacctttccctgatggcattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26865" stop="23181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26566" g_stop="26407" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="270" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="542" r_length="272" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23481" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="601" r_length="59" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E200160" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26566" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAG-AATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGA-CTTGAAAGCAA-TTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTT</genome_strand>
        <mrna_strand>GCACGAGGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTGGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCATGCCTAGAAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTTGAAAGCAATTTCTTGACTGAGGCAGGAAGTTACCTTTCCCTGATGGCATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214540" ref_strand="+" ref_description="SGN-E214540 [cLEC-79-E18]">
      <seq>aaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattangattctcagcaggcctagagtccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgacggaggcaggaagttacctttccctgatggcattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26857" stop="23181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26557" g_stop="26407" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="261" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="532" r_length="271" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23481" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="589" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E214540" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26557" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTT</genome_strand>
        <mrna_strand>AAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTANGATTCTCAGCAGGCCTAGAGTCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316582" ref_strand="+" ref_description="SGN-E316582 [cTOA-25-D2]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttngaagcaattcttgacggaggcaggaagttaccttttcctgatggcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="23182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23482" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="599" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E316582" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCT</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTNGAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTTCCTGATGGCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355663" ref_strand="+" ref_description="SGN-E355663 [cLHT-1-E9]">
      <seq>gcaacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaatcacacggacttgaaagcaattcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26870" stop="23217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26570" g_stop="26407" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="273" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="544" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23517" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="565" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E355663" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26570" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGAC</genome_strand>
        <mrna_strand>GC-AACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAATCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364842" ref_strand="+" ref_description="SGN-E364842 [cLPT-4-M22]">
      <seq>cataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26865" stop="23217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26565" g_stop="26407" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="269" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="540" r_length="271" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23517" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="561" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E364842" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26565" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGAC</genome_strand>
        <mrna_strand>CATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329643" ref_strand="+" ref_description="SGN-E329643 [cTOD-3-M14]">
      <seq>taaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagcaattcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="23217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26407" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="533" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23537" g_stop="23517" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="554" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E329643" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
          <exon e_start="23537" e_stop="23517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACGGTAATTGACTCAGTATATAAAAGTTAAATTCGAACCTTTGCATGTACCTTATGGTTGTCTAATCACTAATGTCTTAAGAGTGTCGGTAAGGTAAAGTGGCTAGTTTTTGTTTGGGTTGCATTTTTTGGAATTTAGTGTGCTTTTTGTCATGGGCCATTGTTTGTTGGGTTTGTCCTTGACCCAAATATGGGCCCATTAGTAGACAACAACTGTAAAGTGCACGTTTTTTTTTATAAAAAAAGTGGTAGATATCACGTGGAATTAGTCGAGACGTGTGAAAACTGATTTGACAACCACGGCCATCAATAACAAAAATCTTTCTTAGAGCAGAGTTATGTGATTTCTAGATTTGTAATTGAAGGGCTATGACTATTGTTTTGAAAAGAAAATGTGGATTTATAAGTTTGAGTGAAAGAGTTAAATGGAATAAATTTTAGCCAAAGTTTTGTGATAGAAACTCAAATTTATTTGTTATCGAATTTCGTTGTATACAGGACTTGAAAGCAATTCTTGAC</genome_strand>
        <mrna_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGAAAGCAATTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359015" ref_strand="+" ref_description="SGN-E359015 [cLHT-11-C23]">
      <seq>caacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccctcctcattggagattggtacaaaaagaatcacacggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26867" stop="23725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E359015" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG</genome_strand>
        <mrna_strand>CAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCCTCCTCATTGGAGATTGGTACAAAAAGAATCACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367176" ref_strand="+" ref_description="SGN-E367176 [cLPT-5-N14]">
      <seq>caacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaaccacacggacttgaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26867" stop="23724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="543" r_length="271" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E367176" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG</genome_strand>
        <mrna_strand>CAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357196" ref_strand="+" ref_description="SGN-E357196 [cLHT-17-P6]">
      <seq>gaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaatcacacggacttgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26851" stop="23724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26551" g_stop="26407" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="255" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24032" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="526" r_length="271" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E357196" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26551" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG</genome_strand>
        <mrna_strand>GAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAATCACACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306059" ref_strand="+" ref_description="SGN-E306059 [cLEY-13-I9]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtcgcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcgggcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccgataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtatctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttgcggaccctgcaaacgactacaccatcctcattggagattggtacaaaaagaaccacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="23733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24033" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="542" r_length="270" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E306059" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACAC</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTCGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGGCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCGATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTATCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTGCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358969" ref_strand="+" ref_description="SGN-E358969 [cLHT-24-N9]">
      <seq>taaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcatttgtagatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggtttcggagggattaggattcttagcaggcctagaatccccgtcccttttccggaccctgcaaacgattacaccatcctcattggagattggtacaaaaagaatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26858" stop="23734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26558" g_stop="26407" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="262" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24034" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="531" r_length="269" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E358969" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26558" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACA</genome_strand>
        <mrna_strand>TAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTCGGAGGGATTAGGATTCTTAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGATTACACCATCCTCATTGGAGATTGGTACAAAAAGAATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208299" ref_strand="+" ref_description="SGN-E208299 [cLEC-37-N4]">
      <seq>agtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcnttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaataaggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26855" stop="23752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26555" g_stop="26407" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="259" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24052" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="510" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E208299" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26555" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATT</genome_strand>
        <mrna_strand>AGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCNTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAAGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202067" ref_strand="+" ref_description="SGN-E202067 [cLEC-7-L10]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgaaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttttccggaccctgcaaacgactacaccatcctcattggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="23755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="271" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24055" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="519" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E202067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAG</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGA-AATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322937" ref_strand="+" ref_description="SGN-E322937 [cTOB-30-I4]">
      <seq>ataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattangattctcagcaggcctagaatccccgtccctttttcgnngacctgcaacgactacaccatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26864" stop="23764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26564" g_stop="26407" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="268" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24064" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="507" r_length="239" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E322937" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26564" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGA-CCCTGCAAACGACTACACCATCC</genome_strand>
        <mrna_strand>ATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTANGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTTCGNNGACCTGC-AACGACTACACCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277960" ref_strand="+" ref_description="SGN-E277960 [cLER-4-C8]">
      <seq>taacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattatctgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggttttggagggattaggattctcagcaggcctagaatccccgtcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26868" stop="23793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24093" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="482" r_length="210" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E277960" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTT</genome_strand>
        <mrna_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTATCTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334521" ref_strand="+" ref_description="SGN-E334521 [cTOD-23-P15]">
      <seq>ataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagctgctggtggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26864" stop="23837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26564" g_stop="26407" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="268" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24137" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="434" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E334521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26564" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTT</genome_strand>
        <mrna_strand>ATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366150" ref_strand="+" ref_description="SGN-E366150 [cLPT-15-P10]">
      <seq>caacataaagtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatttatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacagaacaggagaaactcattcgttgatggagtatatggaacaacatgcccaatacccccagggagaaataacacattcaatctacaagtgaaggatcaaatagggagtttctattacttcccatctcttgcattccacaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26867" stop="23849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26568" g_stop="26407" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="272" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24149" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="426" r_length="154" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E366150" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26568" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCT</genome_strand>
        <mrna_strand>CAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATTTATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAGAACAGGAGAAACTCATTCGTTGATGGAGTATATGGAACAACATGCCCAATACCCCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280112" ref_strand="-" ref_description="SGN-E280112 [cLEL-7-P22](-)">
      <seq>gcacgaggtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtattaattgggaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccgccagggagaaataacacattcaatctacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26865" stop="23903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26566" g_stop="26407" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="270" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24203" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="370" r_length="100" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E280112" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26566" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTG</genome_strand>
        <mrna_strand>GCACGAGGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277899" ref_strand="-" ref_description="SGN-E277899 [cLEL-5-J9](-)">
      <seq>gcacgaggtaaagtagaaaaatatgttgccgctaaaattcgccgtagcggtgtttttagtggtatcactcgcgaattctgttgtagcagaagatccttatagatatttcgattggaatgtcacttatggaactatatatcctctcggagttcctcaacagggaattctgattaatggtcaatttcctggtcctgatatcaactcggtcaccaatgacaatctcgttatcaatatccacaacagcttggatgaaccttttctactttcctggaacggagtacaaaacagaagaaactcatttgtagatggagtatatggaacaacatgcccaataccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26865" stop="23936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26566" g_stop="26407" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26298" g_stop="26189" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="270" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24302" g_stop="24236" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="337" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E277899" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277899" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26566" e_stop="26407"/>
          <exon e_start="26298" e_stop="26189"/>
          <exon e_start="24302" e_stop="24236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAGGTTCGTTTCTGTAAATGCAATGTATTTTTTTTTTATATTATATATGGATCTGGGTTTATTAGATCAATATGCTTATGTAACGGTGAAATTTATGTTATGTTTGTATAGGGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTGGTAATTCACTGAAACTTCCATTTTTCTGTTCACATTTAGTGCGTTGCGTTGATTACGTTGAAGATCACTAATCACATTTGATGGACTCGTGATAAACTTAACTGTATCAATTTCCAAAAAAACAAGGATAGCTACATAGGAATAATTTTTGGGTAATTTCCAGTTTGTTTCTGGGTTATACAATTGGCAAGTGCATTGGTTTGGGCAAATCTGTCTGGTTAATACGGTTCTGCAGCCAAATCTTTCTATAATAAGTTACATTTTTCAAAACAAATTGGCTCTAGATCCTGAATTCGTCTTTGTTTATCGCCTTTTTTACAAGAGACAGATATAAGATTTCGTGATCAGTGGATGTAGAATATCAGTATGTAATTGCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAAAAATACCACATGGGGTTTGACATCAACATTTTGCAAGTCTCGTCGGAATCTTCGTGGCCTTTTCCAAATTCACACGCTACGAATCAATTTTAGCTATTTTTGGGCAGCAGCTTAATTAGTTAGTTATCCAGCTGTATAATTATTAACAACTTGTTTTCCAATTGTCATTCTAGACTAAGCAACAATAATCTGATCGAAATTGCGTCACTCTTCATGAAAATAAAAGTCCCATATGTTCACAGTTGAAGCATAGATGACATTGATACAATATGAGCTCAGACTCAGTATATATTTTAATAACATGATGAAAGAATTGAATTTCAACATAGCACAATTTTATAAATTAGCTCATTAGAAGTCGTGATGATAAAAAGTTGTTGGTAAAGAGCATTATACCACTTATTAATTTGTTTACATAATTTAAATTAGTTAAATTAATAAATTTTGAGAACGGACAGAAAAAATATATAAGGTGAATTGTTTCACATAATATATACAGAATCACATGGTTTCGTTGGGCCTGCTGAATAAATGATTAGGTGTTGAAAATTTTTATTGAATATAACTAGTCGGTGGGTCATGTGAAATGCATGTGAAAAGTAGATGCAAATTCTGCGTCTCGTGCTTTGTCCATTGAATTATTTTAAATAGTCGAAAACGACGTTTGTTTTCATGTTCAGTTTTACATATTCTTTTATATGTATAATGTCTGTTAAAAAATAATTTGAAGAATAAATAATTTATGTTGAAGGATAAAACATGTAAAACGTATGCATGTTCACATATTATCAATTATCATAATATCCATATTCAATTTCTTTATTCCACTTAAAATAACGATAAAATAATATTTTTCCTACTTAAAACGTCTGCATGTTTTCTTATTATAGTCCATTTTGTGAATTATCTCATCTAAAAATTTAAATTAACGTCTTATCATCTCGAAATATACGTGTAGGAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCG</genome_strand>
        <mrna_strand>GCACGAGGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATCACTCGCGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG............................................................................................................GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228528" ref_strand="+" ref_description="SGN-E228528 [cLED-3-L16]">
      <seq>gctggtttgtatagatctacattttaaaaacagaaaataataaaaaatgacatgtaaaattgaataaaaatgtctaccagttactaatcctggaggacatttttgttcaaagagcaaaaacagagtctagtttgatatttaggggtcccttttttctttttttgattccttctgattttagccgattcttgcgtcatttaaaataaaaaactttagtagtactagcgaataagtttaaaattgatgaactgtgtcatacatgttaacaacagttttgtatatttgatctaaaaattgaatgtttcggtgaccgcaaactatttcggtgcgtaaaaaaaaaacttatacaacataacagcaaatcccgtataattgcataaacaaaaatataataagtgaataacttaggaagagagcaattttctaaaaattctcaacaaaaactaggtagtattggaattattaattttgtggctttggtaagatttggacgacaagttgacaagttccacttgactattgctggcttctactgacaaagaattgagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="26114" stop="24961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25814" g_stop="25261" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E228528" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25814" e_stop="25261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAA</genome_strand>
        <mrna_strand>GCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTGATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAGCAAATCCCGTATAATTGCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTAATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATTGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355245" ref_strand="+" ref_description="SGN-E355245 [cTOS-18-K24]">
      <seq>aaagatttggctgcagaaccgtattaaccagacagatttgcccaaaccaatgcacttgccaattgtataacccagaaacaaactggaaattacccaaaaattattcctatgtagctatccttgtttttttggaaattgatacagttaagtttatcacgagtccatcaaatgtgattagtgatcttcaacgtaatcaacgcaacgcactaaatgtgaacagaaaaatggaagtttcagtgaattaccaggaaagtagaaaaggttcatccaagctgttgtggatattgataacgagattgtcattggtgaccgagttgatatcaggaccaggaaattgaccattaatcagaattccctatacaaacataacataaatttcaccgttacataagcatattgatctaataaacccagatccatatataatataaaaaaaaaatacattgcatttacagaaacgaacctgttgaggaactccgagaggatatatagttccataagtgacattccaatcgaaatatctataaggatcttctgctacaacagaattcccaattaataccactaaaaacaccgctacggcgaattttagcggcaacatatttttctactttactttatgttagcactgcaatttgctataataaggaaaacagagtggaaatagaaggattttaaaagaaaaaagagtgggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="25644" stop="26941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25944" g_stop="26641" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E355245" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355245" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25944" e_stop="26641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTTGGCTGCAGAACCGTATTAACCAGACAGATTTGCCCAAACCAATGCACTTGCCAATTGTATAACCCAGAAACAAACTGGAAATTACCCAAAAATTATTCCTATGTAGCTATCCTTGTTTTTTTGGAAATTGATACAGTTAAGTTTATCACGAGTCCATCAAATGTGATTAGTGATCTTCAACGTAATCAACGCAACGCACTAAATGTGAACAGAAAAATGGAAGTTTCAGTGAATTACCAGGAAAGTAGAAAAGGTTCATCCAAGCTGTTGTGGATATTGATAACGAGATTGTCATTGGTGACCGAGTTGATATCAGGACCAGGAAATTGACCATTAATCAGAATTCCCTATACAAACATAACATAAATTTCACCGTTACATAAGCATATTGATCTAATAAACCCAGATCCATATATAATATAAAAAAAAAATACATTGCATTTACAGAAACGAACCTGTTGAGGAACTCCGAGAGGATATATAGTTCCATAAGTGACATTCCAATCGAAATATCTATAAGGATCTTCTGCTACAACAGAATTCCCAATTAATACCACTAAAAACACCGCTACGGCGAATTTTAGCGGCAACATATTTTTCTACTTTACTTTATGTTAGCACTGCAATTTGCTATAATAAGGAAAACAGAGTGGAAATAGAAGGATTTTAAAAGAAAAAAGAGTGGGTTCT</genome_strand>
        <mrna_strand>AAAGATTTGGCTGCAGAACCGTATTAACCAGACAGATTTGCCCAAACCAATGCACTTGCCAATTGTATAACCCAGAAACAAACTGGAAATTACCCAAAAATTATTCCTATGTAGCTATCCTTGTTTTTTTGGAAATTGATACAGTTAAGTTTATCACGAGTCCATCAAATGTGATTAGTGATCTTCAACGTAATCAACGCAACGCACTAAATGTGAACAGAAAAATGGAAGTTTCAGTGAATTACCAGGAAAGTAGAAAAGGTTCATCCAAGCTGTTGTGGATATTGATAACGAGATTGTCATTGGTGACCGAGTTGATATCAGGACCAGGAAATTGACCATTAATCAGAATTCCCTATACAAACATAACATAAATTTCACCGTTACATAAGCATATTGATCTAATAAACCCAGATCCATATATAATATAAAAAAAAAATACATTGCATTTACAGAAACGAACCTGTTGAGGAACTCCGAGAGGATATATAGTTCCATAAGTGACATTCCAATCGAAATATCTATAAGGATCTTCTGCTACAACAGAATTCCCAATTAATACCACTAAAAACACCGCTACGGCGAATTTTAGCGGCAACATATTTTTCTACTTTACTTTATGTTAGCACTGCAATTTGCTATAATAAGGAAAACAGAGTGGAAATAGAAGGATTTTAAAAGAAAAAAGAGTGGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349137" ref_strand="+" ref_description="SGN-E349137 [cTOS-2-F8]">
      <seq>tcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagtctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagttttttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggattttggagacttcatcttgacctggagtgttaaatttgaagccttttatcttcagatatcttaatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34250" stop="33363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33950" g_stop="33654" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E349137" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33950" e_stop="33654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</genome_strand>
        <mrna_strand>TCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354016" ref_strand="+" ref_description="SGN-E354016 [cTOS-16-K11]">
      <seq>tcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagtctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagttttttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggattttggagacttcatcttgacctggagtgttaaatttgaagccttttatcttcagatatcttaatttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34250" stop="33363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33950" g_stop="33654" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E354016" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33950" e_stop="33654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</genome_strand>
        <mrna_strand>TCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711670" ref_strand="+" ref_description="SGN-E711670 [FB02CE12]">
      <seq>cgctggggtcgaatttgtaaaccggccgaagtcaacctcccccgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagtctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagttttttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggattttggagacttcatcttgacctggagtgttaaatttgaagccttttatcttcagatatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34497" stop="33370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34199" g_stop="33662" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E711670" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34199" e_stop="33662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCAC</genome_strand>
        <mrna_strand>CGCTGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCCCGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288681" ref_strand="+" ref_description="SGN-E288681 [cLES-8-E19]">
      <seq>cggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagtttgttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggatttttggagacttcatctcgacctggagtgttaaatttgaagccttttatcttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34417" stop="33376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34117" g_stop="33669" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E288681" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34117" e_stop="33669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGA-TTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAAT</genome_strand>
        <mrna_strand>CGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTGTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTTGGAGACTTCATCTCGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E541025" ref_strand="+" ref_description="SGN-E541025 [TUS-61-J16]">
      <seq>ccggggtcgaatttgtaaaccggccgaagtcaacctcccgtgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagtttgttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggatttttggagacttcatctcgacctggagtgttaaatttgaagccttttatcttcagataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34497" stop="33376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34197" g_stop="33677" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="537"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E541025" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34197" e_stop="33677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGA-TTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGAT</genome_strand>
        <mrna_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTGTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTTGGAGACTTCATCTCGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548481" ref_strand="+" ref_description="SGN-E548481 [TUS-61-J16](-)">
      <seq>ccggggtcgaatttgtaaaccggccgaagtcaacctcccgtgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagttgagtttgttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataatttgggatttttggagacttcatctcgacctggagtgttaaatttgaagccttttatcttcagataaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34497" stop="33376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34197" g_stop="33677" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="537"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E548481" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34197" e_stop="33677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGA-TTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGAT</genome_strand>
        <mrna_strand>CCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTGTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTTGGAGACTTCATCTCGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293530" ref_strand="+" ref_description="SGN-E293530 [cLET-15-P18]">
      <seq>cggggtcgaatttgtaaaccggccgaagtcaacctcccgtgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagtgagcccactggtgcctttgcttcccgtcttcgccgactctttggtgatgaaagctgaaacagctgagtttgttgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattctataatttgggatttttggagacttcatctcgacctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34496" stop="33408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34196" g_stop="33708" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E293530" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34196" e_stop="33708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGA-TTTTGGAGACTTCATCTTGACCTGGA</genome_strand>
        <mrna_strand>CGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGACTCTTTGGTGATGAAAGCTGAAACAGCTGAGTTTGTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTCTATAATTTGGGATTTTTGGAGACTTCATCTCGACCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300639" ref_strand="+" ref_description="SGN-E300639 [cLET-45-L7]">
      <seq>tcgaatttgtaaaccggccgaagtcaacctcccgtgatggctatccctgcaccaccatcgagctccgccgttcccggcggttatcagaaatctaagagatcgttaggtttctttgcaaacgcaatgaagaggaaagatagctttttacaattcttcgccatgacaggaattcttcttctgagtatgagatcgcttgggcaaaagtaccgcataaacgacctcgaggaggataacgccgcgctcaaggaagaacaagaagggctcgttcaccgaatgaaccatatcaagcaaagcctacttgctgaagctgctagagagcccactggtgcctttgcttcccgtcttcgccgcctctttggtgatgaaagctgaaacagctgagtttgctgttctgtctgagtttgtatttcatatatatgtccaatattagcagaatttatagattttataattcgggatttttggagacttcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="34491" stop="33417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34191" g_stop="33716" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E300639" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34191" e_stop="33716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGA-TTTTGGAGACTTCATCTT</genome_strand>
        <mrna_strand>TCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGCCTACTTGCTGAAGCTGCTAGAGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGCTGAGTTTGCTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTCGGGATTTTTGGAGACTTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313102" ref_strand="+" ref_description="SGN-E313102 [cTOA-14-H24]">
      <seq>tcgattgtggtgacccggatacccataaacccatctccgtttcagctggagctctggtggcgtcgcggctacaagccggataaataaattctagatccttctggaatgttataacgagctggcaaatattagattcgacccgatttcccctccggttcacatttcgtcattcagctaaatctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgtgtaagtttccgtcgttatctctccggtagaatcatgctatgaattttaatctgttgaaaatcaatcgtaaattaggttaaaaatgtttttatgttgtttgattcgtatgaatagaattatacatttaatcctctcttgtttccatgatgtctacaaagttttgatggttactagtcagttttgccgccagtttcctcaacattttatccaagaaaatgaggggaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37046" stop="38125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37346" g_stop="37825" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E313102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37346" e_stop="37825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTGTGGTGACCCGGATACCCATAAACCCATCTCCGTTTCAGCTGGAGCTCTGGTGGCGTCGCGGCTACAAGCCGGATAAATAAATTCTAGATCCTTCTGGAATGTTATAACGAGCTGGCAAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAG</genome_strand>
        <mrna_strand>TCGATTGTGGTGACCCGGATACCCATAAACCCATCTCCGTTTCAGCTGGAGCTCTGGTGGCGTCGCGGCTACAAGCCGGATAAATAAATTCTAGATCCTTCTGGAATGTTATAACGAGCTGGCAAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236004" ref_strand="+" ref_description="SGN-E236004 [cLED-16-I22]">
      <seq>aaatattagattcgacccgatttcccctccggttcacatttcgtcattcagctaaatctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgttaagtagaatcattaaaggcatcaagaagatgcaagctttacaaggatagcttagtcgagctcacaaaaacaaggatttgtagcttcttcctaaactatagagctaagaatatccaagaagagttctaaattatttacaagggtcaatctggatcagctgaaaaggctaactacacatctgcttctcaaaagttttgtagaagttgaaattccatcaaaacattgtttcttccgtttgtccataaacaccaaaagagagcaccaggatcatcacccaaatagtcttgatggctttgtcaacttcccaagaactccaactttcaagagcattcctattagagaaaggcatgacccataaaacagcaaaactatttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37169" stop="39191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37469" g_stop="37596" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38515" g_stop="38891" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="505" r_length="377" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E236004" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37469" e_stop="37596"/>
          <exon e_start="38515" e_stop="38891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAA</genome_strand>
        <mrna_strand>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATTCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235933" ref_strand="+" ref_description="SGN-E235933 [cLED-16-J6]">
      <seq>aaatattagattcgacccgatttcccctccggttcacatttcgtcattcagctaaatctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgttaagtagaatcattaaaggcatcaagaagatgcaagctttacaaggatagcttagtcgagctcacaaaaacaaggatttgtagcttcttcctaaactatagagctaagaatatccaagaagagttctaaattatttacaagggtcaatctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37169" stop="38968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37469" g_stop="37596" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.733" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38515" g_stop="38668" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="282" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E235933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37469" e_stop="37596"/>
          <exon e_start="38515" e_stop="38668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGAT</genome_strand>
        <mrna_strand>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240408" ref_strand="+" ref_description="SGN-E240408 [cLED-25-N3]">
      <seq>ctacccgatttccccttcggttcacatttcgtcattcagctagatctctggccaaagatgacgccattcactctccttggctccttccgatctcaatctccggtgaactcctgcgttaagtagaaccattaaaggcatcaagaagatgcaagctttacaaggatagcttagtcgagctcacaaaaacaaggattggtagcttcttcctaaactatagagctaagaatatccaagaagagatctaaattatttacaagggtcaatctggatcagctgaaaaggctaactacacatctgcttctcaaaagttttgtagaagttgaaattgcatcacaacattgtcccttgcgtttgtccataaacaccaaaagagagcaccacgatcatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37181" stop="39089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37481" g_stop="37596" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.733" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38515" g_stop="38789" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="391" r_length="275" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E240408" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37481" e_stop="37596"/>
          <exon e_start="38515" e_stop="38789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACC</genome_strand>
        <mrna_strand>CTACCCGATTTCCCCTTCGGTTCACATTTCGTCATTCAGCTAGATCTCTGGCCAAAGATGACGCCATTCACTCTCCTTGGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTAGAACCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTGGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGATCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTGCATCACAACATTGTCCCTTGCGTTTGTCCATAAACACCAAAAGAGAGCACCACGATCATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E740435" ref_strand="+" ref_description="SGN-E740435 [LC21BG03]">
      <seq>cgttattcagctaaatctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgtgtagttgttgtttctgaagtcttcatggctgatcagcaagcagttgaagggtcaagtacaagtaatgattctggtggaagttctgaatcaaccgtggttctcaacatcaagaccttagattcccagacctatacttttaacgtggataagaatttgcaagtttcagccttgaaggacaaactagcaagtcagattggtgtacctgttgagcagcagagactaatttttaggggcaaggtcttgaaggataatcaccttctttctgaatattatgtggaaaatggggacacactacatttagtgctgaggcagtctcaattgcaagctccatcaggtggtagcagtggcgaagctactactaacaatgttaacagaggacaagagcctcaacccactgctggtggctcacggaatcgtatcgggcagatttcacacagtgttgtccttggaacttttaatgttggagatccgggggaaggacttgtgcctgatcttaatcgggttattggggcagttttgaacactgtagggatcgggaacatgaccggtggacagcttcctggtgtgcaggccagcactccagctcctcgccctcaaggaaatgagagtttaagtcagtcaggaagtcagcaatctgggcaggcattttctggtcaatctttgccgcaagtagtgcaaattcctctgggggcagcaatagctgtcccctcaattaatttgcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37210" stop="43732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37510" g_stop="37596" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40983" g_stop="41135" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="240" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41456" g_stop="41573" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="358" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42527" g_stop="42631" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="463" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.462" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42744" g_stop="42868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="588" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42961" g_stop="43029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="657" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43283" g_stop="43432" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="807" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43524" g_stop="43529" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="813" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E740435" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37510" e_stop="37596"/>
          <exon e_start="40983" e_stop="41135"/>
          <exon e_start="41456" e_stop="41573"/>
          <exon e_start="42527" e_stop="42631"/>
          <exon e_start="42744" e_stop="42868"/>
          <exon e_start="42961" e_stop="43029"/>
          <exon e_start="43283" e_stop="43432"/>
          <exon e_start="43524" e_stop="43529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAAAGGTCTGATGCAATCGAGCAGTGCAGTAGCTAGTGGTGGACGCTTTCTGTGTGCTTGTGGCTGAAGTAGCATCAGATGGCTAGCTGGAATTTCTTTTTTGGGGAGATTATTCTGTGTGATACTTTTTTTACTGAACTTAAAGCTCTAGCTTCTGTATGACCTTACGTGTAGTGTCATTGAGGATTAGAACTTTGATTCAACTTTTGGATTTGAGATACTGGAATTTCATATGTATTGCGACCTAGCCAATGGAAGCTGTATTCATATTTATCACTTGGTCTTAGGCTTGATTCTGGGAACTGCTGTCCCATCACCATTTAGATATTGCAATTCCTCATAGCAGATCACTTATAAGATCAACAGGGCAGGTTCCATGGACTAAAAGATATTGTAGGAGCTCACAACGGTCCATTTGTAGGTTAGGCTATCTAGCCTGTAAACCATTGTTTAGATATGTCAATAACTCATAAATGAAGCCCCAGCTGAGACATAAATGTTGAACATTTACTTATAAAAAGATAAAAGTTGAACATTTAGAGATCATATAGAAAGTACCATTTCAAATGATTGTATTATGAATTTACTTGTCTTTGTTAAAGATCCATTGTTTCGTCTCTTGAGAAGCAATAAAAACAAGATTAAAGGAAACAAGTGCTAACAGTATTGAAAAGGAAAGCATAACTAAAGAAATTGCGTAATTTCTCTCTCAAAAAAGAAATTGCCGGCCATGGTTATAAATTGCAAACTTAAGCTGTATGGGCACATCATATGGTGTACCCTAGTTTCCAAACACAATTGGCATGTAGGATAAGATTTCACTGTCTTATGACCTGAATAAATTAATGTATAATATCTGCTGCTTTTTTCTTGACCTGTGAGAGTGAAAGTTGCGTTCAAGGGATTGCCTGGCCTTCACTGAAGTCCAAAACCAATTACAAATATGCTGACAGTTGAGCTATAGAAAAGTGTGTATGAAGTTACAACAATCAGTATGTTCTCTTAAAAAGCTATTGGTAAATGCCAAGAGAATCCCCATCTTCTATGGGTTTGGTTGAACAACAAAGGTTGTGAAATGTGGAATGCAAAATGTGCCAAGTTTTATATTTAAGTGGAGAAGAGCAGATGTACAAGCCCATTATCCCCAAATTTCTCGGTCACAAAAAAAAAAATTAACAATAGAGTCTACAGACAATGCCACTATATTTATTTCATTAGTCCTTTGTTTGTGGTTCTGTGCAATTCTACATATTTACTTGCCACAACTATGCCAACATTAACTTGACATGAGTGAAACAAGGATGCATCTTAAAAATTCAAGTGTTGTCTGCAATCAAAGGCAGAGTGGATTTTTAGATTTGAATGGAAACAAAATTATTCTTTTTAAAACATAATACATTTGAATGGAAATAAATGTTGGAGGAGGGAATGGGAGGGGGTGAGAGAAAAGTTGGTTAGTGGATTTTTCTTTTTTGACATGATCTCATGTAGGTTGAGGATTGATGTGCATCTCGGGTTTATGATTTTCCGGGCTTCAACGTTCCCTTGTTGCTGGCTTTACATCACTGATATTCTTACAGTACCTACAAAAAAAGATTTGGGCTTCACCTTGGTATTAAAGGATGTGCAAAACAATTCTTCTTTTCATTCATGATTTTGCCATCCTTGGTCATTTTTATATTATTCCAAATGGATTCGTTTCTAAATTGTTCGAGTTTTAGTTTATTTTGCTTCTTTTTTGAGGTGGGTGGGGGGTGAGGGTGCATGTGGGAGGGTAAGGTTTTTTTTTGCTGCTAATTATGCTTTGTTGAATATTCTATCTTTGCTGCTCATGAATCTATATGTGTGATTTGTGTATTGTTAACTTCTCAAAAAAAAAAAAAAAGAATGAATGATTTGCATATTGACGGGTCTAGGCCTTCATTTAAAATATGTGGGTGGATGGTCTACCTTCCTGCCAAGGAGTTTTGGTTTTGCAGTTGCTCCTTGGTGATAGTTTGTCTCAACTATTTTGCACAGTGCTCTATAAATGCTTACCATCCATCAGAGTTTTCTCTTCAGGTAGTTGTTGTTTCAGCAGAGTTTTCTCTGCAGGTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAATGTAAATTTTGTTACTTACTCTGTTTCTGTTGTGGGTTATGCTGAAAAAGAGTATTTACTACCATGCTTGTTCAGTTACATGCAGAGCTTTCTTAAATTTATGCTACTTCTGAAAAGTGATTTTTCCCCCTTTATTCTTGTTAGAAATAATATATTGAAACGTAGAGACCTTTTCTCGAATAAAAACTTATTGATATGAAGTTAAAATGTGGATTTTAGCACTTGGAGTCTTTTATCAATCACGTGCACTGTACTTCTCTGATACATCTCTTATTTGGAACTCATTGTCTACTTTACTTCTCTACCATGTCTCAATCTCAGTTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATTGTATCCTATCAACTGAGGATTTCAAGTTCCCCCCTCATTTTGTCTGCAGTTCGAGCACTCTATGCTGGAAATATTTCTTCTCTTTAAATTTGTTGGTCAGAGTTTTCTGTTAGATGTTTGTATATGTGTGTTTAGCTCCTTACATCTCTATTGAGGTAATTTCCAGGATTTCATCATTTCACATAAGCTTGTCCTACCTTTTCTGTTTCAAAACTGATAGCTGATTTTTAAATGCTTTGAAATTTTCTGAACTGATTCAGAAAGAAGCTCTAACTTGTGGTCATTGAGGGTGAAGTACACTGGAGTTCATGAGAATATACAAGTTTTGAACATAATTTGAAGTAGTTTTTCTTTAAACTGAAAACCCCTTCAAGTGAGATTACACAACTGCCACAAACCTGAACTGGGTCATAGTTTGAAACTCAGTTGATAATGAGCTCTCCCTCTACTCTCCGCTTAAATATTAGGCTTATTGTCTGCGGAAGGCCTCAAACGCATGACATATGCCTTATGTAGAAACCAAGAGTTGGGATGAATATAATGGAGAATTAGGTCTCTGTCTGCTTGTAATATTAATCTCCAGAGGGTAATACTTGTTGACTTTTGGTAATGCCACAAACCTAAATACCTCAAGATATCATATGCAACAAACCTAAATACCTCTAGATATCATATCTCGCTGATCCTTTACCCTGGTCATCTAGAAGGGTGTCCATGTTGGTTAGTAAGCTCAGTGAGTTGTTTCCAACTAACAAATGGATTGGTTTCTCACCTCTTAAGTCCTATCATGTCTATGATTAATTTTAGAGAGTTATCTTTGACCACCACATTAGTTGATACTTAAATGTTTTGTTTATACAACTTCACATGATTAGATGTAATATTTTCGCAAAAAATGGAGCCTCTTTCATCTTCAACTTTTGGGTTTCTTGCCAAAGCTTAACTCTTTCCAGATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAGGTAAAGGCTTCGTGATCTGAAATTTAGGCTCTCAGGTCATTTGGCTGATTTGTTAGTCAGAGGTGTAACAAAAAAGAGGTAACGAACAATTTATTATCTTTGAGTATCACAGGACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGGGTGGGTTGCATAGAAGTTGCAAGATTTTTTAATCACTGTTATTTGAGTTGATTTGGGAGAATCTTATAGCAGAAAAATATCCAACTTTATAGGTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAGGTTTTTTTCCCACCTTTTTATCTTATGTTTCGGATCTCTTAGGTTCACCTGCTACCTTTATATTTTACTGGAATTTCTCTCTATTGTGTCATTTGTGCGATGAGCCCTTTCAAGTTTCAAAGTTACAGGACTTTCACTTATATGGGACCTTTAATTTCACTTATGTTCACCTAGCAAGGTGCTGAGGAATTTCATTTACCATTGTTCATTGCTTCCTCGCTTATCTTTGCTTGGGGGGTTGGTTTGTGAACAGGCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTGGTAGAATGTCTTTCAGATATTATGTTTTTTCTGTCTCATGTTTTTCATGGCCATGTTTGATTCATTTATTTTTTTCTTTTTCATGTTGAAGCCCCTT</genome_strand>
        <mrna_strand>CGTTATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAAT................................................................................................................................................................................................................................................................................................................................TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAG................................................................................................................GACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG............................................................................................GTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAG.............................................................................................................................................................................................................................................................GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTG...........................................................................................CCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318246" ref_strand="+" ref_description="SGN-E318246 [cTOA-29-A20]">
      <seq>atctctggccaaagttgacgccattcactctcctttgctccttccgatctcaatctccggtgaactcctgcgtgtagttgttgtttctgaagtcttcatggctgatcagcaagcagttgaagggtcaagtacaagtaatgattctggtggaagttctgaatcaaccgtggttctcaacatcaagaccttagattcccagacctatacttttaacgtggataagaatttgcaagtttcagccttgaaggacaaactagcaagtcagattggtgtacctgttgagcagcagagactaatttttaggggcaaggtcttgaaggataatcaccttctttctgaatattatgtggaaaatggggacacactacatttagtgctgaggcagtctcaattgcaagctccatcaggtggtagcagtggcgaagctactactaacaatgttaacagaggacaagagcctcaacccactgctggtggctcacggaatcgtatcgggcagatttcacacagtgttgtccttggaacttttaatgttggagatccgggggaaggacttgtgcctgatcttaatcgggttattggggcagttttgaacactgtagggatcgggaacatgaccggtggacagcttcctggtgtgcaggccagcactccagctcctcgccctcaaggaaatgagagtttaagtcagtcaggaagtcagcaatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="37224" stop="43651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37524" g_stop="37596" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40983" g_stop="41135" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="226" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320">
            <donor d_prob="0.261" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41456" g_stop="41573" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="344" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.459" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42527" g_stop="42631" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="449" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.462" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42744" g_stop="42868" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="574" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42961" g_stop="43029" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="643" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43283" g_stop="43351" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="712" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E318246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37524" e_stop="37596"/>
          <exon e_start="40983" e_stop="41135"/>
          <exon e_start="41456" e_stop="41573"/>
          <exon e_start="42527" e_stop="42631"/>
          <exon e_start="42744" e_stop="42868"/>
          <exon e_start="42961" e_stop="43029"/>
          <exon e_start="43283" e_stop="43351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAGATTAAGATGTGATACATATCAATCATCTTTCAGATTTTTGTGGCTTTTCATTTTGGTGAAGTAAGTAGATTCATTTAAAGGCATCAAGAAGATGCAAGCTTAACAAGGATAGCTCAGTTAAGCTCACAACATTAAGGATCTGTAGCTTCCGTCGAAATCTTGCTAGTAGGTTTCCGTTGTATATCTCTCCGGCTGTTACGATTTTTAATCGTAAATTAGGTTAAAATGCTTTGTATAGTTTGATTCGTATGAATGTTCCAATCTCAATTTTGTGTATTCATTTCTTGCTGTTATTGCTTTACAAGCTTATGTAAGCTCTTGTTTGCGTGTTGTGTACAAAGGTTTGAATTTTGATGTCAGTTTCCTCAAATTTTTTTATCAAAGAAAATGAAAAAAGATAAAAGATCAAGGCAATACAAATCTTGCCGAATTTAAAGCTTTGGCTGTTGTTGACCTTATGTGTAGTATCATTGAGGGTTAGAAGTTTGATTCCATTTTTGGATTTGAATTACTGAAATCTCATGTGCTTTCATGTTTTCTTGACATATACAAAGTTTTGATGGTTACTAGTCAGTATTTGCGTCGGTTCCCTCAATATTTTATCCAAGAGAATGAGGGGAAAAAAAGATTAAGGCAATACATATCAATCATCTTTCAGTTTTTTGCTGAACTTCTCTTTTTTGATGAAGTAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAAAGGTCTGATGCAATCGAGCAGTGCAGTAGCTAGTGGTGGACGCTTTCTGTGTGCTTGTGGCTGAAGTAGCATCAGATGGCTAGCTGGAATTTCTTTTTTGGGGAGATTATTCTGTGTGATACTTTTTTTACTGAACTTAAAGCTCTAGCTTCTGTATGACCTTACGTGTAGTGTCATTGAGGATTAGAACTTTGATTCAACTTTTGGATTTGAGATACTGGAATTTCATATGTATTGCGACCTAGCCAATGGAAGCTGTATTCATATTTATCACTTGGTCTTAGGCTTGATTCTGGGAACTGCTGTCCCATCACCATTTAGATATTGCAATTCCTCATAGCAGATCACTTATAAGATCAACAGGGCAGGTTCCATGGACTAAAAGATATTGTAGGAGCTCACAACGGTCCATTTGTAGGTTAGGCTATCTAGCCTGTAAACCATTGTTTAGATATGTCAATAACTCATAAATGAAGCCCCAGCTGAGACATAAATGTTGAACATTTACTTATAAAAAGATAAAAGTTGAACATTTAGAGATCATATAGAAAGTACCATTTCAAATGATTGTATTATGAATTTACTTGTCTTTGTTAAAGATCCATTGTTTCGTCTCTTGAGAAGCAATAAAAACAAGATTAAAGGAAACAAGTGCTAACAGTATTGAAAAGGAAAGCATAACTAAAGAAATTGCGTAATTTCTCTCTCAAAAAAGAAATTGCCGGCCATGGTTATAAATTGCAAACTTAAGCTGTATGGGCACATCATATGGTGTACCCTAGTTTCCAAACACAATTGGCATGTAGGATAAGATTTCACTGTCTTATGACCTGAATAAATTAATGTATAATATCTGCTGCTTTTTTCTTGACCTGTGAGAGTGAAAGTTGCGTTCAAGGGATTGCCTGGCCTTCACTGAAGTCCAAAACCAATTACAAATATGCTGACAGTTGAGCTATAGAAAAGTGTGTATGAAGTTACAACAATCAGTATGTTCTCTTAAAAAGCTATTGGTAAATGCCAAGAGAATCCCCATCTTCTATGGGTTTGGTTGAACAACAAAGGTTGTGAAATGTGGAATGCAAAATGTGCCAAGTTTTATATTTAAGTGGAGAAGAGCAGATGTACAAGCCCATTATCCCCAAATTTCTCGGTCACAAAAAAAAAAATTAACAATAGAGTCTACAGACAATGCCACTATATTTATTTCATTAGTCCTTTGTTTGTGGTTCTGTGCAATTCTACATATTTACTTGCCACAACTATGCCAACATTAACTTGACATGAGTGAAACAAGGATGCATCTTAAAAATTCAAGTGTTGTCTGCAATCAAAGGCAGAGTGGATTTTTAGATTTGAATGGAAACAAAATTATTCTTTTTAAAACATAATACATTTGAATGGAAATAAATGTTGGAGGAGGGAATGGGAGGGGGTGAGAGAAAAGTTGGTTAGTGGATTTTTCTTTTTTGACATGATCTCATGTAGGTTGAGGATTGATGTGCATCTCGGGTTTATGATTTTCCGGGCTTCAACGTTCCCTTGTTGCTGGCTTTACATCACTGATATTCTTACAGTACCTACAAAAAAAGATTTGGGCTTCACCTTGGTATTAAAGGATGTGCAAAACAATTCTTCTTTTCATTCATGATTTTGCCATCCTTGGTCATTTTTATATTATTCCAAATGGATTCGTTTCTAAATTGTTCGAGTTTTAGTTTATTTTGCTTCTTTTTTGAGGTGGGTGGGGGGTGAGGGTGCATGTGGGAGGGTAAGGTTTTTTTTTGCTGCTAATTATGCTTTGTTGAATATTCTATCTTTGCTGCTCATGAATCTATATGTGTGATTTGTGTATTGTTAACTTCTCAAAAAAAAAAAAAAAGAATGAATGATTTGCATATTGACGGGTCTAGGCCTTCATTTAAAATATGTGGGTGGATGGTCTACCTTCCTGCCAAGGAGTTTTGGTTTTGCAGTTGCTCCTTGGTGATAGTTTGTCTCAACTATTTTGCACAGTGCTCTATAAATGCTTACCATCCATCAGAGTTTTCTCTTCAGGTAGTTGTTGTTTCAGCAGAGTTTTCTCTGCAGGTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAATGTAAATTTTGTTACTTACTCTGTTTCTGTTGTGGGTTATGCTGAAAAAGAGTATTTACTACCATGCTTGTTCAGTTACATGCAGAGCTTTCTTAAATTTATGCTACTTCTGAAAAGTGATTTTTCCCCCTTTATTCTTGTTAGAAATAATATATTGAAACGTAGAGACCTTTTCTCGAATAAAAACTTATTGATATGAAGTTAAAATGTGGATTTTAGCACTTGGAGTCTTTTATCAATCACGTGCACTGTACTTCTCTGATACATCTCTTATTTGGAACTCATTGTCTACTTTACTTCTCTACCATGTCTCAATCTCAGTTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATTGTATCCTATCAACTGAGGATTTCAAGTTCCCCCCTCATTTTGTCTGCAGTTCGAGCACTCTATGCTGGAAATATTTCTTCTCTTTAAATTTGTTGGTCAGAGTTTTCTGTTAGATGTTTGTATATGTGTGTTTAGCTCCTTACATCTCTATTGAGGTAATTTCCAGGATTTCATCATTTCACATAAGCTTGTCCTACCTTTTCTGTTTCAAAACTGATAGCTGATTTTTAAATGCTTTGAAATTTTCTGAACTGATTCAGAAAGAAGCTCTAACTTGTGGTCATTGAGGGTGAAGTACACTGGAGTTCATGAGAATATACAAGTTTTGAACATAATTTGAAGTAGTTTTTCTTTAAACTGAAAACCCCTTCAAGTGAGATTACACAACTGCCACAAACCTGAACTGGGTCATAGTTTGAAACTCAGTTGATAATGAGCTCTCCCTCTACTCTCCGCTTAAATATTAGGCTTATTGTCTGCGGAAGGCCTCAAACGCATGACATATGCCTTATGTAGAAACCAAGAGTTGGGATGAATATAATGGAGAATTAGGTCTCTGTCTGCTTGTAATATTAATCTCCAGAGGGTAATACTTGTTGACTTTTGGTAATGCCACAAACCTAAATACCTCAAGATATCATATGCAACAAACCTAAATACCTCTAGATATCATATCTCGCTGATCCTTTACCCTGGTCATCTAGAAGGGTGTCCATGTTGGTTAGTAAGCTCAGTGAGTTGTTTCCAACTAACAAATGGATTGGTTTCTCACCTCTTAAGTCCTATCATGTCTATGATTAATTTTAGAGAGTTATCTTTGACCACCACATTAGTTGATACTTAAATGTTTTGTTTATACAACTTCACATGATTAGATGTAATATTTTCGCAAAAAATGGAGCCTCTTTCATCTTCAACTTTTGGGTTTCTTGCCAAAGCTTAACTCTTTCCAGATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAGGTAAAGGCTTCGTGATCTGAAATTTAGGCTCTCAGGTCATTTGGCTGATTTGTTAGTCAGAGGTGTAACAAAAAAGAGGTAACGAACAATTTATTATCTTTGAGTATCACAGGACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGGGTGGGTTGCATAGAAGTTGCAAGATTTTTTAATCACTGTTATTTGAGTTGATTTGGGAGAATCTTATAGCAGAAAAATATCCAACTTTATAGGTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAGGTTTTTTTCCCACCTTTTTATCTTATGTTTCGGATCTCTTAGGTTCACCTGCTACCTTTATATTTTACTGGAATTTCTCTCTATTGTGTCATTTGTGCGATGAGCCCTTTCAAGTTTCAAAGTTACAGGACTTTCACTTATATGGGACCTTTAATTTCACTTATGTTCACCTAGCAAGGTGCTGAGGAATTTCATTTACCATTGTTCATTGCTTCCTCGCTTATCTTTGCTTGGGGGGTTGGTTTGTGAACAGGCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGG</genome_strand>
        <mrna_strand>ATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAAT................................................................................................................................................................................................................................................................................................................................TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAG................................................................................................................GACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG............................................................................................GTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAG.............................................................................................................................................................................................................................................................GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365823" ref_strand="+" ref_description="SGN-E365823 [cLPT-8-I4]">
      <seq>gaacatgaccggtggacagcttcctggtgtgcaggccagcactccagctcctcgccctcaaggaaatgagagtttaagtcagtcaggaagtcagcaatctgggcaggcattttctggtcaatctttgccgcaagtagtgcaaattcctctgggggcagcaatagctgttccctcaattaatttgccccttttggattccttgatcacgctttctgaattcatggacgggatggagcatgtattctcacagaatggttacccgccgaaccagtcacctaataatgcgggagatccacctgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="42696" stop="44019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42996" g_stop="43029" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43283" g_stop="43432" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="184" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43524" g_stop="43593" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="254" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43594" i_stop="43670" i_length="77">
            <donor d_prob="0.473" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43671" g_stop="43719" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="303" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E365823" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42996" e_stop="43029"/>
          <exon e_start="43283" e_stop="43432"/>
          <exon e_start="43524" e_stop="43593"/>
          <exon e_start="43671" e_stop="43719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATGACCGGTGGACAGCTTCCTGGTGTGCAGGTTTTTTTCCCACCTTTTTATCTTATGTTTCGGATCTCTTAGGTTCACCTGCTACCTTTATATTTTACTGGAATTTCTCTCTATTGTGTCATTTGTGCGATGAGCCCTTTCAAGTTTCAAAGTTACAGGACTTTCACTTATATGGGACCTTTAATTTCACTTATGTTCACCTAGCAAGGTGCTGAGGAATTTCATTTACCATTGTTCATTGCTTCCTCGCTTATCTTTGCTTGGGGGGTTGGTTTGTGAACAGGCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTGGTAGAATGTCTTTCAGATATTATGTTTTTTCTGTCTCATGTTTTTCATGGCCATGTTTGATTCATTTATTTTTTTCTTTTTCATGTTGAAGCCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAATGGTGGGGATTTTTATTGTTTTTGCTTTTTCTCTTCTGGTAAATGGATCTCTGAAAGACTTCGCATTCTCTTACCTCAGGTTACCCGCCGAACCAGTCACCTAATAATGCGGGAGATCCACCTGCAGT</genome_strand>
        <mrna_strand>GAACATGACCGGTGGACAGCTTCCTGGTGTGCAG.............................................................................................................................................................................................................................................................GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTTCCCTCAATTAATTTG...........................................................................................CCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAATG.............................................................................GTTACCCGCCGAACCAGTCACCTAATAATGCGGGAGATCCACCTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326195" ref_strand="+" ref_description="SGN-E326195 [cTOC-16-D13]">
      <seq>tgcctttctattagagcttggaaggacgatattgactctcagaatgggacaatcacctgctgaatcttcagtaaatgctggtcctgcagtttacatatcttccaccgggccgaaccccataatggttcagcctttcccccttcaaaccagttcactcttcggtaactcagctgctgttccacctaaccccggtacctttggcgctcttgggattggtaatgccccaaggcatgtcaatattcatatacatgcagcgcctattacttctgcagttggtgctagggcggccaatggagatggagcacacggtgaacgtggtaatggaactgattctggccaaacaagggttctgcctgttggaaatataatggctacagctgtggcaccaaggcctgctgttatctcagtctctagtatgccacagcctggccaatcagatggcccaagtggccaagagcgctctactgcgtctggtgctgagaatgatactgttagcactcaactagatgagacatctgcaagtgggatgactgtgcctgagcctctaccagcacacagtgttcccggggagagaggataaaatgagtgtaggtcaatcaagcgaaatgtctcatagtaagccagaagcttcagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="45881" stop="47681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46181" g_stop="46238" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46239" i_stop="46320" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46321" g_stop="46392" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="130" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46393" i_stop="46504" i_length="112">
            <donor d_prob="0.136" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46505" g_stop="46628" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="254" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46629" i_stop="46750" i_length="122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46751" g_stop="46924" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="428" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46925" i_stop="47090" i_length="166">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47091" g_stop="47245" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="584" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47246" i_stop="47329" i_length="84">
            <donor d_prob="0.923" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47330" g_stop="47381" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="636" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E326195" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46181" e_stop="46238"/>
          <exon e_start="46321" e_stop="46392"/>
          <exon e_start="46505" e_stop="46628"/>
          <exon e_start="46751" e_stop="46924"/>
          <exon e_start="47091" e_stop="47245"/>
          <exon e_start="47330" e_stop="47381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTTCTATTAGAGCTTGGAAGGACGATATTGACTCTCAGAATGGGACAATCACCTGTATGACTTTTCCCTTCTCTTATTGGTGTTTAAGCATTTTCTATTAGTGTTTCTCTTACAATTATTAAGCTGATATTTGCAGGCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAGGTTTGTTTGACAGATAAAAGTAGAGGGACTAGGCTAGGATTGCAATCTGAAAAATAGGTAGATGCTAGCTCCTTCTTTTTTTCTCATGACTTGTTGCTCTTCCTTGATGTAGCCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAGGTACGAAAAATATGCTAGTACATTATTCTGTATTTCGCTTATTGTTTTTCCTTATTTTCTTGTGGAGCATTGCAATAATTGGGAAGTAATGTAGTAACCTTTCTAACAATGGGTGCTTTTAGCGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTGGTATAGCGCCACAGATTTATGTCCTAAAATAATCTATTATCATATCTGAACTTTTTGCAGACTGAGAGCTTCTTGTTAACACGTGTAACGTCTGTACTTTTTAATTCGCTGATGATGATACAATACGGCGATATACTTTCTGAAGTGCTTTTTCTGTATCATGAAGGCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCC-GGGAGAGAGGATAAAATGGTCAGTGCCAATAAAATGATTCCATGACCTATCTTTTTACCTCTAGTTTGACATTCTAGACCTAATTAAACTTGTAAATGCCAGAGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCA</genome_strand>
        <mrna_strand>TGCCTTTCTATTAGAGCTTGGAAGGACGATATTGACTCTCAGAATGGGACAATCACCT..................................................................................GCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAG................................................................................................................CCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAG..........................................................................................................................CGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTG......................................................................................................................................................................GCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGGAGAGAGGATAAAATG....................................................................................AGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339980" ref_strand="+" ref_description="SGN-E339980 [cTOF-3-E17]">
      <seq>ttgactctcagaatgggacaatcacctgctgaatcttcagtaaatgctggtcctgcagtttacatatcttccaccgggccgaaccccataatggttcagcctttcccccttcaaaccagttcactcttcggtaactcagctgctgttccacctaaccccggtacctttggcgctcttgggattggtaatgccccaaggcatgtcaatattcatatacatgcagcgcctattacttctgcagttggtgctagggcggccaatggagatggagcacacggtgaacgtggtaatggaactgattctggccaaacaagggttctgcctgttggaaatataatggctacagctgtggcaccaaggcctgctgttatctcagtctctagtatgccacagcctggccaatcagatggcccaagtggccaagagcgctctactgcgtctggtgctgagaatgatactgttagcactcaactagatgagacatctgcaagtgggatgactgtgcctgagcctctaccagcacacagtgttcccgggagagaggataaaatgagtgtaggtcaatcaagcgaaatgtctcatagtaagccagaagcttcagccagtgtaggaagagctcanaggtctagtcaggagttaggtagtcctgatgaatcctcatctgtgccccttggattanggctccggaggtttgcagcctaagaaacgaactaagcaatctgtagctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="45912" stop="48715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46212" g_stop="46238" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46239" i_stop="46320" i_length="82">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46321" g_stop="46392" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="99" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46393" i_stop="46504" i_length="112">
            <donor d_prob="0.136" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46505" g_stop="46628" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="223" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46629" i_stop="46750" i_length="122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46751" g_stop="46924" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="397" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46925" i_stop="47090" i_length="166">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47091" g_stop="47245" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="552" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47246" i_stop="47329" i_length="84">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47330" g_stop="47479" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="703" r_length="151" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.768" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="48389" g_stop="48415" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="730" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E339980" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46212" e_stop="46238"/>
          <exon e_start="46321" e_stop="46392"/>
          <exon e_start="46505" e_stop="46628"/>
          <exon e_start="46751" e_stop="46924"/>
          <exon e_start="47091" e_stop="47245"/>
          <exon e_start="47330" e_stop="47479"/>
          <exon e_start="48389" e_stop="48415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTCTCAGAATGGGACAATCACCTGTATGACTTTTCCCTTCTCTTATTGGTGTTTAAGCATTTTCTATTAGTGTTTCTCTTACAATTATTAAGCTGATATTTGCAGGCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAGGTTTGTTTGACAGATAAAAGTAGAGGGACTAGGCTAGGATTGCAATCTGAAAAATAGGTAGATGCTAGCTCCTTCTTTTTTTCTCATGACTTGTTGCTCTTCCTTGATGTAGCCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAGGTACGAAAAATATGCTAGTACATTATTCTGTATTTCGCTTATTGTTTTTCCTTATTTTCTTGTGGAGCATTGCAATAATTGGGAAGTAATGTAGTAACCTTTCTAACAATGGGTGCTTTTAGCGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTGGTATAGCGCCACAGATTTATGTCCTAAAATAATCTATTATCATATCTGAACTTTTTGCAGACTGAGAGCTTCTTGTTAACACGTGTAACGTCTGTACTTTTTAATTCGCTGATGATGATACAATACGGCGATATACTTTCTGAAGTGCTTTTTCTGTATCATGAAGGCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGAGAGAGGATAAAATGGTCAGTGCCAATAAAATGATTCCATGACCTATCTTTTTACCTCTAGTTTGACATTCTAGACCTAATTAAACTTGTAAATGCCAGAGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCT-CGGAGGTTTGCAGCCTAAGGTAAGCAAGCTGTTTTGATGCTGCTTCCCAGATATATCTTTGATTATTAGATTTGCTGAAAGATGGAGTGGTAATAGAGTACCTTCCTTTTTTATTTCCAAATGTAGTGGGCTTTTTAGAAGGACATGTGCTAAGGAGTCATTTTCTGTTGGTACTAAATGAAATGATTTTGTCTGTGACATGTGATAAGGAGTCATTTTCTGTTGGTACAAAATGAAATGATTTTGTCTGCTGAGTTTTGTAGTGTTCATGTACCATTAAATGGTAGGTCAAATTTACTGTTTTACTTTCTTGAGTGCTCAATTTGTTTGTCCTTTTGTCTTGCCAATTGCTCATTCACCTTGCATTAGCATTCCCGCCCCTAAAGAGATTTTGGAAATTGAATTTTATAAGTAGTGATAAATAAGCTCCCCCTCCCTACGAGACTTATAGTCTAATGGTAAGACCGCAGCATATAATGTGTGGGTTTAAGCGCACATAACATGTTTGACAATAGCCTGGTAATTAAGCGGAGAAGGGTAGAGGGATATGCCCTTTCATTGTGTTTCAAACAGTACACTAATGGCCCTTGGGATTTCTCAGGGTTGGGTCAGTGAGTTTTAATTTCTTCTGCTGCCTTGTTTATCTTTTTCTTAACAGTGTCGAAAGAAATTGAGAGCTGGTTACTGCCCTTGTAATGATTTTTCCCTAAATCCTAAGCTACTATGTTGAATTAGTGTCTATGGTGGTTTGTCAGTTTGGTGCAATGTTATTGTTGATCTCATAACTGAAGAAAAAGTCAGATTTGTGAATGTTCCTTGGAATTGTTTTAACCTTTCACGTAGTGAACTTTCTGTTCCTTGTACTGCTTTTCCAACTTTTGGTCCTGGACTTGACATTCTTATTTCTATTGGTGGATCTGCAAATTAGAAACGAACTAAGCAATCTGTAGCTCAT</genome_strand>
        <mrna_strand>TTGACTCTCAGAATGGGACAATCACCT..................................................................................GCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAG................................................................................................................CCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAG..........................................................................................................................CGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTG......................................................................................................................................................................GCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGAGAGAGGATAAAATG....................................................................................AGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCANAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTANGGCTCCGGAGGTTTGCAGCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAACTAAGCAATCTGTAGCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209262" ref_strand="+" ref_description="SGN-E209262 [cLEC-53-I10]">
      <seq>ttccaccgggccgaaccccataatggttcagcctttcccccttcaaaccagttcactcttcggtaactcagctgctgttccacctaaccccggtacctttggcgctcttgggattggtaatgccccaaggcatgtcaatattcatatacatgcagcgcctattacttctgcagttggtgctagggcggccaatggagatggagcacacggtgaacgtggtaatggaactgattctggccaaacaagggttctgcctgttggaaatataatggctacagctgtggcaccaaggcctgctgttatctcagtctctagtatgccacagcctggccaatcagatggcccaagtggccaagagcgctctactgcgtctggtgctgagaatgatactgttagcactcaactagatgagacatctgcaagtgggatgactgtgcctgaacctctaccagcacacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="46062" stop="47521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46362" g_stop="46392" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46393" i_stop="46504" i_length="112">
            <donor d_prob="0.136" d_score="0.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46505" g_stop="46628" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="155" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46629" i_stop="46750" i_length="122">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46751" g_stop="46924" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="329" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46925" i_stop="47090" i_length="166">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.749" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47091" g_stop="47221" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="460" r_length="131" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E209262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46362" e_stop="46392"/>
          <exon e_start="46505" e_stop="46628"/>
          <exon e_start="46751" e_stop="46924"/>
          <exon e_start="47091" e_stop="47221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACCGGGCCGAACCCCATAATGGTTCAGGTTTGTTTGACAGATAAAAGTAGAGGGACTAGGCTAGGATTGCAATCTGAAAAATAGGTAGATGCTAGCTCCTTCTTTTTTTCTCATGACTTGTTGCTCTTCCTTGATGTAGCCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAGGTACGAAAAATATGCTAGTACATTATTCTGTATTTCGCTTATTGTTTTTCCTTATTTTCTTGTGGAGCATTGCAATAATTGGGAAGTAATGTAGTAACCTTTCTAACAATGGGTGCTTTTAGCGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTGGTATAGCGCCACAGATTTATGTCCTAAAATAATCTATTATCATATCTGAACTTTTTGCAGACTGAGAGCTTCTTGTTAACACGTGTAACGTCTGTACTTTTTAATTCGCTGATGATGATACAATACGGCGATATACTTTCTGAAGTGCTTTTTCTGTATCATGAAGGCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGT</genome_strand>
        <mrna_strand>TTCCACCGGGCCGAACCCCATAATGGTTCAG................................................................................................................CCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAG..........................................................................................................................CGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTG......................................................................................................................................................................GCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAACCTCTACCAGCACACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364840" ref_strand="+" ref_description="SGN-E364840 [cLPT-4-M6]">
      <seq>gactgtgcctgagcctctaccagcacacagtgttcccggaagagaggataaaatgagtgtaggtcaatcaagcgaaatgtctcatagtaagccagaagcttcagtcagtgtaggaagagctcaaaggtctagtcaggagttaggtagtcctgatgaatcctcatctgtgccccttggattagggctcggaggtttgcagcctaagaaacgaactaagcaatctgtagctcatggaattaatgctgatggttcaagtagcagcaatccaaatgaactacctcaaagagatgagcgtcaatttttgcagtctcttgcagcgcttgcagccaggggaaatgagcctgctatgccttcaatgacacactcagataggggagttatggggactattggctcgggaaaccgaaatgttgatggccagtcagagatagcagatgcaatgtctagtgtccttcagagtcctgctttaaatggtttgttgagtggggtttcacaacaaactggggctggctctccggatctcttgaggaatatgatgcagcaattcactcaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="46891" stop="49040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47191" g_stop="47245" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47246" i_stop="47329" i_length="84">
            <donor d_prob="0.923" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47330" g_stop="47479" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="205" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48389" g_stop="48740" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="557" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E364840" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47191" e_stop="47245"/>
          <exon e_start="47330" e_stop="47479"/>
          <exon e_start="48389" e_stop="48740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGAGAGAGGATAAAATGGTCAGTGCCAATAAAATGATTCCATGACCTATCTTTTTACCTCTAGTTTGACATTCTAGACCTAATTAAACTTGTAAATGCCAGAGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAGGTAAGCAAGCTGTTTTGATGCTGCTTCCCAGATATATCTTTGATTATTAGATTTGCTGAAAGATGGAGTGGTAATAGAGTACCTTCCTTTTTTATTTCCAAATGTAGTGGGCTTTTTAGAAGGACATGTGCTAAGGAGTCATTTTCTGTTGGTACTAAATGAAATGATTTTGTCTGTGACATGTGATAAGGAGTCATTTTCTGTTGGTACAAAATGAAATGATTTTGTCTGCTGAGTTTTGTAGTGTTCATGTACCATTAAATGGTAGGTCAAATTTACTGTTTTACTTTCTTGAGTGCTCAATTTGTTTGTCCTTTTGTCTTGCCAATTGCTCATTCACCTTGCATTAGCATTCCCGCCCCTAAAGAGATTTTGGAAATTGAATTTTATAAGTAGTGATAAATAAGCTCCCCCTCCCTACGAGACTTATAGTCTAATGGTAAGACCGCAGCATATAATGTGTGGGTTTAAGCGCACATAACATGTTTGACAATAGCCTGGTAATTAAGCGGAGAAGGGTAGAGGGATATGCCCTTTCATTGTGTTTCAAACAGTACACTAATGGCCCTTGGGATTTCTCAGGGTTGGGTCAGTGAGTTTTAATTTCTTCTGCTGCCTTGTTTATCTTTTTCTTAACAGTGTCGAAAGAAATTGAGAGCTGGTTACTGCCCTTGTAATGATTTTTCCCTAAATCCTAAGCTACTATGTTGAATTAGTGTCTATGGTGGTTTGTCAGTTTGGTGCAATGTTATTGTTGATCTCATAACTGAAGAAAAAGTCAGATTTGTGAATGTTCCTTGGAATTGTTTTAACCTTTCACGTAGTGAACTTTCTGTTCCTTGTACTGCTTTTCCAACTTTTGGTCCTGGACTTGACATTCTTATTTCTATTGGTGGATCTGCAAATTAGAAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTC</genome_strand>
        <mrna_strand>GACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGAAGAGAGGATAAAATG....................................................................................AGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGTCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTCAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699859" ref_strand="+" ref_description="SGN-E699859 [FA11BF09]">
      <seq>gagggtgtatgtcaatcaagcgaaatgtctcatagtaagccagaagcttcagccagtgtaggaagagctcaaaggtctagtcaggagttaggtagtcctgatgaatcctcatctgtgccccttggattagggctcggaggtttgcagcctaagaaacgaactaagcaatctgtagctcatggaattaatgctgatggttcaagtagcagcaatccaaatgaactacctcaaagagatgagcgtcaatttttgcagtctcttgcagcgcttgcagccaggggaaatgagcctgctatgccttcaatgacacacttagataggggagttatggggactattggctcgggaaaccgaaatgttgatggccagtcagagatagcagatgcaatgtctagtgtccttcagagtcctgctttaaatggtttgttgagtggggtttcacaacaaactggggctggctctccggatctcttgaggaatatgatgcagcaattcactcaaagtccagcaatgatgaacactgtaagtcagattgcgcagcagattgacacccaggatcttggaagcatgttttccgggcaaggtggtggtatggacttgtctaggatgtttcagcaaatgatgccaattgtgtctcaagctcttggtggcatctcaggtgtgcctcaacgaattcctaatattgcacagaggcttggtgagaatactgcagtaagaggggcaacaccaaccactgaaaacgttcaaattgatcttcatgaggttgccccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="47028" stop="49393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47327" g_stop="47479" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48389" g_stop="48982" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="747" r_length="594" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49066" g_stop="49093" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="775" r_length="28" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E699859" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47327" e_stop="47479"/>
          <exon e_start="48389" e_stop="48982"/>
          <exon e_start="49066" e_stop="49093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAGGTAAGCAAGCTGTTTTGATGCTGCTTCCCAGATATATCTTTGATTATTAGATTTGCTGAAAGATGGAGTGGTAATAGAGTACCTTCCTTTTTTATTTCCAAATGTAGTGGGCTTTTTAGAAGGACATGTGCTAAGGAGTCATTTTCTGTTGGTACTAAATGAAATGATTTTGTCTGTGACATGTGATAAGGAGTCATTTTCTGTTGGTACAAAATGAAATGATTTTGTCTGCTGAGTTTTGTAGTGTTCATGTACCATTAAATGGTAGGTCAAATTTACTGTTTTACTTTCTTGAGTGCTCAATTTGTTTGTCCTTTTGTCTTGCCAATTGCTCATTCACCTTGCATTAGCATTCCCGCCCCTAAAGAGATTTTGGAAATTGAATTTTATAAGTAGTGATAAATAAGCTCCCCCTCCCTACGAGACTTATAGTCTAATGGTAAGACCGCAGCATATAATGTGTGGGTTTAAGCGCACATAACATGTTTGACAATAGCCTGGTAATTAAGCGGAGAAGGGTAGAGGGATATGCCCTTTCATTGTGTTTCAAACAGTACACTAATGGCCCTTGGGATTTCTCAGGGTTGGGTCAGTGAGTTTTAATTTCTTCTGCTGCCTTGTTTATCTTTTTCTTAACAGTGTCGAAAGAAATTGAGAGCTGGTTACTGCCCTTGTAATGATTTTTCCCTAAATCCTAAGCTACTATGTTGAATTAGTGTCTATGGTGGTTTGTCAGTTTGGTGCAATGTTATTGTTGATCTCATAACTGAAGAAAAAGTCAGATTTGTGAATGTTCCTTGGAATTGTTTTAACCTTTCACGTAGTGAACTTTCTGTTCCTTGTACTGCTTTTCCAACTTTTGGTCCTGGACTTGACATTCTTATTTCTATTGGTGGATCTGCAAATTAGAAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAGGTTTGTTCCTGTTAGCTATTTATTTTGTTAGAATGATGTATTTACAAAATTTAAGTTTTATGTATCAATTGCAATCTTTTCAGATTGATCTTCATGAGGTTGCCCAAGAAA</genome_strand>
        <mrna_strand>GAGGGTGTATGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAA...................................................................................ATTGATCTTCATGAGGTTGCCCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233027" ref_strand="+" ref_description="SGN-E233027 [cLED-6-P18]">
      <seq>agcaatccaaatgaactacctcaaagagatgagcgtcaatttttgcagtctcttgcagcgcttgcagccaggggaaatgagcctgctatgccttcaatgacacacttagataggggagttatggggactattggctcgggaaaccgaaatgttgatggccagtcagagatagcagatgcaatgtctagtgtccttcagagtcctgctttaaatggtttgttgagtggggtttcacaacaaactggggctggctctccggatctcttgaggaatatgatgcagcaattcactcaaagtccagcaatgatgaacactgtaagtcagattgcgcagcagattgacacccaggatcttggaagcatgttttccgggcaaggtggtggtatggacttgtctaggatgtttcagcaaatgatgccaattgtgtctcaagctcttggtggcatctcaagtgtgcctcaacgaattcctaatattgcacagaggcttggtgagaatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="48143" stop="49244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48443" g_stop="48944" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E233027" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48443" e_stop="48944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTG</genome_strand>
        <mrna_strand>AGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAAGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733592" ref_strand="+" ref_description="SGN-E733592 [LB10BG02]">
      <seq>ccagtgcttgcagccaggggaaatgagcctgctatgccttcaatgacacacttagataggggagttatggggactattggctcgggaaaccgaaatgttgatggccagtcagagatagcagatgcaatgtctagtgtccttcagagtcctgctttaaatggtttgttgagtggggtttcacaacaaactggggctggctctccggatctcttgaggaatatgatgcagcaattcactcaaagtccagcaatgatgaacactgtaagtcagattgcgcagcagattgacacccaggatcttggaagcatgttttccgggcaaggtggtggtatggacttgtctaggatgtttcagcaaatgatgccaattgtgtctcaagctcttggtggcatctcaggtgtgcctcaacgaattcctaatattgcacagaggcttggtgagaatactgcagtaagaggggcaacaccaaccactgaaaacgttcagattgatcttcatgaggttgcccaagaaatcgagaacaatagtccacctgtagagattcttcgttctttggttcaaagtacagaatctttgcatcaccatggaagtagcgatctaagtctggctgatgaactatccagtgaagagaacctagccgacgaattcatgcagatgctgcgtaatgatgtttctcagcgattcaaggataaagagggcaaatagggaatatacttaatttttcttctcattttctgatattatttctaaagaatgtcatcattttgggttctncattagacagacagagacagctgatgtgggggggaacccattattatactattcccgtgtgtatatgtacatacctatggaatagttaatccagtggatgggaactgtattttctatgtttaatcaaaacaatggtaccattttattctatcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="48198" stop="49887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48497" g_stop="48982" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49066" g_stop="49221" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="642" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49303" g_stop="49593" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="934" r_length="292" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E733592" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>933</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48497" e_stop="48982"/>
          <exon e_start="49066" e_stop="49221"/>
          <exon e_start="49303" e_stop="49593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAGGTTTGTTCCTGTTAGCTATTTATTTTGTTAGAATGATGTATTTACAAAATTTAAGTTTTATGTATCAATTGCAATCTTTTCAGATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGACGTGAGTAGCTGGATTTGTGATTTGAGTTTGGTGTTTGTTAAGGGTATGCATGGGTCTTATGTTTCATTCTCATTCCTGCAGGAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGT-GGGGGGAAACCATTATTATACTATTCCCGTGTGTATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAATGTGGG</genome_strand>
        <mrna_strand>CCAGTGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG...................................................................................ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC.................................................................................GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTNCATTAGACAGACAGAGACAGCTGATGTGGGGGGGAACCCATTATTATACTATTCCCGTGTGTATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394377" ref_strand="+" ref_description="SGN-E394377 [TUS-14-O8]">
      <seq>cagattgacacccaggatcttggaagcatgttttccgggcaaggtggtggtatggacttgtctaggatgtttcagcaaatgatgccaattgtgtctcaagctcttggtggcatctcaggtgtgcctcaacgaattcctaatattgcacagaggcttggtgagaatactgcagtaagaggggcaacaccaaccactgaaaacgttcagattgatcttcatgaggttgcccaagaaatcgagaacaatagtccacctgtagagattcttcgttctttggttcaaagtacagaatctttgcatcaccatggaagtagcgatctaagtctggctgatgaactatccagtgaagagaacctagccgacgaattcatgcagatgctgcgtaatgatgtttctcagcgattcaaggataaagagggcaaatagggaatatacttaatttttcttctcattttctgatattatttctaaagaatgtcatcattttgggttctcaattagacagacagagacagctgatgtggggggaaaccattattatactattcccgtgtgtaatatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="48476" stop="49802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48776" g_stop="48982" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49066" g_stop="49221" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="363" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49303" g_stop="49502" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="564" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E394377" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48776" e_stop="48982"/>
          <exon e_start="49066" e_stop="49221"/>
          <exon e_start="49303" e_stop="49502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAGGTTTGTTCCTGTTAGCTATTTATTTTGTTAGAATGATGTATTTACAAAATTTAAGTTTTATGTATCAATTGCAATCTTTTCAGATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGACGTGAGTAGCTGGATTTGTGATTTGAGTTTGGTGTTTGTTAAGGGTATGCATGGGTCTTATGTTTCATTCTCATTCCTGCAGGAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGT-ATATGTA</genome_strand>
        <mrna_strand>CAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG...................................................................................ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC.................................................................................GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGTAATATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E202035" ref_strand="+" ref_description="SGN-E202035 [cLEC-7-L9]">
      <seq>agattgacacccaggatcttggaagcatgttttccgggcaaggtggtggtatggacttgtctaggatgtttcagcaaatgatgccaattgtgtctcaagctcttggtggcatctcaggtgtgcctcaacgaattcctaatattgcacagaggcttggtgagaatactgcagtaagaggggcaacaccaaccactgaaaacgttcagattgatcttcatgaggttgcccaagaaatcgagaacaatagtccacctgtagagattcttcgttctttggttcaaagtacagaatctttgcatcaccatggaagtagcgatctaagtctggctgatgaactatccagtgaagagaacctagccgacgaattcatgcagatgctgcgtaatgatgtttctcagcgattcaaggataaagagggcaaatagggaatatacttaatttttcttctcattgtctgatattatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="48477" stop="49707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48777" g_stop="48982" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49066" g_stop="49221" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="362" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81">
            <donor d_prob="0.400" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49303" g_stop="49407" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="467" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E202035" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48777" e_stop="48982"/>
          <exon e_start="49066" e_stop="49221"/>
          <exon e_start="49303" e_stop="49407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAGGTTTGTTCCTGTTAGCTATTTATTTTGTTAGAATGATGTATTTACAAAATTTAAGTTTTATGTATCAATTGCAATCTTTTCAGATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGACGTGAGTAGCTGGATTTGTGATTTGAGTTTGGTGTTTGTTAAGGGTATGCATGGGTCTTATGTTTCATTCTCATTCCTGCAGGAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTC</genome_strand>
        <mrna_strand>AGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG...................................................................................ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC.................................................................................GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTGTCTGATATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331573" ref_strand="+" ref_description="SGN-E331573 [cTOD-9-B18]">
      <seq>tattttagcactttttgtaaatgttgctaaagcttgcggcgacaatttacataaaagccgctttaacattctttgctaatgtgtatatttattgccgctattgttgttatagtgctgtgatgaatccagatattttgaggactaaatcatcgaattgagtgtccctttgtcgaaaatactgtatatatcagctgcagtggcaagaaaagcaggagaaccactggtgatagaggaagtgattgtggctcctcctaaagcacatgaagttcggctcaaaatcatttgcacttctctctgtcataccgacattaccttatggaagttgaaagtatggaacttttatctcccccgagaatcgattgtttattaacttttgtatcaactatttcttgcttcttgtaaggaatttcctggctgctttccaagaatcttaggccatgaagctttcggggttgtggagagtgttggagaagatgttgatgagttgaaagaaggagattcagttgtaccgatatttttgcctgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="50427" stop="51982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50727" g_stop="50917" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50918" i_stop="51254" i_length="337">
            <donor d_prob="0.518" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51255" g_stop="51513" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="450" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51514" i_stop="51604" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.844" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51605" g_stop="51682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="528" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E331573" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331573" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50727" e_stop="50917"/>
          <exon e_start="51255" e_stop="51513"/>
          <exon e_start="51605" e_stop="51682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTAGCACTTTTTGTAAATGTTGCTAAAGCTTGCGGCGACAATTTACATAAAAGCCGCTTTAACATTCTTTGCTAATGTGTATATTTATTGCCGCTATTGTTGTTATAGTGCTGTGATGAATCCAGATATTTTGAGGACTAAATCATCGAATTGAGTGTCCCTTTGTCGAAAATACTGTATATATCAGGTCAATTCTGTATTTACTTTATATATGTAGATGATGAACACAGGTACTATGAGATCATATGGTTCCTACATTGAATATGAACAAGAACTGATCCTCACCTTGCATATGTAGAAAAAGGGTTCTTAGCATTTGTTGATTGGTAAAGGAACATGAAAACAATAGGAGGATTTATGATTGATAAAAAAATTGCTGCTTTCTGTGTTGAATTGTGAACCATTTCAATGGTTAGATTAAATTGTGTGACAGTTAGCAAATTGAGAGTGCAATGTTAATTACTTAATTATATTATGTCTCAACACGTTGTAAGTTACTGACTTGTGAGTCGTATGTGTTGCAGCTGCAGTGGCAAGAAAAGCAGGAGAACCACTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCACATGAAGTTCGGCTCAAAATCATTTGCACTTCTCTCTGTCATACCGACATTACCTTATGGAAGTTGAAAGTATGGAACTTTTATCTCCCCCGAGAATCGATTGTTTATTAACTTTTGTATCAACTATTTCTTGCTTCTTGTAAGGAATTTCCTGGCTGCTTTCCAAGAATCTTAGGCCATGAAGCTTTCGGGTAAATTTTACTCCTTCCATTTCATTTTATATGAACGTGTCACGAAATAAGGCATTGATTCATATATGACATTCTGACTATACTATCTAAGGGTTGTGGAGAGTGTTGGAGAAGATGTTGATGAGTTGAAAGAAGGAGATTCAGTTGTACCGATATTTTTGCCTGACTG</genome_strand>
        <mrna_strand>TATTTTAGCACTTTTTGTAAATGTTGCTAAAGCTTGCGGCGACAATTTACATAAAAGCCGCTTTAACATTCTTTGCTAATGTGTATATTTATTGCCGCTATTGTTGTTATAGTGCTGTGATGAATCCAGATATTTTGAGGACTAAATCATCGAATTGAGTGTCCCTTTGTCGAAAATACTGTATATATCAG.................................................................................................................................................................................................................................................................................................................................................CTGCAGTGGCAAGAAAAGCAGGAGAACCACTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCACATGAAGTTCGGCTCAAAATCATTTGCACTTCTCTCTGTCATACCGACATTACCTTATGGAAGTTGAAAGTATGGAACTTTTATCTCCCCCGAGAATCGATTGTTTATTAACTTTTGTATCAACTATTTCTTGCTTCTTGTAAGGAATTTCCTGGCTGCTTTCCAAGAATCTTAGGCCATGAAGCTTTCGG...........................................................................................GGTTGTGGAGAGTGTTGGAGAAGATGTTGATGAGTTGAAAGAAGGAGATTCAGTTGTACCGATATTTTTGCCTGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717663" ref_strand="+" ref_description="SGN-E717663 [FC02BE08]">
      <seq>gacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanccccctccgggggggaattttttttttttaaaaaaatcccccaaaaaanggggggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63115" stop="8081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62816" g_stop="62503" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62199" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="402" r_length="88" r_score="0.795"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62198" i_stop="61927" i_length="272">
            <donor d_prob="0.000" d_score="0.64"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61926" g_stop="61897" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="0.600"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61896" i_stop="60285" i_length="1612">
            <donor d_prob="0.086" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60284" g_stop="60251" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="466" r_length="34" r_score="0.588"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60250" i_stop="59886" i_length="365">
            <donor d_prob="0.535" d_score="0.00"/>
            <acceptor a_prob="0.786" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59885" g_stop="59836" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="516" r_length="50" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E717663" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62816" e_stop="62503"/>
          <exon e_start="62286" e_stop="62199"/>
          <exon e_start="61926" e_stop="61897"/>
          <exon e_start="60284" e_stop="60251"/>
          <exon e_start="59885" e_stop="59836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTAATATGATAAAAGATGATAAAAATTCTAGAATTTCTATTTAAATTTCTATCGATTCATCTCCTTATAAGAAAGTACCAAATCTATTGATCATTCAACTACTCCGATATAAGAATTAGTCAATCAAATATTAATAGATAATAAATGGAATGGTATAATAACTATCATCATACTATAGTCAAAGCATCTTTAAATTGCAATATTGATATAAAAGATATTTATATAACCAAAACAATCATTAAAATGCAAATATGCAATCTTGAATAGTGACATTAGGTATTTGTATGTATAGCCAAAGCATCTTTAAAATACAAATATGCGATCTTAATAATAACATAAGTTACTTGCTATAAATTAAATACTACCTAACAATATAAAAATTACACTCACTTCAACTTTACCAAAGAAGTTCTCACAGAAGCAATTTTTTTAGCATGCCTTTATGGATTAGACAAGATTGCAATTCAAGCAATAAGCTTTTGAAGAAACATGGAACATTAGCCATGAGGCATGAGCTGTAAGAGTAAAGTTGAGGTTCATTAAGTGTGTGCTTTACAAAGTGTAAAGTGCATATTCTATGAAATGGGGTAACATAATGGTGGGGAACTGGAAAAATAATGAGCATAGATTGATTTATGCATCTTAATCTAAAAAGCCTGCAAAGAACACACTCTGAGATGTAACGATAGGACGATTCAGTATCTGGAACAGTTAGTATTCAAAATATTTCGCGTTAGCCTTAGAAAGGATGTTGGGAAATAAGAAGAGCTCAGAGTCACATATACTAAAATTCATAAAATACAAGTTTTGGATTTGTGATATATGCATACTTGATACCAAATGAAACTGAAAACAAATAGCTAAAATTCAAGCCGAAAAAAACTTACAATTCCAACATATAACAAACAAGACACAACTTTCCCAAAATTGCACGTTCGGAGCAACCAAATTTCATCATAGTAAAAAAAAATCAAAACATTCGAAGCTCGATGCAGAGGTAGATTCAGAATTTAAATTCTACGAGTTCAATATTTATGGGTCTTAGTATTGAACTCATTATATTTTTAAAGTTACAAGTTCATATCTACTATTTTTCACAATTTTAGTTAATTTTTTACATATAAATTTATCTTTCACGTCAAAAATACTGATTTCAAATAAACCGCTACAACAACAGTAGATCCAAGAGCTTCTTAGGTATTCTCAATTTGTTCACTAACATATATATAACCCAACGTTTGCATATACAATTCTAAAAACAATCCATACAATTTCCATTCATAGAACAAAATGAGAAGAAAAACAGAAACCTTATTAAGTATTTTCCTGTTTTTACTTAGTCTAATAATTCTAAGTGTCAATGGAGAATACTTAATAGGATTAGGAAGTTATGACATGACAGGACCAGCTTCACAAGTGAACATGATGGGTTATGGTAATTTTGATCAAGTTACTGGTGGTATACATTTTCGATTACGAGCTAGGACATTCATCGTTGCTGAAAGTTTCAATGGTCCAAGGCTTGTGTTTGTTAATCTTGATGCTGGTATGGCGTCACAACTTGTCACAATCAAGTTACTCGAGCGACTAAAGTCCAGGTACGACTCATATGATTTTATTTGACCATATCTGACTGGACACAAAGCTTATCGAAAGTATTATTTTTTGGTTGTATATATTAAGGTATGGAAATATATATAGTGAAGATAATGTTGCAATAAGTGGGACACATA</genome_strand>
        <mrna_strand>GACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAANCCCCCTCCG.............................................................................................................................................................................................................................................................................................................................................................................GGGGGGAATTTTTTTTTTTTAAAAAAATCCCCCAAAAAANGGGGGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539177" ref_strand="-" ref_description="SGN-E539177 [TUS-58-M20]">
      <seq>gaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaaccaaccaccacggntgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttaatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttattgacttctttgttttatggtttagttgtttcatttccaactctgttatatgaaaacgtattgttcaaaacatatcgagttattatatataaatgcaaatcttagagatattaaaaaaaaaaaaaaaaaactcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62844" stop="61253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62544" g_stop="62503" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61566" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="764" r_length="722" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="765" polyA_stop="782"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E539177" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62544" e_stop="62503"/>
          <exon e_start="62286" e_stop="61566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACC-ACC-ACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</genome_strand>
        <mrna_strand>GAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCAACCAACCACCA-CGGNTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTAATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAAACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278171" ref_strand="-" ref_description="SGN-E278171 [cLER-9-K1]">
      <seq>aggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttaatttccttcactttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttattgacttctttgttttatggttaagttgtttcatttccaactctgttatatgaaaacgtattgttcaaaacatatcgagttattatatataaatgcaaatcttagagatattaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62222" stop="61253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61922" g_stop="61566" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="359" polyA_stop="376"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E278171" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278171" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61922" e_stop="61566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCAC-TTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</genome_strand>
        <mrna_strand>AGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTAATTTCCTTCACTTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTAAGTTGTTTCATTTCCAACTCTGTTATATGAAAACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269559" ref_strand="+" ref_description="SGN-E269559 [cLEM-2-C2]">
      <seq>gagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttattgacttctttgttttatggtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62319" stop="61355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62019" g_stop="61655" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="376"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E269559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62019" e_stop="61655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTA</genome_strand>
        <mrna_strand>GAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231046" ref_strand="+" ref_description="SGN-E231046 [cLED-5-H19]">
      <seq>aggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttnnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62507" stop="61380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62207" g_stop="61670" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E231046" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62207" e_stop="61670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCT</genome_strand>
        <mrna_strand>AGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTNNNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716429" ref_strand="+" ref_description="SGN-E716429 [FB17AB04]">
      <seq>agaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63051" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62751" g_stop="62503" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61679" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="857" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E716429" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62751" e_stop="62503"/>
          <exon e_start="62286" e_stop="61679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTA</genome_strand>
        <mrna_strand>AGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733492" ref_strand="+" ref_description="SGN-E733492 [LB10AF08]">
      <seq>attcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactanatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaaagttgataatatggatttgtaaaatgcagttgattttatcctaaaaaaaaaaaaaaaaactcgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63101" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62801" g_stop="62503" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61680" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="906" r_length="607" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="907" polyA_stop="923"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E733492" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62801" e_stop="62503"/>
          <exon e_start="62286" e_stop="61680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</genome_strand>
        <mrna_strand>ATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTANATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAAGTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732214" ref_strand="+" ref_description="SGN-E732214 [LB01CC11]">
      <seq>caatctttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63098" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62798" g_stop="62503" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61680" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="903" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="904" polyA_stop="915"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E732214" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62798" e_stop="62503"/>
          <exon e_start="62286" e_stop="61680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</genome_strand>
        <mrna_strand>CAATCTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716648" ref_strand="+" ref_description="SGN-E716648 [FB17CF05]">
      <seq>ctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttatccttaaaaaaaaaaaaaaaaaaaaaaaaaccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63074" stop="61379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62774" g_stop="62503" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61680" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="879" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="880" polyA_stop="905"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E716648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62774" e_stop="62503"/>
          <exon e_start="62286" e_stop="61680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</genome_strand>
        <mrna_strand>CTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369192" ref_strand="+" ref_description="SGN-E369192 [TUS-23-K4](-)">
      <seq>aaaaaaaaaagaagggattaaaggataaaattaaggaaaaaatatctggtgttcccaaggaaaaatcaaaaacaaaggatacctcagttccagttgaggaaattcgaggaaacaaaggaaaaaaaaggatttttagacaaaattaaagaaaaattgccaggtggggggcataaaaaaacggaggaagtgggggcccccccccccccccccccggcttcggtggagcattaggcggaggggaaggaaaaaaagggatttttggacaaaattaaggagaaatttccaggatacccctcaaaggctgaaaaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttttgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattttgaaggataattgttagtactgtatttgatatttttgtatgtaagggcatatgtatgtgccttatgggtatgaagtttgataatatggatttgtaaaatgcagttgattttttccttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62541" stop="61375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62240" g_stop="61680" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="607"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E369192" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62240" e_stop="61680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGA-GAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTT</genome_strand>
        <mrna_strand>AAAAAAAAAAGAAGGGATTAAAGGATAAAATTAAGGAAAAAATATCTGGTGTTCCCAAGGAAAAATCAAAAACAAAGGATACCTCAGTTCCAGTTGAGGAAATTCGAGGAAACAAAGGAAAAAAAAGGATTTTTAGACAAAATTAAAGAAAAATTGCCAGGTGGGGGGCATAAAAAAACGGAGGAAGTGGGGGCCCCCCCCCCCCCCCCCCCGGCTTCGGTGGAGCATTAGGCGGAGGGGAAGGAAAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTTCCAGGATACCCCTCAAAGGCTGAAAAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTTTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTTTGAAGGATAATTGTTAGTACTGTATTTGATATTTTTGTATGTAAGGGCATATGTATGTGCCTTATGGGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722647" ref_strand="+" ref_description="SGN-E722647 [FC17DF02]">
      <seq>gacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63115" stop="61386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62816" g_stop="62503" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61686" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="915" r_length="601" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722647" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62816" e_stop="62503"/>
          <exon e_start="62286" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>GACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E734551" ref_strand="+" ref_description="SGN-E734551 [LB12DH05]">
      <seq>ttcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagttttgatatatggatttgtaaaatgcagttgatttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63100" stop="61386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62800" g_stop="62503" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61686" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="899" r_length="601" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="901" polyA_stop="914"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E734551" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62800" e_stop="62503"/>
          <exon e_start="62286" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>TTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTTGATATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E269928" ref_strand="-" ref_description="SGN-E269928 [cLEM-7-I11]">
      <seq>aagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggttgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtacaatgcagttgattttaaaaaaaaaaaaaaaaaaaaactcaagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62544" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62244" g_stop="61686" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="581"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E269928" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269928" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62244" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>AAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGTTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTACAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292674" ref_strand="+" ref_description="SGN-E292674 [cLET-11-I8]">
      <seq>aatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttaatttccttcacttttgttttttttggattctgaaagataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcaggtgatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62500" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62200" g_stop="61686" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="529"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E292674" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62200" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>AATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTAATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAAGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGGTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250528" ref_strand="-" ref_description="SGN-E250528 [cLEG-18-I18]">
      <seq>tcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggntgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaaaaaaaaaaaaactgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62457" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62157" g_stop="61686" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="496"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E250528" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250528" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62157" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>TCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGNTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227444" ref_strand="+" ref_description="SGN-E227444 [cLEL-30-B11](-)">
      <seq>gaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtgggggngcccancccacaccaccaccggttgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62422" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62122" g_stop="61686" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="459"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E227444" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62122" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGC-CACCAC-CACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTT-GGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>GAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGGGGNGCCCANCCCACACCACCACCGGTTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250317" ref_strand="-" ref_description="SGN-E250317 [cLEG-6-D4]">
      <seq>ccaccaccaccaccaccggatgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttatgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatggggtttgataatatgcctttgtaaaatgcacttgattttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62346" stop="61386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62046" g_stop="61686" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="363" polyA_stop="375"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E250317" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250317" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62046" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>CCACCACCACCACCACCGGATGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTATGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGGGGTTTGATAATATGCCTTTGTAAAATGCACTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390855" ref_strand="+" ref_description="SGN-E390855 [TUS-47-E22](-)">
      <seq>accaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62341" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62041" g_stop="61686" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="367"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E390855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62041" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>ACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E227374" ref_strand="+" ref_description="SGN-E227374 [cLEL-30-B11](-)">
      <seq>gaggggaaggagaagaagggatttttggccaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62307" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62007" g_stop="61686" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="324" polyA_stop="342"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E227374" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62007" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>GAGGGGAAGGAGAAGAAGGGATTTTTGGCCAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E358229" ref_strand="-" ref_description="SGN-E358229 [cLHT-23-H20]">
      <seq>aaaagggatttttgggcaaaattaaggagaaattaccaggataccactcaaagggtgaagaggaaaaggagaaggaaaaagactaaattaaatgaaatgttttttttatttcacttttgggatgttatgatttgtgtttgtgtgttgttttggtttttaagtgtttttcatttccttcacattgttttttttggattgtgaaggataattgttagggctgtatttgatatttctgtatgtaagtgcatatatatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62295" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61994" g_stop="61686" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="310" polyA_stop="330"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E358229" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358229" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61994" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGA-TTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>AAAAGGGATTTTTGGGCAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGGTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATTAAATGAAATGTTTTTTTTATTTCACTTTTGGGATGTTATGATTTGTGTTTGTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCAC-ATTGTTTTTTTTGGATTGTGAAGGATAATTGTTAGGGCTGTATTTGATATTTCTGTATGTAAGTGCATATATATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335184" ref_strand="+" ref_description="SGN-E335184 [cTOE-1-D12]">
      <seq>ttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62151" stop="61385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61851" g_stop="61686" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="167" polyA_stop="178"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E335184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61851" e_stop="61686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</genome_strand>
        <mrna_strand>TTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702889" ref_strand="+" ref_description="SGN-E702889 [FA19DH10]">
      <seq>caatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63105" stop="61388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62805" g_stop="62503" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61688" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="902" r_length="599" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E702889" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62805" e_stop="62503"/>
          <exon e_start="62286" e_stop="61688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATT</genome_strand>
        <mrna_strand>CAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539751" ref_strand="+" ref_description="SGN-E539751 [TUS-59-K20](-)">
      <seq>cggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccattcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttaatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62324" stop="61390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62024" g_stop="61690" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E539751" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62024" e_stop="61690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGA</genome_strand>
        <mrna_strand>CGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCATTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTAATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688033" ref_strand="+" ref_description="SGN-E688033 [T3_tus_85_E13]">
      <seq>caatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgttttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63105" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62805" g_stop="62503" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61693" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="898" r_length="595" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E688033" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62805" e_stop="62503"/>
          <exon e_start="62286" e_stop="61693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTG-TTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGT</genome_strand>
        <mrna_strand>CAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537538" ref_strand="+" ref_description="SGN-E537538 [TUS-56-D3](-)">
      <seq>ggataagattaaggaaaacatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggattttaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62518" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62218" g_stop="61693" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E537538" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62218" e_stop="61693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGT</genome_strand>
        <mrna_strand>GGATAAGATTAAGGAAAACATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTTAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256312" ref_strand="-" ref_description="SGN-E256312 [cLEG-37-I21]">
      <seq>agagaaaacagtactcataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggnggcgccaccaccaccaccaccggntgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgcaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62516" stop="61395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62233" g_stop="61695" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="556"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E256312" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256312" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62233" e_stop="61695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCA</genome_strand>
        <mrna_strand>AGAGAAAACAGT-ACTCATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGNGGCGCCACCACCACCACCACCGGNTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722082" ref_strand="+" ref_description="SGN-E722082 [FC16AF02]">
      <seq>gatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaaaaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagttggataatatggatttgtaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63118" stop="61396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62819" g_stop="62503" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61696" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="908" r_length="591" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722082" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>908</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62819" e_stop="62503"/>
          <exon e_start="62286" e_stop="61696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGC</genome_strand>
        <mrna_strand>GATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAAAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTGGATAATATGGATTTGTAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725035" ref_strand="+" ref_description="SGN-E725035 [FC25DE07]">
      <seq>gacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63115" stop="61396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62816" g_stop="62503" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61696" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="906" r_length="592" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E725035" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62816" e_stop="62503"/>
          <exon e_start="62286" e_stop="61696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGC</genome_strand>
        <mrna_strand>GACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722469" ref_strand="+" ref_description="SGN-E722469 [FC17BE04]">
      <seq>gggcgattggcggccaatcggccgaattgacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaaaaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="342" r_length="311" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61696" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="933" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722469" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGC</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAAAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577767" ref_strand="+" ref_description="SGN-E577767 [LE15DA08]">
      <seq>tgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgatatatggatttgtaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62962" stop="61398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62662" g_stop="62503" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61698" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="750" r_length="590" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E577767" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62662" e_stop="62503"/>
          <exon e_start="62286" e_stop="61698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGG-AAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAAT</genome_strand>
        <mrna_strand>TGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGAT-ATATGGATTTGTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E394208" ref_strand="+" ref_description="SGN-E394208 [TUS-42-J2](-)">
      <seq>gcagctttagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggatggaaggataagattaagaaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62586" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62519" g_stop="62503" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61700" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="604" r_length="587" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="605" polyA_stop="621"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E394208" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62519" e_stop="62503"/>
          <exon e_start="62286" e_stop="61700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</genome_strand>
        <mrna_strand>GCAGCTTTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATGGAAGGATAAGATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369765" ref_strand="+" ref_description="SGN-E369765 [TUS-25-O15](-)">
      <seq>aaaaaaaagaagggattgaaggataagattaagaaaaaaatatctggtgatcacaaggaagaatcaaaagcagaggatacctcagttccagttgagaaatacgaggaaacaaaggagaaaaaaggatttctagacaaaattaagaagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggaaaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62538" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62238" g_stop="61700" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="540" polyA_stop="555"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E369765" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62238" e_stop="61700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</genome_strand>
        <mrna_strand>AAAAAAAAGAAGGGATTGAAGGATAAGATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCAAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAAAGGAGAAAAAAGGATTTCTAGACAAAATTAAGAAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAAAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230710" ref_strand="+" ref_description="SGN-E230710 [cLEL-35-N3](-)">
      <seq>agaaaaaaggatttctagacaaaattaagaagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaacacccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62423" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62123" g_stop="61700" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="439"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E230710" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62123" e_stop="61700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCA-CCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</genome_strand>
        <mrna_strand>AGAAAAAAGGATTTCTAGACAAAATTAAGAAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCAACACCCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252258" ref_strand="-" ref_description="SGN-E252258 [cLEG-12-G24]">
      <seq>ttttggacaaaattaaggagaaatttccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaaggctcaatgcaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattangaagnataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtcccttatgtgtatgaagtttgataatatggatttgtaaaaaaaaaaaaaaaataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62285" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61985" g_stop="61700" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="287" polyA_stop="303"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E252258" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252258" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61985" e_stop="61700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</genome_strand>
        <mrna_strand>TTTTGGACAAAATTAAGGAGAAATTTCCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGGCTCAATGCAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTANGAAGNATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTCCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308890" ref_strand="+" ref_description="SGN-E308890 [cLEY-23-F5]">
      <seq>tggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatttgtnaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62282" stop="61399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61982" g_stop="61700" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="284" polyA_stop="300"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E308890" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61982" e_stop="61700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAA</genome_strand>
        <mrna_strand>TGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718599" ref_strand="+" ref_description="SGN-E718599 [FC05AE11]">
      <seq>gaatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62820" g_stop="62503" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61705" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="900" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E718599" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62820" e_stop="62503"/>
          <exon e_start="62286" e_stop="61705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTT</genome_strand>
        <mrna_strand>GAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261910" ref_strand="-" ref_description="SGN-E261910 [cLEG-61-P6]">
      <seq>atcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggccagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatccctcagttccagttgagaaatgcgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccacccccacccaccaccggntgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62827" stop="61405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62527" g_stop="62503" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61705" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="608" r_length="583" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E261910" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261910" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="62527" e_stop="62503"/>
          <exon e_start="62286" e_stop="61705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCA-CCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTT</genome_strand>
        <mrna_strand>ATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGCCAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATCCCTCAGTTCCAGTTGAGAAATGCGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCCCCACCCACCACCGGNTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280482" ref_strand="+" ref_description="SGN-E280482 [cLER-1-E13]">
      <seq>aaatccatattatcaaacttcatacacataaggcacatacatatgcacttacatacagaaatatcaaatacagtactaacaattatccttcagaatccaaaaaaaacaaaagtgaaggaaattaaaaacacttaaaaaccaaaacaacacagaaacacaatcataacatcccaaaagtaaaattaaaaaaacatttcatttcatttagtctttttccttctccttttcctcttcagcctttgagtggtatcctggtaatttctccttaattttgtccaaaaatcccttcttctccttcccctccgcctcatgctccaccgcagccggtggtggtggtggtggcnccnncacttnctccgtcttcttatgcccgccacctggcaatttctccttaattttgtctagaaaaccttttttctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="61405" stop="62428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61705" g_stop="62128" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E280482" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61705" e_stop="62128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCATATTATCAAACTTCATACACATAAGGCACATACATATGCACTTACATACAGAAATATCAAATACAGTACTAACAATTATCCTTCAGAATCCAAAAAAAACAAAAGTGAAGGAAATGAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCGCCGCCACTTCCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTTTGTCTAGAAATCCTTTTTTCTCCTCT</genome_strand>
        <mrna_strand>AAATCCATATTATCAAACTTCATACACATAAGGCACATACATATGCACTTACATACAGAAATATCAAATACAGTACTAACAATTATCCTTCAGAATCCAAAAAAAACAAAAGTGAAGGAAATTAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCNCCNNCACTTNCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTTTGTCTAGAAAACCTTTTTTCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721027" ref_strand="+" ref_description="SGN-E721027 [FC12CC02]">
      <seq>gacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaaaaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63115" stop="61406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62816" g_stop="62503" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61706" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="895" r_length="581" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E721027" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62816" e_stop="62503"/>
          <exon e_start="62286" e_stop="61706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATT</genome_strand>
        <mrna_strand>GACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAAAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720107" ref_strand="+" ref_description="SGN-E720107 [FC09DD03]">
      <seq>gacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63115" stop="61406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62816" g_stop="62503" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61706" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="895" r_length="581" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E720107" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62816" e_stop="62503"/>
          <exon e_start="62286" e_stop="61706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATT</genome_strand>
        <mrna_strand>GACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280483" ref_strand="+" ref_description="SGN-E280483 [cLER-1-E13](-)">
      <seq>atccatattatcaaacttcatacacataaggcacatacatatgcacttacatacagaaatatcaaatacagtactaacaattatccttcagaatccaaaaaaaacaaaagtgaaggaaattaaaaacacttaaaaaccaaaacaacacagaaacacaatcataacatcccaaaagtaaaattaaaaaaacatttcatttcatttagtctttttccttctccttttcctcttcagcctttgagtggtatcctggtaatttctccttaattttgtccaaaaatcccttcttctccttcccctccgcctcatgctccaccgcagccggtggtggtggtggtggcgccgccacttcctccgtcttcttatgcccgccacctggcaatttctccttaattttgtctagaaatccttttttctcctctgtttcctcgtatttctcaactggaactgaggtatcctctgctttcgattcttccttgtgatcaccagatattttttccttaatcttatccttcaatcccttctttttcttcttcttgatcttctgtccatcctctccaatttcttgaaggggcccggtacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="61407" stop="62573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61707" g_stop="62273" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E280483" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61707" e_stop="62273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATATTATCAAACTTCATACACATAAGGCACATACATATGCACTTACATACAGAAATATCAAATACAGTACTAACAATTATCCTTCAGAATCCAAAAAAAACAAAAGTGAAGGAAATGAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCGCCGCCACTTCCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTTTGTCTAGAAATCCTTTTTTCTCCTCTGTTTCCTCGTATTTCTCAACTGGAACTGAGGTATCCTCTGCTTTCGATTCTTCCTTGTGATCACCAGATATTTTTTCCTTAATCTTATCCTTCAATCCCTTCTTTTTCTTCTTCTTGATCTTCTGTCCATCCTCTCCAATTTCTT</genome_strand>
        <mrna_strand>ATCCATATTATCAAACTTCATACACATAAGGCACATACATATGCACTTACATACAGAAATATCAAATACAGTACTAACAATTATCCTTCAGAATCCAAAAAAAACAAAAGTGAAGGAAATTAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCGCCGCCACTTCCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTTTGTCTAGAAATCCTTTTTTCTCCTCTGTTTCCTCGTATTTCTCAACTGGAACTGAGGTATCCTCTGCTTTCGATTCTTCCTTGTGATCACCAGATATTTTTTCCTTAATCTTATCCTTCAATCCCTTCTTTTTCTTCTTCTTGATCTTCTGTCCATCCTCTCCAATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723939" ref_strand="+" ref_description="SGN-E723939 [FC22CB01]">
      <seq>gcggccaatcggccgaattgacatccaattcaatctttaaactttcacttgttgataatatctttttgattgaaaacaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="333" r_length="311" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61710" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="910" r_length="577" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E723939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATG</genome_strand>
        <mrna_strand>ATCCAATTCAATCTTTAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAACAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719511" ref_strand="+" ref_description="SGN-E719511 [FC08AC12]">
      <seq>gcatccaattcaatatccaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttgataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63114" stop="61412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62815" g_stop="62503" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61712" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="889" r_length="576" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E719511" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62815" e_stop="62503"/>
          <exon e_start="62286" e_stop="61712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATA</genome_strand>
        <mrna_strand>GCATCCAATTCAATATCCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722437" ref_strand="+" ref_description="SGN-E722437 [FC17BB03]">
      <seq>gggcgattggcggccaatcggccgaattgacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="342" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61718" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="912" r_length="570" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722437" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTG</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718061" ref_strand="+" ref_description="SGN-E718061 [FC03CC02]">
      <seq>tcggccgaattgaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagaactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatgaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63105" stop="61418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62809" g_stop="62503" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="307" r_length="307" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61718" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="876" r_length="569" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E718061" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62809" e_stop="62503"/>
          <exon e_start="62286" e_stop="61718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTG</genome_strand>
        <mrna_strand>TCGGCCGAATTGAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGAACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722192" ref_strand="+" ref_description="SGN-E722192 [FC16CA11]">
      <seq>gggcgattggcggccaatcggccgaattgacatccaattcaatcttcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="342" r_length="311" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61725" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="904" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722192" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATG</genome_strand>
        <mrna_strand>ATCCAATTCAATCTTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255293" ref_strand="+" ref_description="SGN-E255293 [cLEG-30-G1]">
      <seq>caaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaagaaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62825" stop="61425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62525" g_stop="62503" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61725" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="585" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E255293" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62525" e_stop="62503"/>
          <exon e_start="62286" e_stop="61725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATG</genome_strand>
        <mrna_strand>CAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720316" ref_strand="+" ref_description="SGN-E720316 [FC10BG12]">
      <seq>acatccaattcaatattcaaactttcacttgttgataatcatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63115" stop="61427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62815" g_stop="62503" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61727" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="874" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E720316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62815" e_stop="62503"/>
          <exon e_start="62286" e_stop="61727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCAATTCAATATTCAAACTTTCACTTGTTGATAAT-ATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTA</genome_strand>
        <mrna_strand>ACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATCATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271171" ref_strand="+" ref_description="SGN-E271171 [cLEM-5-A19]">
      <seq>agatagagaagggattgaaggataagattaaggagggaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62537" stop="61428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62237" g_stop="61728" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E271171" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62237" e_stop="61728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGT</genome_strand>
        <mrna_strand>AGATAGAGAAGGGATTGAAGGATAAGATTAAGGAGGGAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E719641" ref_strand="+" ref_description="SGN-E719641 [FC08BG12]">
      <seq>gggcgaattggcggccaatcggccgaattgacatccaattcaatacccataatttcacttgttgataatatctttttgattgaaaaaacgaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="343" r_length="311" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61732" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="898" r_length="555" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E719641" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTAT</genome_strand>
        <mrna_strand>ATCCAATTCAATACCCATAATTTCACTTGTTGATAATATCTTTTTGATTGAAAAAACGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724774" ref_strand="+" ref_description="SGN-E724774 [FC25AE06]">
      <seq>gggcgattggcggccaatcggccgaattacatccaattcaatactctaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtgccttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="341" r_length="311" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61732" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="896" r_length="555" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E724774" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61732"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTAT</genome_strand>
        <mrna_strand>ATCCAATTCAATACTCTAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393663" ref_strand="+" ref_description="SGN-E393663 [TUS-42-J2]">
      <seq>tcaaatagcagctctagtagctcccgtgatgaagaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgacggataatattaagaaaaaaatatctggtgatcacaaggaagaatcaaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagacaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgacgcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcgaaggctgaagaggaaaaggagaaggaaaaagactacctgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttcggtgttgttttggtttttagatgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62826" stop="61438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62526" g_stop="62503" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61738" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="573" r_length="549" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E393663" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62526" e_stop="62503"/>
          <exon e_start="62286" e_stop="61738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTG</genome_strand>
        <mrna_strand>TCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................CGTGATGAAGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGACGGATAATATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCAAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGACAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGACGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCGAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTACCTGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCGGTGTTGTTTTGGTTTTTAGATGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724580" ref_strand="+" ref_description="SGN-E724580 [FC24CB12]">
      <seq>aatcggccgaattgacatccaattcaacattaaactttcacttgttgataatatctttttgattgaaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62829" g_stop="62503" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61739" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="875" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E724580" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62829" e_stop="62503"/>
          <exon e_start="62286" e_stop="61739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTG-AAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGACATCCAATTCAACATT-AAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722391" ref_strand="+" ref_description="SGN-E722391 [FC17AE07]">
      <seq>gggcgattggcggccaatcggccgaattgacatccaattcaatatccaatttttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaaggataattgttagtactgtatttgatatttctgtatgtaagtgcatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="342" r_length="311" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61741" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="889" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722391" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTAT</genome_strand>
        <mrna_strand>ATCCAATTCAATATCCAATTTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256777" ref_strand="+" ref_description="SGN-E256777 [cLEG-40-K19]">
      <seq>caaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaagaaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaaaggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62825" stop="61464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62525" g_stop="62503" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61764" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="546" r_length="523" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E256777" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62525" e_stop="62503"/>
          <exon e_start="62286" e_stop="61764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATT</genome_strand>
        <mrna_strand>CAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAAGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240135" ref_strand="+" ref_description="SGN-E240135 [cLED-32-F14]">
      <seq>aggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggatgggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttggtttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagtactgtatttgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62507" stop="61465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62207" g_stop="61765" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E240135" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62207" e_stop="61765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATAT</genome_strand>
        <mrna_strand>AGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGATGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGGTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718696" ref_strand="+" ref_description="SGN-E718696 [FC05CA03]">
      <seq>ggccaaatcggccgaattgaatcacatccaattccatattcaaactttcacttgttgataatatctttttgattgacaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaaggataattgttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63124" stop="61478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62839" g_stop="62503" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61778" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="845" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E718696" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62839" e_stop="62503"/>
          <exon e_start="62286" e_stop="61778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTA</genome_strand>
        <mrna_strand>GGCCAAATC-GGCCGAATTGAATCACATCCAATTCCATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGACAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288749" ref_strand="+" ref_description="SGN-E288749 [cLES-17-C5]">
      <seq>gaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggngccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaanggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttaatttccttcacttttgttttttttggattctgaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62505" stop="61489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62205" g_stop="61789" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E288749" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62205" e_stop="61789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGAT</genome_strand>
        <mrna_strand>GAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGNGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAANGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTAATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718417" ref_strand="+" ref_description="SGN-E718417 [FC04CD09]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggttgcggtggagcatgaggcggaggggaaggagaaaaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63122" stop="61493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="358" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61793" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="852" r_length="494" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E718417" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAA</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGTTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721167" ref_strand="+" ref_description="SGN-E721167 [FC12DH10]">
      <seq>aatcggccgaattcccatggggatccgatgacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgtttttttttggattctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63122" stop="61493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="343" r_length="311" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61793" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="838" r_length="495" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E721167" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTG-TTTTTTTTGGATTCTGAA</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTTGGATTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E720677" ref_strand="+" ref_description="SGN-E720677 [FC11CA08]">
      <seq>gatcacatccaattcactattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63118" stop="61497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62819" g_stop="62503" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61797" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="807" r_length="490" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E720677" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62819" e_stop="62503"/>
          <exon e_start="62286" e_stop="61797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTC</genome_strand>
        <mrna_strand>GATCACATCCAATTCACTATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722073" ref_strand="+" ref_description="SGN-E722073 [FC16AE03]">
      <seq>attggcggccaatcggccgaattgaatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaaaaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttttttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63124" stop="61500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62819" g_stop="62503" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="341" r_length="317" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61800" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="828" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E722073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62819" e_stop="62503"/>
          <exon e_start="62286" e_stop="61800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGA</genome_strand>
        <mrna_strand>AATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAAAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243178" ref_strand="+" ref_description="SGN-E243178 [cLEE-2-N24]">
      <seq>ggggaaggagaagaagggatttttggacaaaattaaggagaaattaccacgatacgggtcaacggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaatactacttttgggatgaaatgattgtgtttctgcgttgttttggtttttaagtgtatttcatttccttcactttggtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62305" stop="61503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62005" g_stop="61803" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E243178" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62005" e_stop="61803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTT</genome_strand>
        <mrna_strand>GGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCACGATACGGGTCAACGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATACTACTTTTGGGATGAAATGATTGTGTTTCTGCGTTGTTTTGGTTTTTAAGTGTATTTCATTTCCTTCACTTTGGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726601" ref_strand="+" ref_description="SGN-E726601 [LA12BB12]">
      <seq>ctttttttttattactatatcgaaaataaaaaaatcttaatcagcgtaacgtccgtgtttgtaattgctataaaaagcgcaccaagtctcatatatttcaatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgaatgtgtttctgtgntgttttggttttaagggtttttcatttcctcacttttgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63218" stop="61505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62918" g_stop="62503" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61805" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="896" r_length="480" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E726601" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62918" e_stop="62503"/>
          <exon e_start="62286" e_stop="61805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTT</genome_strand>
        <mrna_strand>CTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGAATGTGTTTCTGTGNTGTTTTGG-TTTTAAGGGTTTTTCATTTCC-TCACTTTTGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717956" ref_strand="+" ref_description="SGN-E717956 [FC03AH08]">
      <seq>gcgattggcggccaatcggccgaattgacatccaattcaatattcaaactttcacttgttgataatatctgttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63119" stop="61506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62813" g_stop="62503" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="341" r_length="312" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61806" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="822" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E717956" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62813" e_stop="62503"/>
          <exon e_start="62286" e_stop="61806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCT-TTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTT</genome_strand>
        <mrna_strand>ATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTGTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723691" ref_strand="+" ref_description="SGN-E723691 [FC21BE06]">
      <seq>tggcggccaaatcggccgaattctgaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaaaaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggtttttaagtgtttttcatttccttcacttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63104" stop="61510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62797" g_stop="62503" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="320" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61810" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="797" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E723691" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62797" e_stop="62503"/>
          <exon e_start="62286" e_stop="61810"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGT</genome_strand>
        <mrna_strand>AAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290910" ref_strand="+" ref_description="SGN-E290910 [cLET-8-C17]">
      <seq>gagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaatggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgatgaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgtgatgttatgattgtgtttctgagttgttttggtttttaagtgattttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62394" stop="61526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62094" g_stop="61827" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E290910" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62094" e_stop="61827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTC</genome_strand>
        <mrna_strand>GAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAATGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGATGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGTGATGTTATGATTGTGTTTCTGAGTTGTTTTGGTTTTTAAGTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723109" ref_strand="+" ref_description="SGN-E723109 [FC19BG06]">
      <seq>actttcacttgttgataatatctttttgattgacaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggttgcggtggagcatgaggcggaggggaaggaaaaaaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttctgtgttgttttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63095" stop="61540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62795" g_stop="62503" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61840" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="740" r_length="447" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E723109" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62795" e_stop="62503"/>
          <exon e_start="62286" e_stop="61840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTT</genome_strand>
        <mrna_strand>ACTTTCACTTGTTGATAATATCTTTTTGATTGACAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGTTGCGGTGGAGCATGAGGCGGAGGGGAAGGAAAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243631" ref_strand="+" ref_description="SGN-E243631 [cLED-34-H3]">
      <seq>gctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttactttggggatgttatgattgtgtttctgtgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62586" stop="61548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62516" g_stop="62503" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61848" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="453" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E243631" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62516" e_stop="62503"/>
          <exon e_start="62286" e_stop="61848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGT</genome_strand>
        <mrna_strand>GCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTGGGGATGTTATGATTGTGTTTCTGTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369766" ref_strand="+" ref_description="SGN-E369766 [TUS-25-O15]">
      <seq>caaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaagaaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgattgtgtttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62825" stop="61555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62525" g_stop="62503" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61855" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="455" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E369766" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62525" e_stop="62503"/>
          <exon e_start="62286" e_stop="61855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCT</genome_strand>
        <mrna_strand>CAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGAAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726418" ref_strand="+" ref_description="SGN-E726418 [LA11DA07]">
      <seq>cccttctttttttttattactatatcgaaaataaaaaaatcttaatcagcgtaacgtccgtgtttgtaattgctataaaaagcgcaccaagtctcatatatttcaatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63221" stop="61563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62923" g_stop="62503" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61863" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="845" r_length="424" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E726418" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62923" e_stop="62503"/>
          <exon e_start="62286" e_stop="61863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCCTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATT</genome_strand>
        <mrna_strand>CCCTTCTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365433" ref_strand="+" ref_description="SGN-E365433 [cLPT-2-G4]">
      <seq>gaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaaccacaaggaggaggaaaagaaagaagagaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacttcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcggacataagaagacggaggaagtagcggcgccgccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaaaaagggatttttggacaaaattaaggagaaattaccagggtaccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaattaaatgaaatgtttttttaattttacttttgggatgttatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62937" stop="61563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62637" g_stop="62503" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.807"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.56"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61863" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="572" r_length="424" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E365433" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62637" e_stop="62503"/>
          <exon e_start="62286" e_stop="61863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACC-CAAGGAGGAGG---A-AAAGAA-A-------CTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATT</genome_strand>
        <mrna_strand>GAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCACAAGGAGGAGGAAAAGAAAGAAGAGAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACTTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGACATAAGAAGACGGAGGAAGTAGCGGCGCCGCCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAAAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGGTACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATTAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255480" ref_strand="+" ref_description="SGN-E255480 [cLEG-30-G18]">
      <seq>gagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggagggggagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62895" stop="61565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62595" g_stop="62503" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61865" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="515" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E255480" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62595" e_stop="62503"/>
          <exon e_start="62286" e_stop="61865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGA</genome_strand>
        <mrna_strand>GAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGGGGAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233621" ref_strand="+" ref_description="SGN-E233621 [cLED-14-K3]">
      <seq>aggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcggtcataagaagacggaggaagtggcggngccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcaaaggctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtttttttaattttacttttgggatgttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62507" stop="61566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62207" g_stop="61866" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E233621" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62207" e_stop="61866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATG</genome_strand>
        <mrna_strand>AGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGTCATAAGAAGACGGAGGAAGTGGCGGNGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E281598" ref_strand="+" ref_description="SGN-E281598 [cLEL-1-P14](-)">
      <seq>atcccaaaagtaaaattaaaaaaacatttcatttcatttagtctttttccttctccttttcctcttcagcctttgagtggtatcctggtaatttctccttaattttgtccaaaaatcccttcttctccttcccctccgcctcatgctccaccgcagccggtggtggtggtggtggcgccgccacttcctccgtcttcttatgcccgccacctggcaatttctccttaattgtgtctagaaatccttttttctcctctgtttcctcgtatttctcaactggaactgaggtatcctctgctttcgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="61572" stop="62482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61872" g_stop="62181" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E281598" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61872" e_stop="62181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCGCCGCCACTTCCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTTTGTCTAGAAATCCTTTTTTCTCCTCTGTTTCCTCGTATTTCTCAACTGGAACTGAGGTATCCTCTGCTTTCGATTCTTC</genome_strand>
        <mrna_strand>ATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCGCCGCCACTTCCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTGTGTCTAGAAATCCTTTTTTCTCCTCTGTTTCCTCGTATTTCTCAACTGGAACTGAGGTATCCTCTGCTTTCGCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E537541" ref_strand="+" ref_description="SGN-E537541 [TUS-56-D3]">
      <seq>caaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaattaaggagaaattacaggataccactcaaggctgaagaggaaaggagaaggaaaagactaaatgaatgaaagttttttttattttacttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63098" stop="61574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62798" g_stop="62503" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61874" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="702" r_length="406" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E537541" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62798" e_stop="62503"/>
          <exon e_start="62286" e_stop="61874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGG</genome_strand>
        <mrna_strand>CAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGAC-AAATTAAGGAGAAATTA-CAGGATACCACTC-AAGGCTGAAGAGG-AAAGGAGAAGG-AAAAGACTAAATG-AATGAAA-GTTTTTTTTATTTTACTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554419" ref_strand="+" ref_description="SGN-E554419 [cTSC-4-D9]">
      <seq>actcctttttttttattactatatcgaaaataaaaaaatcttaatcagcgtaacgtccgtgtttgtaattgctataaaaagcgcaccaagtctcatatatttcaatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattaccaggataccactcanaggctgaagaggaaaaggagaaggaaaaagnactaatgaaatgaaatgttttttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63222" stop="61587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62922" g_stop="62503" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61886" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="821" r_length="401" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E554419" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62922" e_stop="62503"/>
          <exon e_start="62286" e_stop="61886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAAT</genome_strand>
        <mrna_strand>ACTCCTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCANAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGNACTAATGAAATGAAATGTTTTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250471" ref_strand="+" ref_description="SGN-E250471 [cLEG-18-G24]">
      <seq>ttgtctgaaaaagtttacgtaagtgaagaagtggaacccaaggagggggaaaagaaacttcatcgatcaaatagcatctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgacgcggaggggaaggagaagaaaggatttttggacaaaattaaggagaaattaccaggataccactcaaaagctgaagaggaaaaggagaaggaaaaagactaaatgaaatgaaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="62892" stop="61594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62592" g_stop="62503" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61894" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="483" r_length="393" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E250471" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62592" e_stop="62503"/>
          <exon e_start="62286" e_stop="61894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTT</genome_strand>
        <mrna_strand>TTGTCTGAAAAAGTTTACGTAAGTGAAGAAGTGGAACCCAAGGAGGGGGAAAAGAAACTTCATCGATCAAATAGCATCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGACGCGGAGGGGAAGGAGAAGAAAGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAAGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547909" ref_strand="+" ref_description="SGN-E547909 [TUS-56-D7]">
      <seq>caaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataagaagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggagcatgaggcggaggggaaggagaagaagggatttttggacaaaattaaggagaaattacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63098" stop="61657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62798" g_stop="62503" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="61957" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="626" r_length="330" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E547909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62798" e_stop="62503"/>
          <exon e_start="62286" e_stop="61957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCA</genome_strand>
        <mrna_strand>CAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E723854" ref_strand="+" ref_description="SGN-E723854 [FC22AH01]">
      <seq>gaatccaattcaataccttatatttccttgttgataatatctttttgattgaaaaaccgaaaaaaaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaaaaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccgtaagtctctctttcgttcatcattaatatttacgtcaaatcaataaatataacatacgccttttatgatgatacatatattatacttttacactatttgttttctcaacaaagagtcgagtaaatttaccgtttactttttctagcgggtatgaataaattataggtgatcattgatatgttgtacgtagattatatatgttgattgatttgcaaagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcaaaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataataagacggaggaagtggcggcgccaccaccaccaccaccggctgcggtggaccatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63113" stop="61712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62815" g_stop="62010" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E723854" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62815" e_stop="62010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGG</genome_strand>
        <mrna_strand>GAATCCAATTCAATACCTTATATTTC-CTTGTTGATAATATCTTTTTGATTGAAAAACCGAAAAAAAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAAAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAAAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAAAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAATAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGACCATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E721625" ref_strand="+" ref_description="SGN-E721625 [FC14CE07]">
      <seq>tccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcttgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcacctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaaaaagaaaaagaagggattgaaggataatattaaggaaaaaatatctggtgatcacaaggaaaaatcgaaagcagaggatacctcagttcctgttgagaaatacgaggaaccagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcataaaaaaacggaggaagtggcggcgccaccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63015" stop="61738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62715" g_stop="62503" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62038" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="462" r_length="249" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E721625" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62715" e_stop="62503"/>
          <exon e_start="62286" e_stop="62038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCA</genome_strand>
        <mrna_strand>TCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCTTGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCACCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAAAAGAAAAAGAAGGGATTGAAGGATAATATTAAGGAAAAAATATCTGGTGATCACAAGGAAAAATCGAAAGCAGAGGATACCTCAGTTCCTGTTGAGAAATACGAGGAACCAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAAAAAACGGAGGAAGTGGCGGCGCCACCACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728414" ref_strand="+" ref_description="SGN-E728414 [LA17DA03]">
      <seq>actctatattcaaactttcacttgttgataatatctttttgattaaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccgtaagtctctctttcgttcatcattaatatttacgtcaaatcaataaatataacatacgccttttatgatgatacatatattatacttttacactatttgttttctcaacaaagagtcgagtaaatttaccgtttactttttctagcgggtatgaataaattataggtgatcattgatatgttgtacgtagattatatatgttgattgatttgcagagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagacatacgaggaaacagaggagaaaaaaggatttctagacaaaattaaggagaaattgccaggtggcgggcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63108" stop="61770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62808" g_stop="62070" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E728414" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62808" e_stop="62070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATA</genome_strand>
        <mrna_strand>ACTCTATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTAAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGACATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E250903" ref_strand="+" ref_description="SGN-E250903 [cLEG-13-C4]">
      <seq>ttcacttgttgatgatatctttttgattgtaaaaaagaagattaagtatggctgatgaatacgaacagaacggggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtgtgaaaaagttaacgtaagtgaagaagtggaacccaaggaagaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataatattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagctgaggatacctcagttccagttgagaaatacgaggaaacatatgagaaaaaaggatttctagacaaaattaaggagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63092" stop="61787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62792" g_stop="62503" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62087" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="490" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E250903" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62792" e_stop="62503"/>
          <exon e_start="62286" e_stop="62087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATT</genome_strand>
        <mrna_strand>TTCACTTGTTGATGATATCTTTTTGATTGTAAAAAAGAAGATTAAGTATGGCTGATGAATACGAACAGAACGGGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTGTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAAGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAATATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCTGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACATATGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549853" ref_strand="+" ref_description="SGN-E549853 [TUS-6-L15]">
      <seq>ttcacttgttgataatatctttttgattgaaaaaattattagccgtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggatgaggaaaagaaacttcatcgatcaaatatcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacctcagttccagttgagaaatacgaggaaacagaggagaaaaaaggatttctagacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63092" stop="61800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62792" g_stop="62503" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62100" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="476" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E549853" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62792" e_stop="62503"/>
          <exon e_start="62286" e_stop="62100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAA</genome_strand>
        <mrna_strand>TTCACTTGTTGATAATATCTTTTTGATTG-AAAAAATTATTAGCCGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGATGAGGAAAAGAAACTTCATCGATCAAATATCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337784" ref_strand="+" ref_description="SGN-E337784 [cTOE-17-N1]">
      <seq>tatctttttgattgaaattaagaagaagaagtatggctgatcaatacgaacagaacacggcatccgctgaagagactgctggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgactgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtaactccagtgatgaagaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggataagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagacgatacctcagttccagttgagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63077" stop="61839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62777" g_stop="62503" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62139" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="423" r_length="148" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E337784" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62777" e_stop="62503"/>
          <exon e_start="62286" e_stop="62139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAAT</genome_strand>
        <mrna_strand>TATCTTTTTGATTGAAATTAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACACGGCATCCGCTGAAGAGACTGCTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGACTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAACTCC........................................................................................................................................................................................................................AGTGATGAAGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGACGATACCTCAGTTCCAGTTGAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725826" ref_strand="+" ref_description="SGN-E725826 [LA05DF01]">
      <seq>tgtaattgctataaaaagcgcaccaagtctcatatatttcaatcacatccaattcaatattcaaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaagaagggattgaaggactagattaaggaaaaaatatctggtgatcacaaggaagaatcgaaagcagaggatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63159" stop="61858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62859" g_stop="62503" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62158" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="486" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E725826" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62859" e_stop="62503"/>
          <exon e_start="62286" e_stop="62158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACC</genome_strand>
        <mrna_strand>TGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGACTAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337841" ref_strand="+" ref_description="SGN-E337841 [cTOE-14-G11]">
      <seq>tctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgttggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaaaagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagttgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggaggaaaagaaacttcatcgatcaaatagcagctctagtagctccagtgatgaggaggaagaaattggagaggatggacagaagatcaagaagaagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63075" stop="61930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62775" g_stop="62503" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62286" g_stop="62230" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="330" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E337841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62775" e_stop="62503"/>
          <exon e_start="62286" e_stop="62230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAG</genome_strand>
        <mrna_strand>TCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC........................................................................................................................................................................................................................AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231802" ref_strand="+" ref_description="SGN-E231802 [cLED-7-G1]">
      <seq>aaactttcacttgttgataatatctttttgattgaaaaaaagaagaagaagtatggctgatcaatacgaacagaacaaggcatccgttgaagagactgctggtaccaacgtggaagctactgatcgtggtttgtttgatttcattggaaaaacagaagaggaaaaaccaagtcatgctcatgaagaagaggcaatttcatctgagtcgtctgaaaaagttaacgtaagtgaagaagtggaacccaaggaggatgaaaagacacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="63097" stop="62232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62797" g_stop="62532" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E231802" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62797" e_stop="62532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTC</genome_strand>
        <mrna_strand>AAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGCTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAACAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTCGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGATGAAAAGACACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275634" ref_strand="+" ref_description="SGN-E275634 [cLEN-18-G9]">
      <seq>aaacaaatatctcaaaaatagttcaggtaagaaaatacaaaatttataatattccaaagaaaattaactggtatcgaatttcttctttacagcaagtcaaaattccttccgccggcggccgtgatcccgtcgccggaaggaacgctgttctgtagataccacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaattctgtcttttctttttttcttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67203" stop="69354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67503" g_stop="67858" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="69054" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="660" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E275634" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67503" e_stop="67858"/>
          <exon e_start="68752" e_stop="69054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATA-CACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTG</genome_strand>
        <mrna_strand>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACCACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275733" ref_strand="+" ref_description="SGN-E275733 [cLEN-18-L24]">
      <seq>aaacaaatatctcaaaaatagttcaggtaagaaaatacaaaagttataatattccaaagaaaattaactggtatcgaatttcttctttacagcaagtcaaaattccttccgccggcggccgtgatcccgtcgccggaaggaacgctgttctgtagatacacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67203" stop="69229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67503" g_stop="67858" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="68929" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="534" r_length="178" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E275733" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67503" e_stop="67858"/>
          <exon e_start="68752" e_stop="68929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAG</genome_strand>
        <mrna_strand>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAAGTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305792" ref_strand="+" ref_description="SGN-E305792 [cLEX-14-D5]">
      <seq>ggtaagaaaatacaaaatttataatattccaaagaaaattaactggtatcgaatttcttctttacagcaagtcaaaattccttccgccggcggccgtgatcccgtcgccggaaggaacgctgttctgtagatacacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaattctgncttttctttttttcttttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67228" stop="69354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67528" g_stop="67858" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="69054" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="634" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E305792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67528" e_stop="67858"/>
          <exon e_start="68752" e_stop="69054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTG</genome_strand>
        <mrna_strand>GGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGNCTTTTCTTTTTTTCTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361379" ref_strand="+" ref_description="SGN-E361379 [cLPP-6-G12]">
      <seq>tttcttctttacagtaagtcaaaattccttccgccggcggccgtgatcccgtcgccggaaggaacgctgttctgtagatacacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaggaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacacatctaaagcttgcatttatcctagtaagtactagcttgctattgcttgcatgtgtgacaattgcgaaacaagttacagaagccaggaagaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67281" stop="69230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67581" g_stop="67858" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="68930" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="457" r_length="179" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E361379" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361379" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67581" e_stop="67858"/>
          <exon e_start="68752" e_stop="68930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGC</genome_strand>
        <mrna_strand>TTTCTTCTTTACAGTAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAGGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACACATCTAAAGCTTGCATTTATCCTAGTAAGTACTAGCTTGCTATTGCTTGCATGTGTGACAATTGCGAAACAAGTTACAGAAGCCAGGAAGAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236336" ref_strand="+" ref_description="SGN-E236336 [cLED-13-C17]">
      <seq>aagtcaaaattccttccgccggcggccgtgatcccgtcgccggaaggaacgctgttctgtagatacacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67296" stop="69238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67596" g_stop="67858" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="68938" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="450" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E236336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67596" e_stop="67858"/>
          <exon e_start="68752" e_stop="68938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATG</genome_strand>
        <mrna_strand>AAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241877" ref_strand="+" ref_description="SGN-E241877 [cLED-27-O16]">
      <seq>tacacaaatttcagacggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67359" stop="69296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67659" g_stop="67858" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="68996" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="445" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E241877" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67659" e_stop="67858"/>
          <exon e_start="68752" e_stop="68996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAAC</genome_strand>
        <mrna_strand>TACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349367" ref_strand="+" ref_description="SGN-E349367 [cTOS-1-K22]">
      <seq>ggaattgcatttgatagattgcaaaaaagtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttagtaagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67375" stop="69327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67675" g_stop="67858" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="69026" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="459" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="460" polyA_stop="469"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E349367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67675" e_stop="67858"/>
          <exon e_start="68752" e_stop="69026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACA</genome_strand>
        <mrna_strand>GGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E717246" ref_strand="+" ref_description="SGN-E717246 [FB19CD03]">
      <seq>gtttaaagaagaggagagaaagcagtaaattggaatcatgataacgcgatcgaatttggcggagcagctgagagagtatcagattcgatcaaagcacgattgggcttcggtctccttcttttcctccacctctaatctcacatctacagcttcaagggcggatgtcgtcatgtttgtaatatgtgagctggttatcttggcactcctggttttctctgtagtttcattgtacttcacgcatctaaagcttgcatttatcttaataagtactagcttgctattgcttgtatgtgtgacaattgcaaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaattctgtcttttctttttttcttttctgaattccttttgacacaagtaattgtagtagaggcaagctgattaaatggtgctgattttgagatcatttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="67403" stop="69432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67703" g_stop="67858" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68752" g_stop="69126" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="531" r_length="375" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="532" polyA_stop="549"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E717246" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67703" e_stop="67858"/>
          <exon e_start="68752" e_stop="69126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAGGTATTCAATCAATTCATTTCTAGCTTCTGCAATCATTTTATGAAAACCTACATTTACTAATTCCTGAGCCAGATCCAGGATTTTAATCAGTGAATTAGTGCACTTCTATGGCTAAATATTGATTTTGTTTATGAAAATTTATCATTTTGGATCGATAATTGTGAGGTCTCAGGTTTAAATCCCAGCTTAGACTAAAACACAAGGTAGCTGGTAAATGTTTGTGATGGGAGTTAATAGGTATCCCGTGAAATAATTGATGTGTGCACTATAGCTTGCCTGGACACTAGGATTGCCAATTTTTTTCAATCATCACGGATAGTTCGTGTTATCAAATCAACATGTACTTCTGAAAGTATTTTTTTGTTGTTGATATTATTAGGAAATTTTTGTTTGTCAAAGTTTAGGATTACGTGATTGAATGTTACATATGAACTTTATATGTATAACTCGAAATGAGACGTGGAAATTGTTAATTCATACTATGCCTTTTGCACCTCACTTTTCTGCACCTAGTAGAGTTTTGAAGCAAGTAAATTATTGTATGGTCAATAAAACGAGGAAGGTGAAATGCCCAACTTCGAAGCAGTGCAGTTGAATCTTTAAATCAATGTAACAACTTGGGATTAATTTGGAGAAAGCAAAATGTAGAATGGAAAATGTTCAGCTCCGATCTTGTTTACAATGTTGTATTTCATTGAGGGTGAACTGTATGAAGAATGAATGAATTGCATCTTTGCGCTTGGTCCTAGAACTTTACTTTTGTGGAAGAACTAACAGCATGCTAGCTGATTTTATCCATTCCTTAACAGTTTAGTGCATAATATCATTGCAACTTCTGACTGTTTGTTATTCTGAGCCTTCTTTTCTCTTATTTCCTTCTTCTATTGATGCAGGGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGAC</genome_strand>
        <mrna_strand>GTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAATAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349839" ref_strand="+" ref_description="SGN-E349839 [cTOS-3-M2]">
      <seq>caaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaattctgtcttttctttttttcttttctgaattccttttgacacaagtaattgtagtagaggcaagctgattaaatggtgctgattttgagatcatttgacatcagagctgtcatttttgttatatacttcataggtgtttgggcttgttgataaagcttcatgtaagtttaacctcagtcctaaaatgtaattctcgtgtaccttcatacttaaatctctattcagtcttacattttattgtcacaatggaaggcatttgttctgtcaacattgttcctaaatcatgaagaatattgatctttgatgtctgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="68598" stop="69639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68898" g_stop="69347" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E349839" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68898" e_stop="69347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCACTTTATTT</genome_strand>
        <mrna_strand>CAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354594" ref_strand="+" ref_description="SGN-E354594 [cTOS-17-D21]">
      <seq>caaagcaagttacagaagccaggaagaagaagcgaagaatgcttcttccattatcaatgtagaagtgcgtgatggaaaatcttttttgctatgcccaacttatattttaatgtgaaatctcaaccaacaattctgtcttttctttttttcttttctgaattccttttgacacaagtaattgtagtagaggcaagctgattaaatggtgctgattttgagatcatttgacatcagagctgtcatttttgttatatacttcataggtgtttgggcttgttgataaagcttcatgtaagtttaacctcagtcctaaaatgtaattctcgtgtaccttcatacttaaatctctattcagtcttacattttattgtcacaatggaaggcatttgttctgtcaacattgttcctaaatcatgaagaatattgatctttgatgtctgcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="68598" stop="69639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68898" g_stop="69347" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E354594" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68898" e_stop="69347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCACTTTATTT</genome_strand>
        <mrna_strand>CAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200845" ref_strand="+" ref_description="SGN-E200845 [cLEC-5-G3]">
      <seq>aaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaatttatacacttctgtgtatatagcgagataggcgagcgagaatggagagtggcgagcgagatttttgggagggagacgcctgacaaactttagctaacgtttgctatggagcacaattaaatcaaactctagctactccatttagttagattactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="78068" stop="77022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77768" g_stop="77322" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E200845" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77768" e_stop="77322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTATGTATATTGCATAGTTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATTTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAA-TTATACACTTCTGTATATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGAC-ACTGGCAAATTTTAGCGAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</genome_strand>
        <mrna_strand>AAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAATTTATACACTTCTGTGTATATAGCGAGATAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGGGAGACGCCTGACAAACTTTAGCTAACGTTTGCTATGGAGCACAATTAAATCAAACTCTAGCTACTCCATTT-AGTTAGATTACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="78069" stop="77174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77769" g_stop="77448" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77769" e_stop="77448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAGTTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATTTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAA-TTATACACTTCTGTATATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="78069" stop="77174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77769" g_stop="77479" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77769" e_stop="77479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAGTTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATTTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240074" ref_strand="+" ref_description="SGN-E240074 [cLED-32-H22]">
      <seq>taatttccagtttattcaaccactgaagcttttcgggagcagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataagacttcttagtctttctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77892" stop="81058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78192" g_stop="78364" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80758" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="540" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E240074" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78192" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCT</genome_strand>
        <mrna_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242782" ref_strand="+" ref_description="SGN-E242782 [cLED-31-D3]">
      <seq>taatttccagtttattcaaccactgaagcttttcgggagcagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataagacttcttagtctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77892" stop="81054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78192" g_stop="78364" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80754" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="536" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E242782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78192" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTC</genome_strand>
        <mrna_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236655" ref_strand="+" ref_description="SGN-E236655 [cLED-13-L24]">
      <seq>taatttccagtttattcaaccactgaagcttttcgggagcagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagntgtgttttttgttcaataaagaatcctatgaagtggataattggttttgcatgtcatttttgttttaattgagctgtttgtccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77892" stop="80963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78192" g_stop="78364" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="219" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="267" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80663" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="445" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E236655" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78192" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCA</genome_strand>
        <mrna_strand>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGNTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGGTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312593" ref_strand="+" ref_description="SGN-E312593 [cLEZ-20-O10]">
      <seq>ttcaaccactgaagcttttcgggagcagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77906" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78206" g_stop="78364" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="205" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="253" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80747" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="515" r_length="262" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E312593" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78206" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTA</genome_strand>
        <mrna_strand>TTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295850" ref_strand="+" ref_description="SGN-E295850 [cLET-25-P18]">
      <seq>gagcaccgattaacgaagagaagacaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtgggtttggattctataccgggccaagaaagatggtcctgtagcgttgagctggatgcatccctgggaaggccatggccatggtcatgaccattagatatgctgcttaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcaattgaatatctttcgaaacagttgtgctttttgctcaataaagaatcctatgaagtggataattggttgtgcatgtcattagtttgtcccattgattctgcattgtcgtgaacaacttctctgtttgtatttccaacttgacaatataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77928" stop="81024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78228" g_stop="78364" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="183" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="231" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80724" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="454" r_length="223" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E295850" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78228" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAA</genome_strand>
        <mrna_strand>GAGCACCGATTAACGAAGAGAAGACAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGGATTCTATACCGGGCCAAGAAAGATGGTCCTGTAGCGTTG.........................................................................................AGCTGGATGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGCTTAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAATTGAATATCTTTCGAAACAGTTGTGCTTTTTGCTCAATAAAGAATCCTATGAAGTGGATAATTG--GTTG--TG-CA----TG---TCATT-A---GTTTGTCCCATTGATTCTGCATTGTCGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539262" ref_strand="+" ref_description="SGN-E539262 [TUS-58-O23](-)">
      <seq>cagcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataagacttcttagtctttctcctccaaaaagaaaaaaaaaaaactcgaggggggcccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77931" stop="81062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78231" g_stop="78364" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="180" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="228" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80761" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="488" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="489" polyA_stop="505"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E539262" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78231" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</genome_strand>
        <mrna_strand>CAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTC------------ATT----TGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283486" ref_strand="+" ref_description="SGN-E283486 [cLER-12-N14]">
      <seq>agcgattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataagacttcttagtctttctcctccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77932" stop="81062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78232" g_stop="78364" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="179" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="227" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80761" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="487" r_length="260" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E283486" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78232" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</genome_strand>
        <mrna_strand>AGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTC------------ATT----TGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714954" ref_strand="+" ref_description="SGN-E714954 [FB12DF11]">
      <seq>cctacaaaggaagagaagagaaagagagatgggaggtggagacggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77934" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78234" g_stop="78364" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="132" r_length="131" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="178" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="226" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80745" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="486" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E714954" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78234" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCT</genome_strand>
        <mrna_strand>CTACAAAGGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGACGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714847" ref_strand="+" ref_description="SGN-E714847 [FB12CD10]">
      <seq>gattaacgaagagaagagaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgctggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77935" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78235" g_stop="78364" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="177" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="225" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80745" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="485" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E714847" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78235" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATG-TGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCT</genome_strand>
        <mrna_strand>GATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340154" ref_strand="+" ref_description="SGN-E340154 [cTOF-2-K1]">
      <seq>gaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77952" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78252" g_stop="78364" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="159" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="207" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80747" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="469" r_length="262" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E340154" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78252" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTA</genome_strand>
        <mrna_strand>GAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E714480" ref_strand="+" ref_description="SGN-E714480 [FB11CC06]">
      <seq>gaaagagagatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77952" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78252" g_stop="78364" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="159" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="207" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80746" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="468" r_length="261" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E714480" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78252" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTT</genome_strand>
        <mrna_strand>GAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307101" ref_strand="+" ref_description="SGN-E307101 [cLEY-15-N17]">
      <seq>agatgggaggtggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgagccgtcatgtggttttggattttataccgggccaacaaagatggtcctgtcatgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcaggtgaatatctttcgaaacagttgtgttttttgttcaataaagaatgctatgaactggataattgattctgcatgtcatttttgttgtaattgagctgttagacccattgattctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77959" stop="81023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78259" g_stop="78364" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="152" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="200" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80723" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="438" r_length="238" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E307101" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78259" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTA</genome_strand>
        <mrna_strand>AGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGAGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAACAAAGATGGTCCTGTCATGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGGTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATGCTATGAACTGGATAATTGATTCTGCATGTCATTTTTGTTGTAATTGAGCTGTTAGACCCATTGATTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243155" ref_strand="+" ref_description="SGN-E243155 [cLEE-2-M18]">
      <seq>ggagatggacatggcgtgaccttcaaaggcatcactgtacatcaacctaagcgttggcactccgttaccggaaaaggattgtgtgccgtcatgtggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagntaatttttatacataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="77970" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78270" g_stop="78364" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="141" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="189" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80486" g_stop="80738" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="442" r_length="253" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="453"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E243155" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78270" e_stop="78364"/>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTGGTAATTTCTCCTAACCCTAGCCCCTTTCTGTTGTCATTTCATTTCCCCTGTTTTCCTATTGATTTTACGAGCTGTATCGATTTGATATTGTAATGCTGTCAGATCAGAGATTTAAGAATTAGATTTGATTAGAATATATATTAGGGAACCTTATGGCGCTTAAGTGTGTGATGTATGGGTTGATCCATTGTTGAGGATGAGATTTTCTCTGAACAAAGTTTAACTCATTATTTGTTTTGCTTAGCTGATAAATTACCAGGTTCATATAGTGTGTGCATATGATGGAATTTTGTTGATAATAGATATTGCCAGCAAAGGCAGATGTGGCACTTGTAAAATGCACCATGTAGAGGCTCATTGGGCATGTTAGACATGCCTTAAGTAGCATTCTACAGGAAATGTTGAACAAATGAGTCTTCCCCTTAAAAAAGTGATTTTGACGAAAAGATGCCAATTATAATACAAGAAAAGTACTACTACTTGTCGATTTAATAAGTTTGGTCGATTATATGACTATTCACCATCTATATCACTCCAGTTCGAAAATCCGTATTGTGAGGATTTGCCCATTGTCCCAGCTTGTGTTCATTGGGCTTTATCGGCGGAAAGGCCCCTTCTCCAATTTTTATTTATCAAATTGTGCTTGGGGGCTGATTAAATTCAGTTGCACTGCTACCTTGGGCTCCCTGCTGGAGGTTTAGTTGGTTCAGAGAAATAACTCAACTTCATTGAAATGAAAAAGAAGAGAGGAATAGCTTGTGATTTTAATCACTGATGCCTTACCTTAAACTTTGCATTTTATTGGCGCATTTAACTAATAAGCAATAGTCAGAGGGTATACAGCAGAATGGTTATCTTAAATGTTATAGACCTTAAGTATATAATAATGTGCCAACAACTCCCGAGGATGTGGCTTAATAGACAATGAAGTGGGTTGAGAACCATGAGGTCCCTTGTTCAAACCCAGCGAGGACAAATCATTAGGTGATTTCTTCCCATGTTTCAGTCTTGATGGACAGTTGCTTGGTACCTATGCTGGTGGGAGGTAGCAAATACCCCGTGAAATTAGTTGAGGTGTGCCTAGGCAGACCCAAACACAAGGGTTGTCAAAAAATAATTATAGTGTGCCAACATAGTTTTCAAATATTGGCAGAATGGGTCCTTATTAATATATGGAAAATGATATAAAGTATGAACTATAATCTGCATTTTTATGGATCAAAATAACAAGAGAGTATATACTGGTTGCTTATAAATGGCTTAAAAAAACTTACTAGGTATCGAGGTCTGTGTTGAATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAA</genome_strand>
        <mrna_strand>GGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGNTAATTTTTATACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229290" ref_strand="+" ref_description="SGN-E229290 [cLEL-29-N19](-)">
      <seq>ggcacgagattatatataataacatcagattgtgtttgatttttcaggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttataaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="79368" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79661" g_stop="79752" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="141" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80486" g_stop="80734" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="390" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="408"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E229290" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79661" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAC-TTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAC</genome_strand>
        <mrna_strand>GGCACGAGATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228618" ref_strand="+" ref_description="SGN-E228618 [cLEL-29-N19](-)">
      <seq>gagattatatataataacatcagattgtgtttgatttttcaggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="79368" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79665" g_stop="79752" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="136" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80486" g_stop="80734" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="385" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="386" polyA_stop="403"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E228618" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79665" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAC</genome_strand>
        <mrna_strand>GAGATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357941" ref_strand="+" ref_description="SGN-E357941 [cTOS-24-L10]">
      <seq>tggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttttatanaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="79406" stop="81040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="48" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="96" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80486" g_stop="80734" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="345" r_length="249" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="358"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E357941" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAC</genome_strand>
        <mrna_strand>GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353723" ref_strand="+" ref_description="SGN-E353723 [cTOS-10-A12]">
      <seq>tggttttggattttataccgggccaagaaagatggtcctgtagtgttgggctggaggcatccctgggaaggccatggccatggtcatgaccattagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattcagttgaatatctttcgaaacagttgtgttttttgttcaataaagaatcctatgaagtggataattgtttttgcatgtcatttttgttttaattgagctgtttgtcccattgtttctgcagtgttgtgaacaacttctctgtttgtatttccaacttgacaatatagtaattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="79406" stop="81029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79707" g_stop="79752" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="48" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79842" g_stop="79889" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="96" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80486" g_stop="80729" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="340" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E353723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79707" e_stop="79752"/>
          <exon e_start="79842" e_stop="79889"/>
          <exon e_start="80486" e_stop="80729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTGGTGAGTCTCAATATTGTTTCATCATCTCTTACCTTTTTCATTTACTATATACCATTTTGGTGATTGTTGATGTGATTTTTACTGCTTAGGGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAGGTAAGGTTTTCCCTACTATAGTAGCTTATAATGTTACTAGTGAATGTGGTTGGTCATTTGAACATTATGGTGGCTGGAAAAGTCTGTTGTTTCTCTTTGCTTTATGTAAATGAACCTTATTCATGTTCAAAACTTCAGGGAGTGACATGTATTGGTCAAGAGTCTTACCATAACCTATATCTTTGTCTAAGCAACAGTAGGAATATATTGCAAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTT</genome_strand>
        <mrna_strand>GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG.........................................................................................GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240186" ref_strand="+" ref_description="SGN-E240186 [cLED-25-O1]">
      <seq>aaaatggcatctatttaagcagagagatgtcttcttttagccaaaataactaagcataggagattcatgtcaaaacatttttttcttgagctgaatatgtggttcataggacgagtttgattgttggtagatcatcacttgcaccagcatattcccaccttttgcaatctcttcactactcggatatttgctgctagtactatgttgagattttgagatactcaaaaacctatgaaaatcttaatgtgctgtcagttataaatttattggttgaattattgtgacattgatatcttcaagtgtgctgttcctgacttccaaagtcttgaatcctctatttttgtttgactaacccattctggtgaattgtgctaattgattttgcagatatgctgtagaagctgtggctggattgtaaaccaatatgatcaatgctaatgtctttcttggaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="79801" stop="80855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80101" g_stop="80555" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E240186" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80101" e_stop="80555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACA--TTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTC</genome_strand>
        <mrna_strand>AAAATGGCATCTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCATAGGAGATTCATGTCAAAACATTTTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E333026" ref_strand="+" ref_description="SGN-E333026 [cTOD-19-E5]">
      <seq>aagcaacccaaaccaacatccaaatctatggcttctattcaatttctcaagaactagcaaagactaattctttattttttgcatatatagttacaataaattccccaaatttaacaacaatcttgttccaccaatggccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84462" stop="85563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84762" g_stop="85263" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E333026" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84762" e_stop="85263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCT</genome_strand>
        <mrna_strand>AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTC-AAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307446" ref_strand="+" ref_description="SGN-E307446 [cLEY-12-L11]">
      <seq>caacccaaaccaacatccaaatctatggcttctattcaatttctcaagaactagcaaagactaattctttattttttgcatatatagttacaataaattccccaaatttaacaacaatcttgttccaccaatggccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84465" stop="85657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84765" g_stop="85357" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E307446" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84765" e_stop="85357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTC</genome_strand>
        <mrna_strand>CAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295122" ref_strand="+" ref_description="SGN-E295122 [cLET-20-G6]">
      <seq>acccaaaccaacatccaaatcttttgcttctattcaatttctcaagaactagcaaagactaattctttattttttgcatatatagttacaataaattccccaaatttaacaacaatcttgttccaccaatggccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaacaaagtatatagttcctcaatcaattctcaacaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaaagacccggatttaatcgatattttggcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84467" stop="85735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84767" g_stop="85435" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E295122" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84767" e_stop="85435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGA</genome_strand>
        <mrna_strand>ACCCAAACCAACATCCAAATCTTTTGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAACAAAGTATATAGTTCCTCAATCAATTCTCAACAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAAAGACCCGGATTTAATCGATATTTTGGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326642" ref_strand="+" ref_description="SGN-E326642 [cTOC-17-G20]">
      <seq>caacatccaaatctatggcttctattcaatttctcaagaactagcaaagactaattctttattttttgcatatatagttacaataaattccccaaatttaacaacaatcttgttccaccaatggccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaangggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84475" stop="85757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84775" g_stop="85457" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E326642" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84775" e_stop="85457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTC</genome_strand>
        <mrna_strand>CAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAANGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E366539" ref_strand="+" ref_description="SGN-E366539 [cLPT-13-E11]">
      <seq>ttcaatttctcaagaactagcaaagactaattctttattttttgcatatatagttacaataaattccacaaatttaacaacaatcttgttccaccaatggccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcaacaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctgttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaaatcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84499" stop="85607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84799" g_stop="85307" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E366539" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84799" e_stop="85307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAA</genome_strand>
        <mrna_strand>TTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCACAAATTTAACAACAATCTTGTTCCACCAATGGCCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAACAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTGTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAAATCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725925" ref_strand="+" ref_description="SGN-E725925 [LA08DA09]">
      <seq>gttccaccaatggccaatgctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaacgggaaagttgagagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84586" stop="85724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84886" g_stop="85424" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E725925" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84886" e_stop="85424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATAT</genome_strand>
        <mrna_strand>GTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAACGGGAAAGTTGAGAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334364" ref_strand="+" ref_description="SGN-E334364 [cTOD-21-L21]">
      <seq>ccaattctgtactctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttctgaaggtgaagggggtaatgggttgtttagtgttattgggaacttgttgttccctattattgcttttgctgggttgtttttccttttcaggcggtctcagggcggcccaggtgggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84599" stop="85876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84899" g_stop="85576" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E334364" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84899" e_stop="85576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTG</genome_strand>
        <mrna_strand>CCAATTCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365949" ref_strand="+" ref_description="SGN-E365949 [cLPT-11-P4]">
      <seq>tctcttccaatttcttgggttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcaacaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctgttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaaatcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84611" stop="85602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84911" g_stop="85302" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E365949" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84911" e_stop="85302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCT</genome_strand>
        <mrna_strand>TCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAACAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTGTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAAATCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331184" ref_strand="+" ref_description="SGN-E331184 [cTOD-6-A17]">
      <seq>gttcccaaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84629" stop="85737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84929" g_stop="85437" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E331184" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84929" e_stop="85437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAAT</genome_strand>
        <mrna_strand>GTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731916" ref_strand="+" ref_description="SGN-E731916 [LA28CC03]">
      <seq>aaatctttgtttctcctcccacacctaaaacctcaaggtatttccatcttcactccagaagaaagtatatagttcctcaatcaattctcagcaaaaaatccaattcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttctgaaggtgaagggggtaatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84635" stop="85780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84935" g_stop="85480" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E731916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84935" e_stop="85480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGT</genome_strand>
        <mrna_strand>AAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739390" ref_strand="+" ref_description="SGN-E739390 [LC17BA07]">
      <seq>ttcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttctgaaggtgaagggggtaatgggttgtttagtgttattgggaacttgttgttccctattattgcttttgctgggttgtttttccttttcaggcggtctcagggcggcccaggtgggcctggaggacttggcgggccgatggatttcggccggtctaagtccaagtttcaggaggtgcctgaaactggagtgacttttgctgatgttgctggtgctgatcaagctaaattggagttacaggaagtggttgatttcttgaaaaatcctgataagtatactgctttaggtgctaagataccaaaagggtgtcttttagttggtccaccaggtactggaaagacccttttagctagagcagtagctggtgaggctggtgtgccatttttctcttgtgcagcgtcagagtttgttgagttgtttgtgggtgtgggagcttctagagttagggatttgtttgagaaggcgaagtctaaagcaccttgtattgtgtttattgatgagaatgatgctgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84738" stop="86271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85038" g_stop="85971" g_length="934"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="934" r_length="934" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E739390" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85038" e_stop="85971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGA</genome_strand>
        <mrna_strand>TTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGAATGATGCTGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738360" ref_strand="+" ref_description="SGN-E738360 [LC13BE03]">
      <seq>ttcagataatttcaagaatgttccatctaaagctgctatagctgctttactcttctcttcaatcaccccacaagcttttgctcttgataatacaaccccagcagcaccaccacaagtgattgaagctgaagcaccaaaacctagtgcctcaaactcattaccctttgctcaaaatatcattttgaatgctccaaagactcaagcgcagcctgcttctgaccttcctgaaggtactcaatggaggtacagtgagttcttgaatgctgtgaagaaggggaaagttgaaagggttagatttagtaaagacggaagtacccttcagcttacagctgtagatgggcgtagagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttctgaaggtgaagggggtaatgggttgtttagtgttattgggaacttgttgttccctattattgcttttgctgggttgtttttccttttcaggcggtctcagggcggcccaggtgggcctggaggacttggcgggccgatggatttcggccggtctaagtccaagtttcaggaggtgcctgaaactggagtgacttttgctgatgttgctggtgctgatcaagctaaattggagttacaggaagtggttgatttcttgaaaaatcctgataagtatactgctttaggtgctaagataccaaaagggtgtcttttagttggtccaccaggtactggaaagacccttttagctagagcagtagctggtgaggctggtgtgccatttttctcttgtgcagcgtcagagtttgttgagttgtttgtgggtgtgggagcttctagagttagggatttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="84738" stop="86212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85038" g_stop="85912" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E738360" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85038" e_stop="85912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTG</genome_strand>
        <mrna_strand>TTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737003" ref_strand="+" ref_description="SGN-E737003 [LC08AE05]">
      <seq>agagctaatgtaattgtgcctaatgacccggatttaatcgatattttggcgatgaatggtgttgatatatcagtttctgaaggtgaagggggtaatgggttgtttagtgttattgggaacttgttgttccctattattgcttttgctgggttgtttttccttttcaggcggtctcagggcggcccaggtgggcctggaggacttggcgggccgatggatttcggccggtctaagtccaagtttcaggaggtgcctgaaactggagtgacttttgctgatgttgctggtgctgatcaagctaaattggagttacaggaagtggttgatttcttgaaaaatcctgataagtatactgctttaggtgctaagataccaaaagggtgtcttttagttggtccaccaggtactggaaagacccttttagctagagcagtagctggtgaggctggtgtgccatttttctcttgtgcagcgtcagagtttgttgagttgtttgtgggtgtgggagcttctagagttagggatttgtttgagaaggcgaagtctaaagcaccttgtattgtgtttattgatgagattgatgctgtgggaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtaaagtcaggattcttcaggtgcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85081" stop="86498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85381" g_stop="86196" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="816" r_length="816" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E737003" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85381" e_stop="86196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG</genome_strand>
        <mrna_strand>AGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAAAGTCAGGATTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359250" ref_strand="+" ref_description="SGN-E359250 [cLHT-11-P10]">
      <seq>gctggtgctgatcaagctaaattggagttgcaggaagtggttgatttcttgaaaaatcctgataagtatactgctttaggtgctaagataccaaaagggtgtcttttagttggtccaccaggtactggaaagacccttttagctagagcagtagctggtgaggctggtgtgccatttttctcttgtgcagcgtcagagtttgttgagttgtttgtgggtgtgggagcttctagagttagggatttgtttgagaaggcaaagtcgaaagcgccttgtattgtgtttattgatgagattgacgctgtgggaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctgtaaggttcgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85363" stop="86498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85663" g_stop="86196" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E359250" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85663" e_stop="86196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG</genome_strand>
        <mrna_strand>GCTGGTGCTGATCAAGCTAAATTGGAGTTGCAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCAAAGTCGAAAGCGCCTTGTATTGTGTTTATTGATGAGATTGACGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGTAAGGTTCGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710744" ref_strand="+" ref_description="SGN-E710744 [FA56CC09]">
      <seq>ggctggtgtgccatttttctcttgtgcagcgtcccattttgttgagttgtttgtgggtgtgggagcttctagagttagggatttgtttgagaaggcgaagtctaaagcaccttgtattgtgtttattgatgagattgatgctgtgggaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcacccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85524" stop="87059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85824" g_stop="86196" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86759" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="541" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E710744" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85824" e_stop="86196"/>
          <exon e_start="86592" e_stop="86759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCT</genome_strand>
        <mrna_strand>GGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCCCATTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCACCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726330" ref_strand="+" ref_description="SGN-E726330 [LA11CA11]">
      <seq>ggagcttctagagttagggatttgtttgagaaggcgaagtctaaagcaccttgtattgtgtttattgatgagattgatgctgtgggaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85585" stop="87841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85885" g_stop="86196" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="559" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="743" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87541" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="802" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E726330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85885" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATT</genome_strand>
        <mrna_strand>GGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280624" ref_strand="+" ref_description="SGN-E280624 [cLER-1-P9]">
      <seq>gagaaggcgaagtctaaagcaccttgtattgtgtttattgatgagattgatgctgtgggaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgccaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85612" stop="87079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85912" g_stop="86196" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86779" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="473" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E280624" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85912" e_stop="86196"/>
          <exon e_start="86592" e_stop="86779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGG</genome_strand>
        <mrna_strand>GAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGCCAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327669" ref_strand="+" ref_description="SGN-E327669 [cTOC-20-N8]">
      <seq>gaaggcaaagaggtgcaggtcttggaggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85670" stop="87403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85970" g_stop="86196" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="474" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87103" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="649" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E327669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85970" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACT</genome_strand>
        <mrna_strand>GAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737545" ref_strand="+" ref_description="SGN-E737545 [LC10BB05]">
      <seq>gagggtggaaatgatgagagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85694" stop="87954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85993" g_stop="86196" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="451" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="635" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="807" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E737545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85993" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG</genome_strand>
        <mrna_strand>GAGGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323657" ref_strand="+" ref_description="SGN-E323657 [cTOC-2-I11]">
      <seq>aaagtcaaaattttgtttataggcggaagacgtttaagggagcagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85688" stop="87104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86011" g_stop="86196" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="222" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86804" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="435" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E323657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86011" e_stop="86196"/>
          <exon e_start="86592" e_stop="86804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTC</genome_strand>
        <mrna_strand>AGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E729288" ref_strand="+" ref_description="SGN-E729288 [LA20CD05]">
      <seq>cagactattaatcagcttttgactgaaatggatgggttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttattttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgattggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85717" stop="87915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86017" g_stop="86196" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="427" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="611" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87615" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="745" r_length="134" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E729288" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86017" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTA-TTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCC</genome_strand>
        <mrna_strand>CAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGATTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699034" ref_strand="+" ref_description="SGN-E699034 [FA08BF10]">
      <seq>gcttttgactgaaatggatgggttctctggaaattccggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttccggtgcattctagaggaaaggcccttgccaaggatgtggactttgataacattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85731" stop="87082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86031" g_stop="86196" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86782" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="357" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E699034" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86031" e_stop="86196"/>
          <exon e_start="86592" e_stop="86782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCC</genome_strand>
        <mrna_strand>GCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCCGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAACATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701793" ref_strand="+" ref_description="SGN-E701793 [FA16DH03]">
      <seq>ttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattangattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85753" stop="88139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86053" g_stop="86196" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="391" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="575" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="747" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87731" g_stop="87839" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="856" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E701793" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86053" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTC</genome_strand>
        <mrna_strand>TTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTANGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E297763" ref_strand="+" ref_description="SGN-E297763 [cLET-38-C12]">
      <seq>ttctctggaaattcgggtgtcattgttttggctgcaactaacaggcctgatgttcttgattctgccttgttgagacctggaaggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaaaaaagacttgagtcaggcctgtacagcaggagctatctagagaatcaaatggcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85753" stop="87399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86053" g_stop="86196" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="391" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87099" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="562" r_length="171" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E297763" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86053" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTG</genome_strand>
        <mrna_strand>TTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAAAAAGACTTGAGTCAGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705837" ref_strand="+" ref_description="SGN-E705837 [FA28BB06]">
      <seq>gtcattgntttggntgcaactaacagggctgatgttcttgattctgccttgttgagacctggacctttaaatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataagccaagttgccattggaggaggtggtggaaacccgttcctaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85771" stop="87948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86071" g_stop="86196" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="373" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="557" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87648" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="723" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E705837" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86071" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGC</genome_strand>
        <mrna_strand>GTCATTGNTTTGGNTGCAACTAACAGGGCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGACCTTTAAATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAAGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728704" ref_strand="+" ref_description="SGN-E728704 [LA18CG07]">
      <seq>gatggtttgatcgacaagtgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85832" stop="88138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86132" g_stop="86196" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="312" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="496" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="668" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87731" g_stop="87838" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="776" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E728704" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86132" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACT</genome_strand>
        <mrna_strand>GATGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284909" ref_strand="+" ref_description="SGN-E284909 [cLER-19-P9]">
      <seq>tgactgtggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgctgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcaggcctgtacagcaggagctatctagagaatcaaatggcagttgctcttggtggaagagttgctggagaggttatttttggacaagacaacgtaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85850" stop="87825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86150" g_stop="86196" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="294" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="478" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.633" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87525" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="521" r_length="43" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E284909" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86150" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACT</genome_strand>
        <mrna_strand>TGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGCTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCAGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCTCTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGGAGAGGTTATTTTTGGACAAGACAACGTAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697649" ref_strand="+" ref_description="SGN-E697649 [FA03CG11]">
      <seq>ccgggataggcctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattacgattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccacaaagactactccatggcaaccagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85853" stop="88156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86153" g_stop="86196" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="290" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="474" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="646" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87731" g_stop="87856" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="773" r_length="127" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E697649" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86153" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAA-CAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACAC</genome_strand>
        <mrna_strand>CCG-GGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTACGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCACAAAGACTACTCCATGGCAACCAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E326622" ref_strand="+" ref_description="SGN-E326622 [cTOC-17-M17]">
      <seq>cctgatgttgctggtagagtcaggattcttcaggtgcattctagaggaaaggcccttgccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattgggagganggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="85864" stop="88091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86164" g_stop="86196" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86592" g_stop="86838" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="280" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="464" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="638" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87731" g_stop="87791" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="699" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E326622" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86164" e_stop="86196"/>
          <exon e_start="86592" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGTTGCTGGTAGAGTCAGGATTCTTCAGGTTAGTTTACTCTGAACATCGTTTTCTTCATTTTATCAACACGCATCCTTTATCGATTGAATATTTATTTTGAAACCACGTCTATATGCACCATGCTGGGTCTAGACTTTAAACAGTTTGTTTGCACAACTTTTTCTTGCTGTTGTCTGGTGTTGGTTTCCTCATTCGTCATACTTTGGAAGGAAATCAAAAGTTGTGATAAAGAGAGATTGGAATTAGCAAAATTGTATCTCCATTCTTTATGGACATACATCATGTGGTAGACAATAATGTGATACGTGTTTACCTTGAGATTGTGAGTGGTTCGCATGATTTTGCTGAACAAGCTTGAGGTGTTATGCTTGAAAAATGTCTTCCATTTGCTGAACTGCTTGTCTTACTACTCTGAATGACAGGTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATT-GGAGGA-GGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGG</genome_strand>
        <mrna_strand>CCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGGAGGANGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292334" ref_strand="+" ref_description="SGN-E292334 [cLET-1-C4]">
      <seq>ccaaggatgtggactttgataagattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcaggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86317" stop="87902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86617" g_stop="86838" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="406" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87483" g_stop="87602" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="526" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E292334" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86617" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGAT</genome_strand>
        <mrna_strand>CCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCAGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732815" ref_strand="+" ref_description="SGN-E732815 [LB03AH07]">
      <seq>cgaatattgccaggagaacaccaggtttcaccggtgcagatttgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattnacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86337" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86635" g_stop="86838" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="388" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="560" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87731" g_stop="88053" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="883" r_length="323" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E732815" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86635" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="88053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCA</genome_strand>
        <mrna_strand>CGAATATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTNACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGAACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291207" ref_strand="+" ref_description="SGN-E291207 [cLET-2-M15]">
      <seq>tgcaaaacttgatgaatgaagcagccatccttgcagctaggcgtgacctaaaggaaataagtaaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcaggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86377" stop="87902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86677" g_stop="86838" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="346" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87483" g_stop="87602" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="466" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E291207" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86677" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGAT</genome_strand>
        <mrna_strand>TGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCAGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284704" ref_strand="+" ref_description="SGN-E284704 [cLES-3-L7]">
      <seq>taaagatgagatatccgatgctctagagaggataattgctggcccggagaagaaaaatgctgttgtctcagatgagaagaagaagctggtagcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcaggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaaccctttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86438" stop="88083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86738" g_stop="86838" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="285" r_length="184" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="457" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87731" g_stop="87783" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="510" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E284704" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86738" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGA</genome_strand>
        <mrna_strand>TAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCAGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCTTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710436" ref_strand="+" ref_description="SGN-E710436 [FA55BG01]">
      <seq>caaatatgctgttgtctcctatgagaagaaaaagctggtatcttatcatgaggctggccatgccttggttggtgcacttatgcccgagtatgatcctgttgccaagatatctataattcctcgaggccaatccggtggtctcaccttctttgcccccagcgaagaaatacttgagtctgtcctgtacagcaagagctatctatagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaacacaacgtaacaactggagcatctaacgatttcatgcgagtctcacgagaggcaaggcagatggttgatagattaggattcagcaaaaagatatgccaagttgccattggaggaggtggtggaaacccgttcctacgccaacatatgtcaacccataaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgatgataaagaaagaaactgttgatggtgaagagttcatgatccttttcattgatggcaaggctgacctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacgaatgtacacattgagaaatttatttttcatattttngaccatcacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86623" stop="88346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86789" g_stop="86838" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90">
            <donor d_prob="0.931" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86929" g_stop="87112" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="234" r_length="184" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.633" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="406" r_length="172" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87731" g_stop="88050" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="726" r_length="320" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E710436" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86789" e_stop="86838"/>
          <exon e_start="86929" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="88050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATGGTATGGCAAAACTGAACAACATGCTTAGTAATTTCCTCCTGATGATTTAGTTGGAGTACATTTTTAACTGTGTTAACGTTTGGATTACAGAGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGT</genome_strand>
        <mrna_strand>CAAATATGCTGTTGTCTCCTATGAGAAGAAAAAGCTGGTATCTTATCATG..........................................................................................AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAATCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAATACTTGAGTCTGTCCTGTACAGCAAGAGCTATCTATAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAACACAACGTAACAACTGGAGCATCTAACGATTTCATGCGAGTCTCACGAGAGGCAAGGCAGATGGTTGATAGATTAGGATTCAGCAAAAAGATATGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTACGCCAACAT............................................................................ATGTCAACCCATAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGATGATAAAGAAAGAAACTGTTGATGGTGAAGAGTTCATGATCCTTTTCATTGATGGCAAGGCTGACCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACGAATGTACACATTGAGAAATTTATTTTTCATATTTTNGACCATCACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737209" ref_strand="+" ref_description="SGN-E737209 [LC08DE02]">
      <seq>aggccaagccggtggtctcaccttctttgcccccagcgaagaaagacttgagtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86702" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87002" g_stop="87112" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="283" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87731" g_stop="88062" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="615" r_length="332" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E737209" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87002" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="88062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACTGACA</genome_strand>
        <mrna_strand>AGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E733240" ref_strand="+" ref_description="SGN-E733240 [LB04BD08]">
      <seq>ccgtgtcgggcctgtacagcaggagctatctagagaatcaaatggcagttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgacnaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="86751" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87049" g_stop="87112" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.633" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="236" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87731" g_stop="88061" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="567" r_length="331" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E733240" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87049" e_stop="87112"/>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="88061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAGGTCAGTTTTACCTATTCTACCTGGATAGATGCTTATTTCTCCAGTCTATCTTGAACTTATAATATGGAAAGATGAAATGTCAAAAATAATATAAAGGGGGAGGGGGTGATGCATTTTTTAAGGATGATCACGAGTGTCGTGCTATTTTCATCTTTTGCTACACATAATTGTTACTGCTACAATAACTACATCTTAATCTCAAAATGTTGAGGTTAGATATATGAATGTTCACACCATATTGCTCCATTTAAGCTCATCTCTTATGGGGTGTAGGATTGCTAATATCTCTGGCATTATTTATCCATGATCTTGCTTGCCTCTCAACCTTCTAACAAGTCCAATTCTGTTTCTTGAATCCCTGCTCCCCCAGAGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACTGAC</genome_strand>
        <mrna_strand>CCGTGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG..................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACNAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390176" ref_strand="+" ref_description="SGN-E390176 [TUS-41-K5]">
      <seq>gttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaaccctttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagtgagttggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtgggggggggggtctattgtattaacaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87181" stop="88296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="189" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87731" g_stop="87996" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="455" r_length="266" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E390176" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATA</genome_strand>
        <mrna_strand>AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCTTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGTGAGTTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTGGGGGGGGGGGTCTATTGTATTAACAAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277660" ref_strand="+" ref_description="SGN-E277660 [cLER-6-M18]">
      <seq>ttgcacttggtggaagagttgctgaggaggttatttttggacaagacaacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaaccctttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggagttggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgctgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87181" stop="88252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87483" g_stop="87654" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="188" r_length="172" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87731" g_stop="87952" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="410" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E277660" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87483" e_stop="87654"/>
          <exon e_start="87731" e_stop="87952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGA</genome_strand>
        <mrna_strand>AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCTTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAGTTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGCTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225459" ref_strand="+" ref_description="SGN-E225459 [cLEL-17-L19](-)">
      <seq>caacgtaacaactggagcatctaacgatttcatgcaagtctcacgagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattgtaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcccaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaaaaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87213" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87513" g_stop="87654" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87731" g_stop="88058" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="470" r_length="328" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E225459" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87513" e_stop="87654"/>
          <exon e_start="87731" e_stop="88058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACT</genome_strand>
        <mrna_strand>CAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGTAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCCCAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAAAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E715331" ref_strand="+" ref_description="SGN-E715331 [FB13DH10]">
      <seq>cactagtggcaaggcagatggttgagagattaggattcagcaaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgacaaatcagagtgcnaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87254" stop="88356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87554" g_stop="87654" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87731" g_stop="88056" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="427" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="453"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E715331" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87554" e_stop="87654"/>
          <exon e_start="87731" e_stop="88056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAA</genome_strand>
        <mrna_strand>CACTAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCNAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E225292" ref_strand="+" ref_description="SGN-E225292 [cLEL-17-L19](-)">
      <seq>aaaaagataggccaagttgccattggaggaggtggtggaaacccgttcctaggccaacagatgtcaacccagaaagactactccatggcaacagccgatgtggtcgatgctgaagtaagggaattggttgaaaaggcgtacgaaagagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttcacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87295" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87595" g_stop="87654" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87731" g_stop="88058" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="388" r_length="328" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E225292" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87595" e_stop="87654"/>
          <exon e_start="87731" e_stop="88058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAGGTACATGATTCTTGCAAGTTGTCTTTTCCATTTCCTTGTGTTAACCATGCCTTATAAATTCGTGCTTTAATTTCAGATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACT</genome_strand>
        <mrna_strand>AAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG............................................................................ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTCACAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223956" ref_strand="+" ref_description="SGN-E223956 [cLEL-19-L8](-)">
      <seq>ctccatggcaacagccgatgtggtcgatgctaaaggtaagggaattggttgaaaaggcgtacgaaaaagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaagaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgccaaaaaaaaaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87451" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87751" g_stop="88061" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E223956" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87751" e_stop="88061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATGGCAACAGCCGATGTGGTCGATGCTGAA-GTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACTGAC</genome_strand>
        <mrna_strand>CTCCATGGCAACAGCCGATGTGGTCGATGCTAAAGGTAAGGGAATTGGTTGAAAAGGCGTACGAAAAAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGCCAAAAAAAAAANAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223823" ref_strand="+" ref_description="SGN-E223823 [cLEL-19-L8](-)">
      <seq>ccatggcaacagccaatgtggtcgatgctgaagtaaagggaattggttgaaaaggcgtacgaaaaagctacacaaatcatcacaactcacatcgacatcctacacaagcttgctcagctgttgatagagaaaaaaactgttgatggtgaagagttcatgagccttttcattgatggcaaggctgagctatacatttcttgatttcaccaatgtatcttcaccactctattgtattaacaaatatacatacaaatgtacacattgagaaatttatttttcatattttgccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="87453" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87753" g_stop="88061" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E223823" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87753" e_stop="88061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCAACAGCCGATGTGGTCGATGCTGAAGT-AAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACTGAC</genome_strand>
        <mrna_strand>CCATGGCAACAGCCAATGTGGTCGATGCTGAAGTAAAGGGAATTGGTTGAAAAGGCGTACGAAAAAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAAAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGCCAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711997" ref_strand="+" ref_description="SGN-E711997 [FB03CD08]">
      <seq>ccggtatctcacagctattcatcagattttggtaatgacacattataaagacgatgaactgacaaatgagttgtctttccaagagtggactcaacaaatgagggatatgttagaggcaagaaagcgtggtgacttggcatttcgggacaaggactttaaaactgccatagattgctattctcagtttgtagatgtgggaacgatggtgtctccaactgtttatgcacgaagaagcctttgttatctcatgtgtgatcaaccagatgctgcccttagagatgcaatgcaagcacaatgtgttcacccagactggtcaactgcattttacatgcaggcagttgccctgtcgaagctagacatgcacaaagatgcagctgacatgttgaatgaggctgcaattctagaagagaaaagacgcggagggcgtgcatcttgataatactctctcttgtatcattcttttggccctatcagttattcttgtcatcacaaaattagcccaaatttctgtatcatttgttttgagtgtgattgtcttagaactatgtataacaaaggaagagaatcatttgctctattggtatatgcgtatgtcagttttgcactctgatttgtcaaaatatgaaaaataaatttctcaatgtgtacatttgtatgtatatttgttaatacaatagagtggtgaagatacattggtgaaatcaagaaatgtatagctcagccttgccatcaatgaaaaggctcatgaactcttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="90022" stop="87597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89725" g_stop="89656" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89655" i_stop="89571" i_length="85">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89570" g_stop="89457" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="184" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89456" i_stop="88470" i_length="987">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88469" g_stop="87897" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="757" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E711997" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89725" e_stop="89656"/>
          <exon e_start="89570" e_stop="89457"/>
          <exon e_start="88469" e_stop="87897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAGGTAATTATTTTGACCTAAACTGCCACTGCAGAAGCATCTGTTTCTTTCACATCTTTATGTTGTTGTTGGATGCCCAATGATGCAGTTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAGGTATTTGCCTTCATCTAATGAGAATGTGTCAATCTGTATTACTGGTTACAACTTGCAACTTCCTTAACCCAGTAAGGTCAGTATTGGCATTTGGCAATAAAAGACTGACCCAGACAAGACATGAGGTAGACCGTAATATACTTAACTCCTGAATACCATTTATGTAGTTGGATGCCATAAATAGTTACTTCCTTGATTAATTGAGACATGCATCTTCATTGGTGATAGGAATGGCAGATCTTCTGCTTCTTCTTGTGTGGGTCGATTGACATTCCCAAGTCTCTATCATGTATCCAATTTAGAATTTTAAAATTAGCGGCTTTTCCAGAAAAAAAAATCAGTTTCCTTGGAGCCATCTATGCTCGACCACTTAATAGAAAGACCAAAATCTGAATGTGGCCTGTGTTTATGGTGTCTTTTCCACATCTAATTCTATACTGTATGTGATCTAGTTGACATTTTTGGTTATTTGTGTCACCGCTGAATCTTCCTTGGCCAAAAATCCAAGGAATAAAGTCAATGCACTCTTGGAATCTAATTCCATACTGTAAGCTGATCTTGTTCGCGGGGATGTAACACAATTATTTGCGTGCCTGGTAAATCTGCCATGTTAAATAGAACAACCAATCTATAGACTCCATCCAATCAGAGGTGGACCCAGGATTTGATTACAAACCATATTTCTAGCTTTATCCCTGCATCCAATGCCAATATTGTAGCATGACCTTTTCTGAGAATGAGATAGCGAAGATGTGGCCAGAAACTTGCTGCTTCATTGGATGCTTTACTGCATTACCTTTTCTAGCTGCTGGAGTAGTCGTATAGATTTCCTGCATTCCCTTAATACACGGTTATTAGGTAGCATGATGATCTAGCTTGCATTTGGGTTAACAGATTTCTTTCATTAGCTTACTTGTGCGCGTAAGATGGATGAGCTAAATACAACTTTGCTTTAGGCAATCTGCTTATTTCTGTGTCTCTTTGCAGTTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATTTGTATGTATATTTGTTAATACAATAGAGTGGTGAAGATACATTGGTGAAATCAAGAAATGTATAGCTCAGCCTTGCCATCAATGAAAAGGCTCATGAACTCTTCAC</genome_strand>
        <mrna_strand>CCGGTATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAG.....................................................................................TTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATTTGTATGTATATTTGTTAATACAATAGAGTGGTGAAGATACATTGGTGAAATCAAGAAATGTATAGCTCAGCCTTGCCATCAATGAAAAGGCTCATGAACTCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E732232" ref_strand="+" ref_description="SGN-E732232 [LB01CE05]">
      <seq>ctctacagaagaggcaactgttgtatttgatctggcttcacgatgcttacagtatgaacccagggagcgaccaaataccaaagacctcgtttcaacacttggtccattgcaaagcaaacctgatgttgcatctcatgtaatgttgggtattcccaagagtgaggaagctccaccaactccacagcaccctctttctgcaatgggtgatgcttgttcgagaatggatctcacagctattcatcagattttggtaatgacacattataaagacgatgaactgacaaatgagttgtctttccaagagtggactcaacaaatgagggatatgttagaggcaagaaagcgtggtgacttggcatttcgggacaaggactttaaaactgccatagattgctattctcagtttgtagatgtgggaacgatggtgtctccaactgtttatgcacgaagaagcctttgttatctcatgtgtgatcaaccagatgctgcccttagagatgcaatgcaagcacaatgtgttcacccagactggtcaactgcattttacatgcaggcagttgccctgtcgaagctagacatgcacaaagatgcagctgacatgttgaatgaggctgcaattctagaagagaaaagacgcggagggcgtgcatcttgataatactctctcttgtatcattcttttggccctatcagttattcttgtcatcacaaaattagcccaaatttctgtatcatttgttttgagtgtgattgtcttagaactatgtataacaaaggaagagaatcatttgctctattggtatatgcgtatgtcagttttgcactctgaattgtcaaaatatgaaaaataaatttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="90566" stop="87713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90266" g_stop="90143" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90142" i_stop="89821" i_length="322">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89820" g_stop="89656" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="289" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89655" i_stop="89571" i_length="85">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89570" g_stop="89457" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="403" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89456" i_stop="88470" i_length="987">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88469" g_stop="88003" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="870" r_length="467" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E732232" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90266" e_stop="90143"/>
          <exon e_start="89820" e_stop="89656"/>
          <exon e_start="89570" e_stop="89457"/>
          <exon e_start="88469" e_stop="88003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGATGTTAGTCCTACCACCATAATCTGCTCTATTTTTCTTGATGTCTTGTTTTCTATCCTTTCCCCTTCCAAAGAATATGGGAAAATAAAAACCTCATATTGTAAAAAATTTGTTTGGTAAGCTTAACTACCAAATATTGCCTCCTCATTTCTCCTTCATCTTAAGATGCTCCCTTATCTTCAATTCTCGTTGTATACTGTGTCCATGTCTTGTTTGTTCCCGAGCAACTGCTTCTGCTGGGAAGTTTGAGTCTATTTTTATCTAATTGATTGATTTGTTTTATCCAATTAGAGGTTAGAAGGAGTTTCTGATAGTTTGATTGCAGGTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAGGTAATTATTTTGACCTAAACTGCCACTGCAGAAGCATCTGTTTCTTTCACATCTTTATGTTGTTGTTGGATGCCCAATGATGCAGTTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAGGTATTTGCCTTCATCTAATGAGAATGTGTCAATCTGTATTACTGGTTACAACTTGCAACTTCCTTAACCCAGTAAGGTCAGTATTGGCATTTGGCAATAAAAGACTGACCCAGACAAGACATGAGGTAGACCGTAATATACTTAACTCCTGAATACCATTTATGTAGTTGGATGCCATAAATAGTTACTTCCTTGATTAATTGAGACATGCATCTTCATTGGTGATAGGAATGGCAGATCTTCTGCTTCTTCTTGTGTGGGTCGATTGACATTCCCAAGTCTCTATCATGTATCCAATTTAGAATTTTAAAATTAGCGGCTTTTCCAGAAAAAAAAATCAGTTTCCTTGGAGCCATCTATGCTCGACCACTTAATAGAAAGACCAAAATCTGAATGTGGCCTGTGTTTATGGTGTCTTTTCCACATCTAATTCTATACTGTATGTGATCTAGTTGACATTTTTGGTTATTTGTGTCACCGCTGAATCTTCCTTGGCCAAAAATCCAAGGAATAAAGTCAATGCACTCTTGGAATCTAATTCCATACTGTAAGCTGATCTTGTTCGCGGGGATGTAACACAATTATTTGCGTGCCTGGTAAATCTGCCATGTTAAATAGAACAACCAATCTATAGACTCCATCCAATCAGAGGTGGACCCAGGATTTGATTACAAACCATATTTCTAGCTTTATCCCTGCATCCAATGCCAATATTGTAGCATGACCTTTTCTGAGAATGAGATAGCGAAGATGTGGCCAGAAACTTGCTGCTTCATTGGATGCTTTACTGCATTACCTTTTCTAGCTGCTGGAGTAGTCGTATAGATTTCCTGCATTCCCTTAATACACGGTTATTAGGTAGCATGATGATCTAGCTTGCATTTGGGTTAACAGATTTCTTTCATTAGCTTACTTGTGCGCGTAAGATGGATGAGCTAAATACAACTTTGCTTTAGGCAATCTGCTTATTTCTGTGTCTCTTTGCAGTTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATT</genome_strand>
        <mrna_strand>CTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGAT..................................................................................................................................................................................................................................................................................................................................GTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAG.....................................................................................TTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGAATTGTCAAAATATGAAAAATAAATTTCTCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342266" ref_strand="+" ref_description="SGN-E342266 [cTOF-8-M23]">
      <seq>gactactgtagcagtgaaggtcgaccactataccatgacttgaatgcatatagagttctctttgatgagagtggcgatccccgtctttcttgttttgggctgatgaaaaatagcagggatggtaaaagttatagcacgaaccttgcgtatacacctcctgagtatttaagaaatggaagagtcactcaagaaagtgttgttttcagctatggaactgtccttttggacttgctaagtggaaaacatattcctcctggtcatgcactcgatatgatacggggaaaaaacattcttctattaatggattcacatttggagggaaatttctctacagaagaggcaactgttgtatttgatctggcttcacgatgcttacagtatgaacccagggagcgaccaaataccaaagacctcgtttcaacacttggtccattgcaaagcaaacctgatgttgcatctcatgtaatgttgggtattcccaagagtgaggaagctccaccaactccacagcaccctctttctgcaatgggtgatgcttgttcgagaatggatctcacagctattcatcagattttggtaatgacacattataaagacgatgaactgnacaaatgagttgtctttccaagagtggactcaacaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="92585" stop="89241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92285" g_stop="92217" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92216" i_stop="92095" i_length="122">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92094" g_stop="91989" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="175" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90921" g_stop="90836" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="261" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90331" g_stop="90143" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="450" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90142" i_stop="89821" i_length="322">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89820" g_stop="89656" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="616" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="89655" i_stop="89571" i_length="85">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89570" g_stop="89541" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="646" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E342266" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92285" e_stop="92217"/>
          <exon e_start="92094" e_stop="91989"/>
          <exon e_start="90921" e_stop="90836"/>
          <exon e_start="90331" e_stop="90143"/>
          <exon e_start="89820" e_stop="89656"/>
          <exon e_start="89570" e_stop="89541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAGGTACTTTGATGGACATCTTTTTTAGAGCTTGGAATGTCTTCATACATTTTAGAGTAATGTCTAATGTAGACTCCTGAATTTACTTTTATCACTGTATTAATTCTGTAAATGATTTTTGGCAGAGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATGGTAAAGTTTTGAAGTTTTTGTCTGTGTTGAGTTCTAAAGTTTTCCTCTTAGCACTATTACCATGGATAGTGATGCTATCTGGGACTGGAACATTTTGGATGGGTATGTCTCCTTGCACGAGACAGCCATTTTATGATGTGAGGTTGTGACTGCTGTCTGGTGCTGATTTAAAAAGAGACACTATTCCATGTGTGTTAAAGTAAGAGGATGTATGGAGTAACTTTGCTAATTGCTTTTTACTTATAAAATGTGTAAATCAAGAAAACGTCTTGAGCTCCCTGGATGAACAGAATGAAATGTCTACTTCAATGGTGTATAAAGTAATATCTCATCTCAAATATATATGTAGAAAAATCTTAAATTTGTTGATTGTTCGAAATATATATATGAGTCCAATACTTCTTAATTAGTGCCTGCCTTTTGAGTTATCTATCATTAGGTGTTCACAGTGAACTTTTTCCAGGGAGCAAAATTAGTATTCACATCCTGATATTTAAATGCAACAGTGTTACATGACCTCTTGATGCACGAATAAATAGTAGACCGGAATGCTGTTATACAAAGTTCTGTGATGTGAGGTAATGAAGGAAATTCCTACAGAAGTTGTGAATACGTTAGTAACTGAATTTGGTGCCTTCAGCATCTCCAATAACCTGATGTACATTATGTCATCATTTTCTCGTTTGAATTATATTTCTGACCAAGATATTCAGAATTTTGCTTGATAGTAATCGGCTTCTGTAAACTGATAGCTTGGTGGGGGGTAGGGGTGAGACTATATCTCTCTAGGAAAGTTCACAATTCAGAGCGATTTTGGAATTCCAATCCTACATCTCCTGATGCTGGTGGTGTTATACATTTGTGTTTTGGTAGTAAGTTATGTTCCTGCTTTTGGTTCTTTTCTTTTTCCGAGAAAGGGTTATGGAACTTAAATATGACAACTGAAAAAAGGAAGATTCCATTATGATCTGCCTAAGTGATTCTATTGATATCTATCATTTTCTGTTTATTATCATTCTCATTGTCAATTGATATTAAGGGATGAACAATTTATTGTCTATTTGCAGGAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCATGTAAGTTTCTTAGAGTCTGTTTGTTAGCAGTAAATTCATCTCTTTTTGCACCAAGTCTTGGGGATTGTCACCTTGTCAATGATGGGAACACTATTTTAGGCTCTCTTGTGTTGTAAACTTGTATTTATGTACTGGTACTCTGGAAATTATTGATTGAACCACTAATTGTAATGTCTGAGACTATGTACAAAATTTGTTGCCAGACCAGCAATAGGAGGGTTGTTGGACATTAGGCTTGGAACATTAGCAGTTTGAGACAGTTTTGATTATACATCCGCATACATTTTCTGTCTTTGATCATCTTTCTAAAAGAAGAGGAGAAATTCATTTGATGTTAATACTAGTGTAGAGTACATTTCTTCACTTTGTCTTGTAGAACATTTCATATTGGTGTCATTGTGTTTACCTCATTTCTCCTTTGCAATTCCTCCCCTTTCCTATGGTGAACTGTTTTAAAATTTAAATTTAAATCTTACGTGCTTAGTTCATTCCTTTACGTTTCAGGCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGATGTTAGTCCTACCACCATAATCTGCTCTATTTTTCTTGATGTCTTGTTTTCTATCCTTTCCCCTTCCAAAGAATATGGGAAAATAAAAACCTCATATTGTAAAAAATTTGTTTGGTAAGCTTAACTACCAAATATTGCCTCCTCATTTCTCCTTCATCTTAAGATGCTCCCTTATCTTCAATTCTCGTTGTATACTGTGTCCATGTCTTGTTTGTTCCCGAGCAACTGCTTCTGCTGGGAAGTTTGAGTCTATTTTTATCTAATTGATTGATTTGTTTTATCCAATTAGAGGTTAGAAGGAGTTTCTGATAGTTTGATTGCAGGTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTG-ACAAATGAGGTAATTATTTTGACCTAAACTGCCACTGCAGAAGCATCTGTTTCTTTCACATCTTTATGTTGTTGTTGGATGCCCAATGATGCAGTTGTCTTTCCAAGAGTGGACTCAACAAATG</genome_strand>
        <mrna_strand>GACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAG..........................................................................................................................AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGAT..................................................................................................................................................................................................................................................................................................................................GTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGNACAAATGAG.....................................................................................TTGTCTTTCCAAGAGTGGACTCAACAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341792" ref_strand="+" ref_description="SGN-E341792 [cTOF-9-E16]">
      <seq>ggtgttggaaacttgaggcacaaaaaggccggccaatttaattgggtactgctctgatggggatgagaggttgcttgtagctgagtaccatgccaaatgatacacttgcaaagcatctatttcactgggagaatcaaacccttgagtgggctatgcgtttaagagtggctctatatattgctgaagcattggactactgtagcagtgaaggtcgaccactataccatgacttgaatgcatatagagttctctttgatgagagtggcgatccccgtctttcttgttttgggctgatgaaaaatagcagggatggtaaaagttatagcacgaaccttgcgtatacacctcctgagtatttaagaaatggaagagtcactcaagaaagtgttgttttcagctatggaactgtccttttggacttgctaagtggaaaacatattcctcctggtcatgcactcgatatgatacggggaaaaaacattcttctattaatggattcacatttggagggaaatttctctacagaagaggcaactgttgtttttgatctggcttcacgatgcttacagtatgaacccagggaacgaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="93238" stop="89892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92956" g_stop="92833" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92832" i_stop="92351" i_length="482">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92350" g_stop="92217" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="260" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92216" i_stop="92095" i_length="122">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92094" g_stop="91989" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="366" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90921" g_stop="90836" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="452" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90331" g_stop="90192" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="592" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E341792" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92956" e_stop="92833"/>
          <exon e_start="92350" e_stop="92217"/>
          <exon e_start="92094" e_stop="91989"/>
          <exon e_start="90921" e_stop="90836"/>
          <exon e_start="90331" e_stop="90192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTTGGAAATTTGAGGCA-TAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTA-CATGCCAAATGATACACTTGCAAAGCATCTATTTCACTGTATGTTTATCATTTACTGCTTTTGTTTTTTTGTTTTTAGCTTCAATGCAGCTTATCTATGGAAATGAAGAGAAGAATCGAGATAATTTTATGGTTGATAGTTAGAGATAGGCGTAATATAGCATTAACTGCTTTGCTCCAATAGGTGTTGGGGAGATGTAAACGTTGTTTTTTGGTTTTGTCGGTAATTTGTATCGTAGCTAGTGTTTATCATCTTCTTTGTCATATTAGCGGGCAGAGTGATGGTTGGGGCATTAAAAACTTTAACTTTGTTATAAAAGACAATGTGTGTTTGTCGTTATCTTCTTCATACATAAATTTAGGGATACACCTGTTGTTAACATATTTTTTTTTCTTGCTTTGTCGCTTTATGAATTTTGCTTTCCTAGTTAATCTGATATAATATATTGACCTTTATATTGTATATTGCTTTCATCTCATGGGATCTGCGGAAATGCATTTTCTTTGTTCTTTCTCTCCAGGGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAGGTACTTTGATGGACATCTTTTTTAGAGCTTGGAATGTCTTCATACATTTTAGAGTAATGTCTAATGTAGACTCCTGAATTTACTTTTATCACTGTATTAATTCTGTAAATGATTTTTGGCAGAGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATGGTAAAGTTTTGAAGTTTTTGTCTGTGTTGAGTTCTAAAGTTTTCCTCTTAGCACTATTACCATGGATAGTGATGCTATCTGGGACTGGAACATTTTGGATGGGTATGTCTCCTTGCACGAGACAGCCATTTTATGATGTGAGGTTGTGACTGCTGTCTGGTGCTGATTTAAAAAGAGACACTATTCCATGTGTGTTAAAGTAAGAGGATGTATGGAGTAACTTTGCTAATTGCTTTTTACTTATAAAATGTGTAAATCAAGAAAACGTCTTGAGCTCCCTGGATGAACAGAATGAAATGTCTACTTCAATGGTGTATAAAGTAATATCTCATCTCAAATATATATGTAGAAAAATCTTAAATTTGTTGATTGTTCGAAATATATATATGAGTCCAATACTTCTTAATTAGTGCCTGCCTTTTGAGTTATCTATCATTAGGTGTTCACAGTGAACTTTTTCCAGGGAGCAAAATTAGTATTCACATCCTGATATTTAAATGCAACAGTGTTACATGACCTCTTGATGCACGAATAAATAGTAGACCGGAATGCTGTTATACAAAGTTCTGTGATGTGAGGTAATGAAGGAAATTCCTACAGAAGTTGTGAATACGTTAGTAACTGAATTTGGTGCCTTCAGCATCTCCAATAACCTGATGTACATTATGTCATCATTTTCTCGTTTGAATTATATTTCTGACCAAGATATTCAGAATTTTGCTTGATAGTAATCGGCTTCTGTAAACTGATAGCTTGGTGGGGGGTAGGGGTGAGACTATATCTCTCTAGGAAAGTTCACAATTCAGAGCGATTTTGGAATTCCAATCCTACATCTCCTGATGCTGGTGGTGTTATACATTTGTGTTTTGGTAGTAAGTTATGTTCCTGCTTTTGGTTCTTTTCTTTTTCCGAGAAAGGGTTATGGAACTTAAATATGACAACTGAAAAAAGGAAGATTCCATTATGATCTGCCTAAGTGATTCTATTGATATCTATCATTTTCTGTTTATTATCATTCTCATTGTCAATTGATATTAAGGGATGAACAATTTATTGTCTATTTGCAGGAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCATGTAAGTTTCTTAGAGTCTGTTTGTTAGCAGTAAATTCATCTCTTTTTGCACCAAGTCTTGGGGATTGTCACCTTGTCAATGATGGGAACACTATTTTAGGCTCTCTTGTGTTGTAAACTTGTATTTATGTACTGGTACTCTGGAAATTATTGATTGAACCACTAATTGTAATGTCTGAGACTATGTACAAAATTTGTTGCCAGACCAGCAATAGGAGGGTTGTTGGACATTAGGCTTGGAACATTAGCAGTTTGAGACAGTTTTGATTATACATCCGCATACATTTTCTGTCTTTGATCATCTTTCTAAAAGAAGAGGAGAAATTCATTTGATGTTAATACTAGTGTAGAGTACATTTCTTCACTTTGTCTTGTAGAACATTTCATATTGGTGTCATTGTGTTTACCTCATTTCTCCTTTGCAATTCCTCCCCTTTCCTATGGTGAACTGTTTTAAAATTTAAATTTAAATCTTACGTGCTTAGTTCATTCCTTTACGTTTCAGGCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAA</genome_strand>
        <mrna_strand>GGTGTTGGAAACTTGAGGCACAAAAAGGCCGGCCAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACCATGCCAAATGATACACTTGCAAAGCATCTATTTCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAG..........................................................................................................................AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTTTTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAACGACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330964" ref_strand="+" ref_description="SGN-E330964 [cTOD-10-L17]">
      <seq>gcataaaaggctggctaatttaattgggtacctgctctgatggggatgagaagttgcttgtagctgagtccatgccaaatgataccacttgcaaagcatctatttcactgggagaatcaaacccttgagtgggctatgcgtttaagagtggctctatatattgctgaagcattggactactgtagcactgaaggtcgaccactataccatgacttgaatgcatatagagttctctttgatgagagtggcgatccccgtctttcttgttttgggctgatgaaaaatagcacggatggtaaaagttatagcacgaaccttgcgtatacacctcctgagtatttaagaaatggaagagtcactcacgaaagtgttgttttcagctatggaactgtccttttggacttgctaagtggaaaacatattcctcctggtcatgcactcgatatgatacggggaaaaaacattcttctattaatggattcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="93239" stop="89979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92939" g_stop="92833" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92832" i_stop="92351" i_length="482">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92350" g_stop="92217" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="243" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92216" i_stop="92095" i_length="122">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92094" g_stop="91989" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="349" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90921" g_stop="90836" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="435" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90331" g_stop="90279" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="488" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E330964" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92939" e_stop="92833"/>
          <exon e_start="92350" e_stop="92217"/>
          <exon e_start="92094" e_stop="91989"/>
          <exon e_start="90921" e_stop="90836"/>
          <exon e_start="90331" e_stop="90279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAAAAGGCTGGCTAATTTAATTGGGTA-CTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATA-CACTTGCAAAGCATCTATTTCACTGTATGTTTATCATTTACTGCTTTTGTTTTTTTGTTTTTAGCTTCAATGCAGCTTATCTATGGAAATGAAGAGAAGAATCGAGATAATTTTATGGTTGATAGTTAGAGATAGGCGTAATATAGCATTAACTGCTTTGCTCCAATAGGTGTTGGGGAGATGTAAACGTTGTTTTTTGGTTTTGTCGGTAATTTGTATCGTAGCTAGTGTTTATCATCTTCTTTGTCATATTAGCGGGCAGAGTGATGGTTGGGGCATTAAAAACTTTAACTTTGTTATAAAAGACAATGTGTGTTTGTCGTTATCTTCTTCATACATAAATTTAGGGATACACCTGTTGTTAACATATTTTTTTTTCTTGCTTTGTCGCTTTATGAATTTTGCTTTCCTAGTTAATCTGATATAATATATTGACCTTTATATTGTATATTGCTTTCATCTCATGGGATCTGCGGAAATGCATTTTCTTTGTTCTTTCTCTCCAGGGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAGGTACTTTGATGGACATCTTTTTTAGAGCTTGGAATGTCTTCATACATTTTAGAGTAATGTCTAATGTAGACTCCTGAATTTACTTTTATCACTGTATTAATTCTGTAAATGATTTTTGGCAGAGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATGGTAAAGTTTTGAAGTTTTTGTCTGTGTTGAGTTCTAAAGTTTTCCTCTTAGCACTATTACCATGGATAGTGATGCTATCTGGGACTGGAACATTTTGGATGGGTATGTCTCCTTGCACGAGACAGCCATTTTATGATGTGAGGTTGTGACTGCTGTCTGGTGCTGATTTAAAAAGAGACACTATTCCATGTGTGTTAAAGTAAGAGGATGTATGGAGTAACTTTGCTAATTGCTTTTTACTTATAAAATGTGTAAATCAAGAAAACGTCTTGAGCTCCCTGGATGAACAGAATGAAATGTCTACTTCAATGGTGTATAAAGTAATATCTCATCTCAAATATATATGTAGAAAAATCTTAAATTTGTTGATTGTTCGAAATATATATATGAGTCCAATACTTCTTAATTAGTGCCTGCCTTTTGAGTTATCTATCATTAGGTGTTCACAGTGAACTTTTTCCAGGGAGCAAAATTAGTATTCACATCCTGATATTTAAATGCAACAGTGTTACATGACCTCTTGATGCACGAATAAATAGTAGACCGGAATGCTGTTATACAAAGTTCTGTGATGTGAGGTAATGAAGGAAATTCCTACAGAAGTTGTGAATACGTTAGTAACTGAATTTGGTGCCTTCAGCATCTCCAATAACCTGATGTACATTATGTCATCATTTTCTCGTTTGAATTATATTTCTGACCAAGATATTCAGAATTTTGCTTGATAGTAATCGGCTTCTGTAAACTGATAGCTTGGTGGGGGGTAGGGGTGAGACTATATCTCTCTAGGAAAGTTCACAATTCAGAGCGATTTTGGAATTCCAATCCTACATCTCCTGATGCTGGTGGTGTTATACATTTGTGTTTTGGTAGTAAGTTATGTTCCTGCTTTTGGTTCTTTTCTTTTTCCGAGAAAGGGTTATGGAACTTAAATATGACAACTGAAAAAAGGAAGATTCCATTATGATCTGCCTAAGTGATTCTATTGATATCTATCATTTTCTGTTTATTATCATTCTCATTGTCAATTGATATTAAGGGATGAACAATTTATTGTCTATTTGCAGGAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCATGTAAGTTTCTTAGAGTCTGTTTGTTAGCAGTAAATTCATCTCTTTTTGCACCAAGTCTTGGGGATTGTCACCTTGTCAATGATGGGAACACTATTTTAGGCTCTCTTGTGTTGTAAACTTGTATTTATGTACTGGTACTCTGGAAATTATTGATTGAACCACTAATTGTAATGTCTGAGACTATGTACAAAATTTGTTGCCAGACCAGCAATAGGAGGGTTGTTGGACATTAGGCTTGGAACATTAGCAGTTTGAGACAGTTTTGATTATACATCCGCATACATTTTCTGTCTTTGATCATCTTTCTAAAAGAAGAGGAGAAATTCATTTGATGTTAATACTAGTGTAGAGTACATTTCTTCACTTTGTCTTGTAGAACATTTCATATTGGTGTCATTGTGTTTACCTCATTTCTCCTTTGCAATTCCTCCCCTTTCCTATGGTGAACTGTTTTAAAATTTAAATTTAAATCTTACGTGCTTAGTTCATTCCTTTACGTTTCAGGCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTT</genome_strand>
        <mrna_strand>GCATAAAAGGCTGGCTAATTTAATTGGGTACCTGCTCTGATGGGGATGAGAAGTTGCTTGTAGCTGAGTCCATGCCAAATGATACCACTTGCAAAGCATCTATTTCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCACTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAG..........................................................................................................................AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCACGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTCACTCACGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731206" ref_strand="+" ref_description="SGN-E731206 [LA26BG12]">
      <seq>atgggttgttgtcaatcttcaatcttgaaggagttgagctcagagaaagatcagcgtcatggggtggtaaacgcacgagcttctaacggcaccggcgccggagctgctgtcggagatggtggggttccggtgttttctgagttttcgctttctgagctcaaagcagctacgaataacttcagttcagaatttattgtttctgaaagtggagaaaaggctccgaatatggtttacaaggggaggttgcagaatcggcggtggatcgctgttaagaagtttactaaatcggcatggcctgatcctaaacagtttgcggatgaagcatcaggtgttggaaatttgaggcataaaaggctggctaatttaattgggtactgctctgatggggatgagagtggcgatccccgtctttcttgttttgggctgatgaaaaatagcagggatggtaaaagttatagcacgaaccttgcgtatacacctcctgagtatttaagaaatggaagagtcactcaagaaagtgttgttttcagctatggaactgtccttttggacttgctaagtggaanacatattccctctggtcatgcactcgatatgatacgggaaaaaacattcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="93792" stop="89996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93492" g_stop="93178" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93177" i_stop="92969" i_length="209">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92968" g_stop="92891" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="393" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92890" i_stop="92095" i_length="796">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92094" g_stop="91989" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="499" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067">
            <donor d_prob="0.716" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90921" g_stop="90836" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="585" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504">
            <donor d_prob="0.965" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90331" g_stop="90296" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="620" r_length="35" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E731206" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93492" e_stop="93178"/>
          <exon e_start="92968" e_stop="92891"/>
          <exon e_start="92094" e_stop="91989"/>
          <exon e_start="90921" e_stop="90836"/>
          <exon e_start="90331" e_stop="90296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCGGTATTGCCCTCTTACTTTGATTTATTTACTGTATTGCCCTTGTTTTATTTTTTGTGAAGCTAGGGTTTAATGTGGATTTGAGATTGACCTAAATTGACCTGAATGGATATAGTGGATATAGCCATGTAACTGAGCTACTAAGGTTCCACGTTTAGGATTGAGGTGTTGTTGCTATTTGTTCTGATTTTTGTTGATGTTGTTGGAATTAGGATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATACACTTGCAAAGCATCTATTTCACTGTATGTTTATCATTTACTGCTTTTGTTTTTTTGTTTTTAGCTTCAATGCAGCTTATCTATGGAAATGAAGAGAAGAATCGAGATAATTTTATGGTTGATAGTTAGAGATAGGCGTAATATAGCATTAACTGCTTTGCTCCAATAGGTGTTGGGGAGATGTAAACGTTGTTTTTTGGTTTTGTCGGTAATTTGTATCGTAGCTAGTGTTTATCATCTTCTTTGTCATATTAGCGGGCAGAGTGATGGTTGGGGCATTAAAAACTTTAACTTTGTTATAAAAGACAATGTGTGTTTGTCGTTATCTTCTTCATACATAAATTTAGGGATACACCTGTTGTTAACATATTTTTTTTTCTTGCTTTGTCGCTTTATGAATTTTGCTTTCCTAGTTAATCTGATATAATATATTGACCTTTATATTGTATATTGCTTTCATCTCATGGGATCTGCGGAAATGCATTTTCTTTGTTCTTTCTCTCCAGGGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAGGTACTTTGATGGACATCTTTTTTAGAGCTTGGAATGTCTTCATACATTTTAGAGTAATGTCTAATGTAGACTCCTGAATTTACTTTTATCACTGTATTAATTCTGTAAATGATTTTTGGCAGAGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATGGTAAAGTTTTGAAGTTTTTGTCTGTGTTGAGTTCTAAAGTTTTCCTCTTAGCACTATTACCATGGATAGTGATGCTATCTGGGACTGGAACATTTTGGATGGGTATGTCTCCTTGCACGAGACAGCCATTTTATGATGTGAGGTTGTGACTGCTGTCTGGTGCTGATTTAAAAAGAGACACTATTCCATGTGTGTTAAAGTAAGAGGATGTATGGAGTAACTTTGCTAATTGCTTTTTACTTATAAAATGTGTAAATCAAGAAAACGTCTTGAGCTCCCTGGATGAACAGAATGAAATGTCTACTTCAATGGTGTATAAAGTAATATCTCATCTCAAATATATATGTAGAAAAATCTTAAATTTGTTGATTGTTCGAAATATATATATGAGTCCAATACTTCTTAATTAGTGCCTGCCTTTTGAGTTATCTATCATTAGGTGTTCACAGTGAACTTTTTCCAGGGAGCAAAATTAGTATTCACATCCTGATATTTAAATGCAACAGTGTTACATGACCTCTTGATGCACGAATAAATAGTAGACCGGAATGCTGTTATACAAAGTTCTGTGATGTGAGGTAATGAAGGAAATTCCTACAGAAGTTGTGAATACGTTAGTAACTGAATTTGGTGCCTTCAGCATCTCCAATAACCTGATGTACATTATGTCATCATTTTCTCGTTTGAATTATATTTCTGACCAAGATATTCAGAATTTTGCTTGATAGTAATCGGCTTCTGTAAACTGATAGCTTGGTGGGGGGTAGGGGTGAGACTATATCTCTCTAGGAAAGTTCACAATTCAGAGCGATTTTGGAATTCCAATCCTACATCTCCTGATGCTGGTGGTGTTATACATTTGTGTTTTGGTAGTAAGTTATGTTCCTGCTTTTGGTTCTTTTCTTTTTCCGAGAAAGGGTTATGGAACTTAAATATGACAACTGAAAAAAGGAAGATTCCATTATGATCTGCCTAAGTGATTCTATTGATATCTATCATTTTCTGTTTATTATCATTCTCATTGTCAATTGATATTAAGGGATGAACAATTTATTGTCTATTTGCAGGAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCATGTAAGTTTCTTAGAGTCTGTTTGTTAGCAGTAAATTCATCTCTTTTTGCACCAAGTCTTGGGGATTGTCACCTTGTCAATGATGGGAACACTATTTTAGGCTCTCTTGTGTTGTAAACTTGTATTTATGTACTGGTACTCTGGAAATTATTGATTGAACCACTAATTGTAATGTCTGAGACTATGTACAAAATTTGTTGCCAGACCAGCAATAGGAGGGTTGTTGGACATTAGGCTTGGAACATTAGCAGTTTGAGACAGTTTTGATTATACATCCGCATACATTTTCTGTCTTTGATCATCTTTCTAAAAGAAGAGGAGAAATTCATTTGATGTTAATACTAGTGTAGAGTACATTTCTTCACTTTGTCTTGTAGAACATTTCATATTGGTGTCATTGTGTTTACCTCATTTCTCCTTTGCAATTCCTCCCCTTTCCTATGGTGAACTGTTTTAAAATTTAAATTTAAATCTTACGTGCTTAGTTCATTCCTTTACGTTTCAGGCACTCGATATGATACGGGGAAAAAACATTCTTCTA</genome_strand>
        <mrna_strand>ATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCG.................................................................................................................................................................................................................GATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAANACATATTCCCTCTGGTCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCGATATGATAC-GGGAAAAAACATTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335331" ref_strand="+" ref_description="SGN-E335331 [cTOE-1-P22]">
      <seq>agctgtataactaatcccaaaaaaaaaataaaaaaaaaagactaaaaaagctatttttacgactaatttaatccataataaagttgtattcctttttttgttgttttttttggttgggtgaggtttaagattggttatgatgtttaattgaagggattcttgatttgggtcatcatgggttgttgtcaatcttcaatcttgaaggagttgagctcagagaaagatcagcgtcatggnggtggtaaacgcacgagcttctaacggcaccggcgccggagctgctgtcggagatggtggggttccggtgttttctgagttttcgctttctgagctcaaagcagctacgaataacttcagttcagaatttattgtttctgaaagtggagaaaaggctccgaatatggtttacaggggaggttgcagaatcggcggtggatcgctgttaagaagtttactaaatcggcatggcctgatcctaaacagtttgcggatgaagcatcaggtgttggaaatttgaggcataaaaggctggctaatttaattgggtactgctctgatggggatgagaggttgcttgtagctgagtacatgccaaatgatacacttgcaaagcatctatttcactgggagaatcaaacccttgagtgggctatgcgtttaagagtggctctatatattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="93966" stop="91993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93666" g_stop="93178" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93177" i_stop="92969" i_length="209">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92968" g_stop="92833" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="625" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92832" i_stop="92351" i_length="482">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92350" g_stop="92293" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="683" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E335331" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93666" e_stop="93178"/>
          <exon e_start="92968" e_stop="92833"/>
          <exon e_start="92350" e_stop="92293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGTATAA-TAATCCCAAAAAAAAAATAAAAAAAAAAGATTAAAAAAGCTATTTTTATGATTAATTTAATCATATAATAAAGTTGTATTCCTTTTTTTGTTGTTTTTTTTGGTTGGGTGAGGTTTAAGATTGGTTATGATGTTTAATTGAAGGGATTCTTGATTTGGGTCATCATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGG-GGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCGGTATTGCCCTCTTACTTTGATTTATTTACTGTATTGCCCTTGTTTTATTTTTTGTGAAGCTAGGGTTTAATGTGGATTTGAGATTGACCTAAATTGACCTGAATGGATATAGTGGATATAGCCATGTAACTGAGCTACTAAGGTTCCACGTTTAGGATTGAGGTGTTGTTGCTATTTGTTCTGATTTTTGTTGATGTTGTTGGAATTAGGATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATACACTTGCAAAGCATCTATTTCACTGTATGTTTATCATTTACTGCTTTTGTTTTTTTGTTTTTAGCTTCAATGCAGCTTATCTATGGAAATGAAGAGAAGAATCGAGATAATTTTATGGTTGATAGTTAGAGATAGGCGTAATATAGCATTAACTGCTTTGCTCCAATAGGTGTTGGGGAGATGTAAACGTTGTTTTTTGGTTTTGTCGGTAATTTGTATCGTAGCTAGTGTTTATCATCTTCTTTGTCATATTAGCGGGCAGAGTGATGGTTGGGGCATTAAAAACTTTAACTTTGTTATAAAAGACAATGTGTGTTTGTCGTTATCTTCTTCATACATAAATTTAGGGATACACCTGTTGTTAACATATTTTTTTTTCTTGCTTTGTCGCTTTATGAATTTTGCTTTCCTAGTTAATCTGATATAATATATTGACCTTTATATTGTATATTGCTTTCATCTCATGGGATCTGCGGAAATGCATTTTCTTTGTTCTTTCTCTCCAGGGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGA</genome_strand>
        <mrna_strand>AGCTGTATAACTAATCCCAAAAAAAAAATAAAAAAAAAAGACTAAAAAAGCTATTTTTACGACTAATTTAATC-CATAATAAAGTTGTATTCCTTTTTTTGTTGTTTTTTTTGGTTGGGTGAGGTTTAAGATTGGTTATGATGTTTAATTGAAGGGATTCTTGATTTGGGTCATCATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGNGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTAC-AGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCG.................................................................................................................................................................................................................GATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATACACTTGCAAAGCATCTATTTCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354766" ref_strand="+" ref_description="SGN-E354766 [cTOS-19-G21]">
      <seq>caaattggatttgtgatggactcaatcaactcaaaattgttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatcttccagacgttgatactcactttcaaggaagaacatttagcagctcaggtagctgtgaggcgtaaagatgaatctaagattgcttcgtatgctaaagcactgagaaaaatggctaaggaaatggataaacttgcgttgaatgtacaatgtatagggaaatatattatacctcaacaaactataccaatcccagatggagatgcagagttagcagaagtgatgaaagacataatagaagtaacacaattagtttcaattgcactttttaatggacttggagtatcaatggcatatgcaaaaccatcatgttcatggattggattaggaaagaagacaaaaaaattgaaagaaaatgaaggaattgtggaatttgtagaaatggaattggagaatttgttgagaaaaaataaaggagatgaagaggtgaaaattgtgactaaaaaaatgcatgaattggaagattgtatttgtgggattgaaaattgtggggagaaagtgtttaggagtttaattaatgctagagtttcattgcttaatgtattcncncnatagagaaagaaaattaaagatgatgcatacatggatattttgcttttatggattttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="99775" stop="98070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99475" g_stop="99267" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99266" i_stop="98930" i_length="337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98929" g_stop="98370" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="769" r_length="560" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E354766" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99475" e_stop="99267"/>
          <exon e_start="98929" e_stop="98370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTCAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAATTGTGACTAAAAAAATGCATGAATTGGAAGATTGTATTTGTGGGATTGAAAATTGTGGGGAGAAAGTGTTTAGGAGTTTAATTAATGCTAGAGTTTCATTGCTTAATGTATTCACACAATAGAGAAAGAAAATTAAAGATGATGCATACATGTATATTTTGCTTTATTGTATTTTTTT</genome_strand>
        <mrna_strand>CAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAG.................................................................................................................................................................................................................................................................................................................................................GTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAATTGTGACTAAAAAAATGCATGAATTGGAAGATTGTATTTGTGGGATTGAAAATTGTGGGGAGAAAGTGTTTAGGAGTTTAATTAATGCTAGAGTTTCATTGCTTAATGTATTCNCNCNATAGAGAAAGAAAATTAAAGATGATGCATACATGGATATTTTGCTTTTATGGATTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304252" ref_strand="+" ref_description="SGN-E304252 [cLEX-6-J22]">
      <seq>tcaatcaactcaaaattgttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatcttccagacgttgatactcactttcaaggaagaacatttagcagctcaggtagctgtgaggcgtaaagatgaatctaagattgcttcgtatgctaaagcactgagaaaaatggctaaggaaatggataaacttgcgttgaatgtacaatgtatagggaaatatattatacctcaacaaactataccaatcccagatggagatgcagagttagcagaagtgatgaaagacataatagaagtaacacaattagtttcaattgcactttttaatggacttggagtatcaatggcatatgcaaaaccatcatgttcatggattggattaggaaagaagacaaaaaaattgaaagaaaatgaaggaattgtggaatttgtagaaatggaattggagaatttgttgagaaaaaataaaggagatgaagaggtgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="99754" stop="98247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99454" g_stop="99267" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99266" i_stop="98930" i_length="337">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98929" g_stop="98547" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="571" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E304252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99454" e_stop="99267"/>
          <exon e_start="98929" e_stop="98547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTCAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAAT</genome_strand>
        <mrna_strand>TCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAG.................................................................................................................................................................................................................................................................................................................................................GTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308414" ref_strand="+" ref_description="SGN-E308414 [cLEY-25-D15]">
      <seq>tttgtgatggactcaatcaactcaaaatagttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatcttccagacgttgatactcactttcaaggaagaacatttagcagctcaagtagctgtgaggcgtaaagatgaatctaagattgcttcgtatgctaaagcactgagaaaaatggctaaagaaatggataaacttgcgttgaatgtacaatgtatagggaaatatattatacctcaacatactataccaatcccagatggagatgcagagttagcagaagtgatgaaagacataatagaagtaacacaattagtttcaattgcactttttaatggacttggagtatcaatggcatatgcaaaaccatcatgttcatggattggattaggaaagaagacaaaaaaattgaaagaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="99766" stop="98323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99466" g_stop="99267" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99266" i_stop="98930" i_length="337">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98929" g_stop="98623" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="507" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E308414" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99466" e_stop="99267"/>
          <exon e_start="98929" e_stop="98623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATAATTTTAGTTATTGATATTTAATTATATTATGTTTCAACAGGTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATG</genome_strand>
        <mrna_strand>TTTGTGATGGACTCAATCAACTCAAAATAGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAA.................................................................................................................................................................................................................................................................................................................................................GTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAAGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACATACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548150" ref_strand="+" ref_description="SGN-E548150 [TUS-58-I18]">
      <seq>aaaatgggaaaagaaaaaacactatcaaaatcgagaacaatggctcctcgaatggtcgctaattttcgcagatctctttctttcccaaatcacccaaatcactcaaataaacccaaaaaatccttccatgttcgatctgctagtctgccatgtcgatctcatccattaatttctcagctcaaagatgatttaaacgagctcaaatcatgggcttttaagccccaaaatcgaacttcaaattggatttgtgatggactcaatcaactcaaaattgttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatcttccagacgttgatactcactttcaaggaagaacatttagcagctcaggtacataattttatttacttaattatatggccgaaaatttaaatataataaaatagactttccgatcatatttttgaaaaattcaaatttcacaaattgactattttttaaatactattgtccgcgcctttgcataaaatggccttttttttatttcattttttaaattttgttcccaattagctaagtgggctaaaggatcagtaattcaccgctactagattggagaattccaccttattatccattaattgtataagttcattatttttcatacaaattctcgaggtatcaaatctttgataatgtgtgtgattataatgtttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="100010" stop="98670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99710" g_stop="98970" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="773" r_length="773" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E548150" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99710" e_stop="98970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTGGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTT-C---C--------G----------A--T--C------A-TATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATA</genome_strand>
        <mrna_strand>AAAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTCGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTAC-ATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTGAAAAATTCAAATTTCACAAATTGACTATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279728" ref_strand="+" ref_description="SGN-E279728 [cLER-5-F10]">
      <seq>aaatgggaaaagaaaaaacactatcaaaatcgagaacaatggctcctcgaatggtcgctaattttcgcagatctctttctttcccaaatcacccaaatcactcaaataaacccaaaaaatccttccatgttcgatctgctagtctgccatgtcgatctcatccattaatttctcagctcaaagatgatttaaacgagctcaaatcatgggcttttaagccccaaaatcgaacttcaaattggatttgtgatggactcaatcaactcaaaattgttcatgaatctctcgatgatctgcttcttcttccacaaacacgtgaatcattaaacggacattccgatttggtcgagaagcttctagatgatttccttcacttcgtcgacgtttatggaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="100009" stop="99014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99709" g_stop="99314" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E279728" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99709" e_stop="99314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTGGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCT</genome_strand>
        <mrna_strand>AAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTCGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274977" ref_strand="+" ref_description="SGN-E274977 [cLEN-16-K17]">
      <seq>gctacaagacttacttagtatccatgagatattcaacaacaaaaaaagacctgtatttgtctacagaaaatctaaggttttgtagacctgtagatggacgtagaaaaaactgcgtgggaggctagaaaactatacatagtttactaaactataatgggtttggtgataaacctaatcgacaaatttgagacactggaggagcctcccaataagcagtttttttcattaattctgcgaaatctttcacacactgctccatttttagattttcaactcgttgtcttgctgcagccagtttattacctgccacttggtcgaatattttctcccaaccactctcccactcagcatgggcatcacagagctgaagggtgttattggtccagtcagtccagctccatcctctgtacagtttattcatcgtgagcccaacacagtggtgagtgcacggaggtgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="105413" stop="106471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105713" g_stop="106171" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E274977" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105713" e_stop="106171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTACAAGAC-TACTTAGTATCCATGAGATATTCAACAACAAAAAAAGACCTGTATTTGTCTACAGAAAATCTAAGGTTTTGTAGACCTGTAGATGGACGTAGAAAAAACTGCGTGGGAGGCTAGAAAACTATACATAGTTTACTAAACTATAATGGGTTTGGTGATAAACCTAATCGACAAATTTGAGACACTGGAGGAGCCTCCCAATAAGCAGTTTTTTTCATTAATTCTGCGAAATCTTTCACACACTGCTCCATTTTTAGATTTTCAACTCGTTGTCTTGCTGCAGCCAGTTTATTACCTGCCACTTGGTCGAATATTTTCTCCCAACCACTCTCCCACTCAGCATGGGCATCACAGAGCTGAAGGGTGTTATTGGTCCAGTCAGTCCAGCTCCATCCTCTGTACAGTTTATTCATCGTGAGCCCAACACAGTGGTGAGTGCACGGAGGTGTGCA</genome_strand>
        <mrna_strand>GCTACAAGACTTACTTAGTATCCATGAGATATTCAACAACAAAAAAAGACCTGTATTTGTCTACAGAAAATCTAAGGTTTTGTAGACCTGTAGATGGACGTAGAAAAAACTGCGTGGGAGGCTAGAAAACTATACATAGTTTACTAAACTATAATGGGTTTGGTGATAAACCTAATCGACAAATTTGAGACACTGGAGGAGCCTCCCAATAAGCAGTTTTTTTCATTAATTCTGCGAAATCTTTCACACACTGCTCCATTTTTAGATTTTCAACTCGTTGTCTTGCTGCAGCCAGTTTATTACCTGCCACTTGGTCGAATATTTTCTCCCAACCACTCTCCCACTCAGCATGGGCATCACAGAGCTGAAGGGTGTTATTGGTCCAGTCAGTCCAGCTCCATCCTCTGTACAGTTTATTCATCGTGAGCCCAACACAGTGGTGAGTGCACGGAGGTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E712569" ref_strand="+" ref_description="SGN-E712569 [FB05AH04]">
      <seq>gagacttggcatgtgtcacccgttggtgatagatggtctaggacatggggagaggagcacttcggaaatggcaaagtgcacaagtacggcaagagcacgacaggtgaaagttgggacatcgttgtggatgaaggaacttactacgaggctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttcttctcaaacaaggttgatgttgatgctagttggcaaattttcagattttgattgtaattgtcaactctcgatgtgacaaaacatactttgcctattcatttagttcattcttttagagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="111712" stop="74027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111412" g_stop="111382" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111162" g_stop="111123" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="71" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111015" g_stop="110941" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="146" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110717" g_stop="110425" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="439" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110424" i_stop="109377" i_length="1048">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109376" g_stop="109351" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="465" r_length="26" r_score="0.808"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E712569" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111412" e_stop="111382"/>
          <exon e_start="111162" e_stop="111123"/>
          <exon e_start="111015" e_stop="110941"/>
          <exon e_start="110717" e_stop="110425"/>
          <exon e_start="109376" e_stop="109351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTTGGCATGTGTCACCCGTTGGTGATAGTATGTCTACCTTCTATTTAATTGAATTACATCTTTACATTCCAAAAGGACTTAGGTGCTAAAACACAAAAACCAATTACAAGTTTTTCCTGGTGAAAGCTAAGCTGTTAAAAGAAATTCCCTAACTATCATAATATGTATTACCGTGTCTCTTATTTTGAGTTTTAAGTTAACCAATCATCCAATTCTCTTCTTAGTTTCCTTTTCCTAATTATCCAGGATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGGGTATGTCACAATTATGAATATGAACTAAAATTCAGCTTGTTAGATGTCTATTTCCATGCACTTTTACACTTTAGAAACTTATAAATAATGTTGTTTCCATGAATCAGCAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGAGTAAGTCATAGTTTAGTGTTAGTAGGCTGTAGGATTTAACTTATAACATGGACATTATCACTACAGTTACAGCACGTTGCCTATCTTATTTTTCAAATAACTTGTTCCACTTACTACAGATAGTTAGTTACATGTCTCTATTCTTGTTTGTTAGCGTATAGAAGTTAAACTCATTCATGAATAGTTTTTATGATATTAAACTAACATGTTTTTACTTGAATAGGGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAAATCATATTTGCGTCGGGTTTAAAATATTCTCTACCATATATGTCTTTATTCTCGAAATCTTATGTCTGAAATCGTTAGTTAAGAATGAAAAAGTAAATTAATGTTATCATAATAGTTATAAACATGGGCCAATTTTTGAAAGGACCAACTCTAGGGTGTAGACAAAATAAATTAAGCTAGAACTAATTAAGATTTAAAGTTATGCATCTATCAATAAATAAAGTTGGTGGCCCTAGTTCATTTGAAATTAACTGCATTGCTGTTTATTAATGGTGCCGAATGTTTATAAAAATTAAAAGGTCGATGAGCTTTCATCTTTTAAATATGAGTTTGTTTGTATTCTTTCATACGTAGATGATATACCATGTTTACTACGTGTTTAATTGAATCCAAAATATTAATGAAATGATCAAAATTATAAATAAAATTATTTGAAATATCTCTCCAAAATAGACCTATTCAATATTTGAATTCGAAACAAGCTACTCAATTCAGATATCAAACCTGAAAAGGTAAAACTTCTTTCATAAAAATAGCATGTGGCAGCAGAGCCGATGTATAATTTATGAATACGATTAATATTGATATTATATATTGTATGGTCAAATAAATATAATTTGTCATAAGCCATGACTTGTGTCGTCTTTATTGAGATTAACAAATACAAATATTTAAATTAACAAAACAAGAGATTAGTCAAGTAGAGAATATATGTCAATTGCTAGATCTACTTTATATATTTTCACTTTTTAAACCTTTATTCCCTCTTTTTATTCCTCCTCGATTTCCATAATTAATTACTCATCCATCAAAAAAAAATAAAAAAATTACTCATCCATCTGCATTTCGTTTATTTTTTCCCTCTCATGTAAATGCAATAGTACTAATTTTTCTCCCTAATGTAAGTTACTTATTAATTACTAATTTATTATAGTAAATAAACTACTATAGTTTATATACATGTAAAATAAAATATTCATATTCTTTTCTTGCTTTAGTTTTTTCGTTTTTCACAATCGAGATTCATCATTATCACATTGTGATAATAATCAAAAAAAAGAAAAGAAAAAAGAA</genome_strand>
        <mrna_strand>GAGACTTGGCATGTGTCACCCGTTGGTGATA...........................................................................................................................................................................................................................GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG...........................................................................................................CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA...............................................................................................................................................................................................................................GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371913" ref_strand="+" ref_description="SGN-E371913 [TUS-30-K4](-)">
      <seq>gctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttgttttcaaacaaggttgatgatgatggtagttggcaaattttcagattttgattgtaattgtcaactctcaatgtgacaaaacatactttgcctattcatttagttcattcttttaaagatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="111016" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110716" g_stop="110415" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E371913" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110716" e_stop="110415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAAATCATATTTG</genome_strand>
        <mrna_strand>GCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTGTTTTCAAACAAGGTTGATGATGATGGTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCAATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAAAGATTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371118" ref_strand="+" ref_description="SGN-E371118 [TUS-28-F3](-)">
      <seq>gaaaggagtgcacaaaaacaagcaaaatcaggcactgagaacgctgggtggtatgaaaattggtgggaaaagtatgatgcaaagggttggacagagaaaggggcacacaaatatggcagattaaacgaacaatcgtggtgggagaaatggggagaacattatgatggaagaggatctgttcttaaatggacagataagtgggcggaaactgagcttggaacaaaatggggagacaagtgggaagagaaatttttcgctggaattggttcgcggcaaggagagacttggcatgtgtcacccgttggtgatagatggtctaggacatggggagaggagcacttcggaaatggcaaagtgcacaagtacggcaagagcacgacaggtgaaagttgggacatcgttgtggatgaaggaacttactacgaggctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttcttctcaaacaaggttgatgttgatgctagttggcaaattttcagattttgattgtaattgtcaactctcgatgtgacaaaacatactttgcctattcatttagttcattcttttaaagatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="112709" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112409" g_stop="112348" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112347" i_stop="112262" i_length="86">
            <donor d_prob="0.701" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112261" g_stop="112136" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="188" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112135" i_stop="111504" i_length="632">
            <donor d_prob="0.837" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111503" g_stop="111382" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="310" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111162" g_stop="111123" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="350" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111015" g_stop="110941" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="425" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110717" g_stop="110416" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="727" r_length="302" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E371118" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112409" e_stop="112348"/>
          <exon e_start="112261" e_stop="112136"/>
          <exon e_start="111503" e_stop="111382"/>
          <exon e_start="111162" e_stop="111123"/>
          <exon e_start="111015" e_stop="110941"/>
          <exon e_start="110717" e_stop="110416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGTGCACAAAAACAAGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTGGTAAGAGATTTTGAGGGGAATAATTAGTTTACATGGTCATGAATACATACACAAAAAGATATTAAGCATTGATATTTCATATACAGGTGGGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGGGCACACAAATATGGCAGATTAAACGAACAATCGTGGTGGGAGAAATGGGGAGAACATTATGATGGAAGAGGATCTGTTCTTAAATGGTACATACCTATTTGTTGTGTTAGTAATTTAGCATCAGACTCTGGCCCTCTTGATATAGTGGAGCTCTGGTGGAGGCACTTTGGTAACTATTGGTAGTGCTTTTCCACTAAACTCTTGGCACTTTGAAGTCCCACGACCTGTTTTTGCCTTTAAATGATGTTAGCTATGTCACCTGAACAAGCAAAAAAGCTTTAGAATACATTCATCCAAGACATAGTGATAAACTAGAACTGCAACGATCTGCTTTGGGTTCACACTTGCAGTAGATAAACCTCTGTTTATGCTGAACTTTTGCTACTGCACTAGTTATTGAAAAGAAATCAAGTTCTAGAATTTAATGGTGAGATAATCTTGACTTTGGTCATTATATGTCCTAACTGGCCCTCTAGAATTGTAATCTCATACAATAGAAACTTGACTGATATCAACAATATTGCTTGAAGACAGAGGTTAAACATCATATTTTACTCTCTTCTTTTCATGACATTATTATAATTGCTTGTTTCTGACTTTTTTTGAATTGGTAAATGGCATTGTTAAAGGGGTGAAAGTTTGTCAAAACCTCCCTAGTGGTCTTGAGTTGCTGACAAGTTGGTTTATATTGCTTATCGTTCCATGCTCCTTTTCTCAGGACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATAGTATGTCTACCTTCTATTTAATTGAATTACATCTTTACATTCCAAAAGGACTTAGGTGCTAAAACACAAAAACCAATTACAAGTTTTTCCTGGTGAAAGCTAAGCTGTTAAAAGAAATTCCCTAACTATCATAATATGTATTACCGTGTCTCTTATTTTGAGTTTTAAGTTAACCAATCATCCAATTCTCTTCTTAGTTTCCTTTTCCTAATTATCCAGGATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGGGTATGTCACAATTATGAATATGAACTAAAATTCAGCTTGTTAGATGTCTATTTCCATGCACTTTTACACTTTAGAAACTTATAAATAATGTTGTTTCCATGAATCAGCAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGAGTAAGTCATAGTTTAGTGTTAGTAGGCTGTAGGATTTAACTTATAACATGGACATTATCACTACAGTTACAGCACGTTGCCTATCTTATTTTTCAAATAACTTGTTCCACTTACTACAGATAGTTAGTTACATGTCTCTATTCTTGTTTGTTAGCGTATAGAAGTTAAACTCATTCATGAATAGTTTTTATGATATTAAACTAACATGTTTTTACTTGAATAGGGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAAATCATATTT</genome_strand>
        <mrna_strand>GAAAGGAGTGCACAAAAACAAGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTG......................................................................................GTGGGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGGGCACACAAATATGGCAGATTAAACGAACAATCGTGGTGGGAGAAATGGGGAGAACATTATGATGGAAGAGGATCTGTTCTTAAATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATA...........................................................................................................................................................................................................................GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG...........................................................................................................CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA...............................................................................................................................................................................................................................GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAAAGATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348711" ref_strand="+" ref_description="SGN-E348711 [cTOF-30-N14]">
      <seq>tgttcttaaatggacagataagtgggcggaaactgagcttggaacaaaatggggagacaagtgggaagagaaatttttcgctggaattggttcgcggcaaggagagacttggcatgtgtcacccgttggtgatagatggtctaggacatggggagaggagcacttcggaaatggcaaagtgcacaagtacggcaagagcacgacaggtgaaagttgggacatcgttgtggatgaaggaacttactacgaggctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttcttctcaaacaaggttgatgttgatgctagttggcaaattttcagattttgattgtaattgtcaactctcgatgtgacaaaacatactttgcctattcatttagttcattcttttagagatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="111804" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111503" g_stop="111382" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="134" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111162" g_stop="111123" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="174" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111015" g_stop="110941" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="249" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110717" g_stop="110425" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="542" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="554"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E348711" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111503" e_stop="111382"/>
          <exon e_start="111162" e_stop="111123"/>
          <exon e_start="111015" e_stop="110941"/>
          <exon e_start="110717" e_stop="110425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATAGTATGTCTACCTTCTATTTAATTGAATTACATCTTTACATTCCAAAAGGACTTAGGTGCTAAAACACAAAAACCAATTACAAGTTTTTCCTGGTGAAAGCTAAGCTGTTAAAAGAAATTCCCTAACTATCATAATATGTATTACCGTGTCTCTTATTTTGAGTTTTAAGTTAACCAATCATCCAATTCTCTTCTTAGTTTCCTTTTCCTAATTATCCAGGATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGGGTATGTCACAATTATGAATATGAACTAAAATTCAGCTTGTTAGATGTCTATTTCCATGCACTTTTACACTTTAGAAACTTATAAATAATGTTGTTTCCATGAATCAGCAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGAGTAAGTCATAGTTTAGTGTTAGTAGGCTGTAGGATTTAACTTATAACATGGACATTATCACTACAGTTACAGCACGTTGCCTATCTTATTTTTCAAATAACTTGTTCCACTTACTACAGATAGTTAGTTACATGTCTCTATTCTTGTTTGTTAGCGTATAGAAGTTAAACTCATTCATGAATAGTTTTTATGATATTAAACTAACATGTTTTTACTTGAATAGGGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA</genome_strand>
        <mrna_strand>GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATA...........................................................................................................................................................................................................................GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG...........................................................................................................CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA...............................................................................................................................................................................................................................GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285720" ref_strand="+" ref_description="SGN-E285720 [cLES-5-P18]">
      <seq>ctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttgttttcaaacaaggttgatgatgatggtagttggcaaattttcagattttgattgtaattgtcaactctcaatgtgacaaaacatactttgcctattcatttagttcattcttttagagatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="111015" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110715" g_stop="110425" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="302"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E285720" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110715" e_stop="110425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA</genome_strand>
        <mrna_strand>CTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTGTTTTCAAACAAGGTTGATGATGATGGTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCAATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371914" ref_strand="+" ref_description="SGN-E371914 [TUS-30-K4]">
      <seq>ctgaacctcactacggatgggcagatgttgtaggcaattcatcccagttattgtcaatccaacctcgagacagaccgcccggtgtgttcccatcaatggattttggtccatctctgcctccagaagatgagttgcctcccaccttgtcacaatgacaagttggtttgttttcaaacaaggttgatgatgatggtagttggcaaattttcagattttgattgtaattgtcaactctcaatgtgacaaaacatactttgcctattcatttagttcattcttttagagatttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="111015" stop="110119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110715" g_stop="110425" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="302"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E371914" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110715" e_stop="110425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA</genome_strand>
        <mrna_strand>CTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTGTTTTCAAACAAGGTTGATGATGATGGTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCAATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E726801" ref_strand="+" ref_description="SGN-E726801 [LA12DD11]">
      <seq>gtttctctgaatctccatctgaacttcactcacttctagggctttatcaacacattcttctacctccaatggcattcttttgagcaataatggcggcttcggcttcttccagaggattcacagcgcccataggggcggctaagctgcccacagttgaggtgttccctacattacctaatggttttgtagaatttcgaaggaagaagaggagtagtaccggaggtttcttcagtatacaatgttgttgttcagattctgtgatgccaattagaggtggtagtggttctgggaatggcgttgataaaggtgatgatgggaggttcgattctaagaagatcactgctaattatatgagaactcaagcttcttccccaatgccctttgcatctcctcagtctagatttgtttcaaagccagaaaaattcttttcccgatgcaccccaagaagttcaggccctaagtcccgtgattctccaccaaaacgagacacgggcattgctaatgagaaagattggggcatcagtatgctaaatgataatgtcaatgaaactggagtaaacgaggacggcagtacatggtatcgggagagtggggaagaccttggtgacaatggataccgatgccgatggacaaggatgggtggtcatagcagtgatggtaccttagaatggaaagaaacgtggtgggagaaaagtgattggactggatacaaagaactcggtgttgagaaatccgggaaaaatgttgaaggggacgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="115909" stop="112277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115609" g_stop="115216" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113853" g_stop="113762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="486" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113668" g_stop="113475" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="680" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113474" i_stop="112798" i_length="677">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112797" g_stop="112758" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="720" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112757" i_stop="112615" i_length="143">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112614" g_stop="112577" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="758" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E726801" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115609" e_stop="115216"/>
          <exon e_start="113853" e_stop="113762"/>
          <exon e_start="113668" e_stop="113475"/>
          <exon e_start="112797" e_stop="112758"/>
          <exon e_start="112614" e_stop="112577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTCTGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCAGTAAGTCAATTTTTATTTGCACTACATTTCTTGCAATCAATCTTCATAATAACTGGAATAGGTGGTTGAATTGTAAGAAATACTTTTTGAACCATGAATGACTAATATAATTAAATGAGGCAAATTTAGCAAAATGGATATTGAGGATTCATATAGGTGAACCGAAAAGGGTGTTGCTTGTTTGGTTATTGAATATTTTATTTTTTTGGGTTTCCCATCCTGTATCTAGTAACCACATTGTAGCCAAACTAATCCGGATTCCATTGATGAAAGCTCCCCACATCCTGTGGTTGTTGAACTTATAATAAGGTTAGTTAGTGTGTATTGTTATGTCCACTTGCAAAATTGTCAAACAATGTCATATTCAAAGTAAATCATTATCCATGATTAAGCTGAATCACTTCAAGGTTGGAGAGTGATTAGTAGTAATTTTCTTATTATTCTAAGAGCTAAAGTCACCTCCTTTATTAGGTTCTTAGGATGCTTTAGAAGTAATGTGATATTTATGTATGAAAGAATTAACTTTAGATGTTATTTGGCAGAAGCTGATGAGACATCACATGGGTTTGTTTGGACAGACATTATGATTAGCTTAAATGAAAACAAAAAAAAATATTTTCTTTCTGTCATTGATATGTTGTAGAGATTTGTATGTTTTGTTCTTTCCTATTCTGGTACAAAAGAGAATTTTGTATCATATTGTTTATCAACACCTGAACCCCTTTCAAATATGTTGCTTTTAGCAATCTGGATACCAGTTTGTATGGATTATACTGAGGTTAGTTTGAGCTCTTAGTCAGATATTGCTGTGTCCACTTGCAAAGTTCTTGAACAATTTCATATCAAAGTAATAGATTCTATTGCATCGAATTAATACATGCTTAAACTGCACTCAAGGTTGGTTGGACTAGTTAATAATAATCTTTTATTATAAGAGCTAAAGTTGCAACTTTTACGAGTTCCTAGGATATTCTAGTTATCTAAGAAGTAATCCGGAGGTAATTAGATAAAATCTGTTTGTTTCATTTCATACTATGAATTTTACAATTGATTTGGATGTATCTTCATGTTATTGTCAAGGCATGAAGAAAAATAAGAGATATTCTATTGTTAAAAAAATTCTGCGTTTTGTTAATATCACTTCCTCTATTTATGCTACTTATAGTTTTTGAATGGTCAATAACAAACCCTTCATTATAGGCCCGATAATCTTGATGTGGACTCCAAAGTAGTGTTTGACTTTCTAGCATCTCGAATATCTTCACGGTTTACAGACTCCATCTTTCCATGTTGTGTGTCCTGCATACTTGATTGGAAGTAGCTGTTTTTTTCGGTGATTTTCATCAACTTTTCTATACGCAGGTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAGGTAGTTATGGCTCCTTCCTTTTTGGTTTTTATAAGAGTGTTTCTCTTTTCAGATAAAATTGATAATTTCGTTTATCACCCTTCCTTTCTATAGACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACGGTACGCATGTTCTTAATCTTGTGTATGGTTGTATTGTTGTAGATCTTGAAGATTGAATTGTAAAAATATACTTGAAAACCTATTATGTGGGATCACCTTTTCCAAGGACGAACATCTCATTTTTTTGCGTAAATTAATATTTACCTGATGTGCAATCTCAAGAGTATGAAACTAAAACCTTAACACAGAACTGTAATGTCTTAACTACATTGATGACACAAGCCCAAGAAGTAGAGGTTTAGCTAAAGGAGAATAACAAGAACTTTTCATGTCTAGTCATCACATGAATCAATTTTCTTTGCTGGTTTTGAATGCACATGTTTTTCTCTGGCTAGGCTTGTGGACTGTTGAGCCAGTGATAAGTGTGTAGAATATGGGGAATGTTTATCTATCAGAAAATTAACTTTATGTCCTAAACTTGAACACAATGTACTTTTTTTATTGGAGTTTGGGAATGATTGGATAATAATATGACAGACAATTAAAAGGTTTATTAGTTAACTGTGAATACCTTATTCTGATGGATAAAGTACCGCAAATAAGTTCTTGCATCCTCTTTAACAAACTTGTTGAAGAAACATTGGAATCCAAGTTTCATTGTAGACATTATTTTATAACCTTATCAAGTACCATCCCAGGTGGATGCTTTTAATTGGATTTGTTGATCTCCTTGACAGTGGTGGGAGAAAAGTGATTGGACTGGATACAAAGAACTCGGTATGACTTTTTACTTTAAATATGTATAACCTTGCTGCATTTGGTATAAATTTTCTATCTTACAATGGTTTTTAGTGATTCCATCGTCATCCTTTATTTTGTACTTCATGAAGCGTCAAGTTTTCCCTTTGTATAATTAACAGGTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCA</genome_strand>
        <mrna_strand>GTTTCTCTGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG.............................................................................................ACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCATAGCAGTGATGGTACCTTAGAATGGAAAGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGAGAAAAGTGATTGGACTGGATACAAAGAACTCG...............................................................................................................................................GTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371119" ref_strand="+" ref_description="SGN-E371119 [TUS-28-F3]">
      <seq>gaatctccatctgaacttcactcacttctagggctttatcaacacattcttctacctccaatggcattcttttgagcaataatggcggcttcggcttcttccagaggattcacagcgcccataggggcggctaagctgcccacagttgaggtgttccctacattacctaatggttttgtagaatttcgaaggaagaagaggagtagtaccggaggtttcttcagtatacaatgttgttgttcagattctgtgatgccaattagaggtggtagtggttctgggaatggcgttgataaaggtgatgatgggaggttcgattctaagaagatcactgctaattatatgagaactcaagcttcttccccaatgccctttgcatctcctcagtctagatttgtttcaaagccagaaaaattcttttcccgatgcaccccaagaagttcaggccctaagtcccgtgattctccaccaaaacgagacacgggcattgctaatgagaaagattggggcatcagtatgctaaatgataatgtcaatgaaactggagtaaacgaggacggcagtacatggtatcgggagagtggggaagaccttggtgacaatggataccgatgccgatggacaaggatgggtggtcagagcagtgatggtaccttagaatggaaagaaacgtggtgggagaaaagtgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="115901" stop="112478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115601" g_stop="115216" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113853" g_stop="113762" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="478" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113668" g_stop="113475" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="672" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113474" i_stop="112798" i_length="677">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112797" g_stop="112778" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="692" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E371119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115601" e_stop="115216"/>
          <exon e_start="113853" e_stop="113762"/>
          <exon e_start="113668" e_stop="113475"/>
          <exon e_start="112797" e_stop="112778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCAGTAAGTCAATTTTTATTTGCACTACATTTCTTGCAATCAATCTTCATAATAACTGGAATAGGTGGTTGAATTGTAAGAAATACTTTTTGAACCATGAATGACTAATATAATTAAATGAGGCAAATTTAGCAAAATGGATATTGAGGATTCATATAGGTGAACCGAAAAGGGTGTTGCTTGTTTGGTTATTGAATATTTTATTTTTTTGGGTTTCCCATCCTGTATCTAGTAACCACATTGTAGCCAAACTAATCCGGATTCCATTGATGAAAGCTCCCCACATCCTGTGGTTGTTGAACTTATAATAAGGTTAGTTAGTGTGTATTGTTATGTCCACTTGCAAAATTGTCAAACAATGTCATATTCAAAGTAAATCATTATCCATGATTAAGCTGAATCACTTCAAGGTTGGAGAGTGATTAGTAGTAATTTTCTTATTATTCTAAGAGCTAAAGTCACCTCCTTTATTAGGTTCTTAGGATGCTTTAGAAGTAATGTGATATTTATGTATGAAAGAATTAACTTTAGATGTTATTTGGCAGAAGCTGATGAGACATCACATGGGTTTGTTTGGACAGACATTATGATTAGCTTAAATGAAAACAAAAAAAAATATTTTCTTTCTGTCATTGATATGTTGTAGAGATTTGTATGTTTTGTTCTTTCCTATTCTGGTACAAAAGAGAATTTTGTATCATATTGTTTATCAACACCTGAACCCCTTTCAAATATGTTGCTTTTAGCAATCTGGATACCAGTTTGTATGGATTATACTGAGGTTAGTTTGAGCTCTTAGTCAGATATTGCTGTGTCCACTTGCAAAGTTCTTGAACAATTTCATATCAAAGTAATAGATTCTATTGCATCGAATTAATACATGCTTAAACTGCACTCAAGGTTGGTTGGACTAGTTAATAATAATCTTTTATTATAAGAGCTAAAGTTGCAACTTTTACGAGTTCCTAGGATATTCTAGTTATCTAAGAAGTAATCCGGAGGTAATTAGATAAAATCTGTTTGTTTCATTTCATACTATGAATTTTACAATTGATTTGGATGTATCTTCATGTTATTGTCAAGGCATGAAGAAAAATAAGAGATATTCTATTGTTAAAAAAATTCTGCGTTTTGTTAATATCACTTCCTCTATTTATGCTACTTATAGTTTTTGAATGGTCAATAACAAACCCTTCATTATAGGCCCGATAATCTTGATGTGGACTCCAAAGTAGTGTTTGACTTTCTAGCATCTCGAATATCTTCACGGTTTACAGACTCCATCTTTCCATGTTGTGTGTCCTGCATACTTGATTGGAAGTAGCTGTTTTTTTCGGTGATTTTCATCAACTTTTCTATACGCAGGTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAGGTAGTTATGGCTCCTTCCTTTTTGGTTTTTATAAGAGTGTTTCTCTTTTCAGATAAAATTGATAATTTCGTTTATCACCCTTCCTTTCTATAGACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACGGTACGCATGTTCTTAATCTTGTGTATGGTTGTATTGTTGTAGATCTTGAAGATTGAATTGTAAAAATATACTTGAAAACCTATTATGTGGGATCACCTTTTCCAAGGACGAACATCTCATTTTTTTGCGTAAATTAATATTTACCTGATGTGCAATCTCAAGAGTATGAAACTAAAACCTTAACACAGAACTGTAATGTCTTAACTACATTGATGACACAAGCCCAAGAAGTAGAGGTTTAGCTAAAGGAGAATAACAAGAACTTTTCATGTCTAGTCATCACATGAATCAATTTTCTTTGCTGGTTTTGAATGCACATGTTTTTCTCTGGCTAGGCTTGTGGACTGTTGAGCCAGTGATAAGTGTGTAGAATATGGGGAATGTTTATCTATCAGAAAATTAACTTTATGTCCTAAACTTGAACACAATGTACTTTTTTTATTGGAGTTTGGGAATGATTGGATAATAATATGACAGACAATTAAAAGGTTTATTAGTTAACTGTGAATACCTTATTCTGATGGATAAAGTACCGCAAATAAGTTCTTGCATCCTCTTTAACAAACTTGTTGAAGAAACATTGGAATCCAAGTTTCATTGTAGACATTATTTTATAACCTTATCAAGTACCATCCCAGGTGGATGCTTTTAATTGGATTTGTTGATCTCCTTGACAGTGGTGGGAGAAAAGTGATTG</genome_strand>
        <mrna_strand>GAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG.............................................................................................ACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGGAGAAAAGTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270683" ref_strand="+" ref_description="SGN-E270683 [cLEM-6-I18]">
      <seq>gaatctccatctgaacttcactcacttctagggctttatcaacacattcttctacctccaatggcattcttttgagcaataatggcggcttcggcttcttccagaggattcacagcgcccataggggcggctaagctgcccacagttgaggtgttccctaccattacctaatggttttgtagaatttcgaaggaagaagaggagtagtaccggaggtttcttcagtatacaatgttgttgttcagattctgtgatgccaattagaggtggtagtggttctgggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="115901" stop="115017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115601" g_stop="115317" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E270683" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115601" e_stop="115317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTA-CATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAAT</genome_strand>
        <mrna_strand>GAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACCATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391892" ref_strand="+" ref_description="SGN-E391892 [TUS-24-M19](-)">
      <seq>gggatttacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaagatgaatctgggatacatatatgggatcttagaatgctgaagtttcccgtccctgatctccctggacatactcactggacatggactgtcaagtgcaatcccgaacatgaagacttaattctgagtgctggaactgattctgcggtcaatctgtggctggcttttcttcctagtagtgacgaaccaactccagagagctttgactcccctaataagccagtggatccattgcttaattcatatagtgactacgaagacagtgtgtatggacttgcttggagctgtcgagagccatggatatttgcatcattgtcatatgatggaagggtaaggccttttatgggttattcatcagaagaaccaagaaaaaaatacacatgtctctggataataaccagcagattttgcaatcttgaactattcttgctttggtttgtataaacaataggaagtgttgctgcgaatgctattttattttttggacaattgtgagagaaaaatttaaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="121238" stop="118338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="89" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="178" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119571" g_stop="119526" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="224" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119230" g_stop="119157" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="298" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119025" g_stop="118955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="369" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118954" i_stop="118882" i_length="73">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118881" g_stop="118642" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="609" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="623"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E391892" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119526"/>
          <exon e_start="119230" e_stop="119157"/>
          <exon e_start="119025" e_stop="118955"/>
          <exon e_start="118881" e_stop="118642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCCACAATTTTCTATGCTGAATTTCCCCAGAAAATAAAAGCAGTCTATCTGATACTTCTACATATATGATGTTTAGCTTCTTTTAGGACACTCGCACTGAAATCTCTTGACAGCATGTGCATGTCTTATCTACTATGCATATAGTTTTAGTTTTAAAAACAAGCTTCCTGTCTACCTTGGTCATTGATATTTTGTTGCTGAAACAAAAATTTTGGCAGAGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAGGTCCTTTCCGTAAACCCTCCGCCCTTTCTCTGTAAAAAAGAAAAGGAAGAGAAGCCTAACAAAGAAAAAAAGAAGCAGCACTCGAAAAGTATCTTATCTCACTGTATCTCATAAAGTTTGTTCGTTTTCAGCTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATGGTAAGTACACATTTGCTGTTTCCTTATCAGCTGAGTTTTTAAGCGACATTTGATTTATCCATCTTGGTTCTAGGACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGGAAGGGTAAGGCCTCTTATGGGTTATTCATCAGAAGAACCAAGAAAAAAATACACATGTCTCTGGATAATAACCAGCAGATTTTGCAATCTTGAACTATTCTTGCTTTGGTTTGTATAAACAATAGGAAGTGTTGCTGCGAATGCTATTTTATTTTTTGGACAATTGTGAGAGAAAAATTTAAATA</genome_strand>
        <mrna_strand>GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCCGTCCCTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG.......................................................................................................................................................................................................................................................................................................AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTTTCTTCCTAGTAGTGACGAACCAACTCCAGAGAG...................................................................................................................................CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATG.........................................................................GACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGGAAGGGTAAGGCCTTTTATGGGTTATTCATCAGAAGAACCAAGAAAAAAATACACATGTCTCTGGATAATAACCAGCAGATTTTGCAATCTTGAACTATTCTTGCTTTGGTTTGTATAAACAATAGGAAGTGTTGCTGCGAATGCTATTTTATTTTTTGGACAATTGTGAGAGAAAAATTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235813" ref_strand="+" ref_description="SGN-E235813 [cLED-15-D19]">
      <seq>ttcaaagaagaatgcacaggtacaatcacaagaatcagcaggtgtgctacattcgttaactgggggcgcctgggatccccatgattataatgctctggcactgacaagtgaatcatcagtccaactttgggatctacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaagatgaatctgggatacatatatgggatcttagaatgctgaagtttccagtccttgatctccctggacatactcactggacatggactgtcaagtgcaatcccgaacatgaagacttaattctgagtgctggaactgattctgcggtcaatctgtggctggcttctcttcctagtagtgacgaaccaactccagagagctttgactcccctaataagccagtggatccattgcttaattcatatagtgactacgaagacagtgtgtatggacttgcttggagctgtcgagagccatggatatttgcatcattgtcatatgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="122843" stop="118527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122543" g_stop="122525" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733">
            <donor d_prob="0.965" d_score="0.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121791" g_stop="121664" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="147" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="217" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="306" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119571" g_stop="119526" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="352" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119230" g_stop="119157" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="426" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119025" g_stop="118955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="497" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="118954" i_stop="118882" i_length="73">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="118881" g_stop="118827" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="552" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E235813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122543" e_stop="122525"/>
          <exon e_start="121791" e_stop="121664"/>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119526"/>
          <exon e_start="119230" e_stop="119157"/>
          <exon e_start="119025" e_stop="118955"/>
          <exon e_start="118881" e_stop="118827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGAAGAATGCACAGGTATATTCCAGAATATGGCTATACTTAGCTCTGGCCTTATAAAATGACCAACTAAAATGTTTCATCTTGATTTTATTTTAGTTTTCACTTCAGAAAAGTGCTGCTCGTGTTTGGTCTTCCAGTTTACATTTTTTTTGACCCATACATGCTTTATTGAGCAGTCATTTCTTTTATGCTACTGCAAGATGTATATCATTGTTTTGGAAAAGCAAAGGCACAGTAGACTATACTATGGTTGTGCATGAATGTTTACCTTCTTATAGTTTGAAAGTGCTGTGAACTGAACTTAGACTGTTAGGCATAGTAATACTCTTGTTAACACGTAAAGGGTAAAAGCTTATGAATCATTTGAAATGGCATATATGATGGCTAAAAGTCTACCGGTGCTCCTCATGGTTGGAGGTTTTAAATACTGAACTGTTTGATTACTTAAAGTAGATTTCTTGAAATAAACTTGTAATTTGCATCCCTTAGAGTGCTTCTGTTTCATCTAAAACCTAGATTTTGCTGGCTTGGAAATAATATTATCTTGATGATATTCTTTTGGTTAGCATATCTTCACACTCTTGTTTGAAATACAAGGTAGTCTGCAGTTTACCTTAGGCTTCTATGTGTCTCATCTTCGGGGATACCACCCTTCTTTGCTGCCAGAGAACCTCAAACATAGTTGTAAAAGTGTTGTTACTTCTGATTCGTGGGGCTAATTTTTATTCAGGTCTGCTGCAAAATTTAGGTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAAGTAAGTGAATATGGTAATTGATTCCCTATATTCTGTGTCATTTGTTTATGTTATTCTTTGTTCACTTGTGAATATAAGGTCAAGATAAATCATCCAAGAAAAAAAATGTAAGAAAGTACTTTGGAAGGTAAATGGCTAGTGTGGCATGGACAGTTATGTCCCTTAAGTACAAAATATACTTTGAATTTTGAAATGGGAGGCAAAAGAGAATATTTTCATGTACCTGAGATGGCTTAATCTCTAAGAGAATCCCCACCCCCACCCCCCACCCTCGACACACACACAATAAAGAACATACTCCCATCAATGTCAATGAACCCAGTGTTATAAATTTATTGATCTAAATCATAGTTTGTCATAGATGAAGAAAGAGACTGAATAGTTTCAAGGGCCTAAAGATAATGTAGTGCATGCTTATAACAAAAAGGGTAAATGTTTAAGGCTCAATCTGGACATTGTGTCACAGAACAGGTCAAGAAGTACTTTACTTCTAATTTCTGTACTCCCATACCCCTTTTACACCCTGTACTGGATATTGATTCACTCAAGTCACATAGCTTTTTAGTTTGGGCACATACTAGCTCTGAAGTAGATTCTTGTGTGACCGTTCTCAGGATAACATCTTCTGGTCTTTTGCTTGGCTTGTAATATTTTATGAAGCTATTTTTGCTTTTATCCATTAACTTGAATGATTAGTTTGCACAATTTACATCATGGTTAATTCTACTGCAGGAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCCACAATTTTCTATGCTGAATTTCCCCAGAAAATAAAAGCAGTCTATCTGATACTTCTACATATATGATGTTTAGCTTCTTTTAGGACACTCGCACTGAAATCTCTTGACAGCATGTGCATGTCTTATCTACTATGCATATAGTTTTAGTTTTAAAAACAAGCTTCCTGTCTACCTTGGTCATTGATATTTTGTTGCTGAAACAAAAATTTTGGCAGAGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAGGTCCTTTCCGTAAACCCTCCGCCCTTTCTCTGTAAAAAAGAAAAGGAAGAGAAGCCTAACAAAGAAAAAAAGAAGCAGCACTCGAAAAGTATCTTATCTCACTGTATCTCATAAAGTTTGTTCGTTTTCAGCTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATGGTAAGTACACATTTGCTGTTTCCTTATCAGCTGAGTTTTTAAGCGACATTTGATTTATCCATCTTGGTTCTAGGACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGG</genome_strand>
        <mrna_strand>TTCAAAGAAGAATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG.......................................................................................................................................................................................................................................................................................................AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAG...................................................................................................................................CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATG.........................................................................GACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235712" ref_strand="+" ref_description="SGN-E235712 [cLED-15-D4]">
      <seq>tggcactgacaagtgaatcatcagtccaactttgggatctacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaagatgaatctgggatacatatatgggatcttagaatgctgaagtttccagtccttgatctccctggacatactcactggacatggactgtcaagtgcaatcccgaacatgaagacttaattctgagtgctggaactgattctgcggtcaatctgtggctggcttctcttcctagtagtgacgaaccaactccagagagctttgactcccctaataagccagtggatccattgcttaattcatatagtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="122015" stop="118674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121715" g_stop="121664" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="122" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="211" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119571" g_stop="119526" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="257" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119230" g_stop="119157" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="331" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119025" g_stop="118974" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="383" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E235712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121715" e_stop="121664"/>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119526"/>
          <exon e_start="119230" e_stop="119157"/>
          <exon e_start="119025" e_stop="118974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAAGTAAGTGAATATGGTAATTGATTCCCTATATTCTGTGTCATTTGTTTATGTTATTCTTTGTTCACTTGTGAATATAAGGTCAAGATAAATCATCCAAGAAAAAAAATGTAAGAAAGTACTTTGGAAGGTAAATGGCTAGTGTGGCATGGACAGTTATGTCCCTTAAGTACAAAATATACTTTGAATTTTGAAATGGGAGGCAAAAGAGAATATTTTCATGTACCTGAGATGGCTTAATCTCTAAGAGAATCCCCACCCCCACCCCCCACCCTCGACACACACACAATAAAGAACATACTCCCATCAATGTCAATGAACCCAGTGTTATAAATTTATTGATCTAAATCATAGTTTGTCATAGATGAAGAAAGAGACTGAATAGTTTCAAGGGCCTAAAGATAATGTAGTGCATGCTTATAACAAAAAGGGTAAATGTTTAAGGCTCAATCTGGACATTGTGTCACAGAACAGGTCAAGAAGTACTTTACTTCTAATTTCTGTACTCCCATACCCCTTTTACACCCTGTACTGGATATTGATTCACTCAAGTCACATAGCTTTTTAGTTTGGGCACATACTAGCTCTGAAGTAGATTCTTGTGTGACCGTTCTCAGGATAACATCTTCTGGTCTTTTGCTTGGCTTGTAATATTTTATGAAGCTATTTTTGCTTTTATCCATTAACTTGAATGATTAGTTTGCACAATTTACATCATGGTTAATTCTACTGCAGGAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCCACAATTTTCTATGCTGAATTTCCCCAGAAAATAAAAGCAGTCTATCTGATACTTCTACATATATGATGTTTAGCTTCTTTTAGGACACTCGCACTGAAATCTCTTGACAGCATGTGCATGTCTTATCTACTATGCATATAGTTTTAGTTTTAAAAACAAGCTTCCTGTCTACCTTGGTCATTGATATTTTGTTGCTGAAACAAAAATTTTGGCAGAGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAGGTCCTTTCCGTAAACCCTCCGCCCTTTCTCTGTAAAAAAGAAAAGGAAGAGAAGCCTAACAAAGAAAAAAAGAAGCAGCACTCGAAAAGTATCTTATCTCACTGTATCTCATAAAGTTTGTTCGTTTTCAGCTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGAC</genome_strand>
        <mrna_strand>TGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG.......................................................................................................................................................................................................................................................................................................AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAG...................................................................................................................................CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396503" ref_strand="+" ref_description="SGN-E396503 [TUS-24-M19]">
      <seq>attctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgacaagttggttagcattgatgaacagaatcttttcctctggagctttgatacttcaaagaagaatgcacaggtacaatcacaagaatcagcaggtgtgctacattcgttaactgggggcgcctgggatccccatgattataatgctctggcactgacaagtgaatcatcagtccaactttgggatctacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaagatgaatctgggatacatatatgggatcttagaatgctgaagttggggggcggtgatctccctggacatactcactggacatggactgtcaagtgcaatcccgaacatgaagacttaattctgagtgctggaactgattctgcggtcaatctgtggctggcttctcttcctagtagtgacgaaccaactccaaaaagctttgactcccctaataagccagtggatccattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="123912" stop="118691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123612" g_stop="123555" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122624" g_stop="122525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="158" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121791" g_stop="121664" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="286" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="356" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="445" r_length="89" r_score="0.921"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="0.86"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119571" g_stop="119526" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="491" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119230" g_stop="119157" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="565" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.897" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119025" g_stop="118991" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="600" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E396503" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123612" e_stop="123555"/>
          <exon e_start="122624" e_stop="122525"/>
          <exon e_start="121791" e_stop="121664"/>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119526"/>
          <exon e_start="119230" e_stop="119157"/>
          <exon e_start="119025" e_stop="118991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAGGTATATTCCAGAATATGGCTATACTTAGCTCTGGCCTTATAAAATGACCAACTAAAATGTTTCATCTTGATTTTATTTTAGTTTTCACTTCAGAAAAGTGCTGCTCGTGTTTGGTCTTCCAGTTTACATTTTTTTTGACCCATACATGCTTTATTGAGCAGTCATTTCTTTTATGCTACTGCAAGATGTATATCATTGTTTTGGAAAAGCAAAGGCACAGTAGACTATACTATGGTTGTGCATGAATGTTTACCTTCTTATAGTTTGAAAGTGCTGTGAACTGAACTTAGACTGTTAGGCATAGTAATACTCTTGTTAACACGTAAAGGGTAAAAGCTTATGAATCATTTGAAATGGCATATATGATGGCTAAAAGTCTACCGGTGCTCCTCATGGTTGGAGGTTTTAAATACTGAACTGTTTGATTACTTAAAGTAGATTTCTTGAAATAAACTTGTAATTTGCATCCCTTAGAGTGCTTCTGTTTCATCTAAAACCTAGATTTTGCTGGCTTGGAAATAATATTATCTTGATGATATTCTTTTGGTTAGCATATCTTCACACTCTTGTTTGAAATACAAGGTAGTCTGCAGTTTACCTTAGGCTTCTATGTGTCTCATCTTCGGGGATACCACCCTTCTTTGCTGCCAGAGAACCTCAAACATAGTTGTAAAAGTGTTGTTACTTCTGATTCGTGGGGCTAATTTTTATTCAGGTCTGCTGCAAAATTTAGGTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAAGTAAGTGAATATGGTAATTGATTCCCTATATTCTGTGTCATTTGTTTATGTTATTCTTTGTTCACTTGTGAATATAAGGTCAAGATAAATCATCCAAGAAAAAAAATGTAAGAAAGTACTTTGGAAGGTAAATGGCTAGTGTGGCATGGACAGTTATGTCCCTTAAGTACAAAATATACTTTGAATTTTGAAATGGGAGGCAAAAGAGAATATTTTCATGTACCTGAGATGGCTTAATCTCTAAGAGAATCCCCACCCCCACCCCCCACCCTCGACACACACACAATAAAGAACATACTCCCATCAATGTCAATGAACCCAGTGTTATAAATTTATTGATCTAAATCATAGTTTGTCATAGATGAAGAAAGAGACTGAATAGTTTCAAGGGCCTAAAGATAATGTAGTGCATGCTTATAACAAAAAGGGTAAATGTTTAAGGCTCAATCTGGACATTGTGTCACAGAACAGGTCAAGAAGTACTTTACTTCTAATTTCTGTACTCCCATACCCCTTTTACACCCTGTACTGGATATTGATTCACTCAAGTCACATAGCTTTTTAGTTTGGGCACATACTAGCTCTGAAGTAGATTCTTGTGTGACCGTTCTCAGGATAACATCTTCTGGTCTTTTGCTTGGCTTGTAATATTTTATGAAGCTATTTTTGCTTTTATCCATTAACTTGAATGATTAGTTTGCACAATTTACATCATGGTTAATTCTACTGCAGGAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCCACAATTTTCTATGCTGAATTTCCCCAGAAAATAAAAGCAGTCTATCTGATACTTCTACATATATGATGTTTAGCTTCTTTTAGGACACTCGCACTGAAATCTCTTGACAGCATGTGCATGTCTTATCTACTATGCATATAGTTTTAGTTTTAAAAACAAGCTTCCTGTCTACCTTGGTCATTGATATTTTGTTGCTGAAACAAAAATTTTGGCAGAGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAGGTCCTTTCCGTAAACCCTCCGCCCTTTCTCTGTAAAAAAGAAAAGGAAGAGAAGCCTAACAAAGAAAAAAAGAAGCAGCACTCGAAAAGTATCTTATCTCACTGTATCTCATAAAGTTTGTTCGTTTTCAGCTTTGACTCCCCTAATAAGCCAGTGGATCCATTGC</genome_strand>
        <mrna_strand>ATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTGGGGGGCGGTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG.......................................................................................................................................................................................................................................................................................................AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAAAAAG...................................................................................................................................CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246516" ref_strand="+" ref_description="SGN-E246516 [cLEF-45-K9]">
      <seq>ttctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgacaagttggttagcattgatgaacagaatcttttcctctggagctttgatacttcaaagaagaatgcacaggtacaatcacaagaatcagcaggtgtgctacattcgttaactgggggcgcctgggatccccatgattataatgctctggcactgacaagtgaatcatcagtccaactttgggatctacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaagatgaatctgggatacatatatgggatcttagaatgctgaagtttccagtccttgatctccctggacatactcactggacatggactgtcaagtgcaatcccgaacatgaagacttaattctgagtgctggaactgattctgcggtcaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="123911" stop="118901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123611" g_stop="123555" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122624" g_stop="122525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="157" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121791" g_stop="121664" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="285" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="355" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="444" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119571" g_stop="119526" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="490" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119230" g_stop="119201" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="520" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E246516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123611" e_stop="123555"/>
          <exon e_start="122624" e_stop="122525"/>
          <exon e_start="121791" e_stop="121664"/>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119526"/>
          <exon e_start="119230" e_stop="119201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAGGTATATTCCAGAATATGGCTATACTTAGCTCTGGCCTTATAAAATGACCAACTAAAATGTTTCATCTTGATTTTATTTTAGTTTTCACTTCAGAAAAGTGCTGCTCGTGTTTGGTCTTCCAGTTTACATTTTTTTTGACCCATACATGCTTTATTGAGCAGTCATTTCTTTTATGCTACTGCAAGATGTATATCATTGTTTTGGAAAAGCAAAGGCACAGTAGACTATACTATGGTTGTGCATGAATGTTTACCTTCTTATAGTTTGAAAGTGCTGTGAACTGAACTTAGACTGTTAGGCATAGTAATACTCTTGTTAACACGTAAAGGGTAAAAGCTTATGAATCATTTGAAATGGCATATATGATGGCTAAAAGTCTACCGGTGCTCCTCATGGTTGGAGGTTTTAAATACTGAACTGTTTGATTACTTAAAGTAGATTTCTTGAAATAAACTTGTAATTTGCATCCCTTAGAGTGCTTCTGTTTCATCTAAAACCTAGATTTTGCTGGCTTGGAAATAATATTATCTTGATGATATTCTTTTGGTTAGCATATCTTCACACTCTTGTTTGAAATACAAGGTAGTCTGCAGTTTACCTTAGGCTTCTATGTGTCTCATCTTCGGGGATACCACCCTTCTTTGCTGCCAGAGAACCTCAAACATAGTTGTAAAAGTGTTGTTACTTCTGATTCGTGGGGCTAATTTTTATTCAGGTCTGCTGCAAAATTTAGGTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAAGTAAGTGAATATGGTAATTGATTCCCTATATTCTGTGTCATTTGTTTATGTTATTCTTTGTTCACTTGTGAATATAAGGTCAAGATAAATCATCCAAGAAAAAAAATGTAAGAAAGTACTTTGGAAGGTAAATGGCTAGTGTGGCATGGACAGTTATGTCCCTTAAGTACAAAATATACTTTGAATTTTGAAATGGGAGGCAAAAGAGAATATTTTCATGTACCTGAGATGGCTTAATCTCTAAGAGAATCCCCACCCCCACCCCCCACCCTCGACACACACACAATAAAGAACATACTCCCATCAATGTCAATGAACCCAGTGTTATAAATTTATTGATCTAAATCATAGTTTGTCATAGATGAAGAAAGAGACTGAATAGTTTCAAGGGCCTAAAGATAATGTAGTGCATGCTTATAACAAAAAGGGTAAATGTTTAAGGCTCAATCTGGACATTGTGTCACAGAACAGGTCAAGAAGTACTTTACTTCTAATTTCTGTACTCCCATACCCCTTTTACACCCTGTACTGGATATTGATTCACTCAAGTCACATAGCTTTTTAGTTTGGGCACATACTAGCTCTGAAGTAGATTCTTGTGTGACCGTTCTCAGGATAACATCTTCTGGTCTTTTGCTTGGCTTGTAATATTTTATGAAGCTATTTTTGCTTTTATCCATTAACTTGAATGATTAGTTTGCACAATTTACATCATGGTTAATTCTACTGCAGGAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTGGTTCTTTCTCTTCATTTCCTTTATCTGTTTGTCTACCCTATGTATCTGGAAAACATACTTGTGCACACTCTCACTGAGCCACAATTTTCTATGCTGAATTTCCCCAGAAAATAAAAGCAGTCTATCTGATACTTCTACATATATGATGTTTAGCTTCTTTTAGGACACTCGCACTGAAATCTCTTGACAGCATGTGCATGTCTTATCTACTATGCATATAGTTTTAGTTTTAAAAACAAGCTTCCTGTCTACCTTGGTCATTGATATTTTGTTGCTGAAACAAAAATTTTGGCAGAGTGCTGGAACTGATTCTGCGGTCAATCTG</genome_strand>
        <mrna_strand>TTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG.......................................................................................................................................................................................................................................................................................................AGTGCTGGAACTGATTCTGCGGTCAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706311" ref_strand="+" ref_description="SGN-E706311 [FA29CE01]">
      <seq>cgctggagtgtattagagctgcagttgaaaagttgcaaaatatcaacaacacttttaagatctgcaaaaaagctctctaagctgcgattcaatgcaaggaggatcaaatggaatcggttatggcctcaaatatcaggcacgatgtatcgcctatgtgaaagctgatacggatcacaccagtttcctaaccggaactctcagcctaaaagaagaaaatgaggtacatttgatccggatttcttccgctggcactgaattgctatgcgaaggtcttttttctcatcctaatgagatctgggaccttgcgtcgtgccccttcgatcaacggattttctctactgttttttcttccggtgaaacatatggggcagcaatatggcagatccctgagttgtatggccaatcgaattctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgacaagttggttagcattgatgaacagaatcttttcctctggagctttgatacttcaaagaagaatgcacaggtacaatcacaagaatcagcaggtgtgctacattcgttaactgggggcgcctgggatccccatgattataatgctctggcactgacaagtgaatcatcagtccaactttgggatctacggacaatgaagaaaacaaattcaatcgatcatccccatgtccgtaatttggattacaatgtgaagagagagtatactcttgtaacggctgaaaatgaatctnggatacatatatgggatcttagaatgctgaagtttccagtccttgatctccctggacatactcactggacatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125019" stop="119480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124721" g_stop="124586" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124498" g_stop="124415" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="220" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124351" g_stop="124219" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="353" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123666" g_stop="123555" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="465" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122624" g_stop="122525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="565" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121791" g_stop="121664" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="693" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120931" g_stop="120862" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="763" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988">
            <donor d_prob="0.774" d_score="1.00"/>
            <acceptor a_prob="0.913" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119873" g_stop="119785" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="852" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="119571" g_stop="119562" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="862" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E706311" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124721" e_stop="124586"/>
          <exon e_start="124498" e_stop="124415"/>
          <exon e_start="124351" e_stop="124219"/>
          <exon e_start="123666" e_stop="123555"/>
          <exon e_start="122624" e_stop="122525"/>
          <exon e_start="121791" e_stop="121664"/>
          <exon e_start="120931" e_stop="120862"/>
          <exon e_start="119873" e_stop="119785"/>
          <exon e_start="119571" e_stop="119562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGGAGTGTATTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAGGTTAATCGGAAACTTTTTTTCACAATTTTCATATTTTTTTCGCTTAAACCCTAAATGATGACTGATTTAGTTCGTGATTCTGTTCAGGCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAGGTACTCCATTACTTTCATCTCCGTAATTTATCGTGAATTTCCTAGTAATGCGGCATTTTACAGGTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCGGTAAGTTTATGGTTTATTTGACTAATAAGTCTTCTTAGTTTGCTGTCTCATTTTTGTAGGATTAGAGTGAGTCGATCCGAATGCACATAATTTGTTGTTTCTTTTGTTGAATTCTTAGATGTGTTGGATTATATAGGTGGAATTTATTATCTGCACATGACAGAGTGATACTTCTCTTTGAGCTTGATCATGAGGAAATTATATATTCATTGTTTTAGAAGTTAATGTTGTCCATAGTGTGGAATGGATACAAAGGATTCATATAGTCGCAATGTCATGGTTCAGGTGTTTTGATATTTTTGATAGAAATAGTATTCATTGGTGTTTCGAGAATAGTTTAGTTCTTTTGATTTTATAGTGTTCTTTTAATCAGATCATAAGTTCAATTTATGACCTTCTCTTGTCTGTTTAAGCAAAAACTCAAGGAAGTAAAGGCATTTTAATTGCCTTACGTGAAGTTCACGAGAAGTTAGAACGGTAGTGTGGTTGGTGTTACTGATTTGATGTTTATGATGGAACTAGGTTCTATGATGATGCTCTATTCATTTGTAGGTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAGGTATATTCCAGAATATGGCTATACTTAGCTCTGGCCTTATAAAATGACCAACTAAAATGTTTCATCTTGATTTTATTTTAGTTTTCACTTCAGAAAAGTGCTGCTCGTGTTTGGTCTTCCAGTTTACATTTTTTTTGACCCATACATGCTTTATTGAGCAGTCATTTCTTTTATGCTACTGCAAGATGTATATCATTGTTTTGGAAAAGCAAAGGCACAGTAGACTATACTATGGTTGTGCATGAATGTTTACCTTCTTATAGTTTGAAAGTGCTGTGAACTGAACTTAGACTGTTAGGCATAGTAATACTCTTGTTAACACGTAAAGGGTAAAAGCTTATGAATCATTTGAAATGGCATATATGATGGCTAAAAGTCTACCGGTGCTCCTCATGGTTGGAGGTTTTAAATACTGAACTGTTTGATTACTTAAAGTAGATTTCTTGAAATAAACTTGTAATTTGCATCCCTTAGAGTGCTTCTGTTTCATCTAAAACCTAGATTTTGCTGGCTTGGAAATAATATTATCTTGATGATATTCTTTTGGTTAGCATATCTTCACACTCTTGTTTGAAATACAAGGTAGTCTGCAGTTTACCTTAGGCTTCTATGTGTCTCATCTTCGGGGATACCACCCTTCTTTGCTGCCAGAGAACCTCAAACATAGTTGTAAAAGTGTTGTTACTTCTGATTCGTGGGGCTAATTTTTATTCAGGTCTGCTGCAAAATTTAGGTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAAGTAAGTGAATATGGTAATTGATTCCCTATATTCTGTGTCATTTGTTTATGTTATTCTTTGTTCACTTGTGAATATAAGGTCAAGATAAATCATCCAAGAAAAAAAATGTAAGAAAGTACTTTGGAAGGTAAATGGCTAGTGTGGCATGGACAGTTATGTCCCTTAAGTACAAAATATACTTTGAATTTTGAAATGGGAGGCAAAAGAGAATATTTTCATGTACCTGAGATGGCTTAATCTCTAAGAGAATCCCCACCCCCACCCCCCACCCTCGACACACACACAATAAAGAACATACTCCCATCAATGTCAATGAACCCAGTGTTATAAATTTATTGATCTAAATCATAGTTTGTCATAGATGAAGAAAGAGACTGAATAGTTTCAAGGGCCTAAAGATAATGTAGTGCATGCTTATAACAAAAAGGGTAAATGTTTAAGGCTCAATCTGGACATTGTGTCACAGAACAGGTCAAGAAGTACTTTACTTCTAATTTCTGTACTCCCATACCCCTTTTACACCCTGTACTGGATATTGATTCACTCAAGTCACATAGCTTTTTAGTTTGGGCACATACTAGCTCTGAAGTAGATTCTTGTGTGACCGTTCTCAGGATAACATCTTCTGGTCTTTTGCTTGGCTTGTAATATTTTATGAAGCTATTTTTGCTTTTATCCATTAACTTGAATGATTAGTTTGCACAATTTACATCATGGTTAATTCTACTGCAGGAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTTGTAAGTACATAGCTTTGTGAAGTTATTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATGCACAATCAAATATGAAGATGATTATCCTGTGTCCTTTTAATTTTTTTCTGTCGATTAGCAATGAGCCAGTTGATGAATTTCTCTTCGTTTTTGGAATACTGCTTTTAGTTTCTTTAAAGAGAAAATAAGAAGATACCCAGTAAGACATCAAAGTGAAATATGAATAGTTAGTTGAGCTTAATGGAACTTGTTTTATCACCTCTGCATGCTTTTGGCTCTCCATTTCTTAAAGATTCAAAATAGGTACATACGGGAGAAAGTGGTACTTTTAATTTTCTCTGTGTGAGGTATTGCTATCATAACTTTACCATCTTAATTTTCAACTGTCTTATTAAAAGGTGTTCAAATTTTTTTGGTCTTGGCTTCTTTTTCTTTTCCCTTGGAGAAAGCAGGCCTTCAGTGTCAGTGAAGATGTGTTCAAATTCTGCAGGTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTGGTAATACTCTGTGGCAATAATGAAGCTGCTTGCCATCTCTTTAATTAGTTGAGTTTTTGATATAAGATTATTGTCTGGTCCTTCAATGTGTGTCTCACTATGCTGCCTACAACTTAATGACTGCTAACTTTTTTTGTTAGGGTTTAGGGTTAGAAGTTTCTTTCTGGATTACCATTTCCTTATTGAGTAAATGCAGTTGATGTTTGTTCGCAGGACATGGACT</genome_strand>
        <mrna_strand>CGCTGGAGTGTATTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG.......................................................................................GCACGATGTATCGCCTATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG...............................................................GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCTGAAAATGAATCTNGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG.....................................................................................................................................................................................................................GACATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E204513" ref_strand="+" ref_description="SGN-E204513 [cLEC-24-K12]">
      <seq>ttaagttgcattgatgattgatcccttgatttgtcgtccatttgcaaatgaaataatctgtttgagtaagtttatgaatctgtgaggtatatctgctttttgcctgtatgcatgcgtgttaacattacaatgttaggagtttgacactcaaatgtggacccatcttaggaacctttttgatattttgtactagcatttcaatttcaatatggaatgtggagaggtactcgtttgctacaagaaggaaaggataattcttttttttctttaaagcataatgtcttcaactttctactttttgtttcctcctagcaatcactttatggagatagattacatgacatgaatgtcatgacatggaaagtacttcctctaaagtgtatggctgtggccttgagtttttagtggctctatttctctatcaggcttctggtttttgctcaacgatttgttgtttatttctgaaaaagttcccatacttgtgtttttaatatgtccatctacctaaatagaagtatgttacccttaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="121136" stop="120004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120836" g_stop="120304" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E204513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120836" e_stop="120304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATG</genome_strand>
        <mrna_strand>TTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E322552" ref_strand="+" ref_description="SGN-E322552 [cTOB-26-P5]">
      <seq>ttagagctgcagttgaaaagttgcaaaatatcaacaacacttttaagatctgcaaaaaaagctctctaagctgcgattcaatgcaaggaggatcaaatggaatcggttatggcctcaaatatcaggcacgatgtatcgccgatgtgaaagctgatacggatcacaccagtttcctaaccggaactctcagcctaaaagaagaaaatgaggtacatttgatccggatttcttccgctggcactgaattgctatgcgaaggtcttttttctcatcctaatgagatctgggaccttgcgtcgtgccccttcgatcaacggattttctctactgttttttcttccggtgaaacatatggggcagcaatatggcagatccctgagttgtatggccaatcgaattctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgacaagttggttagcattgatgaacagaatcttttcctctggagctttgatacttcaaagaagaatgcacaggtacaatcacaagaatcagcaggtgtgctacattcgttaactggggggcgcctgggatccccatgattataatgctctggcactgancagtgaatcatcagtccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125009" stop="121384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124709" g_stop="124586" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124498" g_stop="124415" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="209" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124351" g_stop="124219" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="342" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123666" g_stop="123555" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="454" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122624" g_stop="122525" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="554" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121791" g_stop="121684" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="663" r_length="109" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E322552" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124709" e_stop="124586"/>
          <exon e_start="124498" e_stop="124415"/>
          <exon e_start="124351" e_stop="124219"/>
          <exon e_start="123666" e_stop="123555"/>
          <exon e_start="122624" e_stop="122525"/>
          <exon e_start="121791" e_stop="121684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGC-AAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAGGTTAATCGGAAACTTTTTTTCACAATTTTCATATTTTTTTCGCTTAAACCCTAAATGATGACTGATTTAGTTCGTGATTCTGTTCAGGCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAGGTACTCCATTACTTTCATCTCCGTAATTTATCGTGAATTTCCTAGTAATGCGGCATTTTACAGGTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCGGTAAGTTTATGGTTTATTTGACTAATAAGTCTTCTTAGTTTGCTGTCTCATTTTTGTAGGATTAGAGTGAGTCGATCCGAATGCACATAATTTGTTGTTTCTTTTGTTGAATTCTTAGATGTGTTGGATTATATAGGTGGAATTTATTATCTGCACATGACAGAGTGATACTTCTCTTTGAGCTTGATCATGAGGAAATTATATATTCATTGTTTTAGAAGTTAATGTTGTCCATAGTGTGGAATGGATACAAAGGATTCATATAGTCGCAATGTCATGGTTCAGGTGTTTTGATATTTTTGATAGAAATAGTATTCATTGGTGTTTCGAGAATAGTTTAGTTCTTTTGATTTTATAGTGTTCTTTTAATCAGATCATAAGTTCAATTTATGACCTTCTCTTGTCTGTTTAAGCAAAAACTCAAGGAAGTAAAGGCATTTTAATTGCCTTACGTGAAGTTCACGAGAAGTTAGAACGGTAGTGTGGTTGGTGTTACTGATTTGATGTTTATGATGGAACTAGGTTCTATGATGATGCTCTATTCATTTGTAGGTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAGGTATATTCCAGAATATGGCTATACTTAGCTCTGGCCTTATAAAATGACCAACTAAAATGTTTCATCTTGATTTTATTTTAGTTTTCACTTCAGAAAAGTGCTGCTCGTGTTTGGTCTTCCAGTTTACATTTTTTTTGACCCATACATGCTTTATTGAGCAGTCATTTCTTTTATGCTACTGCAAGATGTATATCATTGTTTTGGAAAAGCAAAGGCACAGTAGACTATACTATGGTTGTGCATGAATGTTTACCTTCTTATAGTTTGAAAGTGCTGTGAACTGAACTTAGACTGTTAGGCATAGTAATACTCTTGTTAACACGTAAAGGGTAAAAGCTTATGAATCATTTGAAATGGCATATATGATGGCTAAAAGTCTACCGGTGCTCCTCATGGTTGGAGGTTTTAAATACTGAACTGTTTGATTACTTAAAGTAGATTTCTTGAAATAAACTTGTAATTTGCATCCCTTAGAGTGCTTCTGTTTCATCTAAAACCTAGATTTTGCTGGCTTGGAAATAATATTATCTTGATGATATTCTTTTGGTTAGCATATCTTCACACTCTTGTTTGAAATACAAGGTAGTCTGCAGTTTACCTTAGGCTTCTATGTGTCTCATCTTCGGGGATACCACCCTTCTTTGCTGCCAGAGAACCTCAAACATAGTTGTAAAAGTGTTGTTACTTCTGATTCGTGGGGCTAATTTTTATTCAGGTCTGCTGCAAAATTTAGGTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACT-GGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTT</genome_strand>
        <mrna_strand>TTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG.......................................................................................GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG...............................................................GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGANCAGTGAATCATCAGTCCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274589" ref_strand="+" ref_description="SGN-E274589 [cLEN-11-I9]">
      <seq>agagctgcagttgaaaagttgcaaaatatcaacaacacttttaagatctgcaaaaaagctctctaagctgcgattcaatgcaaggaggatcaaatggaatcggttatggcctcaaatatcaggcacgatgtatcgccgatgtgaaagctgatacggatcacaccagtttcctaaccggaactctcagcctaaaagaagaaaatgaggtacatttgatccggatttcttccgctggcactgaattgctatgcgaaggtcttttttctcatcctaatgagatctgggaccttgcgtcgtgccccttcgatcaacggattttctctactgttttttcttccggtgaaacatatggggcagcaatatggcagatccctgagttgtatggccaatcgaattctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgacaagttggttagcattgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125007" stop="122273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124707" g_stop="124586" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124498" g_stop="124415" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="206" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124351" g_stop="124219" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="339" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123666" g_stop="123555" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="451" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122624" g_stop="122573" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="503" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E274589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124707" e_stop="124586"/>
          <exon e_start="124498" e_stop="124415"/>
          <exon e_start="124351" e_stop="124219"/>
          <exon e_start="123666" e_stop="123555"/>
          <exon e_start="122624" e_stop="122573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAGGTTAATCGGAAACTTTTTTTCACAATTTTCATATTTTTTTCGCTTAAACCCTAAATGATGACTGATTTAGTTCGTGATTCTGTTCAGGCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAGGTACTCCATTACTTTCATCTCCGTAATTTATCGTGAATTTCCTAGTAATGCGGCATTTTACAGGTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCGGTAAGTTTATGGTTTATTTGACTAATAAGTCTTCTTAGTTTGCTGTCTCATTTTTGTAGGATTAGAGTGAGTCGATCCGAATGCACATAATTTGTTGTTTCTTTTGTTGAATTCTTAGATGTGTTGGATTATATAGGTGGAATTTATTATCTGCACATGACAGAGTGATACTTCTCTTTGAGCTTGATCATGAGGAAATTATATATTCATTGTTTTAGAAGTTAATGTTGTCCATAGTGTGGAATGGATACAAAGGATTCATATAGTCGCAATGTCATGGTTCAGGTGTTTTGATATTTTTGATAGAAATAGTATTCATTGGTGTTTCGAGAATAGTTTAGTTCTTTTGATTTTATAGTGTTCTTTTAATCAGATCATAAGTTCAATTTATGACCTTCTCTTGTCTGTTTAAGCAAAAACTCAAGGAAGTAAAGGCATTTTAATTGCCTTACGTGAAGTTCACGAGAAGTTAGAACGGTAGTGTGGTTGGTGTTACTGATTTGATGTTTATGATGGAACTAGGTTCTATGATGATGCTCTATTCATTTGTAGGTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAA</genome_strand>
        <mrna_strand>AGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG.......................................................................................GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG...............................................................GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271614" ref_strand="+" ref_description="SGN-E271614 [cLEM-23-N14]">
      <seq>atagctgcagttgaaaagttgcaaaatatcaacaacacttttaagatctgcaaaaaagctctctaagctgcgattcaatgcaaggaggatcaaatggaatcggttatggcctcaaatatcaggcacgatgtatcgccgatgtgaaagctgatacggatcacaccagtttcctaaccggaactctcagcctaaaagaagaaaatgaggtacatttgatccggatttcttccgctggcactgaattgctatgcgaaggtcttttttctcatcctaatgagatctgggaccttgcgtcgtgccccttcgatcaacggattttctctactgttttttcttccggtgaaacatatggggcagcaatatggcagatccctgagttgtatggccaatcgaattctccacaactagagaggattgcatctcttgatgctcataattcgaagataaagtgcacactttggtggccaacaggaaggcatgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125007" stop="122293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124707" g_stop="124586" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124498" g_stop="124415" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="206" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124351" g_stop="124219" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="339" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123666" g_stop="123555" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="451" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930">
            <donor d_prob="0.303" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122624" g_stop="122593" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="483" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E271614" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124707" e_stop="124586"/>
          <exon e_start="124498" e_stop="124415"/>
          <exon e_start="124351" e_stop="124219"/>
          <exon e_start="123666" e_stop="123555"/>
          <exon e_start="122624" e_stop="122593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAGGTTAATCGGAAACTTTTTTTCACAATTTTCATATTTTTTTCGCTTAAACCCTAAATGATGACTGATTTAGTTCGTGATTCTGTTCAGGCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAGGTACTCCATTACTTTCATCTCCGTAATTTATCGTGAATTTCCTAGTAATGCGGCATTTTACAGGTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCGGTAAGTTTATGGTTTATTTGACTAATAAGTCTTCTTAGTTTGCTGTCTCATTTTTGTAGGATTAGAGTGAGTCGATCCGAATGCACATAATTTGTTGTTTCTTTTGTTGAATTCTTAGATGTGTTGGATTATATAGGTGGAATTTATTATCTGCACATGACAGAGTGATACTTCTCTTTGAGCTTGATCATGAGGAAATTATATATTCATTGTTTTAGAAGTTAATGTTGTCCATAGTGTGGAATGGATACAAAGGATTCATATAGTCGCAATGTCATGGTTCAGGTGTTTTGATATTTTTGATAGAAATAGTATTCATTGGTGTTTCGAGAATAGTTTAGTTCTTTTGATTTTATAGTGTTCTTTTAATCAGATCATAAGTTCAATTTATGACCTTCTCTTGTCTGTTTAAGCAAAAACTCAAGGAAGTAAAGGCATTTTAATTGCCTTACGTGAAGTTCACGAGAAGTTAGAACGGTAGTGTGGTTGGTGTTACTGATTTGATGTTTATGATGGAACTAGGTTCTATGATGATGCTCTATTCATTTGTAGGTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTGGTTAGTCTTTTTTGATATGGTAAACTCGAACTGCTTACCATAGCCCCTCAGTTCAAAAGATTTTAGATGCTTCTAGTATAAAATAAATATTAATGCTTAGGGGAAGAAATGCAGGATGCATTGTTGTGCAAAACTCTGCTTTTCTATTTTGGTCATCCTAAACTCTGCATGTTATTTAATCATTCCACTGGATGCGTACCTTGTAACTGCTAATGCTCAATATTGTAACATACCCAACCAGCAGCAAATTCCGATTTTTGGAAAAAAAGAAATTCCTATTAACATTTCCTTTGCTACTTAAGTATTCTTCTAATTCCCAATGCTACGTTAGCTCCTATGCTAAATAGTTGATGATATGGTCTTCAACTGTTACATTCATTGCTGATATTATTTCTAACACTACCCTTCGACAAAGCTAACCTAATTATCTCCAAAAATTGTGGAAGGCCATGATTCAGGAGTGCTCCAAATATATTCAAAAAATGCAGTCCTTTGATTTTAGATGGGAAATCTTAATACTTCAAAGTCATAATTGTTTTCTGTGTTCCGTTTCATGTTTATTCTCTTTTTTGTTTTGTTCTCCAAAATGAAGCAATTCAATGGTTATTGGTCTCAAGTAGCAATTCTACGGCATCATCAATTTTTTGCATAATATTTAAAGTACCTTGAGTTCTTTTAGATGGTGGTCAAGTAATTAAAATTCAATTGCCATAGATTACTAACAAATTGGTTTTCTAATTTGTGCTTGTGATGCTTTAATTAGTTAACATTTTATGATAGTTCCCTTATGGTTTATCATGCTTTAGAGGCTCATGCCTTTTGTCCTTAATTTTTCTATTAATTGGTGAGCCTGATGGAGTTACATATTAAATCGAATAATTACCTATTTTATTTGCTTGTACACTAAAATATATTGTAAATGGTGGGCAGCACACTTTGGTGGCCAACAGGAAGGCATGACA</genome_strand>
        <mrna_strand>ATAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG.......................................................................................GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG...............................................................GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTTTGGTGGCCAACAGGAAGGCATGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275359" ref_strand="+" ref_description="SGN-E275359 [cLEN-10-M21]">
      <seq>aaaaaagctctctaagctgcgattcaatgcaaggaggatcaaatggaatcggttagtggcctcaaatatcaggcacgatgtatcgccgatgtgaaagctgatacggatcacaccaatttcctaaccggaactctcagcctaaaagaagaaaatgaggtacatttgatccggatttcttccgctggcactgaattgctatgcgaaggtcgtttttttctcatcctaatgagatctgggaccttgcattcgtgccccttcgatcaacggattgttctctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="124956" stop="123932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124656" g_stop="124586" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124498" g_stop="124415" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="156" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124351" g_stop="124232" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="280" r_length="124" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E275359" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124656" e_stop="124586"/>
          <exon e_start="124498" e_stop="124415"/>
          <exon e_start="124351" e_stop="124232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTA-TGGCCTCAAATATCAGGTTAATCGGAAACTTTTTTTCACAATTTTCATATTTTTTTCGCTTAAACCCTAAATGATGACTGATTTAGTTCGTGATTCTGTTCAGGCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAGGTACTCCATTACTTTCATCTCCGTAATTTATCGTGAATTTCCTAGTAATGCGGCATTTTACAGGTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTC--TTTTTTCTCATCCTAATGAGATCTGGGACCTTGC-GTCGTGCCCCTTCGATCAACGGATT-TTCTCTACT</genome_strand>
        <mrna_strand>AAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTAGTGGCCTCAAATATCAG.......................................................................................GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAATTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG...............................................................GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCGTTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCATTCGTGCCCCTTCGATCAACGGATTGTTCTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319336" ref_strand="+" ref_description="SGN-E319336 [cTOB-15-E13]">
      <seq>gataatagggttttagcgaggaagagaaacaaaattcacgtaaaacaatccaaaagaaacacaattgataatgtcctcgctgacgttgaaaccaacgtttctgttacaggcatatggttcttcgtcttcgtcgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacaacgaaaacgataccaaacctccaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125410" stop="126514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125710" g_stop="125986" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126214" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="366" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E319336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125710" e_stop="125986"/>
          <exon e_start="126126" e_stop="126214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACA</genome_strand>
        <mrna_strand>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E395697" ref_strand="+" ref_description="SGN-E395697 [TUS-17-K20]">
      <seq>agggttttagcgaggaagagaaacaaaattcacgtaaaacaatccaaaagaaacacaattgataatgtcctcgctgacgttgaaaccaacgtttctgttacaggcatatggttcttcgtcttcgtcgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacaacgaaaacgataccaaacctccaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaatttttcgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaaggattcaccagattatgcatctggtacccagaaaaaggtgactggagaagtcataaggtggaataatgttacaggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125416" stop="128301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125716" g_stop="125986" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="361" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126457" g_stop="126537" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="442" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="574" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127926" g_stop="128001" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="650" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E395697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125716" e_stop="125986"/>
          <exon e_start="126126" e_stop="126215"/>
          <exon e_start="126457" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
          <exon e_start="127926" e_stop="128001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAGGTAAGTTCTCTCTAGTGTGTGCTATTTCCGACTAATTGATTTTGTTGTCATTTCCTGGGACTGGATGAATTACTCTTTTTATGCCAATTAATGTAGCATTTTCAGTTTAGATAGTTATCTTCAGCCTGTCTTGGTTGTTTTGGAGTTGCTCATGCCTTTCCATCGAGTAGAAACTTCTTAGCATCACTTGGAAGATAAAAGACATTTAACACTAAATAGTAAAAAGACAAAACAGGAAAATGAAAGTTTAAAGACATTTCTCTCTACAGATCATCCATTGTCTTATTTTAGGTAGGCAATTTGCTGTGCTAATGCAAGAGATGCAAGGCAAAATGATATCAATCTGTTCGTAAAGCTATTTCTGGTTTCTCTTACTTTTCAATATAAGTTTTGGAATAGGAAATTTCTTTTGAGTTTAAAGATCACAATTTCACTAATAGAATTGTGACTGAATTATTGGAAAAGGTTGTATTAGCCTTTTAGCTTTCAAACCTATTCATAAGAGGCTTTCAGTTTGTCCCTGCATCTATGTTTTGCTTATTTATTGTATTTACCTCTTTTTTTCCATTATGCTGATGGAAGATAGAGTATTACATTCCTTATTCCTTTTTTATTTTGTTCTAAACTCAAGCGAATCAAGTCAAGAATAACTTTTTGGGTATTGAATATGTTTTAGAATCGACTTTCACTTTTCACATGTCCTTTAACCAGGCTTCCCTTTCAGTTTTTCACCTTATTTTCGGGACCGTTAAATCCTTGAGAGTGGTTGCTACTTGCAGAGTTACTCAAAACAAATGCTGTTGAAGCTATAGTTCCTGGGAATTATTATATCATACTATCGACTTGATGTTCTCAATGAGATCATGGTCTTACTGGTGATTTTACATTCATGACTTCTTACAATTGCTATCATGTTGTCTCAAGTATCCATTGCACAAATGCCCTTCTTTTAAAAAGACAATAATACTGCTTTCTTTTCTTTCCCTCTTTTTAGTTTTGGTTCATCTGAAGATGCGTACCGTTTGCTTGATATGTGAAGTTCATTCTGCCATTGTTAGATCTTCTACTTGAATCCCTGTTCTCACAAAGTAAATATTTCTGAGGAGTAACTATCACTCGTTTGACTGTTCAGGATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTC</genome_strand>
        <mrna_strand>AGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E210494" ref_strand="+" ref_description="SGN-E210494 [cLEC-35-O24]">
      <seq>gggttttagcgaggaagagaaacaaaattcacgtaaaacaatccaaaagaaacacaattgataatgtcctcgctgacgttgaaaccaacgtttctgttacaggcatatggttcttcgtcttcgtcgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacagcgaaaacgataccaaaccttcaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgcgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaattttacgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125417" stop="127093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125717" g_stop="125986" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="270" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="360" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126457" g_stop="126537" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="441" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="573" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E210494" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125717" e_stop="125986"/>
          <exon e_start="126126" e_stop="126215"/>
          <exon e_start="126457" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG</genome_strand>
        <mrna_strand>GGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAGCGAAAACGATACCAAACCTTCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGCGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTACGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304325" ref_strand="+" ref_description="SGN-E304325 [cLEX-12-G18]">
      <seq>aagaaacacaattgataatgtcctcgctgacgttgaaaccaacgtttctgttacaggcatatggttcttcgtcttcgtcgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacaacgaaaacgataccaaacctccaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaatttttcgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaaggattcaccagattatgcatctggtacccagaaaaaggtgactggagaagtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125463" stop="128279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125763" g_stop="125986" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="314" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126457" g_stop="126537" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="395" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="527" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127926" g_stop="127979" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="581" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E304325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125763" e_stop="125986"/>
          <exon e_start="126126" e_stop="126215"/>
          <exon e_start="126457" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
          <exon e_start="127926" e_stop="127979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAGGTAAGTTCTCTCTAGTGTGTGCTATTTCCGACTAATTGATTTTGTTGTCATTTCCTGGGACTGGATGAATTACTCTTTTTATGCCAATTAATGTAGCATTTTCAGTTTAGATAGTTATCTTCAGCCTGTCTTGGTTGTTTTGGAGTTGCTCATGCCTTTCCATCGAGTAGAAACTTCTTAGCATCACTTGGAAGATAAAAGACATTTAACACTAAATAGTAAAAAGACAAAACAGGAAAATGAAAGTTTAAAGACATTTCTCTCTACAGATCATCCATTGTCTTATTTTAGGTAGGCAATTTGCTGTGCTAATGCAAGAGATGCAAGGCAAAATGATATCAATCTGTTCGTAAAGCTATTTCTGGTTTCTCTTACTTTTCAATATAAGTTTTGGAATAGGAAATTTCTTTTGAGTTTAAAGATCACAATTTCACTAATAGAATTGTGACTGAATTATTGGAAAAGGTTGTATTAGCCTTTTAGCTTTCAAACCTATTCATAAGAGGCTTTCAGTTTGTCCCTGCATCTATGTTTTGCTTATTTATTGTATTTACCTCTTTTTTTCCATTATGCTGATGGAAGATAGAGTATTACATTCCTTATTCCTTTTTTATTTTGTTCTAAACTCAAGCGAATCAAGTCAAGAATAACTTTTTGGGTATTGAATATGTTTTAGAATCGACTTTCACTTTTCACATGTCCTTTAACCAGGCTTCCCTTTCAGTTTTTCACCTTATTTTCGGGACCGTTAAATCCTTGAGAGTGGTTGCTACTTGCAGAGTTACTCAAAACAAATGCTGTTGAAGCTATAGTTCCTGGGAATTATTATATCATACTATCGACTTGATGTTCTCAATGAGATCATGGTCTTACTGGTGATTTTACATTCATGACTTCTTACAATTGCTATCATGTTGTCTCAAGTATCCATTGCACAAATGCCCTTCTTTTAAAAAGACAATAATACTGCTTTCTTTTCTTTCCCTCTTTTTAGTTTTGGTTCATCTGAAGATGCGTACCGTTTGCTTGATATGTGAAGTTCATTCTGCCATTGTTAGATCTTCTACTTGAATCCCTGTTCTCACAAAGTAAATATTTCTGAGGAGTAACTATCACTCGTTTGACTGTTCAGGATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATA</genome_strand>
        <mrna_strand>AAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311948" ref_strand="+" ref_description="SGN-E311948 [cTOA-16-M15]">
      <seq>aacgtttctgttacaggcatatggggcttcgtcttcgccgtctgccggaagtcgacggctttgttctctgattagcttccagaagaaaacatttcgcaaacaaaaattcactctgagagctcaatccctcgattcaccgcaaaataacaacgaaaacgataccaaacctccaaatggctctatgcacaaaagcagaagggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125503" stop="126816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125803" g_stop="125986" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.737" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126126" g_stop="126215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="274" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126457" g_stop="126516" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="334" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E311948" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125803" e_stop="125986"/>
          <exon e_start="126126" e_stop="126215"/>
          <exon e_start="126457" e_stop="126516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATGGTACTCAGTTTTTTTTCAGTGTTTGTATTGTTGTATTCATCTACCGTTTATATATAATTTTGAAATGTTAGTTCAATATTGTGACTTAAGTGTTGGAGAGCAGGTAGAAAGATTTCAATTTTAGTAAATGTTATTGCAGCACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTT</genome_strand>
        <mrna_strand>AACGTTTCTGTTACAGGCATATGGGGCTTCGTCTTCGCCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG...........................................................................................................................................CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253177" ref_strand="+" ref_description="SGN-E253177 [cLEG-26-G14]">
      <seq>cagaaaggaaattctactggagtatgtgcaaaatgtacaaccggaattcatggagttgtttgtgaaaaaagcaccacaacaggtagttgaggcaatgcgccaaacagtgacaaacatgattggaacattacctccacaatttttcgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaaggattcaccagattatgcatctggtacccagaaaaaggtgactggagaagtcataaggtggaataatgttacaggtcctgaaaaaatagacgcgttgaagtatatcgagttacttgaagcagaagtggaggaattgaatcgtcaaatggaaaggaaatctggtaatggttataatgagctgttggaatatctaaagactcttgagcctcaaaatatcaaggagctaaccagtacagctggagaagatgttgtgctcgccatgaattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="125834" stop="128804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126134" g_stop="126215" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126457" g_stop="126537" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="163" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="295" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127926" g_stop="128144" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="514" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="128456" g_stop="128504" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="563" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E253177" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126134" e_stop="126215"/>
          <exon e_start="126457" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
          <exon e_start="127926" e_stop="128144"/>
          <exon e_start="128456" e_stop="128504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAGGTATTAGCAATAAAGTTTCGTACTTTGAAGATGTTTGTGCTTTTTTGGTTGATAGAACAGACATAATTGGCGCAAATAAGAGTGGAACGGTTATAGAGGAACTTGACTGATTTGAGATTGAGGCATAGTTTTTCTTTTTGTTGTTTAGTGCATGTAACTGAAACAGCTTAGACAACTTGAAATTCCTTTGAAATTCAAGGTACTAATGTAAACATATCCTGATCATTGATACCTGTGCTAGGTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAGGTAAGTTCTCTCTAGTGTGTGCTATTTCCGACTAATTGATTTTGTTGTCATTTCCTGGGACTGGATGAATTACTCTTTTTATGCCAATTAATGTAGCATTTTCAGTTTAGATAGTTATCTTCAGCCTGTCTTGGTTGTTTTGGAGTTGCTCATGCCTTTCCATCGAGTAGAAACTTCTTAGCATCACTTGGAAGATAAAAGACATTTAACACTAAATAGTAAAAAGACAAAACAGGAAAATGAAAGTTTAAAGACATTTCTCTCTACAGATCATCCATTGTCTTATTTTAGGTAGGCAATTTGCTGTGCTAATGCAAGAGATGCAAGGCAAAATGATATCAATCTGTTCGTAAAGCTATTTCTGGTTTCTCTTACTTTTCAATATAAGTTTTGGAATAGGAAATTTCTTTTGAGTTTAAAGATCACAATTTCACTAATAGAATTGTGACTGAATTATTGGAAAAGGTTGTATTAGCCTTTTAGCTTTCAAACCTATTCATAAGAGGCTTTCAGTTTGTCCCTGCATCTATGTTTTGCTTATTTATTGTATTTACCTCTTTTTTTCCATTATGCTGATGGAAGATAGAGTATTACATTCCTTATTCCTTTTTTATTTTGTTCTAAACTCAAGCGAATCAAGTCAAGAATAACTTTTTGGGTATTGAATATGTTTTAGAATCGACTTTCACTTTTCACATGTCCTTTAACCAGGCTTCCCTTTCAGTTTTTCACCTTATTTTCGGGACCGTTAAATCCTTGAGAGTGGTTGCTACTTGCAGAGTTACTCAAAACAAATGCTGTTGAAGCTATAGTTCCTGGGAATTATTATATCATACTATCGACTTGATGTTCTCAATGAGATCATGGTCTTACTGGTGATTTTACATTCATGACTTCTTACAATTGCTATCATGTTGTCTCAAGTATCCATTGCACAAATGCCCTTCTTTTAAAAAGACAATAATACTGCTTTCTTTTCTTTCCCTCTTTTTAGTTTTGGTTCATCTGAAGATGCGTACCGTTTGCTTGATATGTGAAGTTCATTCTGCCATTGTTAGATCTTCTACTTGAATCCCTGTTCTCACAAAGTAAATATTTCTGAGGAGTAACTATCACTCGTTTGACTGTTCAGGATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAGGTTAGCATGCTTGCTGCTTGAATTGGGGGAGGGTATTTGAACATTCTAAGATGGTTAATGTAGGTGGGAGGGTATTTGTACATTCCAGGATGCTTTAGCGTAAGTAGTTATTGCTTAAATGGTGTTTCTTTTTGTATTGGTATTCTGATTTTACATGACCACTATAGATGAGGAATACCTATTTTACAAATCTTGAAGTGCATGGATAGACAAGATATAACCTAGTAATTGAGTGCGTACTTATTTATATATAATTGTTAATTCTTAATGGAGAAGGTTATTCATTTTTATTCTACTCTGACATTTTGCAGGAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTT</genome_strand>
        <mrna_strand>CAGAAAGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG.................................................................................................................................................................................................................................................GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG.......................................................................................................................................................................................................................................................................................................................GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284884" ref_strand="+" ref_description="SGN-E284884 [cLER-19-H1]">
      <seq>aatttttcgccattactgtaaccacggtcgctgaaaatcttgctcagcttatgtatagtgtcttgatgactggatatatgtttaggaatgctcaatttcggttagaactgcaacaaagtctggaacaggctgcccttcctgaagcacaggaagaaaaggattcaccagattatgcatctggtacccagaaaaaggtgactggagaagtcataaggtggaataatgttacaggtcctgaaaaaatagacgcgttgaagtatatcgagttacttgaagcagaagtggaggaattgaatcgtcaaatggaaaggaaatctggtaatggttataatgagctgttggaatatctaaagactcttgagcctcaaaatatcaaggagctaaccagtacagctggagaagatgttgtgctcgccatgaattctttcattaagcgtctcttagctgtttcagatcctagtcaaatgaagactagtgtaacagagacaagtgccccagaacttgccaaacttctttattggctcatggtggttggttatagcatccggaatattgaaggccgctttgatatggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="126212" stop="129473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126512" g_stop="126537" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126662" g_stop="126793" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="158" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="127926" g_stop="128144" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="377" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128456" g_stop="128548" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="470" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129068" g_stop="129173" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="576" r_length="106" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E284884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126512" e_stop="126537"/>
          <exon e_start="126662" e_stop="126793"/>
          <exon e_start="127926" e_stop="128144"/>
          <exon e_start="128456" e_stop="128548"/>
          <exon e_start="129068" e_stop="129173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCGCCATTACTGTAACCACGGTAAGTGGCTATGATCTCAATGCTTGCAAGCTGTGATATATGAGATGAGACATTCTTTGATTAAGGACGTATATGTCATCTCTGGAGCTGATGATGATTTTGGGTGATGTTGACTTTTACTTAGGTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAGGTAAGTTCTCTCTAGTGTGTGCTATTTCCGACTAATTGATTTTGTTGTCATTTCCTGGGACTGGATGAATTACTCTTTTTATGCCAATTAATGTAGCATTTTCAGTTTAGATAGTTATCTTCAGCCTGTCTTGGTTGTTTTGGAGTTGCTCATGCCTTTCCATCGAGTAGAAACTTCTTAGCATCACTTGGAAGATAAAAGACATTTAACACTAAATAGTAAAAAGACAAAACAGGAAAATGAAAGTTTAAAGACATTTCTCTCTACAGATCATCCATTGTCTTATTTTAGGTAGGCAATTTGCTGTGCTAATGCAAGAGATGCAAGGCAAAATGATATCAATCTGTTCGTAAAGCTATTTCTGGTTTCTCTTACTTTTCAATATAAGTTTTGGAATAGGAAATTTCTTTTGAGTTTAAAGATCACAATTTCACTAATAGAATTGTGACTGAATTATTGGAAAAGGTTGTATTAGCCTTTTAGCTTTCAAACCTATTCATAAGAGGCTTTCAGTTTGTCCCTGCATCTATGTTTTGCTTATTTATTGTATTTACCTCTTTTTTTCCATTATGCTGATGGAAGATAGAGTATTACATTCCTTATTCCTTTTTTATTTTGTTCTAAACTCAAGCGAATCAAGTCAAGAATAACTTTTTGGGTATTGAATATGTTTTAGAATCGACTTTCACTTTTCACATGTCCTTTAACCAGGCTTCCCTTTCAGTTTTTCACCTTATTTTCGGGACCGTTAAATCCTTGAGAGTGGTTGCTACTTGCAGAGTTACTCAAAACAAATGCTGTTGAAGCTATAGTTCCTGGGAATTATTATATCATACTATCGACTTGATGTTCTCAATGAGATCATGGTCTTACTGGTGATTTTACATTCATGACTTCTTACAATTGCTATCATGTTGTCTCAAGTATCCATTGCACAAATGCCCTTCTTTTAAAAAGACAATAATACTGCTTTCTTTTCTTTCCCTCTTTTTAGTTTTGGTTCATCTGAAGATGCGTACCGTTTGCTTGATATGTGAAGTTCATTCTGCCATTGTTAGATCTTCTACTTGAATCCCTGTTCTCACAAAGTAAATATTTCTGAGGAGTAACTATCACTCGTTTGACTGTTCAGGATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAGGTTAGCATGCTTGCTGCTTGAATTGGGGGAGGGTATTTGAACATTCTAAGATGGTTAATGTAGGTGGGAGGGTATTTGTACATTCCAGGATGCTTTAGCGTAAGTAGTTATTGCTTAAATGGTGTTTCTTTTTGTATTGGTATTCTGATTTTACATGACCACTATAGATGAGGAATACCTATTTTACAAATCTTGAAGTGCATGGATAGACAAGATATAACCTAGTAATTGAGTGCGTACTTATTTATATATAATTGTTAATTCTTAATGGAGAAGGTTATTCATTTTTATTCTACTCTGACATTTTGCAGGAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAGGTATAACATTTTTATTGGAACTTATTTTATGGTGTATGTATTTGTGATACTGCTTCTTTCACTTTTATAAAAGAAATATCAGTTGCACTGGTCATGTCATGATTCATTTCTGGTAAGTTTCTAAAATCATTCAGGCAGGCATGGCTTGTGTACATGTAAAGGATGTTGAAATATCACTTAAAAAACAAAAATATTTAGTTTTCACTAATCAATATGATTAACTTGTGTGTCCTTAGATCTTCTAGTATGAAGGGTGTGTTCAAAACTTCTCTCTCCATGTGCCTATTTTGACCAAAGCAGATTAGTTATCAACTATTGAGACTTATAAATCATGGGATCCTACAAAGAAGTGTCAAAATCTAATTAACAAACATTCTCTTTAAGACTTTGTGAAATAAGACGAACGTATTAATTATGTCTCTAATAATAAGATAGCAAAGCCTGCAAAACCTAAGTATATGCAAATGTAGACATAACAGTTTGTTGTATGCTCATCTTTTTCTTTGATATGGAATGCAGACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAAC</genome_strand>
        <mrna_strand>AATTTTTCGCCATTACTGTAACCACG............................................................................................................................GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG.......................................................................................................................................................................................................................................................................................................................GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGGCCGCTTTGATATGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306603" ref_strand="-" ref_description="SGN-E306603 [cLEY-19-C13]">
      <seq>tcagatcctagtcaaatgaagactagtgtaacagagacaagtgccccagaacttgccaaacttctttattggctcatggtggttggttatagcatccggaatattgaagtccgctttgatatggaacgggtactaggcacttctccaaagctcgctgagctgcctcctggtgaaaatatttaggcatctctggaaagtgtctaatctatagcaagcattaaaacgttgaagcaacatacatttttcatgagctttacgatggtcaatagtaaaattttatcaagcttgtacgactatctgggaggacaacagtggaaattggttttagtgcattttcttcactcactcccagccccgctccccctattattctcagtttgggagcatcattaagacgctcatacaaaggaaatgtactataaattgatgcacaatgtaacttatgtgagttaatttgattcattgccctctaaaatgtacctctctgtttatgggaatgagaaattttgtggcttagatctccaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="+" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="128228" stop="129871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128528" g_stop="128548" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129068" g_stop="129570" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="524" r_length="503" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="525" polyA_stop="543"/>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="+" ref_id="SGN-E306603" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306603" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="128528" e_stop="128548"/>
          <exon e_start="129068" e_stop="129570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATCCTAGTCAAATGAAGGTATAACATTTTTATTGGAACTTATTTTATGGTGTATGTATTTGTGATACTGCTTCTTTCACTTTTATAAAAGAAATATCAGTTGCACTGGTCATGTCATGATTCATTTCTGGTAAGTTTCTAAAATCATTCAGGCAGGCATGGCTTGTGTACATGTAAAGGATGTTGAAATATCACTTAAAAAACAAAAATATTTAGTTTTCACTAATCAATATGATTAACTTGTGTGTCCTTAGATCTTCTAGTATGAAGGGTGTGTTCAAAACTTCTCTCTCCATGTGCCTATTTTGACCAAAGCAGATTAGTTATCAACTATTGAGACTTATAAATCATGGGATCCTACAAAGAAGTGTCAAAATCTAATTAACAAACATTCTCTTTAAGACTTTGTGAAATAAGACGAACGTATTAATTATGTCTCTAATAATAAGATAGCAAAGCCTGCAAAACCTAAGTATATGCAAATGTAGACATAACAGTTTGTTGTATGCTCATCTTTTTCTTTGATATGGAATGCAGACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</genome_strand>
        <mrna_strand>TCAGATCCTAGTCAAATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215863" ref_strand="+" ref_description="SGN-E215863 [cLEL-15-M21](-)">
      <seq>ggcaccagagcagaaaaaatgttgagaaaattctgattgcaaaataatctagtgttagtaggatctgactgatccattcattttgttgtaccaacaggtagtgtacattattgttcaacagccaataattacctcttgccaaaaattgactaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0096K04-7qdtT/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0096K04.1" temp_strand="-" temp_description="C04SLm0096K04.1  CU041361.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0096K04 sequenced_by:sanger upload_account_name:uk">
        <position start="130364" stop="74030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130072" g_stop="129921" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="129920" i_stop="129845" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.470" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129844" g_stop="129826" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="171" r_length="19" r_score="0.474"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0096K04.1" gen_strand="-" ref_id="SGN-E215863" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0096K04.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130072" e_stop="129921"/>
          <exon e_start="129844" e_stop="129826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTCAGCAGAAAAAATGTTGAGAAAATTCTGATTGCAAAATAATCTAGTGTTAGTAGGATCTGACTGATCCATTCATTTTGTTGTACCAACAGGTAGTGTACATTATTGTTCAACAGCCAATAATTACCTCTTGCCAAAAATTGACTAGTCTTTTTATGCCAAAATGTTTGCTACTCTGTAGCATTAATTATTTGTCAGTTCCACACTTGCTCATATGAATTAGTTACTCAAAGAGGATATAA</genome_strand>
        <mrna_strand>GGCACCAGAGCAGAAAAAATGTTGAGAAAATTCTGATTGCAAAATAATCTAGTGTTAGTAGGATCTGACTGATCCATTCATTTTGTTGTACCAACAGGTAGTGTACATTATTGTTCAACAGCCAATAATTACCTCTTGCCAAAAATTGACTA............................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>314</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="10247" PGL_stop="12734"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10795" e_stop="11515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10795" e_stop="11515" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10795" stop="11381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10800" stop="11515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGGGCTTCATTTGCAGGTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAGGTATTTCAGATATTCGTTCAAAGGATTTAACTTATATATACGCTAATAGTCTTGTTTTATCTGTTGTAATAGGTAACATTGGATGTTTTGCAGGTTACGCATTCATGTTTGCAATAAAATTTACCTGTAGTTGTCTTTTAGGTGACCTAAAAGTGAATAAAATAAAATTAGGTTCAATATGTCTATTTTTGCTTTTGTTGCATTCTAGTTAGTGGCGGGGAGTCAAGATTTTTACCAAGGGCATTCAAAATCTTAAAATACAGGGGATCATAGAAACCCGACACCTGTATACTGGTATGAGGTAGCAAGTACATCGTGAAATT</gDNA_template>
            <first_frame> R  G  F  I  C  R  Y  S  C  Q  V  K  M  V  S  R  Y  L  C  S  *  C  L  E  R  V  F  L  L  M  D  A  T  L  V  Y  Y  T  D  T  E  D  S  M  L  V  L  H  H  I  F  L  L  L  A  L  C  S  R  N  I  *  V  L  C  F  A  *  Q  I  F  V  V  A  E  N  M  E  K  S  G  I  K  V  V  L  L  T  K  S  K  I  A  L  M  T  L  F  L  L  L  S  I  L  Y  V  L  V  I  H  S  H  I  S  C  V  L  K  V  E  A  M  V  D  F  L  L  E  P  V  *  I  R  Y  F  R  Y  S  F  K  G  F  N  L  Y  I  R  *  *  S  C  F  I  C  C  N  R  *  H  W  M  F  C  R  L  R  I  H  V  C  N  K  I  Y  L  *  L  S  F  R  *  P  K  S  E  *  N  K  I  R  F  N  M  S  I  F  A  F  V  A  F  *  L  V  A  G  S  Q  D  F  Y  Q  G  H  S  K  S  *  N  T  G  D  H  R  N  P  T  P  V  Y  W  Y  E  V  A  S  T  S  *  N  </first_frame>
            <second_frame>  G  A  S  F  A  G  I  R  A  K  *  R  W  C  Q  D  T  Y  V  H  S  V  *  K  G  Y  F  S  *  W  M  Q  P  L  F  I  I  R  I  R  R  I  Q  C  *  Y  Y  T  T  F  F  C  C  S  R  C  A  R  E  T  F  R  C  C  V  L  H  S  K  Y  S  W  W  R  R  I  W  R  R  V  V  *  R  W  C  S  *  Q  K  A  K  L  L  *  *  L  Y  F  C  C  *  V  S  C  M  C  W  L  Y  T  A  T  *  V  V  Y  *  R  W  K  Q  W  W  T  S  C  W  S  L  C  K  S  G  I  S  D  I  R  S  K  D  L  T  Y  I  Y  A  N  S  L  V  L  S  V  V  I  G  N  I  G  C  F  A  G  Y  A  F  M  F  A  I  K  F  T  C  S  C  L  L  G  D  L  K  V  N  K  I  K  L  G  S  I  C  L  F  L  L  L  L  H  S  S  *  W  R  G  V  K  I  F  T  K  G  I  Q  N  L  K  I  Q  G  I  I  E  T  R  H  L  Y  T  G  M  R  *  Q  V  H  R  E  I </second_frame>
            <third_frame>   G  L  H  L  Q  V  F  V  P  S  K  D  G  V  K  I  P  M  F  I  V  S  R  K  G  I  S  L  D  G  C  N  P  C  L  L  Y  G  Y  G  G  F  N  V  S  I  T  P  H  F  S  A  A  R  V  V  L  A  K  H  L  G  V  V  F  C  I  A  N  I  R  G  G  G  E  Y  G  E  E  W  Y  K  G  G  A  L  N  K  K  Q  N  C  F  D  D  F  I  S  A  A  E  Y  L  V  C  A  G  Y  T  Q  P  H  K  L  C  I  E  G  G  S  N  G  G  L  L  V  G  A  C  V  N  Q  V  F  Q  I  F  V  Q  R  I  *  L  I  Y  T  L  I  V  L  F  Y  L  L  *  *  V  T  L  D  V  L  Q  V  T  H  S  C  L  Q  *  N  L  P  V  V  V  F  *  V  T  *  K  *  I  K  *  N  *  V  Q  Y  V  Y  F  C  F  C  C  I  L  V  S  G  G  E  S  R  F  L  P  R  A  F  K  I  L  K  Y  R  G  S  *  K  P  D  T  C  I  L  V  *  G  S  K  Y  I  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10797" stop="11222"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLHLQVFVPSKDGVKIPMFIVSRKGISLDGCNPCLLYGYGGFNVSITPHFSAARVVLAKHLGVVFCIANIRGGGEYGEEWYKGGALNKKQNCFDDFISAAEYLVCAGYTQPHKLCIEGGSNGGLLVGACVNQVFQIFVQRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10247" e_stop="10421"/>
            <exon e_start="10812" e_stop="11192"/>
            <exon e_start="11700" e_stop="11775"/>
            <exon e_start="11877" e_stop="11940"/>
            <exon e_start="12064" e_stop="12202"/>
            <exon e_start="12297" e_stop="12410"/>
            <exon e_start="12556" e_stop="12734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.460" e_score="0.997"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.844" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.300" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.776" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10247" e_stop="10421" e_length="175"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.958">
            <gDNA_intron_boundary i_start="10422" i_stop="10811" i_length="390"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="10812" e_stop="11192" e_length="381"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.460">
            <gDNA_intron_boundary i_start="11193" i_stop="11699" i_length="507"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11700" e_stop="11775" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="11776" i_stop="11876" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11877" e_stop="11940" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.844">
            <gDNA_intron_boundary i_start="11941" i_stop="12063" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12064" e_stop="12202" e_length="139"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.300">
            <gDNA_intron_boundary i_start="12203" i_stop="12296" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12297" e_stop="12410" e_length="114"/>
          </exon>
          <intron i_serial="6" don_prob="0.909" acc_prob="0.776">
            <gDNA_intron_boundary i_start="12411" i_stop="12555" i_length="145"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12556" e_stop="12734" e_length="179"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10247" stop="10421"/>
              <exon start="10812" stop="11192"/>
              <exon start="11700" stop="11732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11121" stop="11192"/>
              <exon start="11700" stop="11775"/>
              <exon start="11877" stop="11940"/>
              <exon start="12064" stop="12202"/>
              <exon start="12297" stop="12410"/>
              <exon start="12556" stop="12734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTCGGGGATTTCAGCTCGTCGAAAAGATGATTCCATTTTTATTGGATTCATGAACTTCTTGATCCCTGGATTGATATATCAGTGTAATCTCAAAGGTGAAGTTCCTGACCTTAAAGTATTTCGAGAAATCGTCGTGCCTGGATTTGATCGGACGGAGTTTCAAGTTAATCAG : GTATTCGTGCCAAGTAAAGATGGTGTCAAGATACCTATGTTCATAGTGTCTAGAAAGGGTATTTCTCTTGATGGATGCAACCCTTGTTTATTATACGGATACGGAGGATTCAATGTTAGTATTACACCACATTTTTCTGCTGCTCGCGTTGTGCTCGCGAAACATTTAGGTGTTGTGTTTTGCATAGCAAATATTCGTGGTGGCGGAGAATATGGAGAAGAGTGGTATAAAGGTGGTGCTCTTAACAAAAAGCAAAATTGCTTTGATGACTTTATTTCTGCTGCTGAGTATCTTGTATGTGCTGGTTATACACAGCCACATAAGTTGTGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGAGCCTGTGTAAATCAG : AGACCTGATCTCTTTGGCTGTGCTCTTGCTCATGTTGGTGTTATGGATATGCTTAGATTCCACAAATTCACTATAG : GCCATGCATGGACCTCTGATTTTGGTTGTTCTGATAAGGAGGAAGAATTTCAGTGGCTAATCAA : GTATTCACCACTGCATAATGTGAGTAGGCCATGGGAAAAATCTGTCAATTTAGCATTTGTTCAATACCCTTCCATCATGCTATTGACTGCAGATCATGATGATAGAGTTGTTCCACTGCACTCATTGAAACTATTGGCT : ACCATGCAATACGTCCTGTGCACGAGCCAGGAGGGAAGTCCCCAGACCAACCCTATCGTTGGTAGGATCGAACGTAAGGCTGGTCATGGATGTGGACGTCCAACACAAAAACTC : ATTGATGAAGCTGCAGACAGATATGCATTCATGGCTAAAGAGTTGGGTGCTGCTTGGGTTGAGTAAAATTATGTTTGTACAAAGGTATAATATGGAAAATAGTGGAACACAAATAAGGTGGTCGGATTTTGATGTCCTCACAGTTGGTGCTTCATCATCCAATAAAAGGTATCTGCTTG</gDNA_template>
            <first_frame> S  F  G  D  F  S  S  S  K  R  *  F  H  F  Y  W  I  H  E  L  L  D  P  W  I  D  I  S  V  *  S  Q  R  *  S  S  *  P  *  S  I  S  R  N  R  R  A  W  I  *  S  D  G  V  S  S  *  S   : G  I  R  A  K  *  R  W  C  Q  D  T  Y  V  H  S  V  *  K  G  Y  F  S  *  W  M  Q  P  L  F  I  I  R  I  R  R  I  Q  C  *  Y  Y  T  T  F  F  C  C  S  R  C  A  R  E  T  F  R  C  C  V  L  H  S  K  Y  S  W  W  R  R  I  W  R  R  V  V  *  R  W  C  S  *  Q  K  A  K  L  L  *  *  L  Y  F  C  C  *  V  S  C  M  C  W  L  Y  T  A  T  *  V  V  Y  *  R  W  K  Q  W  W  T  S  C  W  S  L  C  K  S   : E  T  *  S  L  W  L  C  S  C  S  C  W  C  Y  G  Y  A  *  I  P  Q  I  H  Y  R :   P  C  M  D  L  *  F  W  L  F  *  *  G  G  R  I  S  V  A  N  Q  :  V  F  T  T  A  *  C  E  *  A  M  G  K  I  C  Q  F  S  I  C  S  I  P  F  H  H  A  I  D  C  R  S  *  *  *  S  C  S  T  A  L  I  E  T  I  G   : Y  H  A  I  R  P  V  H  E  P  G  G  K  S  P  D  Q  P  Y  R  W  *  D  R  T  *  G  W  S  W  M  W  T  S  N  T  K  T   : H  *  *  S  C  R  Q  I  C  I  H  G  *  R  V  G  C  C  L  G  *  V  K  L  C  L  Y  K  G  I  I  W  K  I  V  E  H  K  *  G  G  R  I  L  M  S  S  Q  L  V  L  H  H  P  I  K  G  I  C  L </first_frame>
            <second_frame>  V  S  G  I  S  A  R  R  K  D  D  S  I  F  I  G  F  M  N  F  L  I  P  G  L  I  Y  Q  C  N  L  K  G  E  V  P  D  L  K  V  F  R  E  I  V  V  P  G  F  D  R  T  E  F  Q  V  N  Q  :  V  F  V  P  S  K  D  G  V  K  I  P  M  F  I  V  S  R  K  G  I  S  L  D  G  C  N  P  C  L  L  Y  G  Y  G  G  F  N  V  S  I  T  P  H  F  S  A  A  R  V  V  L  A  K  H  L  G  V  V  F  C  I  A  N  I  R  G  G  G  E  Y  G  E  E  W  Y  K  G  G  A  L  N  K  K  Q  N  C  F  D  D  F  I  S  A  A  E  Y  L  V  C  A  G  Y  T  Q  P  H  K  L  C  I  E  G  G  S  N  G  G  L  L  V  G  A  C  V  N  Q  :  R  P  D  L  F  G  C  A  L  A  H  V  G  V  M  D  M  L  R  F  H  K  F  T  I   : G  H  A  W  T  S  D  F  G  C  S  D  K  E  E  E  F  Q  W  L  I  K :   Y  S  P  L  H  N  V  S  R  P  W  E  K  S  V  N  L  A  F  V  Q  Y  P  S  I  M  L  L  T  A  D  H  D  D  R  V  V  P  L  H  S  L  K  L  L  A  :  T  M  Q  Y  V  L  C  T  S  Q  E  G  S  P  Q  T  N  P  I  V  G  R  I  E  R  K  A  G  H  G  C  G  R  P  T  Q  K  L  :  I  D  E  A  A  D  R  Y  A  F  M  A  K  E  L  G  A  A  W  V  E  *  N  Y  V  C  T  K  V  *  Y  G  K  *  W  N  T  N  K  V  V  G  F  *  C  P  H  S  W  C  F  I  I  Q  *  K  V  S  A   </second_frame>
            <third_frame>   F  R  G  F  Q  L  V  E  K  M  I  P  F  L  L  D  S  *  T  S  *  S  L  D  *  Y  I  S  V  I  S  K  V  K  F  L  T  L  K  Y  F  E  K  S  S  C  L  D  L  I  G  R  S  F  K  L  I  R :   Y  S  C  Q  V  K  M  V  S  R  Y  L  C  S  *  C  L  E  R  V  F  L  L  M  D  A  T  L  V  Y  Y  T  D  T  E  D  S  M  L  V  L  H  H  I  F  L  L  L  A  L  C  S  R  N  I  *  V  L  C  F  A  *  Q  I  F  V  V  A  E  N  M  E  K  S  G  I  K  V  V  L  L  T  K  S  K  I  A  L  M  T  L  F  L  L  L  S  I  L  Y  V  L  V  I  H  S  H  I  S  C  V  L  K  V  E  A  M  V  D  F  L  L  E  P  V  *  I  R :   D  L  I  S  L  A  V  L  L  L  M  L  V  L  W  I  C  L  D  S  T  N  S  L  *  :  A  M  H  G  P  L  I  L  V  V  L  I  R  R  K  N  F  S  G  *  S   : S  I  H  H  C  I  M  *  V  G  H  G  K  N  L  S  I  *  H  L  F  N  T  L  P  S  C  Y  *  L  Q  I  M  M  I  E  L  F  H  C  T  H  *  N  Y  W  L :   P  C  N  T  S  C  A  R  A  R  R  E  V  P  R  P  T  L  S  L  V  G  S  N  V  R  L  V  M  D  V  D  V  Q  H  K  N  S :   L  M  K  L  Q  T  D  M  H  S  W  L  K  S  W  V  L  L  G  L  S  K  I  M  F  V  Q  R  Y  N  M  E  N  S  G  T  Q  I  R  W  S  D  F  D  V  L  T  V  G  A  S  S  S  N  K  R  Y  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10248" stop="10421"/>
                    <exon start="10812" stop="11192"/>
                    <exon start="11700" stop="11775"/>
                    <exon start="11877" stop="11940"/>
                    <exon start="12064" stop="12202"/>
                    <exon start="12297" stop="12410"/>
                    <exon start="12556" stop="12621"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSGISARRKDDSIFIGFMNFLIPGLIYQCNLKGEVPDLKVFREIVVPGFDRTEFQVNQVFVPSKDGVKIPMFIVSRKGISLDGCNPCLLYGYGGFNVSITPHFSAARVVLAKHLGVVFCIANIRGGGEYGEEWYKGGALNKKQNCFDDFISAAEYLVCAGYTQPHKLCIEGGSNGGLLVGACVNQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDFGCSDKEEEFQWLIKYSPLHNVSRPWEKSVNLAFVQYPSIMLLTADHDDRVVPLHSLKLLATMQYVLCTSQEGSPQTNPIVGRIERKAGHGCGRPTQKLIDEAADRYAFMAKELGAAWVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="21060" PGL_stop="14683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21060" e_stop="20865"/>
            <exon e_start="19459" e_stop="19101"/>
            <exon e_start="18879" e_stop="18759"/>
            <exon e_start="18497" e_stop="18383"/>
            <exon e_start="17733" e_stop="17570"/>
            <exon e_start="17457" e_stop="17386"/>
            <exon e_start="16492" e_stop="16424"/>
            <exon e_start="16335" e_stop="16255"/>
            <exon e_start="16175" e_stop="16056"/>
            <exon e_start="15943" e_stop="15869"/>
            <exon e_start="15754" e_stop="15674"/>
            <exon e_start="14877" e_stop="14804"/>
            <exon e_start="14721" e_stop="14683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.432" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21060" e_stop="20865" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.957">
            <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19459" e_stop="19101" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18879" e_stop="18759" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18497" e_stop="18383" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.167">
            <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17733" e_stop="17570" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17457" e_stop="17386" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.432">
            <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16492" e_stop="16424" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16335" e_stop="16255" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16175" e_stop="16056" e_length="120"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="15943" e_stop="15869" e_length="75"/>
          </exon>
          <intron i_serial="10" don_prob="0.955" acc_prob="0.903">
            <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15754" e_stop="15674" e_length="81"/>
          </exon>
          <intron i_serial="11" don_prob="0.928" acc_prob="0.909">
            <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="14877" e_stop="14804" e_length="74"/>
          </exon>
          <intron i_serial="12" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="14721" e_stop="14683" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21060" stop="20865"/>
              <exon start="19459" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19296" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18832" stop="18759"/>
              <exon start="18497" stop="18383"/>
              <exon start="17733" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15674"/>
              <exon start="14877" stop="14804"/>
              <exon start="14721" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG : GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG : GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG : GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG : ACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG : GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG : TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG : GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT : GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC : GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG : AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG : AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG : GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</gDNA_template>
            <first_frame> I  H  F  S  S  K  *  C  R  Q  S  P  N  L  P  D  G  G  *  S  C  G  G  G  G  Y  R  R  Q  A  L  E  F  G  *  S  C  G  G  G  G  E  A  T  S  S  P  R  S  R  P  C  A  A  S  E  R  R  Q  R  F  M  V  H  W   : G  M  C  S  M  H  F  P  T  I  W  T  S  *  T  H  V  F  T  S  F  T  L  N  I  K  V  V  *  Y  F  R  R  C  D  E  K  Q  R  W  R  I  *  *  A  I  T  S  R  T  I  K  G  D  K  L  L  Q  N  M  L  R  H  F  A  I  S  L  L  *  *  Y  W  N  F  I  K  K  V  *  C  R  *  L  C  C  S  N  F  *  T  C  K  A  T  I  S  T  N  *  *  F  F  S  *  S  L  I  A  F  G  C  N  R  K  *  S  S  S  L  :  V  V  Y  E  E  *  V  P  P  *  T  L  V  P  R  E  G  *  M  S  I  H  F  Y  K  R  H  L  Q  T  I  S  D  K  S  I  T  K  I  V   : G  C  K  I  Y  S  K  F  F  S  R  S  L  N  I  L  T  F  *  C  I  N  K  R  *  R  S  G  R  E  W  R  K  *  E  E  E  N  R :   Q  S  R  F  H  W  *  P  Q  D  N  W  G  I  C  Y  S  S  C  *  V  F  *  *  *  Y  C  *  W  R  W  T  D  *  S  L  S  Q  G  G  P  R  S  Q  L  *  *  L  N  G  *  V  R  *   : G  R  *  A  L  F  S  G  H  S  L  L  Q  K  L  Y  I  H  W  R  E  I  S  *   : V  F  E  K  C  E  P  D  T  L  G  Y  *  *  *  T  N  G  R  S  I  R  *   : G  N  N  R  W  G  H  P  S  Y  L  P  G  *  Q  L  *  V  S  C  C  R  *  G  G  H  *   : C  S  D  A  R  Y  R  P  S  F  S  C  R  D  T  K  C  T  P  S  P  F  *  S  T  H  K  R  N  R  E  E  N  *  *  S  R  K  S  I   : R  P  G  *  K  S  *  S  C  R  Q  S  R  V  G  P  H  A  *  R  R  G  R  E  A   : E  A  V  R  C  I  G  V  D  F  S  S  C  Q  *  *  R  F  A  N  Y  I  I  T  K  G  I   : E  S  C  S  K  N  A  Y  K  G  S  S  S  P  K  S  I  G  E  R  E  N  Y  T  L  :  D  A  S  G  E  G  I  W  K  L  T  I  S </first_frame>
            <second_frame>  F  I  L  V  Q  S  S  A  A  S  R  L  I  Y  L  M  A  G  E  V  A  A  A  E  V  I  G  V  K  H  L  S  S  A  E  A  A  A  E  E  E  K  L  R  L  L  R  E  A  V  H  A  L  P  V  S  A  V  K  D  L  W  S  I  G  :  A  C  V  R  C  I  F  R  L  F  G  L  H  E  L  M  C  S  H  P  S  L  S  I  S  K  W  C  D  I  L  E  D  V  M  R  N  K  D  G  E  F  N  E  Q  S  H  Q  E  R  S  R  E  T  N  F  C  K  I  C  L  G  I  L  Q  F  L  Y  Y  D  D  T  G  T  L  L  K  K  Y  S  A  D  D  F  A  V  V  I  S  E  L  V  K  Q  Q  Y  Q  Q  I  D  S  F  S  L  E  V  S  L  P  S  V  V  T  E  N  D  Q  A  V  W :   L  Y  M  K  N  K  Y  R  H  E  L  W  F  Q  E  K  A  E  C  Q  F  I  S  T  K  D  I  F  K  L  L  V  I  N  P  L  Q  R  L  L  :  G  V  K  S  T  Q  S  S  F  R  V  R  L  T  Y  S  H  S  D  A  L  T  R  D  D  V  Q  E  G  N  G  G  N  K  R  R  K  T   : D  K  A  G  F  T  G  D  L  K  T  T  G  E  S  V  T  P  H  V  E  S  F  D  S  N  I  V  D  G  D  G  L  T  K  V  C  P  K  E  A  Q  D  L  S  C  N  N  L  M  A  K  L  D  K  :  V  G  K  P  C  S  L  A  I  H  C  C  R  S  S  T  Y  I  G  G  R  Y  L  K  :  Y  S  R  N  V  S  Q  T  R  W  V  I  D  D  E  R  M  G  E  A  S  V  E  :  E  I  I  G  G  A  I  L  P  I  F  Q  G  D  N  Y  K  F  H  A  A  G  R  E  D  I  D  :  V  R  M  L  G  T  G  R  P  F  L  V  E  I  Q  N  A  R  Q  V  P  S  E  A  L  I  K  E  I  E  K  K  I  N  S  L  E  S  Q  Y  :  V  R  V  K  N  L  R  A  V  G  S  Q  G  W  D  L  M  R  E  G  E  A  E  K  Q  :  K  Q  Y  A  A  L  V  W  I  S  R  P  V  S  D  E  D  L  Q  T  I  S  S  L  K  E  L  :  K  V  A  Q  K  T  P  I  R  V  L  H  R  R  S  P  L  E  R  E  K  I  I  H  W :   M  Q  V  E  R  V  S  G  S  S  Q  Y   </second_frame>
            <third_frame>   S  F  *  F  K  V  V  P  P  V  A  *  F  T  *  W  R  V  K  L  R  R  R  R  L  S  A  S  S  T  *  V  R  L  K  L  R  R  R  R  R  S  Y  V  F  S  A  K  P  S  M  R  C  Q  *  A  P  S  K  I  Y  G  P  L  G :   H  V  F  D  A  F  S  D  Y  L  D  F  M  N  S  C  V  H  I  L  H  S  Q  Y  Q  S  G  V  I  F  *  K  M  *  *  E  T  K  M  E  N  L  M  S  N  H  I  K  N  D  Q  G  R  Q  T  F  A  K  Y  A  *  A  F  C  N  F  S  I  M  M  I  L  E  L  Y  *  K  S  I  V  P  M  T  L  L  *  *  F  L  N  L  *  S  N  N  I  N  K  L  I  V  F  L  L  K  S  H  C  L  R  L  *  Q  K  M  I  K  Q  F   : G  C  I  *  R  I  S  T  A  M  N  F  G  S  K  R  R  L  N  V  N  S  F  L  Q  K  T  S  S  N  Y  *  *  *  I  H  Y  K  D  C  W :   V  *  N  L  L  K  V  L  F  A  F  A  *  H  T  H  I  L  M  H  *  Q  E  M  T  F  R  K  G  M  E  E  I  R  G  G  K  Q  :  T  K  Q  V  S  L  V  T  S  R  Q  L  G  N  L  L  L  L  M  L  S  L  L  I  V  I  L  L  M  E  M  D  *  L  K  F  V  P  R  R  P  K  I  S  V  V  I  T  *  W  L  S  *  I  R :   S  V  S  L  V  L  W  P  F  I  A  A  E  A  L  H  T  L  E  G  D  I  L  S :   I  R  E  M  *  A  R  H  A  G  L  L  M  M  N  E  W  E  K  H  P  L  R :   K  *  *  V  G  P  S  F  L  S  S  R  V  T  I  I  S  F  M  L  P  V  G  R  T  L  M :   F  G  C  S  V  Q  A  V  L  F  L  *  R  Y  K  M  H  A  K  S  L  L  K  H  S  *  K  K  *  R  R  K  L  I  V  *  K  V  N  T :   S  G  L  K  I  L  E  L  *  A  V  K  G  G  T  S  C  V  K  E  R  Q  R  S  R :   S  S  T  L  H  W  C  G  F  L  V  L  S  V  M  K  I  C  K  L  Y  H  H  *  R  N  * :   K  L  L  K  K  R  L  *  G  F  F  I  A  E  V  H  W  R  E  R  K  L  Y  I   : G  C  K  W  R  G  Y  L  E  A  H  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21059" stop="20865"/>
                    <exon start="19459" stop="19101"/>
                    <exon start="18879" stop="18759"/>
                    <exon start="18497" stop="18383"/>
                    <exon start="17733" stop="17570"/>
                    <exon start="17457" stop="17386"/>
                    <exon start="16492" stop="16424"/>
                    <exon start="16335" stop="16255"/>
                    <exon start="16175" stop="16056"/>
                    <exon start="15943" stop="15869"/>
                    <exon start="15754" stop="15674"/>
                    <exon start="14877" stop="14804"/>
                    <exon start="14721" stop="14685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILVQSSAASRLIYLMAGEVAAAEVIGVKHLSSAEAAAEEEKLRLLREAVHALPVSAVKDLWSIGACVRCIFRLFGLHELMCSHPSLSISKWCDILEDVMRNKDGEFNEQSHQERSRETNFCKICLGILQFLYYDDTGTLLKKYSADDFAVVISELVKQQYQQIDSFSLEVSLPSVVTENDQAVWLYMKNKYRHELWFQEKAECQFISTKDIFKLLVINPLQRLLGVKSTQSSFRVRLTYSHSDALTRDDVQEGNGGNKRRKTDKAGFTGDLKTTGESVTPHVESFDSNIVDGDGLTKVCPKEAQDLSCNNLMAKLDKVGKPCSLAIHCCRSSTYIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIIGGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIEKKINSLESQYVRVKNLRAVGSQGWDLMREGEAEKQKQYAALVWISRPVSDEDLQTISSLKELKVAQKTPIRVLHRRSPLEREKIIHWMQVERVSGSSQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18402" e_stop="18383"/>
            <exon e_start="17724" e_stop="17570"/>
            <exon e_start="17457" e_stop="17386"/>
            <exon e_start="16492" e_stop="16424"/>
            <exon e_start="16335" e_stop="16255"/>
            <exon e_start="16175" e_stop="16056"/>
            <exon e_start="15943" e_stop="15869"/>
            <exon e_start="15754" e_stop="15674"/>
            <exon e_start="14877" e_stop="14804"/>
            <exon e_start="14721" e_stop="14683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.432" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18402" e_stop="18383" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18382" i_stop="17725" i_length="658"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17724" e_stop="17570" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17457" e_stop="17386" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.432">
            <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16492" e_stop="16424" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16335" e_stop="16255" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16175" e_stop="16056" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="16055" i_stop="15944" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15943" e_stop="15869" e_length="75"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.903">
            <gDNA_intron_boundary i_start="15868" i_stop="15755" i_length="114"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="15754" e_stop="15674" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.928" acc_prob="0.909">
            <gDNA_intron_boundary i_start="15673" i_stop="14878" i_length="796"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="14877" e_stop="14804" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14803" i_stop="14722" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="14721" e_stop="14683" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18402" stop="18383"/>
              <exon start="17724" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18402" stop="18383"/>
              <exon start="17724" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15674"/>
              <exon start="14877" stop="14804"/>
              <exon start="14721" stop="14683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16056"/>
              <exon start="15943" stop="15869"/>
              <exon start="15754" stop="15685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATAAGAGGAGGAAAACAG : GTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG : GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG : TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG : GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT : GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATAC : GTCCGGGTTAAAAATCTTAGAGCTGTAGGCAGTCAAGGGTGGGACCTCATGCGTGAAGGAGAGGCAGAGAAGCAG : AAGCAGTACGCTGCATTGGTGTGGATTTCTCGTCCTGTCAGTGATGAAGATTTGCAAACTATATCATCACTAAAGGAATTG : AAAGTTGCTCAAAAAACGCCTATAAGGGTTCTTCATCGCCGAAGTCCATTGGAGAGAGAGAAAATTATACATTG : GATGCAAGTGGAGAGGGTATCTGGAAGCTCACAATATCT</gDNA_template>
            <first_frame> K  *  E  E  E  N  R :   F  H  W  *  P  Q  D  N  W  G  I  C  Y  S  S  C  *  V  F  *  *  *  Y  C  *  W  R  W  T  D  *  S  L  S  Q  G  G  P  R  S  Q  L  *  *  L  N  G  *  V  R  *   : G  R  *  A  L  F  S  G  H  S  L  L  Q  K  L  Y  I  H  W  R  E  I  S  *   : V  F  E  K  C  E  P  D  T  L  G  Y  *  *  *  T  N  G  R  S  I  R  *   : G  N  N  R  W  G  H  P  S  Y  L  P  G  *  Q  L  *  V  S  C  C  R  *  G  G  H  *   : C  S  D  A  R  Y  R  P  S  F  S  C  R  D  T  K  C  T  P  S  P  F  *  S  T  H  K  R  N  R  E  E  N  *  *  S  R  K  S  I   : R  P  G  *  K  S  *  S  C  R  Q  S  R  V  G  P  H  A  *  R  R  G  R  E  A   : E  A  V  R  C  I  G  V  D  F  S  S  C  Q  *  *  R  F  A  N  Y  I  I  T  K  G  I   : E  S  C  S  K  N  A  Y  K  G  S  S  S  P  K  S  I  G  E  R  E  N  Y  T  L  :  D  A  S  G  E  G  I  W  K  L  T  I  S </first_frame>
            <second_frame>  N  K  R  R  K  T   : G  F  T  G  D  L  K  T  T  G  E  S  V  T  P  H  V  E  S  F  D  S  N  I  V  D  G  D  G  L  T  K  V  C  P  K  E  A  Q  D  L  S  C  N  N  L  M  A  K  L  D  K  :  V  G  K  P  C  S  L  A  I  H  C  C  R  S  S  T  Y  I  G  G  R  Y  L  K  :  Y  S  R  N  V  S  Q  T  R  W  V  I  D  D  E  R  M  G  E  A  S  V  E  :  E  I  I  G  G  A  I  L  P  I  F  Q  G  D  N  Y  K  F  H  A  A  G  R  E  D  I  D  :  V  R  M  L  G  T  G  R  P  F  L  V  E  I  Q  N  A  R  Q  V  P  S  E  A  L  I  K  E  I  E  K  K  I  N  S  L  E  S  Q  Y  :  V  R  V  K  N  L  R  A  V  G  S  Q  G  W  D  L  M  R  E  G  E  A  E  K  Q  :  K  Q  Y  A  A  L  V  W  I  S  R  P  V  S  D  E  D  L  Q  T  I  S  S  L  K  E  L  :  K  V  A  Q  K  T  P  I  R  V  L  H  R  R  S  P  L  E  R  E  K  I  I  H  W :   M  Q  V  E  R  V  S  G  S  S  Q  Y   </second_frame>
            <third_frame>   I  R  G  G  K  Q  :  V  S  L  V  T  S  R  Q  L  G  N  L  L  L  L  M  L  S  L  L  I  V  I  L  L  M  E  M  D  *  L  K  F  V  P  R  R  P  K  I  S  V  V  I  T  *  W  L  S  *  I  R :   S  V  S  L  V  L  W  P  F  I  A  A  E  A  L  H  T  L  E  G  D  I  L  S :   I  R  E  M  *  A  R  H  A  G  L  L  M  M  N  E  W  E  K  H  P  L  R :   K  *  *  V  G  P  S  F  L  S  S  R  V  T  I  I  S  F  M  L  P  V  G  R  T  L  M :   F  G  C  S  V  Q  A  V  L  F  L  *  R  Y  K  M  H  A  K  S  L  L  K  H  S  *  K  K  *  R  R  K  L  I  V  *  K  V  N  T :   S  G  L  K  I  L  E  L  *  A  V  K  G  G  T  S  C  V  K  E  R  Q  R  S  R :   S  S  T  L  H  W  C  G  F  L  V  L  S  V  M  K  I  C  K  L  Y  H  H  *  R  N  * :   K  L  L  K  K  R  L  *  G  F  F  I  A  E  V  H  W  R  E  R  K  L  Y  I   : G  C  K  W  R  G  Y  L  E  A  H  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18401" stop="18383"/>
                    <exon start="17724" stop="17570"/>
                    <exon start="17457" stop="17386"/>
                    <exon start="16492" stop="16424"/>
                    <exon start="16335" stop="16255"/>
                    <exon start="16175" stop="16056"/>
                    <exon start="15943" stop="15869"/>
                    <exon start="15754" stop="15674"/>
                    <exon start="14877" stop="14804"/>
                    <exon start="14721" stop="14685"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKRRKTGFTGDLKTTGESVTPHVESFDSNIVDGDGLTKVCPKEAQDLSCNNLMAKLDKVGKPCSLAIHCCRSSTYIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIIGGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIEKKINSLESQYVRVKNLRAVGSQGWDLMREGEAEKQKQYAALVWISRPVSDEDLQTISSLKELKVAQKTPIRVLHRRSPLEREKIIHWMQVERVSGSSQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21060" e_stop="20865"/>
            <exon e_start="19459" e_stop="19101"/>
            <exon e_start="18879" e_stop="18759"/>
            <exon e_start="18497" e_stop="18383"/>
            <exon e_start="17733" e_stop="17570"/>
            <exon e_start="17457" e_stop="17386"/>
            <exon e_start="16492" e_stop="16424"/>
            <exon e_start="16335" e_stop="16255"/>
            <exon e_start="16175" e_stop="16055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.432" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21060" e_stop="20865" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.957">
            <gDNA_intron_boundary i_start="20864" i_stop="19460" i_length="1405"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19459" e_stop="19101" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19100" i_stop="18880" i_length="221"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18879" e_stop="18759" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18758" i_stop="18498" i_length="261"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18497" e_stop="18383" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.167">
            <gDNA_intron_boundary i_start="18382" i_stop="17734" i_length="649"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17733" e_stop="17570" e_length="164"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17569" i_stop="17458" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17457" e_stop="17386" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.432">
            <gDNA_intron_boundary i_start="17385" i_stop="16493" i_length="893"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16492" e_stop="16424" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="16423" i_stop="16336" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16335" e_stop="16255" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.925" acc_prob="0.988">
            <gDNA_intron_boundary i_start="16254" i_stop="16176" i_length="79"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16175" e_stop="16055" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21060" stop="20865"/>
              <exon start="19459" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19296" stop="19101"/>
              <exon start="18879" stop="18759"/>
              <exon start="18497" stop="18423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18832" stop="18759"/>
              <exon start="18497" stop="18383"/>
              <exon start="17733" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17596" stop="17570"/>
              <exon start="17457" stop="17386"/>
              <exon start="16492" stop="16424"/>
              <exon start="16335" stop="16255"/>
              <exon start="16175" stop="16096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTTTAGTTCAAAGTAGTGCCGCCAGTCGCCTAATTTACCTGATGGCGGGTGAAGTTGCGGCGGCGGAGGTTATCGGCGTCAAGCACTTGAGTTCGGCTGAAGCTGCGGCGGAGGAGGAGAAGCTACGTCTTCTCCGCGAAGCCGTCCATGCGCTGCCAGTGAGCGCCGTCAAAGATTTATGGTCCATTGGG : GCATGTGTTCGATGCATTTTCCGACTATTTGGACTTCATGAACTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATTTTAGAAGATGTGATGAGAAACAAAGATGGAGAATTTAATGAGCAATCACATCAAGAACGATCAAGGGAGACAAACTTTTGCAAAATATGCTTAGGCATTTTGCAATTTCTCTATTATGATGATACTGGAACTTTATTAAAAAAGTATAGTGCCGATGACTTTGCTGTAGTAATTTCTGAACTTGTAAAGCAACAATATCAACAAATTGATAGTTTTTCTCTTGAAGTCTCATTGCCTTCGGTTGTAACAGAAAATGATCAAGCAGTTTG : GTTGTATATGAAGAATAAGTACCGCCATGAACTTTGGTTCCAAGAGAAGGCTGAATGTCAATTCATTTCTACAAAAGACATCTTCAAACTATTAGTGATAAATCCATTACAAAGATTGTTG : GGTGTAAAATCTACTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGAGATGACGTTCAGGAAGGGAATGGAGGAAATAAGAGGAGGAAAACAG : ACAAAGCAGGTTTCACTGGTGACCTCAAGACAACTGGGGAATCTGTTACTCCTCATGTTGAGTCTTTTGATAGTAATATTGTTGATGGAGATGGACTGACTAAAGTTTGTCCCAAGGAGGCCCAAGATCTCAGTTGTAATAACTTAATGGCTAAGTTAGATAAG : GTCGGTAAGCCTTGTTCTCTGGCCATTCATTGCTGCAGAAGCTCTACATACATTGGAGGGAGATATCTTAAG : TATTCGAGAAATGTGAGCCAGACACGCTGGGTTATTGATGATGAACGAATGGGAGAAGCATCCGTTGAG : GAAATAATAGGTGGGGCCATCCTTCCTATCTTCCAGGGTGACAATTATAAGTTTCATGCTGCCGGTAGGGAGGACATTGAT : GTTCGGATGCTCGGTACAGGCCGTCCTTTTCTTGTAGAGATACAAAATGCACGCCAAGTCCCTTCTGAAGCACTCATAAAAGAAATAGAGAAGAAAATTAATAGTCTAGAAAGTCAATACG</gDNA_template>
            <first_frame> I  H  F  S  S  K  *  C  R  Q  S  P  N  L  P  D  G  G  *  S  C  G  G  G  G  Y  R  R  Q  A  L  E  F  G  *  S  C  G  G  G  G  E  A  T  S  S  P  R  S  R  P  C  A  A  S  E  R  R  Q  R  F  M  V  H  W   : G  M  C  S  M  H  F  P  T  I  W  T  S  *  T  H  V  F  T  S  F  T  L  N  I  K  V  V  *  Y  F  R  R  C  D  E  K  Q  R  W  R  I  *  *  A  I  T  S  R  T  I  K  G  D  K  L  L  Q  N  M  L  R  H  F  A  I  S  L  L  *  *  Y  W  N  F  I  K  K  V  *  C  R  *  L  C  C  S  N  F  *  T  C  K  A  T  I  S  T  N  *  *  F  F  S  *  S  L  I  A  F  G  C  N  R  K  *  S  S  S  L  :  V  V  Y  E  E  *  V  P  P  *  T  L  V  P  R  E  G  *  M  S  I  H  F  Y  K  R  H  L  Q  T  I  S  D  K  S  I  T  K  I  V   : G  C  K  I  Y  S  K  F  F  S  R  S  L  N  I  L  T  F  *  C  I  N  K  R  *  R  S  G  R  E  W  R  K  *  E  E  E  N  R :   Q  S  R  F  H  W  *  P  Q  D  N  W  G  I  C  Y  S  S  C  *  V  F  *  *  *  Y  C  *  W  R  W  T  D  *  S  L  S  Q  G  G  P  R  S  Q  L  *  *  L  N  G  *  V  R  *   : G  R  *  A  L  F  S  G  H  S  L  L  Q  K  L  Y  I  H  W  R  E  I  S  *   : V  F  E  K  C  E  P  D  T  L  G  Y  *  *  *  T  N  G  R  S  I  R  *   : G  N  N  R  W  G  H  P  S  Y  L  P  G  *  Q  L  *  V  S  C  C  R  *  G  G  H  *   : C  S  D  A  R  Y  R  P  S  F  S  C  R  D  T  K  C  T  P  S  P  F  *  S  T  H  K  R  N  R  E  E  N  *  *  S  R  K  S  I   </first_frame>
            <second_frame>  F  I  L  V  Q  S  S  A  A  S  R  L  I  Y  L  M  A  G  E  V  A  A  A  E  V  I  G  V  K  H  L  S  S  A  E  A  A  A  E  E  E  K  L  R  L  L  R  E  A  V  H  A  L  P  V  S  A  V  K  D  L  W  S  I  G  :  A  C  V  R  C  I  F  R  L  F  G  L  H  E  L  M  C  S  H  P  S  L  S  I  S  K  W  C  D  I  L  E  D  V  M  R  N  K  D  G  E  F  N  E  Q  S  H  Q  E  R  S  R  E  T  N  F  C  K  I  C  L  G  I  L  Q  F  L  Y  Y  D  D  T  G  T  L  L  K  K  Y  S  A  D  D  F  A  V  V  I  S  E  L  V  K  Q  Q  Y  Q  Q  I  D  S  F  S  L  E  V  S  L  P  S  V  V  T  E  N  D  Q  A  V  W :   L  Y  M  K  N  K  Y  R  H  E  L  W  F  Q  E  K  A  E  C  Q  F  I  S  T  K  D  I  F  K  L  L  V  I  N  P  L  Q  R  L  L  :  G  V  K  S  T  Q  S  S  F  R  V  R  L  T  Y  S  H  S  D  A  L  T  R  D  D  V  Q  E  G  N  G  G  N  K  R  R  K  T   : D  K  A  G  F  T  G  D  L  K  T  T  G  E  S  V  T  P  H  V  E  S  F  D  S  N  I  V  D  G  D  G  L  T  K  V  C  P  K  E  A  Q  D  L  S  C  N  N  L  M  A  K  L  D  K  :  V  G  K  P  C  S  L  A  I  H  C  C  R  S  S  T  Y  I  G  G  R  Y  L  K  :  Y  S  R  N  V  S  Q  T  R  W  V  I  D  D  E  R  M  G  E  A  S  V  E  :  E  I  I  G  G  A  I  L  P  I  F  Q  G  D  N  Y  K  F  H  A  A  G  R  E  D  I  D  :  V  R  M  L  G  T  G  R  P  F  L  V  E  I  Q  N  A  R  Q  V  P  S  E  A  L  I  K  E  I  E  K  K  I  N  S  L  E  S  Q  Y  </second_frame>
            <third_frame>   S  F  *  F  K  V  V  P  P  V  A  *  F  T  *  W  R  V  K  L  R  R  R  R  L  S  A  S  S  T  *  V  R  L  K  L  R  R  R  R  R  S  Y  V  F  S  A  K  P  S  M  R  C  Q  *  A  P  S  K  I  Y  G  P  L  G :   H  V  F  D  A  F  S  D  Y  L  D  F  M  N  S  C  V  H  I  L  H  S  Q  Y  Q  S  G  V  I  F  *  K  M  *  *  E  T  K  M  E  N  L  M  S  N  H  I  K  N  D  Q  G  R  Q  T  F  A  K  Y  A  *  A  F  C  N  F  S  I  M  M  I  L  E  L  Y  *  K  S  I  V  P  M  T  L  L  *  *  F  L  N  L  *  S  N  N  I  N  K  L  I  V  F  L  L  K  S  H  C  L  R  L  *  Q  K  M  I  K  Q  F   : G  C  I  *  R  I  S  T  A  M  N  F  G  S  K  R  R  L  N  V  N  S  F  L  Q  K  T  S  S  N  Y  *  *  *  I  H  Y  K  D  C  W :   V  *  N  L  L  K  V  L  F  A  F  A  *  H  T  H  I  L  M  H  *  Q  E  M  T  F  R  K  G  M  E  E  I  R  G  G  K  Q  :  T  K  Q  V  S  L  V  T  S  R  Q  L  G  N  L  L  L  L  M  L  S  L  L  I  V  I  L  L  M  E  M  D  *  L  K  F  V  P  R  R  P  K  I  S  V  V  I  T  *  W  L  S  *  I  R :   S  V  S  L  V  L  W  P  F  I  A  A  E  A  L  H  T  L  E  G  D  I  L  S :   I  R  E  M  *  A  R  H  A  G  L  L  M  M  N  E  W  E  K  H  P  L  R :   K  *  *  V  G  P  S  F  L  S  S  R  V  T  I  I  S  F  M  L  P  V  G  R  T  L  M :   F  G  C  S  V  Q  A  V  L  F  L  *  R  Y  K  M  H  A  K  S  L  L  K  H  S  *  K  K  *  R  R  K  L  I  V  *  K  V  N  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21059" stop="20865"/>
                    <exon start="19459" stop="19101"/>
                    <exon start="18879" stop="18759"/>
                    <exon start="18497" stop="18383"/>
                    <exon start="17733" stop="17570"/>
                    <exon start="17457" stop="17386"/>
                    <exon start="16492" stop="16424"/>
                    <exon start="16335" stop="16255"/>
                    <exon start="16175" stop="16056"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1296</number_coding_nucleotides>
                  <number_encoded_amino_acids>432</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FILVQSSAASRLIYLMAGEVAAAEVIGVKHLSSAEAAAEEEKLRLLREAVHALPVSAVKDLWSIGACVRCIFRLFGLHELMCSHPSLSISKWCDILEDVMRNKDGEFNEQSHQERSRETNFCKICLGILQFLYYDDTGTLLKKYSADDFAVVISELVKQQYQQIDSFSLEVSLPSVVTENDQAVWLYMKNKYRHELWFQEKAECQFISTKDIFKLLVINPLQRLLGVKSTQSSFRVRLTYSHSDALTRDDVQEGNGGNKRRKTDKAGFTGDLKTTGESVTPHVESFDSNIVDGDGLTKVCPKEAQDLSCNNLMAKLDKVGKPCSLAIHCCRSSTYIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIIGGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEALIKEIEKKINSLESQY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="26589" PGL_stop="21844"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26589" e_stop="26407"/>
            <exon e_start="26298" e_stop="26189"/>
            <exon e_start="24302" e_stop="24032"/>
            <exon e_start="23537" e_stop="23435"/>
            <exon e_start="23338" e_stop="22993"/>
            <exon e_start="22902" e_stop="22540"/>
            <exon e_start="22451" e_stop="22373"/>
            <exon e_start="22293" e_stop="21844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26589" e_stop="26407" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26298" e_stop="26189" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.916">
            <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24302" e_stop="24032" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24031" i_stop="23538" i_length="494"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23537" e_stop="23435" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23338" e_stop="22993" e_length="346"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22902" e_stop="22540" e_length="363"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22451" e_stop="22373" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.977">
            <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22293" e_stop="21844" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26589" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26581" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26570" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26570" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26569" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26569" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26566" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26566" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26566" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277899" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26565" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26564" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26564" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26561" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26561" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26559" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26557" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26555" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26551" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26527" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26527" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26514" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26479" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="22160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24291" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24204" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="23167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24127" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24063" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24047" stop="24032"/>
              <exon start="23537" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23493" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23493" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23337" stop="22993"/>
              <exon start="22902" stop="22558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23254" stop="22993"/>
              <exon start="22902" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23187" stop="22993"/>
              <exon start="22902" stop="22555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23164" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23144" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23044" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23015" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="22247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22841" stop="22540"/>
              <exon start="22451" stop="22381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22724" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22715" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22684" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22684" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22286" stop="21863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22217" stop="21845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22182" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22179" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22155" stop="21848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22082" stop="21844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTATAGCAAATTGCAGTGCTAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG : GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG : GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG : GACTTGAAAGCAATTCTTGACGGAGGCAGGAAGTTACCTTTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG : GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG : GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG : GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG : GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCAG</gDNA_template>
            <first_frame> Y  Y  S  K  L  Q  C  *  H  K  V  K  *  K  N  M  L  P  L  K  F  A  V  A  V  F  L  V  V  L  I  G  N  S  V  V  A  E  D  P  Y  R  Y  F  D  W  N  V  T  Y  G  T  I  Y  P  L  G  V  P  Q  Q  :  G  I  L  I  N  G  Q  F  P  G  P  D  I  N  S  V  T  N  D  N  L  V  I  N  I  H  N  S  L  D  E  P  F  L  L  S  W :   N  G  V  Q  N  R  R  N  S  F  V  D  G  V  Y  G  T  T  C  P  I  P  P  G  R  N  N  T  F  N  L  Q  V  K  D  Q  I  G  S  F  Y  Y  F  P  S  L  A  F  H  K  A  A  G  G  F  G  G  I  R  I  L  S  R  P  R  I  P  V  P  F  P  D  P  A  N  D  Y  T  I  L  I  G  D  W  Y  K  K  N  H  T  :  D  L  K  A  I  L  D  G  G  R  K  L  P  F  P  D  G  I  L  I  N  G  R  G  P  N  G  V  T  F  T  V  D  Q   : G  K  T  Y  R  L  R  I  S  N  V  G  L  Q  N  S  L  N  F  R  V  E  G  H  K  M  T  L  V  E  V  E  G  T  H  T  L  Q  T  T  Y  S  S  L  D  V  H  A  G  Q  S  Y  S  V  L  I  T  A  N  Q  E  A  K  D  H  Y  I  V  V  S  S  R  F  T  T  P  V  L  T  T  T  A  V  L  H  Y  S  S  S  N  T  P  V  S  G  P  P  P  G  G  P  T  I  Q  I  D  W  S  L  N  Q  A  R  S  I  R :   T  N  L  S  A  S  G  P  R  P  N  P  Q  G  S  Y  H  Y  G  M  I  N  T  T  K  T  I  R  L  A  S  S  A  G  Q  V  N  G  K  Q  R  Y  A  V  N  S  V  S  F  V  P  L  D  T  P  L  K  L  L  D  Y  F  K  I  G  G  F  R  V  G  S  I  P  D  S  P  T  G  G  G  I  Y  Q  D  T  S  V  L  G  V  N  Y  R  Q  F  I  E  I  I  F  E  N  N  E  D  I  V  Q  S  W  H  L  D  G  Y  S  F  W  V  V  G :   M  D  G  G  Q  W  T  Q  A  S  R  N  G  Y  N  L  R  D  A  V  S  R  C  T  T  Q  :  V  Y  P  K  S  W  T  A  I  Y  I  A  L  D  N  V  G  M  W  N  L  R  T  E  F  W  A  R  Q  Y  L  G  Q  Q  L  Y  M  R  V  Y  T  D  S  T  S  L  R  D  E  Y  P  I  P  R  G  A  R  L  C  G  K  V  A  N  R  H  T  R  P  L  *  S  K  F  C  N  S  S  R  G  *  F  N  F  I  Q  S  F  C  I  I  *  V  *  K  *  C  L  V  T  T  S  S  C  *  N  D  L  S  S  R  S  H  S  F  F  N  S  T  K  T  L  Y  F  V  L  S  S  L  L  *  L  P  *  I  M  I  N  E  V  H  F  E  L  S  Y  A  H  W  Q </first_frame>
            <second_frame>  I  I  A  N  C  S  A  N  I  K  *  S  R  K  I  C  C  R  *  N  S  P  *  R  C  F  *  W  Y  *  L  G  I  L  L  *  Q  K  I  L  I  D  I  S  I  G  M  S  L  M  E  L  Y  I  L  S  E  F  L  N  R :   E  F  *  L  M  V  N  F  L  V  L  I  S  T  R  S  P  M  T  I  S  L  S  I  S  T  T  A  W  M  N  L  F  Y  F  P   : G  T  E  Y  K  T  E  E  T  H  L  *  M  E  Y  M  E  Q  H  A  Q  Y  R  Q  G  E  I  T  H  S  I  Y  K  *  R  I  K  *  G  V  S  I  T  S  H  L  L  H  S  T  K  L  L  V  V  L  E  G  L  G  F  S  A  G  L  E  S  P  S  L  F  R  T  L  Q  T  T  T  P  S  S  L  E  I  G  T  K  R  T  T  R :   T  *  K  Q  F  L  T  E  A  G  S  Y  L  S  L  M  A  F  L  S  M  V  V  V  L  M  V  L  H  S  Q  S  I  K  :  G  K  P  I  D  *  G  Y  Q  T  L  D  C  K  I  H  *  I  S  A  L  K  D  T  K  *  H  *  L  K  *  R  E  H  T  H  C  K  Q  L  I  P  H  L  M  S  M  L  A  N  L  T  L  S  S  L  Q  L  I  K  K  Q  K  T  I  T  S  L  F  H  L  V  S  R  L  Q  S  S  P  P  L  L  Y  F  T  I  A  A  L  T  P  P  S  L  V  L  L  L  V  D  L  P  S  K  S  T  G  P  L  I  R  P  A  P  S   : G  Q  T  C  Q  Q  V  D  Q  G  Q  T  H  K  V  H  T  I  T  V  *  S  T  Q  L  K  P  S  D  L  L  A  L  L  V  K  *  M  A  N  R  D  M  L  S  T  A  C  R  L  C  H  L  I  L  L  *  N  Y  S  T  T  S  R  L  A  D  S  E  L  E  A  Y  L  I  P  Q  L  V  E  E  F  T  K  T  R  L  F  *  V  L  I  T  G  N  S  L  R  L  Y  S  K  I  M  R  T  S  S  R  A  G  I  L  M  A  T  L  F  G  L  *   : G  W  M  E  A  S  G  L  K  L  V  G  T  D  T  T  F  V  M  Q  F  H  V  A  Q  L  R :   S  I  P  S  H  G  P  R  Y  T  L  H  W  T  M  *  E  C  G  T  *  G  L  N  S  G  H  D  S  T  S  V  N  N  Y  T  *  E  F  T  Q  T  Q  P  H  *  E  T  N  I  Q  F  Q  E  A  L  V  F  V  A  R  W  L  I  G  T  H  D  H  F  K  A  N  S  A  I  L  V  E  D  N  L  I  L  Y  N  P  F  V  L  F  E  F  R  S  N  A  L  L  L  L  V  A  A  K  M  T  L  A  Q  G  R  I  L  S  S  I  P  R  K  H  Y  I  L  F  F  P  H  C  C  S  Y  L  K  L  *  *  M  K  C  I  L  N  Y  R  M  H  I  G   </second_frame>
            <third_frame>   L  *  Q  I  A  V  L  T  *  S  K  V  E  K  Y  V  A  A  K  I  R  R  S  G  V  F  S  G  I  N  W  E  F  C  C  S  R  R  S  L  *  I  F  R  L  E  C  H  L  W  N  Y  I  S  S  R  S  S  S  T   : G  N  S  D  *  W  S  I  S  W  S  *  Y  Q  L  G  H  Q  *  Q  S  R  Y  Q  Y  P  Q  Q  L  G  *  T  F  S  T  F  L  :  E  R  S  T  K  Q  K  K  L  I  C  R  W  S  I  W  N  N  M  P  N  T  A  R  E  K  *  H  I  Q  S  T  S  E  G  S  N  R  E  F  L  L  L  P  I  S  C  I  P  Q  S  C  W  W  F  W  R  D  *  D  S  Q  Q  A  *  N  P  R  P  F  S  G  P  C  K  R  L  H  H  P  H  W  R  L  V  Q  K  E  P  H   : G  L  E  S  N  S  *  R  R  Q  E  V  T  F  P  *  W  H  S  Y  Q  W  S  W  S  *  W  C  Y  I  H  S  R  S  R :   E  N  L  *  I  E  D  I  K  R  W  I  A  K  F  I  E  F  P  R  *  R  T  Q  N  D  I  S  *  S  R  G  N  T  H  I  A  N  N  L  F  L  T  *  C  P  C  W  P  I  L  L  C  P  H  Y  S  *  S  R  S  K  R  P  L  H  R  C  F  I  S  F  H  D  S  S  P  H  H  H  C  C  T  S  L  *  Q  L  *  H  P  R  L  W  S  S  S  W  W  T  Y  H  P  N  R  L  V  P  *  S  G  P  L  H  Q  :  D  K  L  V  S  K  W  T  K  A  K  P  T  R  F  I  P  L  R  Y  D  Q  H  N  *  N  H  Q  T  C  *  L  C  W  S  S  E  W  Q  T  E  I  C  C  Q  Q  R  V  V  C  A  T  *  Y  S  S  K  T  T  R  L  L  Q  D  W  R  I  Q  S  W  K  H  T  *  F  P  N  W  W  R  N  L  P  R  H  V  C  S  R  C  *  L  Q  A  I  H  *  D  Y  I  R  K  *  *  G  H  R  P  E  L  A  S  *  W  L  L  F  L  G  C  R  :  D  G  W  R  P  V  D  S  S  *  *  E  R  I  Q  P  S  *  C  S  F  T  L  H  N  S   : G  L  S  Q  V  M  D  R  D  I  H  C  I  G  Q  C  R  N  V  E  P  E  D  *  I  L  G  T  T  V  P  R  S  T  T  I  H  E  S  L  H  R  L  N  L  I  E  R  R  I  S  N  S  K  R  R  S  S  L  W  Q  G  G  *  S  A  H  T  T  T  L  K  Q  I  L  Q  F  *  *  R  I  I  *  F  Y  T  I  L  L  Y  Y  L  S  L  E  V  M  P  C  Y  Y  *  *  L  L  K  *  P  *  L  K  V  A  F  F  L  Q  F  H  E  N  I  I  F  C  S  F  L  I  V  V  V  T  L  N  Y  D  K  *  S  A  F  *  I  I  V  C  T  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26550" stop="26407"/>
                    <exon start="26298" stop="26189"/>
                    <exon start="24302" stop="24032"/>
                    <exon start="23537" stop="23435"/>
                    <exon start="23338" stop="22993"/>
                    <exon start="22902" stop="22540"/>
                    <exon start="22451" stop="22373"/>
                    <exon start="22293" stop="22081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1626</number_coding_nucleotides>
                  <number_encoded_amino_acids>542</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMLPLKFAVAVFLVVLIGNSVVAEDPYRYFDWNVTYGTIYPLGVPQQGILINGQFPGPDINSVTNDNLVINIHNSLDEPFLLSWNGVQNRRNSFVDGVYGTTCPIPPGRNNTFNLQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPANDYTILIGDWYKKNHTDLKAILDGGRKLPFPDGILINGRGPNGVTFTVDQGKTYRLRISNVGLQNSLNFRVEGHKMTLVEVEGTHTLQTTYSSLDVHAGQSYSVLITANQEAKDHYIVVSSRFTTPVLTTTAVLHYSSSNTPVSGPPPGGPTIQIDWSLNQARSIRTNLSASGPRPNPQGSYHYGMINTTKTIRLASSAGQVNGKQRYAVNSVSFVPLDTPLKLLDYFKIGGFRVGSIPDSPTGGGIYQDTSVLGVNYRQFIEIIFENNEDIVQSWHLDGYSFWVVGMDGGQWTQASRNGYNLRDAVSRCTTQVYPKSWTAIYIALDNVGMWNLRTEFWARQYLGQQLYMRVYTDSTSLRDEYPIPRGARLCGKVANRHTRPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26568" e_stop="26407"/>
            <exon e_start="26298" e_stop="26189"/>
            <exon e_start="24302" e_stop="24032"/>
            <exon e_start="23498" e_stop="23435"/>
            <exon e_start="23338" e_stop="22993"/>
            <exon e_start="22902" e_stop="22540"/>
            <exon e_start="22451" e_stop="22373"/>
            <exon e_start="22293" e_stop="21844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26568" e_stop="26407" e_length="162"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26406" i_stop="26299" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26298" e_stop="26189" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.916">
            <gDNA_intron_boundary i_start="26188" i_stop="24303" i_length="1886"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24302" e_stop="24032" e_length="271"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24031" i_stop="23499" i_length="533"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23498" e_stop="23435" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23434" i_stop="23339" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23338" e_stop="22993" e_length="346"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22992" i_stop="22903" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="22902" e_stop="22540" e_length="363"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22539" i_stop="22452" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22451" e_stop="22373" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.985" acc_prob="0.977">
            <gDNA_intron_boundary i_start="22372" i_stop="22294" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22293" e_stop="21844" e_length="450"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26568" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26566" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26566" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277899" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26564" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26564" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26558" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26555" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26551" stop="26407"/>
              <exon start="26298" stop="26189"/>
              <exon start="24302" stop="24032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26291" stop="26189"/>
              <exon start="24302" stop="24032"/>
              <exon start="23498" stop="23435"/>
              <exon start="23338" stop="23322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23493" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23493" stop="23435"/>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23338" stop="22993"/>
              <exon start="22902" stop="22668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23337" stop="22993"/>
              <exon start="22902" stop="22558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23263" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23254" stop="22993"/>
              <exon start="22902" stop="22644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23187" stop="22993"/>
              <exon start="22902" stop="22555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23164" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23144" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23044" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23015" stop="22993"/>
              <exon start="22902" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="22247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22841" stop="22540"/>
              <exon start="22451" stop="22381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22724" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22715" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22684" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22684" stop="22540"/>
              <exon start="22451" stop="22373"/>
              <exon start="22293" stop="21929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22286" stop="21863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22217" stop="21845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22182" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22179" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22155" stop="21848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22082" stop="21844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACATAAAGTAAAGTAGAAAAATATGTTGCCGCTAAAATTCGCCGTAGCGGTGTTTTTAGTGGTATTAATTGGGAATTCTGTTGTAGCAGAAGATCCTTATAGATATTTCGATTGGAATGTCACTTATGGAACTATATATCCTCTCGGAGTTCCTCAACAG : GGAATTCTGATTAATGGTCAATTTCCTGGTCCTGATATCAACTCGGTCACCAATGACAATCTCGTTATCAATATCCACAACAGCTTGGATGAACCTTTTCTACTTTCCTG : GAACGGAGTACAAAACAGAAGAAACTCATTTGTAGATGGAGTATATGGAACAACATGCCCAATACCGCCAGGGAGAAATAACACATTCAATCTACAAGTGAAGGATCAAATAGGGAGTTTCTATTACTTCCCATCTCTTGCATTCCACAAAGCTGCTGGTGGTTTTGGAGGGATTAGGATTCTCAGCAGGCCTAGAATCCCCGTCCCTTTTCCGGACCCTGCAAACGACTACACCATCCTCATTGGAGATTGGTACAAAAAGAACCACACG : TTCCCTGATGGCATTCTTATCAATGGTCGTGGTCCTAATGGTGTTACATTCACAGTCGATCAAG : GGAAAACCTATAGATTGAGGATATCAAACGTTGGATTGCAAAATTCATTGAATTTCCGCGTTGAAGGACACAAAATGACATTAGTTGAAGTAGAGGGAACACACACATTGCAAACAACTTATTCCTCACTTGATGTCCATGCTGGCCAATCTTACTCTGTCCTCATTACAGCTAATCAAGAAGCAAAAGACCATTACATCGTTGTTTCATCTCGTTTCACGACTCCAGTCCTCACCACCACTGCTGTACTTCACTATAGCAGCTCTAACACCCCCGTCTCTGGTCCTCCTCCTGGTGGACCTACCATCCAAATCGACTGGTCCCTTAATCAGGCCCGCTCCATCAG : GACAAACTTGTCAGCAAGTGGACCAAGGCCAAACCCACAAGGTTCATACCATTACGGTATGATCAACACAACTAAAACCATCAGACTTGCTAGCTCTGCTGGTCAAGTGAATGGCAAACAGAGATATGCTGTCAACAGCGTGTCGTTTGTGCCACTTGATACTCCTCTAAAACTACTCGACTACTTCAAGATTGGCGGATTCAGAGTTGGAAGCATACCTGATTCCCCAACTGGTGGAGGAATTTACCAAGACACGTCTGTTCTAGGTGTTAATTACAGGCAATTCATTGAGATTATATTCGAAAATAATGAGGACATCGTCCAGAGCTGGCATCTTGATGGCTACTCTTTTTGGGTTGTAGG : GATGGATGGAGGCCAGTGGACTCAAGCTAGTAGGAACGGATACAACCTTCGTGATGCAGTTTCACGTTGCACAACTCAG : GTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCAG</gDNA_template>
            <first_frame> *  H  K  V  K  *  K  N  M  L  P  L  K  F  A  V  A  V  F  L  V  V  L  I  G  N  S  V  V  A  E  D  P  Y  R  Y  F  D  W  N  V  T  Y  G  T  I  Y  P  L  G  V  P  Q  Q  :  G  I  L  I  N  G  Q  F  P  G  P  D  I  N  S  V  T  N  D  N  L  V  I  N  I  H  N  S  L  D  E  P  F  L  L  S  W :   N  G  V  Q  N  R  R  N  S  F  V  D  G  V  Y  G  T  T  C  P  I  P  P  G  R  N  N  T  F  N  L  Q  V  K  D  Q  I  G  S  F  Y  Y  F  P  S  L  A  F  H  K  A  A  G  G  F  G  G  I  R  I  L  S  R  P  R  I  P  V  P  F  P  D  P  A  N  D  Y  T  I  L  I  G  D  W  Y  K  K  N  H  T  :  F  P  D  G  I  L  I  N  G  R  G  P  N  G  V  T  F  T  V  D  Q   : G  K  T  Y  R  L  R  I  S  N  V  G  L  Q  N  S  L  N  F  R  V  E  G  H  K  M  T  L  V  E  V  E  G  T  H  T  L  Q  T  T  Y  S  S  L  D  V  H  A  G  Q  S  Y  S  V  L  I  T  A  N  Q  E  A  K  D  H  Y  I  V  V  S  S  R  F  T  T  P  V  L  T  T  T  A  V  L  H  Y  S  S  S  N  T  P  V  S  G  P  P  P  G  G  P  T  I  Q  I  D  W  S  L  N  Q  A  R  S  I  R :   T  N  L  S  A  S  G  P  R  P  N  P  Q  G  S  Y  H  Y  G  M  I  N  T  T  K  T  I  R  L  A  S  S  A  G  Q  V  N  G  K  Q  R  Y  A  V  N  S  V  S  F  V  P  L  D  T  P  L  K  L  L  D  Y  F  K  I  G  G  F  R  V  G  S  I  P  D  S  P  T  G  G  G  I  Y  Q  D  T  S  V  L  G  V  N  Y  R  Q  F  I  E  I  I  F  E  N  N  E  D  I  V  Q  S  W  H  L  D  G  Y  S  F  W  V  V  G :   M  D  G  G  Q  W  T  Q  A  S  R  N  G  Y  N  L  R  D  A  V  S  R  C  T  T  Q  :  V  Y  P  K  S  W  T  A  I  Y  I  A  L  D  N  V  G  M  W  N  L  R  T  E  F  W  A  R  Q  Y  L  G  Q  Q  L  Y  M  R  V  Y  T  D  S  T  S  L  R  D  E  Y  P  I  P  R  G  A  R  L  C  G  K  V  A  N  R  H  T  R  P  L  *  S  K  F  C  N  S  S  R  G  *  F  N  F  I  Q  S  F  C  I  I  *  V  *  K  *  C  L  V  T  T  S  S  C  *  N  D  L  S  S  R  S  H  S  F  F  N  S  T  K  T  L  Y  F  V  L  S  S  L  L  *  L  P  *  I  M  I  N  E  V  H  F  E  L  S  Y  A  H  W  Q </first_frame>
            <second_frame>  N  I  K  *  S  R  K  I  C  C  R  *  N  S  P  *  R  C  F  *  W  Y  *  L  G  I  L  L  *  Q  K  I  L  I  D  I  S  I  G  M  S  L  M  E  L  Y  I  L  S  E  F  L  N  R :   E  F  *  L  M  V  N  F  L  V  L  I  S  T  R  S  P  M  T  I  S  L  S  I  S  T  T  A  W  M  N  L  F  Y  F  P   : G  T  E  Y  K  T  E  E  T  H  L  *  M  E  Y  M  E  Q  H  A  Q  Y  R  Q  G  E  I  T  H  S  I  Y  K  *  R  I  K  *  G  V  S  I  T  S  H  L  L  H  S  T  K  L  L  V  V  L  E  G  L  G  F  S  A  G  L  E  S  P  S  L  F  R  T  L  Q  T  T  T  P  S  S  L  E  I  G  T  K  R  T  T  R :   S  L  M  A  F  L  S  M  V  V  V  L  M  V  L  H  S  Q  S  I  K  :  G  K  P  I  D  *  G  Y  Q  T  L  D  C  K  I  H  *  I  S  A  L  K  D  T  K  *  H  *  L  K  *  R  E  H  T  H  C  K  Q  L  I  P  H  L  M  S  M  L  A  N  L  T  L  S  S  L  Q  L  I  K  K  Q  K  T  I  T  S  L  F  H  L  V  S  R  L  Q  S  S  P  P  L  L  Y  F  T  I  A  A  L  T  P  P  S  L  V  L  L  L  V  D  L  P  S  K  S  T  G  P  L  I  R  P  A  P  S   : G  Q  T  C  Q  Q  V  D  Q  G  Q  T  H  K  V  H  T  I  T  V  *  S  T  Q  L  K  P  S  D  L  L  A  L  L  V  K  *  M  A  N  R  D  M  L  S  T  A  C  R  L  C  H  L  I  L  L  *  N  Y  S  T  T  S  R  L  A  D  S  E  L  E  A  Y  L  I  P  Q  L  V  E  E  F  T  K  T  R  L  F  *  V  L  I  T  G  N  S  L  R  L  Y  S  K  I  M  R  T  S  S  R  A  G  I  L  M  A  T  L  F  G  L  *   : G  W  M  E  A  S  G  L  K  L  V  G  T  D  T  T  F  V  M  Q  F  H  V  A  Q  L  R :   S  I  P  S  H  G  P  R  Y  T  L  H  W  T  M  *  E  C  G  T  *  G  L  N  S  G  H  D  S  T  S  V  N  N  Y  T  *  E  F  T  Q  T  Q  P  H  *  E  T  N  I  Q  F  Q  E  A  L  V  F  V  A  R  W  L  I  G  T  H  D  H  F  K  A  N  S  A  I  L  V  E  D  N  L  I  L  Y  N  P  F  V  L  F  E  F  R  S  N  A  L  L  L  L  V  A  A  K  M  T  L  A  Q  G  R  I  L  S  S  I  P  R  K  H  Y  I  L  F  F  P  H  C  C  S  Y  L  K  L  *  *  M  K  C  I  L  N  Y  R  M  H  I  G   </second_frame>
            <third_frame>   T  *  S  K  V  E  K  Y  V  A  A  K  I  R  R  S  G  V  F  S  G  I  N  W  E  F  C  C  S  R  R  S  L  *  I  F  R  L  E  C  H  L  W  N  Y  I  S  S  R  S  S  S  T   : G  N  S  D  *  W  S  I  S  W  S  *  Y  Q  L  G  H  Q  *  Q  S  R  Y  Q  Y  P  Q  Q  L  G  *  T  F  S  T  F  L  :  E  R  S  T  K  Q  K  K  L  I  C  R  W  S  I  W  N  N  M  P  N  T  A  R  E  K  *  H  I  Q  S  T  S  E  G  S  N  R  E  F  L  L  L  P  I  S  C  I  P  Q  S  C  W  W  F  W  R  D  *  D  S  Q  Q  A  *  N  P  R  P  F  S  G  P  C  K  R  L  H  H  P  H  W  R  L  V  Q  K  E  P  H   : V  P  *  W  H  S  Y  Q  W  S  W  S  *  W  C  Y  I  H  S  R  S  R :   E  N  L  *  I  E  D  I  K  R  W  I  A  K  F  I  E  F  P  R  *  R  T  Q  N  D  I  S  *  S  R  G  N  T  H  I  A  N  N  L  F  L  T  *  C  P  C  W  P  I  L  L  C  P  H  Y  S  *  S  R  S  K  R  P  L  H  R  C  F  I  S  F  H  D  S  S  P  H  H  H  C  C  T  S  L  *  Q  L  *  H  P  R  L  W  S  S  S  W  W  T  Y  H  P  N  R  L  V  P  *  S  G  P  L  H  Q  :  D  K  L  V  S  K  W  T  K  A  K  P  T  R  F  I  P  L  R  Y  D  Q  H  N  *  N  H  Q  T  C  *  L  C  W  S  S  E  W  Q  T  E  I  C  C  Q  Q  R  V  V  C  A  T  *  Y  S  S  K  T  T  R  L  L  Q  D  W  R  I  Q  S  W  K  H  T  *  F  P  N  W  W  R  N  L  P  R  H  V  C  S  R  C  *  L  Q  A  I  H  *  D  Y  I  R  K  *  *  G  H  R  P  E  L  A  S  *  W  L  L  F  L  G  C  R  :  D  G  W  R  P  V  D  S  S  *  *  E  R  I  Q  P  S  *  C  S  F  T  L  H  N  S   : G  L  S  Q  V  M  D  R  D  I  H  C  I  G  Q  C  R  N  V  E  P  E  D  *  I  L  G  T  T  V  P  R  S  T  T  I  H  E  S  L  H  R  L  N  L  I  E  R  R  I  S  N  S  K  R  R  S  S  L  W  Q  G  G  *  S  A  H  T  T  T  L  K  Q  I  L  Q  F  *  *  R  I  I  *  F  Y  T  I  L  L  Y  Y  L  S  L  E  V  M  P  C  Y  Y  *  *  L  L  K  *  P  *  L  K  V  A  F  F  L  Q  F  H  E  N  I  I  F  C  S  F  L  I  V  V  V  T  L  N  Y  D  K  *  S  A  F  *  I  I  V  C  T  L  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26550" stop="26407"/>
                    <exon start="26298" stop="26189"/>
                    <exon start="24302" stop="24032"/>
                    <exon start="23498" stop="23435"/>
                    <exon start="23338" stop="22993"/>
                    <exon start="22902" stop="22540"/>
                    <exon start="22451" stop="22373"/>
                    <exon start="22293" stop="22081"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNMLPLKFAVAVFLVVLIGNSVVAEDPYRYFDWNVTYGTIYPLGVPQQGILINGQFPGPDINSVTNDNLVINIHNSLDEPFLLSWNGVQNRRNSFVDGVYGTTCPIPPGRNNTFNLQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPANDYTILIGDWYKKNHTFPDGILINGRGPNGVTFTVDQGKTYRLRISNVGLQNSLNFRVEGHKMTLVEVEGTHTLQTTYSSLDVHAGQSYSVLITANQEAKDHYIVVSSRFTTPVLTTTAVLHYSSSNTPVSGPPPGGPTIQIDWSLNQARSIRTNLSASGPRPNPQGSYHYGMINTTKTIRLASSAGQVNGKQRYAVNSVSFVPLDTPLKLLDYFKIGGFRVGSIPDSPTGGGIYQDTSVLGVNYRQFIEIIFENNEDIVQSWHLDGYSFWVVGMDGGQWTQASRNGYNLRDAVSRCTTQVYPKSWTAIYIALDNVGMWNLRTEFWARQYLGQQLYMRVYTDSTSLRDEYPIPRGARLCGKVANRHTRPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22294" e_stop="21844"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22294" e_stop="21844" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22294" stop="21845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22286" stop="21863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22217" stop="21845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22182" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22179" stop="21858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22155" stop="21848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22082" stop="21844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTCTATCCCAAGTCATGGACCGCGATATACATTGCATTGGACAATGTAGGAATGTGGAACCTGAGGACTGAATTCTGGGCACGACAGTACCTCGGTCAACAACTATACATGAGAGTTTACACAGACTCAACCTCATTGAGAGACGAATATCCAATTCCAAGAGGCGCTCGTCTTTGTGGCAAGGTGGCTAATCGGCACACACGACCACTTTAAAGCAAATTCTGCAATTCTAGTAGAGGATAATTTAATTTTATACAATCCTTTTGTATTATTTGAGTTTAGAAGTAATGCCTTGTTACTACTAGTAGCTGCTAAAATGACCTTAGCTCAAGGTCGCATTCTTTCTTCAATTCCACGAAAACATTATATTTTGTTCTTTCCTCATTGTTGTAGTTACCTTAAATTATGATAAATGAAGTGCATTTTGAATTATCGTATGCACATTGGCAG</gDNA_template>
            <first_frame> G  L  S  Q  V  M  D  R  D  I  H  C  I  G  Q  C  R  N  V  E  P  E  D  *  I  L  G  T  T  V  P  R  S  T  T  I  H  E  S  L  H  R  L  N  L  I  E  R  R  I  S  N  S  K  R  R  S  S  L  W  Q  G  G  *  S  A  H  T  T  T  L  K  Q  I  L  Q  F  *  *  R  I  I  *  F  Y  T  I  L  L  Y  Y  L  S  L  E  V  M  P  C  Y  Y  *  *  L  L  K  *  P  *  L  K  V  A  F  F  L  Q  F  H  E  N  I  I  F  C  S  F  L  I  V  V  V  T  L  N  Y  D  K  *  S  A  F  *  I  I  V  C  T  L  A  </first_frame>
            <second_frame>  V  Y  P  K  S  W  T  A  I  Y  I  A  L  D  N  V  G  M  W  N  L  R  T  E  F  W  A  R  Q  Y  L  G  Q  Q  L  Y  M  R  V  Y  T  D  S  T  S  L  R  D  E  Y  P  I  P  R  G  A  R  L  C  G  K  V  A  N  R  H  T  R  P  L  *  S  K  F  C  N  S  S  R  G  *  F  N  F  I  Q  S  F  C  I  I  *  V  *  K  *  C  L  V  T  T  S  S  C  *  N  D  L  S  S  R  S  H  S  F  F  N  S  T  K  T  L  Y  F  V  L  S  S  L  L  *  L  P  *  I  M  I  N  E  V  H  F  E  L  S  Y  A  H  W  Q </second_frame>
            <third_frame>   S  I  P  S  H  G  P  R  Y  T  L  H  W  T  M  *  E  C  G  T  *  G  L  N  S  G  H  D  S  T  S  V  N  N  Y  T  *  E  F  T  Q  T  Q  P  H  *  E  T  N  I  Q  F  Q  E  A  L  V  F  V  A  R  W  L  I  G  T  H  D  H  F  K  A  N  S  A  I  L  V  E  D  N  L  I  L  Y  N  P  F  V  L  F  E  F  R  S  N  A  L  L  L  L  V  A  A  K  M  T  L  A  Q  G  R  I  L  S  S  I  P  R  K  H  Y  I  L  F  F  P  H  C  C  S  Y  L  K  L  *  *  M  K  C  I  L  N  Y  R  M  H  I  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22154" stop="21885"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETNIQFQEALVFVARWLIGTHDHFKANSAILVEDNLILYNPFVLFEFRSNALLLLVAAKMTLAQGRILSSIPRKHYILFFPHCCSYLKL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22293" stop="22081"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYPKSWTAIYIALDNVGMWNLRTEFWARQYLGQQLYMRVYTDSTSLRDEYPIPRGARLCGKVANRHTRPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="25814" e_stop="25261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="25814" e_stop="25261" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25814" stop="25261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTGGTTTGTATAGATCTACATTTTAAAAACAGAAAATAATAAAAAATGACATGTAAAATTGAATAAAAATGTCTACCAGTTACTAATCCTGGAGGACATTTTTGTTCAAAGAGCAAAAACAGAGTCTAGTTTGATATTTAGGGGTCCCTTTTTTCTTTTTTTGATTCCTTCTCATTTTAGCCGATTCTTGCGTCATTTAAAATAAAAAACTTTAGTAGTACTAGCGAATAAGTTTAAAATTGATGAACTGTGTCATACATGTTAACAACAGTTTTGTATATTTGATCTAAAAATTGAATGTTTCGGTGACCGCAAACTATTTCGGTGCGTAAAAAAAAAACTTATACAACATAACAACAAATCCCGTATAATTTCATAAACAAAAATATAATAAGTGAATAACTTAGGAAGAGAGCAATTTTCTAAAAATTCTCAACAAAAACTAGGTAGTATTGGAATTATTTATTTTGTGGCTTTGGTAAGATTTGGACGACAAGTTGACAAGTTCCACTTGACTATTGCTGGCTTCTACTGACAAAGAATAGAGAAAAAA</gDNA_template>
            <first_frame> A  G  L  Y  R  S  T  F  *  K  Q  K  I  I  K  N  D  M  *  N  *  I  K  M  S  T  S  Y  *  S  W  R  T  F  L  F  K  E  Q  K  Q  S  L  V  *  Y  L  G  V  P  F  F  F  F  *  F  L  L  I  L  A  D  S  C  V  I  *  N  K  K  L  *  *  Y  *  R  I  S  L  K  L  M  N  C  V  I  H  V  N  N  S  F  V  Y  L  I  *  K  L  N  V  S  V  T  A  N  Y  F  G  A  *  K  K  N  L  Y  N  I  T  T  N  P  V  *  F  H  K  Q  K  Y  N  K  *  I  T  *  E  E  S  N  F  L  K  I  L  N  K  N  *  V  V  L  E  L  F  I  L  W  L  W  *  D  L  D  D  K  L  T  S  S  T  *  L  L  L  A  S  T  D  K  E  *  R  K   </first_frame>
            <second_frame>  L  V  C  I  D  L  H  F  K  N  R  K  *  *  K  M  T  C  K  I  E  *  K  C  L  P  V  T  N  P  G  G  H  F  C  S  K  S  K  N  R  V  *  F  D  I  *  G  S  L  F  S  F  F  D  S  F  S  F  *  P  I  L  A  S  F  K  I  K  N  F  S  S  T  S  E  *  V  *  N  *  *  T  V  S  Y  M  L  T  T  V  L  Y  I  *  S  K  N  *  M  F  R  *  P  Q  T  I  S  V  R  K  K  K  T  Y  T  T  *  Q  Q  I  P  Y  N  F  I  N  K  N  I  I  S  E  *  L  R  K  R  A  I  F  *  K  F  S  T  K  T  R  *  Y  W  N  Y  L  F  C  G  F  G  K  I  W  T  T  S  *  Q  V  P  L  D  Y  C  W  L  L  L  T  K  N  R  E  K  </second_frame>
            <third_frame>   W  F  V  *  I  Y  I  L  K  T  E  N  N  K  K  *  H  V  K  L  N  K  N  V  Y  Q  L  L  I  L  E  D  I  F  V  Q  R  A  K  T  E  S  S  L  I  F  R  G  P  F  F  L  F  L  I  P  S  H  F  S  R  F  L  R  H  L  K  *  K  T  L  V  V  L  A  N  K  F  K  I  D  E  L  C  H  T  C  *  Q  Q  F  C  I  F  D  L  K  I  E  C  F  G  D  R  K  L  F  R  C  V  K  K  K  L  I  Q  H  N  N  K  S  R  I  I  S  *  T  K  I  *  *  V  N  N  L  G  R  E  Q  F  S  K  N  S  Q  Q  K  L  G  S  I  G  I  I  Y  F  V  A  L  V  R  F  G  R  Q  V  D  K  F  H  L  T  I  A  G  F  Y  *  Q  R  I  E  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23141" PGL_stop="23347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23141" e_stop="23347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="23141" e_stop="23347" e_length="207"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23141" stop="23347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAATGGTCTTTTGCTTCTTGATTAGCTGTAATGAGGACAGAGTAAGATTGGCCAGCATGGACATCAAGTGAGGAATAAGTTGTTTGCAATGTGTGTGTTCCCTCTACTTCAACTAATGTCATTTTGTGTCCTTCAACGCGGAAATTCAATGAATTTTGCAATCCAACGTTTGATATCCTCAATCTATAGGTTTTCCCTATTACAA</gDNA_template>
            <first_frame> C  N  G  L  L  L  L  D  *  L  *  *  G  Q  S  K  I  G  Q  H  G  H  Q  V  R  N  K  L  F  A  M  C  V  F  P  L  L  Q  L  M  S  F  C  V  L  Q  R  G  N  S  M  N  F  A  I  Q  R  L  I  S  S  I  Y  R  F  S  L  L  Q </first_frame>
            <second_frame>  V  M  V  F  C  F  L  I  S  C  N  E  D  R  V  R  L  A  S  M  D  I  K  *  G  I  S  C  L  Q  C  V  C  S  L  Y  F  N  *  C  H  F  V  S  F  N  A  E  I  Q  *  I  L  Q  S  N  V  *  Y  P  Q  S  I  G  F  P  Y  Y   </second_frame>
            <third_frame>   *  W  S  F  A  S  *  L  A  V  M  R  T  E  *  D  W  P  A  W  T  S  S  E  E  *  V  V  C  N  V  C  V  P  S  T  S  T  N  V  I  L  C  P  S  T  R  K  F  N  E  F  C  N  P  T  F  D  I  L  N  L  *  V  F  P  I  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="25944" PGL_stop="26641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25944" e_stop="26641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25944" e_stop="26641" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25944" stop="26641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355245" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGATTTGGCTGCAGAACCGTATTAACCAGACAGATTTGCCCAAACCAATGCACTTGCCAATTGTATAACCCAGAAACAAACTGGAAATTACCCAAAAATTATTCCTATGTAGCTATCCTTGTTTTTTTGGAAATTGATACAGTTAAGTTTATCACGAGTCCATCAAATGTGATTAGTGATCTTCAACGTAATCAACGCAACGCACTAAATGTGAACAGAAAAATGGAAGTTTCAGTGAATTACCAGGAAAGTAGAAAAGGTTCATCCAAGCTGTTGTGGATATTGATAACGAGATTGTCATTGGTGACCGAGTTGATATCAGGACCAGGAAATTGACCATTAATCAGAATTCCCTATACAAACATAACATAAATTTCACCGTTACATAAGCATATTGATCTAATAAACCCAGATCCATATATAATATAAAAAAAAAATACATTGCATTTACAGAAACGAACCTGTTGAGGAACTCCGAGAGGATATATAGTTCCATAAGTGACATTCCAATCGAAATATCTATAAGGATCTTCTGCTACAACAGAATTCCCAATTAATACCACTAAAAACACCGCTACGGCGAATTTTAGCGGCAACATATTTTTCTACTTTACTTTATGTTAGCACTGCAATTTGCTATAATAAGGAAAACAGAGTGGAAATAGAAGGATTTTAAAAGAAAAAAGAGTGGGTTCT</gDNA_template>
            <first_frame> K  D  L  A  A  E  P  Y  *  P  D  R  F  A  Q  T  N  A  L  A  N  C  I  T  Q  K  Q  T  G  N  Y  P  K  I  I  P  M  *  L  S  L  F  F  W  K  L  I  Q  L  S  L  S  R  V  H  Q  M  *  L  V  I  F  N  V  I  N  A  T  H  *  M  *  T  E  K  W  K  F  Q  *  I  T  R  K  V  E  K  V  H  P  S  C  C  G  Y  *  *  R  D  C  H  W  *  P  S  *  Y  Q  D  Q  E  I  D  H  *  S  E  F  P  I  Q  T  *  H  K  F  H  R  Y  I  S  I  L  I  *  *  T  Q  I  H  I  *  Y  K  K  K  I  H  C  I  Y  R  N  E  P  V  E  E  L  R  E  D  I  *  F  H  K  *  H  S  N  R  N  I  Y  K  D  L  L  L  Q  Q  N  S  Q  L  I  P  L  K  T  P  L  R  R  I  L  A  A  T  Y  F  S  T  L  L  Y  V  S  T  A  I  C  Y  N  K  E  N  R  V  E  I  E  G  F  *  K  K  K  E  W  V   </first_frame>
            <second_frame>  K  I  W  L  Q  N  R  I  N  Q  T  D  L  P  K  P  M  H  L  P  I  V  *  P  R  N  K  L  E  I  T  Q  K  L  F  L  C  S  Y  P  C  F  F  G  N  *  Y  S  *  V  Y  H  E  S  I  K  C  D  *  *  S  S  T  *  S  T  Q  R  T  K  C  E  Q  K  N  G  S  F  S  E  L  P  G  K  *  K  R  F  I  Q  A  V  V  D  I  D  N  E  I  V  I  G  D  R  V  D  I  R  T  R  K  L  T  I  N  Q  N  S  L  Y  K  H  N  I  N  F  T  V  T  *  A  Y  *  S  N  K  P  R  S  I  Y  N  I  K  K  K  Y  I  A  F  T  E  T  N  L  L  R  N  S  E  R  I  Y  S  S  I  S  D  I  P  I  E  I  S  I  R  I  F  C  Y  N  R  I  P  N  *  Y  H  *  K  H  R  Y  G  E  F  *  R  Q  H  I  F  L  L  Y  F  M  L  A  L  Q  F  A  I  I  R  K  T  E  W  K  *  K  D  F  K  R  K  K  S  G  F  </second_frame>
            <third_frame>   R  F  G  C  R  T  V  L  T  R  Q  I  C  P  N  Q  C  T  C  Q  L  Y  N  P  E  T  N  W  K  L  P  K  N  Y  S  Y  V  A  I  L  V  F  L  E  I  D  T  V  K  F  I  T  S  P  S  N  V  I  S  D  L  Q  R  N  Q  R  N  A  L  N  V  N  R  K  M  E  V  S  V  N  Y  Q  E  S  R  K  G  S  S  K  L  L  W  I  L  I  T  R  L  S  L  V  T  E  L  I  S  G  P  G  N  *  P  L  I  R  I  P  Y  T  N  I  T  *  I  S  P  L  H  K  H  I  D  L  I  N  P  D  P  Y  I  I  *  K  K  N  T  L  H  L  Q  K  R  T  C  *  G  T  P  R  G  Y  I  V  P  *  V  T  F  Q  S  K  Y  L  *  G  S  S  A  T  T  E  F  P  I  N  T  T  K  N  T  A  T  A  N  F  S  G  N  I  F  F  Y  F  T  L  C  *  H  C  N  L  L  *  *  G  K  Q  S  G  N  R  R  I  L  K  E  K  R  V  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25946" stop="26281"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFGCRTVLTRQICPNQCTCQLYNPETNWKLPKNYSYVAILVFLEIDTVKFITSPSNVISDLQRNQRNALNVNRKMEVSVNYQESRKGSSKLLWILITRLSLVTELISGPGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="34199" PGL_stop="33654"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34199" e_stop="33654"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="34199" e_stop="33654" e_length="546"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34199" stop="33662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34197" stop="33677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34197" stop="33677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34196" stop="33708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34191" stop="33716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34117" stop="33669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33950" stop="33654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33950" stop="33654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCGGGGTCGAATTTGTAAACCGGCCGAAGTCAACCTCCCGTGATGGCTATCCCTGCACCACCATCGAGCTCCGCCGTTCCCGGCGGTTATCAGAAATCTAAGAGATCGTTAGGTTTCTTTGCAAACGCAATGAAGAGGAAAGATAGCTTTTTACAATTCTTCGCCATGACAGGAATTCTTCTTCTGAGTATGAGATCGCTTGGGCAAAAGTACCGCATAAACGACCTCGAGGAGGATAACGCCGCGCTCAAGGAAGAACAAGAAGGGCTCGTTCACCGAATGAACCATATCAAGCAAAGTCTACTTGCTGAAGCTGCTAGTGAGCCCACTGGTGCCTTTGCTTCCCGTCTTCGCCGCCTCTTTGGTGATGAAAGCTGAAACAGTTGAGTTTTTTGTTCTGTCTGAGTTTGTATTTCATATATATGTCCAATATTAGCAGAATTTATAGATTTTATAATTTGGGATTTTGGAGACTTCATCTTGACCTGGAGTGTTAAATTTGAAGCCTTTTATCTTCAGATATCTTAATTTTTCACTTCTAAGG</gDNA_template>
            <first_frame> D  R  G  R  I  C  K  P  A  E  V  N  L  P  *  W  L  S  L  H  H  H  R  A  P  P  F  P  A  V  I  R  N  L  R  D  R  *  V  S  L  Q  T  Q  *  R  G  K  I  A  F  Y  N  S  S  P  *  Q  E  F  F  F  *  V  *  D  R  L  G  K  S  T  A  *  T  T  S  R  R  I  T  P  R  S  R  K  N  K  K  G  S  F  T  E  *  T  I  S  S  K  V  Y  L  L  K  L  L  V  S  P  L  V  P  L  L  P  V  F  A  A  S  L  V  M  K  A  E  T  V  E  F  F  V  L  S  E  F  V  F  H  I  Y  V  Q  Y  *  Q  N  L  *  I  L  *  F  G  I  L  E  T  S  S  *  P  G  V  L  N  L  K  P  F  I  F  R  Y  L  N  F  S  L  L  R </first_frame>
            <second_frame>  T  G  V  E  F  V  N  R  P  K  S  T  S  R  D  G  Y  P  C  T  T  I  E  L  R  R  S  R  R  L  S  E  I  *  E  I  V  R  F  L  C  K  R  N  E  E  E  R  *  L  F  T  I  L  R  H  D  R  N  S  S  S  E  Y  E  I  A  W  A  K  V  P  H  K  R  P  R  G  G  *  R  R  A  Q  G  R  T  R  R  A  R  S  P  N  E  P  Y  Q  A  K  S  T  C  *  S  C  *  *  A  H  W  C  L  C  F  P  S  S  P  P  L  W  *  *  K  L  K  Q  L  S  F  L  F  C  L  S  L  Y  F  I  Y  M  S  N  I  S  R  I  Y  R  F  Y  N  L  G  F  W  R  L  H  L  D  L  E  C  *  I  *  S  L  L  S  S  D  I  L  I  F  H  F  *   </second_frame>
            <third_frame>   P  G  S  N  L  *  T  G  R  S  Q  P  P  V  M  A  I  P  A  P  P  S  S  S  A  V  P  G  G  Y  Q  K  S  K  R  S  L  G  F  F  A  N  A  M  K  R  K  D  S  F  L  Q  F  F  A  M  T  G  I  L  L  L  S  M  R  S  L  G  Q  K  Y  R  I  N  D  L  E  E  D  N  A  A  L  K  E  E  Q  E  G  L  V  H  R  M  N  H  I  K  Q  S  L  L  A  E  A  A  S  E  P  T  G  A  F  A  S  R  L  R  R  L  F  G  D  E  S  *  N  S  *  V  F  C  S  V  *  V  C  I  S  Y  I  C  P  I  L  A  E  F  I  D  F  I  I  W  D  F  G  D  F  I  L  T  W  S  V  K  F  E  A  F  Y  L  Q  I  S  *  F  F  T  S  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34179" stop="33820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TGRSQPPVMAIPAPPSSSAVPGGYQKSKRSLGFFANAMKRKDSFLQFFAMTGILLLSMRSLGQKYRINDLEEDNAALKEEQEGLVHRMNHIKQSLLAEAASEPTGAFASRLRRLFGDES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37346" PGL_stop="43719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37469" e_stop="37596"/>
            <exon e_start="38515" e_stop="38891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.733" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37469" e_stop="37596" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.733">
            <gDNA_intron_boundary i_start="37597" i_stop="38514" i_length="918"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="38515" e_stop="38891" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37469" stop="37596"/>
              <exon start="38515" stop="38891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37469" stop="37596"/>
              <exon start="38515" stop="38668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37481" stop="37596"/>
              <exon start="38515" stop="38789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240408" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT : TAAGTAGAATCATTAAAGGCATCAAGAAGATGCAAGCTTTACAAGGATAGCTTAGTCGAGCTCACAAAAACAAGGATTTGTAGCTTCTTCCTAAACTATAGAGCTAAGAATATCCAAGAAGAGTTCTAAATTATTTACAAGGGTCAATCTGGATCAGCTGAAAAGGCTAACTACACATCTGCTTCTCAAAAGTTTTGTAGAAGTTGAAATTCCATCAAAACATTGTTTCTTCCGTTTGTCCATAAACACCAAAAGAGAGCACCAGGATCATCACCCAAATAGTCTTGATGGCTTTGTCAACTTCCCAAGAACTCCAACTTTCAAGAGCATCCCTATTAGAGAAAGGCATGACCCATAAAACAGCAAAACTATTTCAA</gDNA_template>
            <first_frame> K  Y  *  I  R  P  D  F  P  S  G  S  H  F  V  I  Q  L  N  L  W  P  K  L  T  P  F  T  L  L  C  S  F  R  S  Q  S  P  V  N  S  C  V :   K  *  N  H  *  R  H  Q  E  D  A  S  F  T  R  I  A  *  S  S  S  Q  K  Q  G  F  V  A  S  S  *  T  I  E  L  R  I  S  K  K  S  S  K  L  F  T  R  V  N  L  D  Q  L  K  R  L  T  T  H  L  L  L  K  S  F  V  E  V  E  I  P  S  K  H  C  F  F  R  L  S  I  N  T  K  R  E  H  Q  D  H  H  P  N  S  L  D  G  F  V  N  F  P  R  T  P  T  F  K  S  I  P  I  R  E  R  H  D  P  *  N  S  K  T  I  S  </first_frame>
            <second_frame>  N  I  R  F  D  P  I  S  P  P  V  H  I  S  S  F  S  *  I  S  G  Q  S  *  R  H  S  L  S  F  A  P  S  D  L  N  L  R  *  T  P  A   : L  S  R  I  I  K  G  I  K  K  M  Q  A  L  Q  G  *  L  S  R  A  H  K  N  K  D  L  *  L  L  P  K  L  *  S  *  E  Y  P  R  R  V  L  N  Y  L  Q  G  S  I  W  I  S  *  K  G  *  L  H  I  C  F  S  K  V  L  *  K  L  K  F  H  Q  N  I  V  S  S  V  C  P  *  T  P  K  E  S  T  R  I  I  T  Q  I  V  L  M  A  L  S  T  S  Q  E  L  Q  L  S  R  A  S  L  L  E  K  G  M  T  H  K  T  A  K  L  F  Q </second_frame>
            <third_frame>   I  L  D  S  T  R  F  P  L  R  F  T  F  R  H  S  A  K  S  L  A  K  V  D  A  I  H  S  P  L  L  L  P  I  S  I  S  G  E  L  L  R  :  *  V  E  S  L  K  A  S  R  R  C  K  L  Y  K  D  S  L  V  E  L  T  K  T  R  I  C  S  F  F  L  N  Y  R  A  K  N  I  Q  E  E  F  *  I  I  Y  K  G  Q  S  G  S  A  E  K  A  N  Y  T  S  A  S  Q  K  F  C  R  S  *  N  S  I  K  T  L  F  L  P  F  V  H  K  H  Q  K  R  A  P  G  S  S  P  K  *  S  *  W  L  C  Q  L  P  K  N  S  N  F  Q  E  H  P  Y  *  R  K  A  *  P  I  K  Q  Q  N  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38609" stop="38872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIELRISKKSSKLFTRVNLDQLKRLTTHLLLKSFVEVEIPSKHCFFRLSINTKREHQDHHPNSLDGFVNFPRTPTFKSIPIRERHDP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37510" e_stop="37596"/>
            <exon e_start="40983" e_stop="41135"/>
            <exon e_start="41456" e_stop="41573"/>
            <exon e_start="42527" e_stop="42631"/>
            <exon e_start="42744" e_stop="42868"/>
            <exon e_start="42961" e_stop="43029"/>
            <exon e_start="43283" e_stop="43432"/>
            <exon e_start="43524" e_stop="43593"/>
            <exon e_start="43671" e_stop="43719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.261" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.459" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.462" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.473" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37510" e_stop="37596" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37597" i_stop="40982" i_length="3386"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40983" e_stop="41135" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.261" acc_prob="0.974">
            <gDNA_intron_boundary i_start="41136" i_stop="41455" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41456" e_stop="41573" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.459">
            <gDNA_intron_boundary i_start="41574" i_stop="42526" i_length="953"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42527" e_stop="42631" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.944" acc_prob="0.462">
            <gDNA_intron_boundary i_start="42632" i_stop="42743" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42744" e_stop="42868" e_length="125"/>
          </exon>
          <intron i_serial="5" don_prob="0.936" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42869" i_stop="42960" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="42961" e_stop="43029" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.952">
            <gDNA_intron_boundary i_start="43030" i_stop="43282" i_length="253"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43283" e_stop="43432" e_length="150"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.984">
            <gDNA_intron_boundary i_start="43433" i_stop="43523" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43524" e_stop="43593" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.473" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43594" i_stop="43670" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43671" e_stop="43719" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37510" stop="37596"/>
              <exon start="40983" stop="41135"/>
              <exon start="41456" stop="41573"/>
              <exon start="42527" stop="42631"/>
              <exon start="42744" stop="42868"/>
              <exon start="42961" stop="43029"/>
              <exon start="43283" stop="43432"/>
              <exon start="43524" stop="43529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37524" stop="37596"/>
              <exon start="40983" stop="41135"/>
              <exon start="41456" stop="41573"/>
              <exon start="42527" stop="42631"/>
              <exon start="42744" stop="42868"/>
              <exon start="42961" stop="43029"/>
              <exon start="43283" stop="43351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42996" stop="43029"/>
              <exon start="43283" stop="43432"/>
              <exon start="43524" stop="43593"/>
              <exon start="43671" stop="43719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGT : GTAGTTGTTGTTTCTGAAGTCTTCATGGCTGATCAGCAAGCAGTTGAAGGGTCAAGTACAAGTAATGATTCTGGTGGAAGTTCTGAATCAACCGTGGTTCTCAACATCAAGACCTTAGATTCCCAGACCTATACTTTTAACGTGGATAAGAAT : TTGCAAGTTTCAGCCTTGAAGGACAAACTAGCAAGTCAGATTGGTGTACCTGTTGAGCAGCAGAGACTAATTTTTAGGGGCAAGGTCTTGAAGGATAATCACCTTCTTTCTGAATATT : ATGTGGAAAATGGGGACACACTACATTTAGTGCTGAGGCAGTCTCAATTGCAAGCTCCATCAGGTGGTAGCAGTGGCGAAGCTACTACTAACAATGTTAACAGAG : GACAAGAGCCTCAACCCACTGCTGGTGGCTCACGGAATCGTATCGGGCAGATTTCACACAGTGTTGTCCTTGGAACTTTTAATGTTGGAGATCCGGGGGAAGGACTTGTGCCTGATCTTAATCGG : GTTATTGGGGCAGTTTTGAACACTGTAGGGATCGGGAACATGACCGGTGGACAGCTTCCTGGTGTGCAG : GCCAGCACTCCAGCTCCTCGCCCTCAAGGAAATGAGAGTTTAAGTCAGTCAGGAAGTCAGCAATCTGGGCAGGCATTTTCTGGTCAATCTTTGCCGCAAGTAGTGCAAATTCCTCTGGGGGCAGCAATAGCTGTCCCCTCAATTAATTTG : CCCCTTTTGGATTCCTTGATCACGCTTTCTGAATTCATGGACGGGATGGAGCATGTATTCTCACAGAATG : GTTACCCGCCGAACCAGTCACCTAATAATGCGGGAGATCCACCTGCAGT</gDNA_template>
            <first_frame> R  H  S  A  K  S  L  A  K  V  D  A  I  H  S  P  L  L  L  P  I  S  I  S  G  E  L  L  R  :  V  V  V  V  S  E  V  F  M  A  D  Q  Q  A  V  E  G  S  S  T  S  N  D  S  G  G  S  S  E  S  T  V  V  L  N  I  K  T  L  D  S  Q  T  Y  T  F  N  V  D  K  N  :  L  Q  V  S  A  L  K  D  K  L  A  S  Q  I  G  V  P  V  E  Q  Q  R  L  I  F  R  G  K  V  L  K  D  N  H  L  L  S  E  Y   : Y  V  E  N  G  D  T  L  H  L  V  L  R  Q  S  Q  L  Q  A  P  S  G  G  S  S  G  E  A  T  T  N  N  V  N  R   : G  Q  E  P  Q  P  T  A  G  G  S  R  N  R  I  G  Q  I  S  H  S  V  V  L  G  T  F  N  V  G  D  P  G  E  G  L  V  P  D  L  N  R  :  V  I  G  A  V  L  N  T  V  G  I  G  N  M  T  G  G  Q  L  P  G  V  Q  :  A  S  T  P  A  P  R  P  Q  G  N  E  S  L  S  Q  S  G  S  Q  Q  S  G  Q  A  F  S  G  Q  S  L  P  Q  V  V  Q  I  P  L  G  A  A  I  A  V  P  S  I  N  L  :  P  L  L  D  S  L  I  T  L  S  E  F  M  D  G  M  E  H  V  F  S  Q  N   : G  Y  P  P  N  Q  S  P  N  N  A  G  D  P  P  A   </first_frame>
            <second_frame>  V  I  Q  L  N  L  W  P  K  L  T  P  F  T  L  L  C  S  F  R  S  Q  S  P  V  N  S  C  V :   *  L  L  F  L  K  S  S  W  L  I  S  K  Q  L  K  G  Q  V  Q  V  M  I  L  V  E  V  L  N  Q  P  W  F  S  T  S  R  P  *  I  P  R  P  I  L  L  T  W  I  R  I :   C  K  F  Q  P  *  R  T  N  *  Q  V  R  L  V  Y  L  L  S  S  R  D  *  F  L  G  A  R  S  *  R  I  I  T  F  F  L  N  I  :  M  W  K  M  G  T  H  Y  I  *  C  *  G  S  L  N  C  K  L  H  Q  V  V  A  V  A  K  L  L  L  T  M  L  T  E  :  D  K  S  L  N  P  L  L  V  A  H  G  I  V  S  G  R  F  H  T  V  L  S  L  E  L  L  M  L  E  I  R  G  K  D  L  C  L  I  L  I  G :   L  L  G  Q  F  *  T  L  *  G  S  G  T  *  P  V  D  S  F  L  V  C  R :   P  A  L  Q  L  L  A  L  K  E  M  R  V  *  V  S  Q  E  V  S  N  L  G  R  H  F  L  V  N  L  C  R  K  *  C  K  F  L  W  G  Q  Q  *  L  S  P  Q  L  I  C :   P  F  W  I  P  *  S  R  F  L  N  S  W  T  G  W  S  M  Y  S  H  R  M  :  V  T  R  R  T  S  H  L  I  M  R  E  I  H  L  Q  </second_frame>
            <third_frame>   S  F  S  *  I  S  G  Q  S  *  R  H  S  L  S  F  A  P  S  D  L  N  L  R  *  T  P  A   : C  S  C  C  F  *  S  L  H  G  *  S  A  S  S  *  R  V  K  Y  K  *  *  F  W  W  K  F  *  I  N  R  G  S  Q  H  Q  D  L  R  F  P  D  L  Y  F  *  R  G  *  E   : F  A  S  F  S  L  E  G  Q  T  S  K  S  D  W  C  T  C  *  A  A  E  T  N  F  *  G  Q  G  L  E  G  *  S  P  S  F  *  I  L :   C  G  K  W  G  H  T  T  F  S  A  E  A  V  S  I  A  S  S  I  R  W  *  Q  W  R  S  Y  Y  *  Q  C  *  Q  R :   T  R  A  S  T  H  C  W  W  L  T  E  S  Y  R  A  D  F  T  Q  C  C  P  W  N  F  *  C  W  R  S  G  G  R  T  C  A  *  S  *  S   : G  Y  W  G  S  F  E  H  C  R  D  R  E  H  D  R  W  T  A  S  W  C  A   : G  Q  H  S  S  S  S  P  S  R  K  *  E  F  K  S  V  R  K  S  A  I  W  A  G  I  F  W  S  I  F  A  A  S  S  A  N  S  S  G  G  S  N  S  C  P  L  N  *  F   : A  P  F  G  F  L  D  H  A  F  *  I  H  G  R  D  G  A  C  I  L  T  E  W :   L  P  A  E  P  V  T  *  *  C  G  R  S  T  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37510" stop="37596"/>
                    <exon start="40983" stop="41135"/>
                    <exon start="41456" stop="41573"/>
                    <exon start="42527" stop="42631"/>
                    <exon start="42744" stop="42868"/>
                    <exon start="42961" stop="43029"/>
                    <exon start="43283" stop="43432"/>
                    <exon start="43524" stop="43593"/>
                    <exon start="43671" stop="43717"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHSAKSLAKVDAIHSPLLLPISISGELLRVVVVSEVFMADQQAVEGSSTSNDSGGSSESTVVLNIKTLDSQTYTFNVDKNLQVSALKDKLASQIGVPVEQQRLIFRGKVLKDNHLLSEYYVENGDTLHLVLRQSQLQAPSGGSSGEATTNNVNRGQEPQPTAGGSRNRIGQISHSVVLGTFNVGDPGEGLVPDLNRVIGAVLNTVGIGNMTGGQLPGVQASTPAPRPQGNESLSQSGSQQSGQAFSGQSLPQVVQIPLGAAIAVPSINLPLLDSLITLSEFMDGMEHVFSQNGYPPNQSPNNAGDPPA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37346" e_stop="37825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37346" e_stop="37825" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37346" stop="37825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATTGTGGTGACCCGGATACCCATAAACCCATCTCCGTTTCAGCTGGAGCTCTGGTGGCGTCGCGGCTACAAGCCGGATAAATAAATTCTAGATCCTTCTGGAATGTTATAACGAGCTGGCAAATATTAGATTCGACCCGATTTCCCCTCCGGTTCACATTTCGTCATTCAGCTAAATCTCTGGCCAAAGTTGACGCCATTCACTCTCCTTTGCTCCTTCCGATCTCAATCTCCGGTGAACTCCTGCGTGTAAGTTTCCGTCGTTATCTCTCCGGTAGAATCATGCTATGAATTTTAATCTGTTGAAAATCAATCGTAAATTAGGTTAAAAATGTTTTTATGTTGTTTGATTCGTATGAATAGAATTATACATTTAATCCTCTCTTGTTTCCATGATGTCTACAAAGTTTTGATGGTTACTAGTCAGTTTTGCCGCCAGTTTCCTCAACATTTTATCCAAGAAAATGAGGGGAAAAAG</gDNA_template>
            <first_frame> S  I  V  V  T  R  I  P  I  N  P  S  P  F  Q  L  E  L  W  W  R  R  G  Y  K  P  D  K  *  I  L  D  P  S  G  M  L  *  R  A  G  K  Y  *  I  R  P  D  F  P  S  G  S  H  F  V  I  Q  L  N  L  W  P  K  L  T  P  F  T  L  L  C  S  F  R  S  Q  S  P  V  N  S  C  V  *  V  S  V  V  I  S  P  V  E  S  C  Y  E  F  *  S  V  E  N  Q  S  *  I  R  L  K  M  F  L  C  C  L  I  R  M  N  R  I  I  H  L  I  L  S  C  F  H  D  V  Y  K  V  L  M  V  T  S  Q  F  C  R  Q  F  P  Q  H  F  I  Q  E  N  E  G  K  K </first_frame>
            <second_frame>  R  L  W  *  P  G  Y  P  *  T  H  L  R  F  S  W  S  S  G  G  V  A  A  T  S  R  I  N  K  F  *  I  L  L  E  C  Y  N  E  L  A  N  I  R  F  D  P  I  S  P  P  V  H  I  S  S  F  S  *  I  S  G  Q  S  *  R  H  S  L  S  F  A  P  S  D  L  N  L  R  *  T  P  A  C  K  F  P  S  L  S  L  R  *  N  H  A  M  N  F  N  L  L  K  I  N  R  K  L  G  *  K  C  F  Y  V  V  *  F  V  *  I  E  L  Y  I  *  S  S  L  V  S  M  M  S  T  K  F  *  W  L  L  V  S  F  A  A  S  F  L  N  I  L  S  K  K  M  R  G  K   </second_frame>
            <third_frame>   D  C  G  D  P  D  T  H  K  P  I  S  V  S  A  G  A  L  V  A  S  R  L  Q  A  G  *  I  N  S  R  S  F  W  N  V  I  T  S  W  Q  I  L  D  S  T  R  F  P  L  R  F  T  F  R  H  S  A  K  S  L  A  K  V  D  A  I  H  S  P  L  L  L  P  I  S  I  S  G  E  L  L  R  V  S  F  R  R  Y  L  S  G  R  I  M  L  *  I  L  I  C  *  K  S  I  V  N  *  V  K  N  V  F  M  L  F  D  S  Y  E  *  N  Y  T  F  N  P  L  L  F  P  *  C  L  Q  S  F  D  G  Y  *  S  V  L  P  P  V  S  S  T  F  Y  P  R  K  *  G  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37429" stop="37638"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INSRSFWNVITSWQILDSTRFPLRFTFRHSAKSLAKVDAIHSPLLLPISISGELLRVSFRRYLSGRIML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="46181" PGL_stop="49593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46181" e_stop="46238"/>
            <exon e_start="46321" e_stop="46392"/>
            <exon e_start="46505" e_stop="46628"/>
            <exon e_start="46751" e_stop="46924"/>
            <exon e_start="47091" e_stop="47245"/>
            <exon e_start="47330" e_stop="47479"/>
            <exon e_start="48389" e_stop="48982"/>
            <exon e_start="49066" e_stop="49221"/>
            <exon e_start="49303" e_stop="49593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.983"/>
          <exon-intron don_prob="0.136" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.749" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.768" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.400" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="46181" e_stop="46238" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46239" i_stop="46320" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46321" e_stop="46392" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.136" acc_prob="0.953">
            <gDNA_intron_boundary i_start="46393" i_stop="46504" i_length="112"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46505" e_stop="46628" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="46629" i_stop="46750" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46751" e_stop="46924" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.749">
            <gDNA_intron_boundary i_start="46925" i_stop="47090" i_length="166"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47091" e_stop="47245" e_length="155"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.964">
            <gDNA_intron_boundary i_start="47246" i_stop="47329" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="47330" e_stop="47479" e_length="150"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.768">
            <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="48389" e_stop="48982" e_length="594"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="49066" e_stop="49221" e_length="156"/>
          </exon>
          <intron i_serial="8" don_prob="0.400" acc_prob="0.975">
            <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81"/>
          </intron>
          <exon e_serial="9" e_score="0.962">
            <gDNA_exon_boundary e_start="49303" e_stop="49593" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46181" stop="46238"/>
              <exon start="46321" stop="46392"/>
              <exon start="46505" stop="46628"/>
              <exon start="46751" stop="46924"/>
              <exon start="47091" stop="47245"/>
              <exon start="47330" stop="47381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46212" stop="46238"/>
              <exon start="46321" stop="46392"/>
              <exon start="46505" stop="46628"/>
              <exon start="46751" stop="46924"/>
              <exon start="47091" stop="47245"/>
              <exon start="47330" stop="47479"/>
              <exon start="48389" stop="48415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46362" stop="46392"/>
              <exon start="46505" stop="46628"/>
              <exon start="46751" stop="46924"/>
              <exon start="47091" stop="47221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47191" stop="47245"/>
              <exon start="47330" stop="47479"/>
              <exon start="48389" stop="48740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48443" stop="48944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48497" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48776" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48777" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCCCTTCTATTAGAGCTTGGAAGGACGATATTGACTCTCAGAATGGGACAATCACCT : GCTGAATCTTCAGTAAATGCTGGTCCTGCAGTTTACATATCTTCCACCGGGCCGAACCCCATAATGGTTCAG : CCTTTCCCCCTTCAAACCAGTTCACTCTTCGGTAACTCAGCTGCTGTTCCACCTAACCCCGGTACCTTTGGCGCTCTTGGGATTGGTAATGCCCCAAGGCATGTCAATATTCATATACATGCAG : CGCCTATTACTTCTGCAGTTGGTGCTAGGGCGGCCAATGGAGATGGAGCACACGGTGAACGTGGTAATGGAACTGATTCTGGCCAAACAAGGGTTCTGCCTGTTGGAAATATAATGGCTACAGCTGTGGCACCAAGGCCTGCTGTTATCTCAGTCTCTAGTATGCCACAGCCTG : GCCAATCAGATGGCCCAAGTGGCCAAGAGCGCTCTACTGCGTCTGGTGCTGAGAATGATACTGTTAGCACTCAACTAGATGAGACATCTGCAAGTGGGATGACTGTGCCTGAGCCTCTACCAGCACACAGTGTTCCCGGGAGAGAGGATAAAATG : AGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAG : AAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG : ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC : GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGTATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAATGTGGG</gDNA_template>
            <first_frame> C  P  S  I  R  A  W  K  D  D  I  D  S  Q  N  G  T  I  T   : C  *  I  F  S  K  C  W  S  C  S  L  H  I  F  H  R  A  E  P  H  N  G  S   : A  F  P  P  S  N  Q  F  T  L  R  *  L  S  C  C  S  T  *  P  R  Y  L  W  R  S  W  D  W  *  C  P  K  A  C  Q  Y  S  Y  T  C  S :   A  Y  Y  F  C  S  W  C  *  G  G  Q  W  R  W  S  T  R  *  T  W  *  W  N  *  F  W  P  N  K  G  S  A  C  W  K  Y  N  G  Y  S  C  G  T  K  A  C  C  Y  L  S  L  *  Y  A  T  A  W :   P  I  R  W  P  K  W  P  R  A  L  Y  C  V  W  C  *  E  *  Y  C  *  H  S  T  R  *  D  I  C  K  W  D  D  C  A  *  A  S  T  S  T  Q  C  S  R  E  R  G  *  N   : E  C  R  S  I  K  R  N  V  S  *  *  A  R  S  F  S  Q  C  R  K  S  S  K  V  *  S  G  V  R  *  S  *  *  I  L  I  C  A  P  W  I  R  A  R  R  F  A  A  *   : E  T  N  *  A  I  C  S  S  W  N  *  C  *  W  F  K  *  Q  Q  S  K  *  T  T  S  K  R  *  A  S  I  F  A  V  S  C  S  A  C  S  Q  G  K  *  A  C  Y  A  F  N  D  T  L  R  *  G  S  Y  G  D  Y  W  L  G  K  P  K  C  *  W  P  V  R  D  S  R  C  N  V  *  C  P  S  E  S  C  F  K  W  F  V  E  W  G  F  T  T  N  W  G  W  L  S  G  S  L  E  E  Y  D  A  A  I  H  S  K  S  S  N  D  E  H  C  K  S  D  C  A  A  D  *  H  P  G  S  W  K  H  V  F  R  A  R  W  W  Y  G  L  V  *  D  V  S  A  N  D  A  N  C  V  S  S  S  W  W  H  L  R  C  A  S  T  N  S  *  Y  C  T  E  A  W  *  E  Y  C  S  K  R  G  N  T  N  H  *  K  R  S   : D  *  S  S  *  G  C  P  R  N  R  E  Q  *  S  T  C  R  D  S  S  F  F  G  S  K  Y  R  I  F  A  S  P  W  K  *  R  S  K  S  G  *  *  T  I  Q  *  R  E  P  S  R   : R  I  H  A  D  A  A  *  *  C  F  S  A  I  Q  G  *  R  G  Q  I  G  N  I  L  N  F  S  S  H  F  L  I  L  F  L  K  N  V  I  I  L  G  S  Q  L  D  R  Q  R  Q  L  M  W  G  E  T  I  I  I  L  F  P  C  V  Y  V  H  T  Y  G  I  V  N  P  V  D  G  N  C  I  F  Y  V  *  S  K  Q  W  Y  H  F  I  L  S  M  W  </first_frame>
            <second_frame>  A  L  L  L  E  L  G  R  T  I  L  T  L  R  M  G  Q  S  P  :  A  E  S  S  V  N  A  G  P  A  V  Y  I  S  S  T  G  P  N  P  I  M  V  Q  :  P  F  P  L  Q  T  S  S  L  F  G  N  S  A  A  V  P  P  N  P  G  T  F  G  A  L  G  I  G  N  A  P  R  H  V  N  I  H  I  H  A   : A  P  I  T  S  A  V  G  A  R  A  A  N  G  D  G  A  H  G  E  R  G  N  G  T  D  S  G  Q  T  R  V  L  P  V  G  N  I  M  A  T  A  V  A  P  R  P  A  V  I  S  V  S  S  M  P  Q  P   : G  Q  S  D  G  P  S  G  Q  E  R  S  T  A  S  G  A  E  N  D  T  V  S  T  Q  L  D  E  T  S  A  S  G  M  T  V  P  E  P  L  P  A  H  S  V  P  G  R  E  D  K  M  :  S  V  G  Q  S  S  E  M  S  H  S  K  P  E  A  S  A  S  V  G  R  A  Q  R  S  S  Q  E  L  G  S  P  D  E  S  S  S  V  P  L  G  L  G  L  G  G  L  Q  P  K  :  K  R  T  K  Q  S  V  A  H  G  I  N  A  D  G  S  S  S  S  N  P  N  E  L  P  Q  R  D  E  R  Q  F  L  Q  S  L  A  A  L  A  A  R  G  N  E  P  A  M  P  S  M  T  H  L  D  R  G  V  M  G  T  I  G  S  G  N  R  N  V  D  G  Q  S  E  I  A  D  A  M  S  S  V  L  Q  S  P  A  L  N  G  L  L  S  G  V  S  Q  Q  T  G  A  G  S  P  D  L  L  R  N  M  M  Q  Q  F  T  Q  S  P  A  M  M  N  T  V  S  Q  I  A  Q  Q  I  D  T  Q  D  L  G  S  M  F  S  G  Q  G  G  G  M  D  L  S  R  M  F  Q  Q  M  M  P  I  V  S  Q  A  L  G  G  I  S  G  V  P  Q  R  I  P  N  I  A  Q  R  L  G  E  N  T  A  V  R  G  A  T  P  T  T  E  N  V  Q  :  I  D  L  H  E  V  A  Q  E  I  E  N  N  S  P  P  V  E  I  L  R  S  L  V  Q  S  T  E  S  L  H  H  H  G  S  S  D  L  S  L  A  D  E  L  S  S  E  E  N  L  A  D  :  E  F  M  Q  M  L  R  N  D  V  S  Q  R  F  K  D  K  E  G  K  *  G  I  Y  L  I  F  L  L  I  F  *  Y  Y  F  *  R  M  S  S  F  W  V  L  N  *  T  D  R  D  S  *  C  G  G  K  P  L  L  Y  Y  S  R  V  Y  M  Y  I  P  M  E  *  L  I  Q  W  M  G  T  V  F  S  M  F  N  Q  N  N  G  T  I  L  F  Y  Q  C  G </second_frame>
            <third_frame>   P  F  Y  *  S  L  E  G  R  Y  *  L  S  E  W  D  N  H  L :   L  N  L  Q  *  M  L  V  L  Q  F  T  Y  L  P  P  G  R  T  P  *  W  F  S :   L  S  P  F  K  P  V  H  S  S  V  T  Q  L  L  F  H  L  T  P  V  P  L  A  L  L  G  L  V  M  P  Q  G  M  S  I  F  I  Y  M  Q  :  R  L  L  L  L  Q  L  V  L  G  R  P  M  E  M  E  H  T  V  N  V  V  M  E  L  I  L  A  K  Q  G  F  C  L  L  E  I  *  W  L  Q  L  W  H  Q  G  L  L  L  S  Q  S  L  V  C  H  S  L  :  A  N  Q  M  A  Q  V  A  K  S  A  L  L  R  L  V  L  R  M  I  L  L  A  L  N  *  M  R  H  L  Q  V  G  *  L  C  L  S  L  Y  Q  H  T  V  F  P  G  E  R  I  K  * :   V  *  V  N  Q  A  K  C  L  I  V  S  Q  K  L  Q  P  V  *  E  E  L  K  G  L  V  R  S  *  V  V  L  M  N  P  H  L  C  P  L  D  *  G  S  E  V  C  S  L  R :   N  E  L  S  N  L  *  L  M  E  L  M  L  M  V  Q  V  A  A  I  Q  M  N  Y  L  K  E  M  S  V  N  F  C  S  L  L  Q  R  L  Q  P  G  E  M  S  L  L  C  L  Q  *  H  T  *  I  G  E  L  W  G  L  L  A  R  E  T  E  M  L  M  A  S  Q  R  *  Q  M  Q  C  L  V  S  F  R  V  L  L  *  M  V  C  *  V  G  F  H  N  K  L  G  L  A  L  R  I  S  *  G  I  *  C  S  N  S  L  K  V  Q  Q  *  *  T  L  *  V  R  L  R  S  R  L  T  P  R  I  L  E  A  C  F  P  G  K  V  V  V  W  T  C  L  G  C  F  S  K  *  C  Q  L  C  L  K  L  L  V  A  S  Q  V  C  L  N  E  F  L  I  L  H  R  G  L  V  R  I  L  Q  *  E  G  Q  H  Q  P  L  K  T  F  R :   L  I  F  M  R  L  P  K  K  S  R  T  I  V  H  L  *  R  F  F  V  L  W  F  K  V  Q  N  L  C  I  T  M  E  V  A  I  *  V  W  L  M  N  Y  P  V  K  R  T  *  P  T :   N  S  C  R  C  C  V  M  M  F  L  S  D  S  R  I  K  R  A  N  R  E  Y  T  *  F  F  F  S  F  S  D  I  I  S  K  E  C  H  H  F  G  F  S  I  R  Q  T  E  T  A  D  V  G  G  N  H  Y  Y  T  I  P  V  C  I  C  T  Y  L  W  N  S  *  S  S  G  W  E  L  Y  F  L  C  L  I  K  T  M  V  P  F  Y  S  I  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46182" stop="46238"/>
                    <exon start="46321" stop="46392"/>
                    <exon start="46505" stop="46628"/>
                    <exon start="46751" stop="46924"/>
                    <exon start="47091" stop="47245"/>
                    <exon start="47330" stop="47479"/>
                    <exon start="48389" stop="48982"/>
                    <exon start="49066" stop="49221"/>
                    <exon start="49303" stop="49365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1542</number_coding_nucleotides>
                  <number_encoded_amino_acids>514</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLLELGRTILTLRMGQSPAESSVNAGPAVYISSTGPNPIMVQPFPLQTSSLFGNSAAVPPNPGTFGALGIGNAPRHVNIHIHAAPITSAVGARAANGDGAHGERGNGTDSGQTRVLPVGNIMATAVAPRPAVISVSSMPQPGQSDGPSGQERSTASGAENDTVSTQLDETSASGMTVPEPLPAHSVPGREDKMSVGQSSEMSHSKPEASASVGRAQRSSQELGSPDESSSVPLGLGLGGLQPKKRTKQSVAHGINADGSSSSNPNELPQRDERQFLQSLAALAARGNEPAMPSMTHLDRGVMGTIGSGNRNVDGQSEIADAMSSVLQSPALNGLLSGVSQQTGAGSPDLLRNMMQQFTQSPAMMNTVSQIAQQIDTQDLGSMFSGQGGGMDLSRMFQQMMPIVSQALGGISGVPQRIPNIAQRLGENTAVRGATPTTENVQIDLHEVAQEIENNSPPVEILRSLVQSTESLHHHGSSDLSLADELSSEENLADEFMQMLRNDVSQRFKDKEGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49353" stop="49556"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQIGNILNFSSHFLILFLKNVIILGSQLDRQRQLMWGETIIILFPCVYVHTYGIVNPVDGNCIFYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47327" e_stop="47479"/>
            <exon e_start="48389" e_stop="48982"/>
            <exon e_start="49066" e_stop="49221"/>
            <exon e_start="49303" e_stop="49593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.768" e_score="0.980"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="0.400" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="47327" e_stop="47479" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.768">
            <gDNA_intron_boundary i_start="47480" i_stop="48388" i_length="909"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="48389" e_stop="48982" e_length="594"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="48983" i_stop="49065" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49066" e_stop="49221" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.400" acc_prob="0.975">
            <gDNA_intron_boundary i_start="49222" i_stop="49302" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="49303" e_stop="49593" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47327" stop="47479"/>
              <exon start="48389" stop="48982"/>
              <exon start="49066" stop="49093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48443" stop="48944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48497" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48776" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48777" stop="48982"/>
              <exon start="49066" stop="49221"/>
              <exon start="49303" stop="49407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAGTGTAGGTCAATCAAGCGAAATGTCTCATAGTAAGCCAGAAGCTTCAGCCAGTGTAGGAAGAGCTCAAAGGTCTAGTCAGGAGTTAGGTAGTCCTGATGAATCCTCATCTGTGCCCCTTGGATTAGGGCTCGGAGGTTTGCAGCCTAAG : AAACGAACTAAGCAATCTGTAGCTCATGGAATTAATGCTGATGGTTCAAGTAGCAGCAATCCAAATGAACTACCTCAAAGAGATGAGCGTCAATTTTTGCAGTCTCTTGCAGCGCTTGCAGCCAGGGGAAATGAGCCTGCTATGCCTTCAATGACACACTTAGATAGGGGAGTTATGGGGACTATTGGCTCGGGAAACCGAAATGTTGATGGCCAGTCAGAGATAGCAGATGCAATGTCTAGTGTCCTTCAGAGTCCTGCTTTAAATGGTTTGTTGAGTGGGGTTTCACAACAAACTGGGGCTGGCTCTCCGGATCTCTTGAGGAATATGATGCAGCAATTCACTCAAAGTCCAGCAATGATGAACACTGTAAGTCAGATTGCGCAGCAGATTGACACCCAGGATCTTGGAAGCATGTTTTCCGGGCAAGGTGGTGGTATGGACTTGTCTAGGATGTTTCAGCAAATGATGCCAATTGTGTCTCAAGCTCTTGGTGGCATCTCAGGTGTGCCTCAACGAATTCCTAATATTGCACAGAGGCTTGGTGAGAATACTGCAGTAAGAGGGGCAACACCAACCACTGAAAACGTTCAG : ATTGATCTTCATGAGGTTGCCCAAGAAATCGAGAACAATAGTCCACCTGTAGAGATTCTTCGTTCTTTGGTTCAAAGTACAGAATCTTTGCATCACCATGGAAGTAGCGATCTAAGTCTGGCTGATGAACTATCCAGTGAAGAGAACCTAGCCGAC : GAATTCATGCAGATGCTGCGTAATGATGTTTCTCAGCGATTCAAGGATAAAGAGGGCAAATAGGGAATATACTTAATTTTTCTTCTCATTTTCTGATATTATTTCTAAAGAATGTCATCATTTTGGGTTCTCAATTAGACAGACAGAGACAGCTGATGTGGGGGGAAACCATTATTATACTATTCCCGTGTGTATATGTACATACCTATGGAATAGTTAATCCAGTGGATGGGAACTGTATTTTCTATGTTTAATCAAAACAATGGTACCATTTTATTCTATCAATGTGGG</gDNA_template>
            <first_frame> Q  S  V  G  Q  S  S  E  M  S  H  S  K  P  E  A  S  A  S  V  G  R  A  Q  R  S  S  Q  E  L  G  S  P  D  E  S  S  S  V  P  L  G  L  G  L  G  G  L  Q  P  K  :  K  R  T  K  Q  S  V  A  H  G  I  N  A  D  G  S  S  S  S  N  P  N  E  L  P  Q  R  D  E  R  Q  F  L  Q  S  L  A  A  L  A  A  R  G  N  E  P  A  M  P  S  M  T  H  L  D  R  G  V  M  G  T  I  G  S  G  N  R  N  V  D  G  Q  S  E  I  A  D  A  M  S  S  V  L  Q  S  P  A  L  N  G  L  L  S  G  V  S  Q  Q  T  G  A  G  S  P  D  L  L  R  N  M  M  Q  Q  F  T  Q  S  P  A  M  M  N  T  V  S  Q  I  A  Q  Q  I  D  T  Q  D  L  G  S  M  F  S  G  Q  G  G  G  M  D  L  S  R  M  F  Q  Q  M  M  P  I  V  S  Q  A  L  G  G  I  S  G  V  P  Q  R  I  P  N  I  A  Q  R  L  G  E  N  T  A  V  R  G  A  T  P  T  T  E  N  V  Q  :  I  D  L  H  E  V  A  Q  E  I  E  N  N  S  P  P  V  E  I  L  R  S  L  V  Q  S  T  E  S  L  H  H  H  G  S  S  D  L  S  L  A  D  E  L  S  S  E  E  N  L  A  D  :  E  F  M  Q  M  L  R  N  D  V  S  Q  R  F  K  D  K  E  G  K  *  G  I  Y  L  I  F  L  L  I  F  *  Y  Y  F  *  R  M  S  S  F  W  V  L  N  *  T  D  R  D  S  *  C  G  G  K  P  L  L  Y  Y  S  R  V  Y  M  Y  I  P  M  E  *  L  I  Q  W  M  G  T  V  F  S  M  F  N  Q  N  N  G  T  I  L  F  Y  Q  C  G </first_frame>
            <second_frame>  R  V  *  V  N  Q  A  K  C  L  I  V  S  Q  K  L  Q  P  V  *  E  E  L  K  G  L  V  R  S  *  V  V  L  M  N  P  H  L  C  P  L  D  *  G  S  E  V  C  S  L  R :   N  E  L  S  N  L  *  L  M  E  L  M  L  M  V  Q  V  A  A  I  Q  M  N  Y  L  K  E  M  S  V  N  F  C  S  L  L  Q  R  L  Q  P  G  E  M  S  L  L  C  L  Q  *  H  T  *  I  G  E  L  W  G  L  L  A  R  E  T  E  M  L  M  A  S  Q  R  *  Q  M  Q  C  L  V  S  F  R  V  L  L  *  M  V  C  *  V  G  F  H  N  K  L  G  L  A  L  R  I  S  *  G  I  *  C  S  N  S  L  K  V  Q  Q  *  *  T  L  *  V  R  L  R  S  R  L  T  P  R  I  L  E  A  C  F  P  G  K  V  V  V  W  T  C  L  G  C  F  S  K  *  C  Q  L  C  L  K  L  L  V  A  S  Q  V  C  L  N  E  F  L  I  L  H  R  G  L  V  R  I  L  Q  *  E  G  Q  H  Q  P  L  K  T  F  R :   L  I  F  M  R  L  P  K  K  S  R  T  I  V  H  L  *  R  F  F  V  L  W  F  K  V  Q  N  L  C  I  T  M  E  V  A  I  *  V  W  L  M  N  Y  P  V  K  R  T  *  P  T :   N  S  C  R  C  C  V  M  M  F  L  S  D  S  R  I  K  R  A  N  R  E  Y  T  *  F  F  F  S  F  S  D  I  I  S  K  E  C  H  H  F  G  F  S  I  R  Q  T  E  T  A  D  V  G  G  N  H  Y  Y  T  I  P  V  C  I  C  T  Y  L  W  N  S  *  S  S  G  W  E  L  Y  F  L  C  L  I  K  T  M  V  P  F  Y  S  I  N  V   </second_frame>
            <third_frame>   E  C  R  S  I  K  R  N  V  S  *  *  A  R  S  F  S  Q  C  R  K  S  S  K  V  *  S  G  V  R  *  S  *  *  I  L  I  C  A  P  W  I  R  A  R  R  F  A  A  *   : E  T  N  *  A  I  C  S  S  W  N  *  C  *  W  F  K  *  Q  Q  S  K  *  T  T  S  K  R  *  A  S  I  F  A  V  S  C  S  A  C  S  Q  G  K  *  A  C  Y  A  F  N  D  T  L  R  *  G  S  Y  G  D  Y  W  L  G  K  P  K  C  *  W  P  V  R  D  S  R  C  N  V  *  C  P  S  E  S  C  F  K  W  F  V  E  W  G  F  T  T  N  W  G  W  L  S  G  S  L  E  E  Y  D  A  A  I  H  S  K  S  S  N  D  E  H  C  K  S  D  C  A  A  D  *  H  P  G  S  W  K  H  V  F  R  A  R  W  W  Y  G  L  V  *  D  V  S  A  N  D  A  N  C  V  S  S  S  W  W  H  L  R  C  A  S  T  N  S  *  Y  C  T  E  A  W  *  E  Y  C  S  K  R  G  N  T  N  H  *  K  R  S   : D  *  S  S  *  G  C  P  R  N  R  E  Q  *  S  T  C  R  D  S  S  F  F  G  S  K  Y  R  I  F  A  S  P  W  K  *  R  S  K  S  G  *  *  T  I  Q  *  R  E  P  S  R   : R  I  H  A  D  A  A  *  *  C  F  S  A  I  Q  G  *  R  G  Q  I  G  N  I  L  N  F  S  S  H  F  L  I  L  F  L  K  N  V  I  I  L  G  S  Q  L  D  R  Q  R  Q  L  M  W  G  E  T  I  I  I  L  F  P  C  V  Y  V  H  T  Y  G  I  V  N  P  V  D  G  N  C  I  F  Y  V  *  S  K  Q  W  Y  H  F  I  L  S  M  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47327" stop="47479"/>
                    <exon start="48389" stop="48982"/>
                    <exon start="49066" stop="49221"/>
                    <exon start="49303" stop="49365"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>963</number_coding_nucleotides>
                  <number_encoded_amino_acids>321</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSVGQSSEMSHSKPEASASVGRAQRSSQELGSPDESSSVPLGLGLGGLQPKKRTKQSVAHGINADGSSSSNPNELPQRDERQFLQSLAALAARGNEPAMPSMTHLDRGVMGTIGSGNRNVDGQSEIADAMSSVLQSPALNGLLSGVSQQTGAGSPDLLRNMMQQFTQSPAMMNTVSQIAQQIDTQDLGSMFSGQGGGMDLSRMFQQMMPIVSQALGGISGVPQRIPNIAQRLGENTAVRGATPTTENVQIDLHEVAQEIENNSPPVEILRSLVQSTESLHHHGSSDLSLADELSSEENLADEFMQMLRNDVSQRFKDKEGK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49353" stop="49556"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGQIGNILNFSSHFLILFLKNVIILGSQLDRQRQLMWGETIIILFPCVYVHTYGIVNPVDGNCIFYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50727" PGL_stop="51682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50727" e_stop="50917"/>
            <exon e_start="51255" e_stop="51513"/>
            <exon e_start="51605" e_stop="51682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.518" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.844" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50727" e_stop="50917" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.518" acc_prob="0.999">
            <gDNA_intron_boundary i_start="50918" i_stop="51254" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51255" e_stop="51513" e_length="259"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.844">
            <gDNA_intron_boundary i_start="51514" i_stop="51604" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51605" e_stop="51682" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50727" stop="50917"/>
              <exon start="51255" stop="51513"/>
              <exon start="51605" stop="51682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331573" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTTTAGCACTTTTTGTAAATGTTGCTAAAGCTTGCGGCGACAATTTACATAAAAGCCGCTTTAACATTCTTTGCTAATGTGTATATTTATTGCCGCTATTGTTGTTATAGTGCTGTGATGAATCCAGATATTTTGAGGACTAAATCATCGAATTGAGTGTCCCTTTGTCGAAAATACTGTATATATCAG : CTGCAGTGGCAAGAAAAGCAGGAGAACCACTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCACATGAAGTTCGGCTCAAAATCATTTGCACTTCTCTCTGTCATACCGACATTACCTTATGGAAGTTGAAAGTATGGAACTTTTATCTCCCCCGAGAATCGATTGTTTATTAACTTTTGTATCAACTATTTCTTGCTTCTTGTAAGGAATTTCCTGGCTGCTTTCCAAGAATCTTAGGCCATGAAGCTTTCGG : GGTTGTGGAGAGTGTTGGAGAAGATGTTGATGAGTTGAAAGAAGGAGATTCAGTTGTACCGATATTTTTGCCTGACTG</gDNA_template>
            <first_frame> Y  F  S  T  F  C  K  C  C  *  S  L  R  R  Q  F  T  *  K  P  L  *  H  S  L  L  M  C  I  F  I  A  A  I  V  V  I  V  L  *  *  I  Q  I  F  *  G  L  N  H  R  I  E  C  P  F  V  E  N  T  V  Y  I  S :   C  S  G  K  K  S  R  R  T  T  G  D  R  G  S  D  C  G  S  S  *  S  T  *  S  S  A  Q  N  H  L  H  F  S  L  S  Y  R  H  Y  L  M  E  V  E  S  M  E  L  L  S  P  P  R  I  D  C  L  L  T  F  V  S  T  I  S  C  F  L  *  G  I  S  W  L  L  S  K  N  L  R  P  *  S  F  R  :  G  C  G  E  C  W  R  R  C  *  *  V  E  R  R  R  F  S  C  T  D  I  F  A  *  L </first_frame>
            <second_frame>  I  L  A  L  F  V  N  V  A  K  A  C  G  D  N  L  H  K  S  R  F  N  I  L  C  *  C  V  Y  L  L  P  L  L  L  L  *  C  C  D  E  S  R  Y  F  E  D  *  I  I  E  L  S  V  P  L  S  K  I  L  Y  I  S   : A  A  V  A  R  K  A  G  E  P  L  V  I  E  E  V  I  V  A  P  P  K  A  H  E  V  R  L  K  I  I  C  T  S  L  C  H  T  D  I  T  L  W  K  L  K  V  W  N  F  Y  L  P  R  E  S  I  V  Y  *  L  L  Y  Q  L  F  L  A  S  C  K  E  F  P  G  C  F  P  R  I  L  G  H  E  A  F  G :   V  V  E  S  V  G  E  D  V  D  E  L  K  E  G  D  S  V  V  P  I  F  L  P  D   </second_frame>
            <third_frame>   F  *  H  F  L  *  M  L  L  K  L  A  A  T  I  Y  I  K  A  A  L  T  F  F  A  N  V  Y  I  Y  C  R  Y  C  C  Y  S  A  V  M  N  P  D  I  L  R  T  K  S  S  N  *  V  S  L  C  R  K  Y  C  I  Y  Q  :  L  Q  W  Q  E  K  Q  E  N  H  W  *  *  R  K  *  L  W  L  L  L  K  H  M  K  F  G  S  K  S  F  A  L  L  S  V  I  P  T  L  P  Y  G  S  *  K  Y  G  T  F  I  S  P  E  N  R  L  F  I  N  F  C  I  N  Y  F  L  L  L  V  R  N  F  L  A  A  F  Q  E  S  *  A  M  K  L  S   : G  L  W  R  V  L  E  K  M  L  M  S  *  K  K  E  I  Q  L  Y  R  Y  F  C  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50872" stop="50917"/>
                    <exon start="51255" stop="51433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIELSVPLSKILYISAAVARKAGEPLVIEEVIVAPPKAHEVRLKIICTSLCHTDITLWKLKVWNFYLPRESIVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="62923" PGL_stop="59836"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62923" e_stop="62503"/>
            <exon e_start="62286" e_stop="61566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62923" e_stop="62503" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="62286" e_stop="61566" e_length="721"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62923" stop="62503"/>
              <exon start="62286" stop="61863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62922" stop="62503"/>
              <exon start="62286" stop="61886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62918" stop="62503"/>
              <exon start="62286" stop="61805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62859" stop="62503"/>
              <exon start="62286" stop="62158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62839" stop="62503"/>
              <exon start="62286" stop="61778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62829" stop="62503"/>
              <exon start="62286" stop="61739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62820" stop="62503"/>
              <exon start="62286" stop="61705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62819" stop="62503"/>
              <exon start="62286" stop="61696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62819" stop="62503"/>
              <exon start="62286" stop="61797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62819" stop="62503"/>
              <exon start="62286" stop="61800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62816" stop="62503"/>
              <exon start="62286" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62816" stop="62503"/>
              <exon start="62286" stop="61696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62816" stop="62503"/>
              <exon start="62286" stop="61706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62816" stop="62503"/>
              <exon start="62286" stop="61706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62815" stop="62503"/>
              <exon start="62286" stop="61712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62815" stop="62503"/>
              <exon start="62286" stop="61727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61732"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62813" stop="62503"/>
              <exon start="62286" stop="61806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62809" stop="62503"/>
              <exon start="62286" stop="61718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62805" stop="62503"/>
              <exon start="62286" stop="61688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62805" stop="62503"/>
              <exon start="62286" stop="61693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62801" stop="62503"/>
              <exon start="62286" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62800" stop="62503"/>
              <exon start="62286" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62503"/>
              <exon start="62286" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62503"/>
              <exon start="62286" stop="61874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62798" stop="62503"/>
              <exon start="62286" stop="61957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62797" stop="62503"/>
              <exon start="62286" stop="61810"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62797" stop="62532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62795" stop="62503"/>
              <exon start="62286" stop="61840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="62503"/>
              <exon start="62286" stop="62087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62792" stop="62503"/>
              <exon start="62286" stop="62100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62777" stop="62503"/>
              <exon start="62286" stop="62139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62775" stop="62503"/>
              <exon start="62286" stop="62230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62774" stop="62503"/>
              <exon start="62286" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62751" stop="62503"/>
              <exon start="62286" stop="61679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62715" stop="62503"/>
              <exon start="62286" stop="62038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62662" stop="62503"/>
              <exon start="62286" stop="61698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62637" stop="62503"/>
              <exon start="62286" stop="61863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62595" stop="62503"/>
              <exon start="62286" stop="61865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62592" stop="62503"/>
              <exon start="62286" stop="61894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62544" stop="62503"/>
              <exon start="62286" stop="61566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62527" stop="62503"/>
              <exon start="62286" stop="61705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261910" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62526" stop="62503"/>
              <exon start="62286" stop="61738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62525" stop="62503"/>
              <exon start="62286" stop="61725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62525" stop="62503"/>
              <exon start="62286" stop="61764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62525" stop="62503"/>
              <exon start="62286" stop="61855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62519" stop="62503"/>
              <exon start="62286" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62516" stop="62503"/>
              <exon start="62286" stop="61848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62244" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62240" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62238" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62237" stop="61728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62233" stop="61695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256312" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62218" stop="61693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="61670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="61765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="61866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62205" stop="61789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62200" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62157" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250528" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62123" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62094" stop="61827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62046" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62041" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62024" stop="61690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62019" stop="61655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62007" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62005" stop="61803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61994" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358229" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61985" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252258" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61982" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61922" stop="61566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61851" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTCCTTTTTTTTTATTACTATATCGAAAATAAAAAAATCTTAATCAGCGTAACGTCCGTGTTTGTAATTGCTATAAAAAGCGCACCAAGTCTCATATATTTCAATCACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC : AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</gDNA_template>
            <first_frame> N  S  F  F  F  I  T  I  S  K  I  K  K  S  *  S  A  *  R  P  C  L  *  L  L  *  K  A  H  Q  V  S  Y  I  S  I  T  S  N  S  I  F  K  L  S  L  V  D  N  I  F  L  I  E  K  K  K  K  K  Y  G  *  S  I  R  T  E  Q  G  I  R  *  R  D  C  W  Y  Q  R  G  S  Y  *  S  W  F  V  *  F  H  W  K  K  R  R  G  K  T  K  S  C  S  *  R  R  G  N  F  I  *  V  V  *  K  S  *  R  K  *  R  S  G  T  Q  G  G  G  K  E  T  S  S  I  K  *  Q  L  *  *  L   : Q  *  *  G  G  R  N  W  R  G  W  T  E  D  Q  E  E  E  K  E  G  I  E  G  *  D  *  G  K  N  I  W  *  S  Q  G  R  I  E  S  R  G  Y  L  S  S  S  *  E  I  R  G  N  R  G  E  K  R  I  S  R  Q  N  *  G  E  I  A  R  W  R  A  *  E  D  G  G  S  G  G  A  T  T  T  T  T  G  C  G  G  A  *  G  G  G  E  G  E  E  G  I  F  G  Q  N  *  G  E  I  T  R  I  P  L  K  G  *  R  G  K  G  E  G  K  R  L  N  E  M  K  C  F  F  N  F  T  F  G  M  L  *  L  C  F  C  V  V  L  V  F  K  C  F  S  F  P  S  L  L  F  F  L  D  S  E  G  *  L  L  V  L  Y  L  I  F  L  Y  V  S  A  Y  V  C  A  L  C  V  *  S  L  I  I  W  I  C  K  M  Q  L  I  L  S  L  L  T  S  L  F  Y  G  L  V  V  S  F  P  T  L  L  Y  E  D  V  L  F  K  T  Y  R  V  I  I  Y  K  C  K  S  *  R  Y   </first_frame>
            <second_frame>  T  P  F  F  L  L  L  Y  R  K  *  K  N  L  N  Q  R  N  V  R  V  C  N  C  Y  K  K  R  T  K  S  H  I  F  Q  S  H  P  I  Q  Y  S  N  F  H  L  L  I  I  S  F  *  L  K  K  R  R  R  S  M  A  D  Q  Y  E  Q  N  K  A  S  V  E  E  T  V  G  T  N  V  E  A  T  D  R  G  L  F  D  F  I  G  K  K  E  E  E  K  P  S  H  A  H  E  E  E  A  I  S  S  E  L  S  E  K  V  N  V  S  E  E  V  E  P  K  E  E  E  K  K  L  H  R  S  N  S  S  S  S  S  S  :  S  D  E  E  E  E  I  G  E  D  G  Q  K  I  K  K  K  K  K  K  G  L  K  D  K  I  K  E  K  I  S  G  D  H  K  E  E  S  K  A  E  D  T  S  V  P  V  E  K  Y  E  E  T  E  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  G  G  H  K  K  T  E  E  V  A  A  P  P  P  P  P  P  A  A  V  E  H  E  A  E  G  K  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  Y  H  S  K  A  E  E  E  K  E  K  E  K  D  *  M  K  *  N  V  F  L  I  L  L  L  G  C  Y  D  C  V  S  V  L  F  W  F  L  S  V  F  H  F  L  H  F  C  F  F  W  I  L  K  D  N  C  *  Y  C  I  *  Y  F  C  M  *  V  H  M  Y  V  P  Y  V  Y  E  V  *  *  Y  G  F  V  K  C  S  *  F  Y  P  Y  *  L  L  C  F  M  V  *  L  F  H  F  Q  L  C  Y  M  K  T  Y  C  S  K  H  I  E  L  L  Y  I  N  A  N  L  R  D  I  </second_frame>
            <third_frame>   L  L  F  F  Y  Y  Y  I  E  N  K  K  I  L  I  S  V  T  S  V  F  V  I  A  I  K  S  A  P  S  L  I  Y  F  N  H  I  Q  F  N  I  Q  T  F  T  C  *  *  Y  L  F  D  *  K  K  E  E  E  V  W  L  I  N  T  N  R  T  R  H  P  L  K  R  L  L  V  P  T  W  K  L  L  I  V  V  C  L  I  S  L  E  K  K  K  R  K  N  Q  V  M  L  M  K  K  R  Q  F  H  L  S  C  L  K  K  L  T  *  V  K  K  W  N  P  R  R  R  K  R  N  F  I  D  Q  I  A  A  L  V  A  P :   V  M  R  R  K  K  L  E  R  M  D  R  R  S  R  R  R  K  R  R  D  *  R  I  R  L  R  K  K  Y  L  V  I  T  R  K  N  R  K  Q  R  I  P  Q  F  Q  L  R  N  T  R  K  Q  R  R  K  K  D  F  *  T  K  L  R  R  N  C  Q  V  A  G  I  R  R  R  R  K  W  R  R  H  H  H  H  H  R  L  R  W  S  M  R  R  R  G  R  R  R  R  D  F  W  T  K  L  R  R  N  Y  Q  D  T  T  Q  R  L  K  R  K  R  R  R  K  K  T  K  *  N  E  M  F  F  *  F  Y  F  W  D  V  M  I  V  F  L  C  C  F  G  F  *  V  F  F  I  S  F  T  F  V  F  F  G  F  *  R  I  I  V  S  T  V  F  D  I  S  V  C  K  C  I  C  M  C  L  M  C  M  K  F  D  N  M  D  L  *  N  A  V  D  F  I  L  I  D  F  F  V  L  W  F  S  C  F  I  S  N  S  V  I  *  R  R  I  V  Q  N  I  S  S  Y  Y  I  *  M  Q  I  L  E  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62766" stop="62503"/>
                    <exon start="62286" stop="61909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRRRSMADQYEQNKASVEETVGTNVEATDRGLFDFIGKKEEEKPSHAHEEEAISSELSEKVNVSEEVEPKEEEKKLHRSNSSSSSSSDEEEEIGEDGQKIKKKKKKGLKDKIKEKISGDHKEESKAEDTSVPVEKYEETEEKKGFLDKIKEKLPGGGHKKTEEVAAPPPPPPAAVEHEAEGKEKKGFLDKIKEKLPGYHSKAEEEKEKEKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="62815" e_stop="61566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="62815" e_stop="61566" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62815" stop="62010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62808" stop="62070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62797" stop="62532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62244" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269928" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62240" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62238" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62237" stop="61728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62233" stop="61695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256312" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62218" stop="61693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="61670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="61765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62207" stop="61866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62205" stop="61789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62200" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62157" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250528" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62123" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62122" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62094" stop="61827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62046" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250317" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62041" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62024" stop="61690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62019" stop="61655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62007" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62005" stop="61803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61994" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358229" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61985" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252258" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61982" stop="61700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61922" stop="61566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278171" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61851" stop="61686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCCGTAAGTCTCTCTTTCGTTCATCATTAATATTTACGTCAAATCAATAAATATAACATACGCCTTTTATGATGATACATATATTATACTTTTACACTATTTGTTTTCTCAACAAAGAGTCGAGTAAATTTACCGTTTACTTTTTCTAGCGGGTATGAATAAATTATAGGTGATCATTGATATGTTGTACGTAGATTATATATGTTGATTGATTTGCAGAGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAATATCTGGTGATCACAAGGAAGAATCGAAAGCAGAGGATACCTCAGTTCCAGTTGAGAAATACGAGGAAACAGAGGAGAAAAAAGGATTTCTAGACAAAATTAAGGAGAAATTGCCAGGTGGCGGGCATAAGAAGACGGAGGAAGTGGCGGCGCCACCACCACCACCACCGGCTGCGGTGGAGCATGAGGCGGAGGGGAAGGAGAAGAAGGGATTTTTGGACAAAATTAAGGAGAAATTACCAGGATACCACTCAAAGGCTGAAGAGGAAAAGGAGAAGGAAAAAGACTAAATGAAATGAAATGTTTTTTTAATTTTACTTTTGGGATGTTATGATTGTGTTTCTGTGTTGTTTTGGTTTTTAAGTGTTTTTCATTTCCTTCACTTTTGTTTTTTTTGGATTCTGAAGGATAATTGTTAGTACTGTATTTGATATTTCTGTATGTAAGTGCATATGTATGTGCCTTATGTGTATGAAGTTTGATAATATGGATTTGTAAAATGCAGTTGATTTTATCCTTATTGACTTCTTTGTTTTATGGTTTAGTTGTTTCATTTCCAACTCTGTTATATGAAGACGTATTGTTCAAAACATATCGAGTTATTATATATAAATGCAAATCTTAGAGATATTA</gDNA_template>
            <first_frame> T  S  N  S  I  F  K  L  S  L  V  D  N  I  F  L  I  E  K  K  K  K  K  Y  G  *  S  I  R  T  E  Q  G  I  R  *  R  D  C  W  Y  Q  R  G  S  Y  *  S  W  F  V  *  F  H  W  K  K  R  R  G  K  T  K  S  C  S  *  R  R  G  N  F  I  *  V  V  *  K  S  *  R  K  *  R  S  G  T  Q  G  G  G  K  E  T  S  S  I  K  *  Q  L  *  *  L  R  K  S  L  F  R  S  S  L  I  F  T  S  N  Q  *  I  *  H  T  P  F  M  M  I  H  I  L  Y  F  Y  T  I  C  F  L  N  K  E  S  S  K  F  T  V  Y  F  F  *  R  V  *  I  N  Y  R  *  S  L  I  C  C  T  *  I  I  Y  V  D  *  F  A  E  *  *  G  G  R  N  W  R  G  W  T  E  D  Q  E  E  E  K  E  G  I  E  G  *  D  *  G  K  N  I  W  *  S  Q  G  R  I  E  S  R  G  Y  L  S  S  S  *  E  I  R  G  N  R  G  E  K  R  I  S  R  Q  N  *  G  E  I  A  R  W  R  A  *  E  D  G  G  S  G  G  A  T  T  T  T  T  G  C  G  G  A  *  G  G  G  E  G  E  E  G  I  F  G  Q  N  *  G  E  I  T  R  I  P  L  K  G  *  R  G  K  G  E  G  K  R  L  N  E  M  K  C  F  F  N  F  T  F  G  M  L  *  L  C  F  C  V  V  L  V  F  K  C  F  S  F  P  S  L  L  F  F  L  D  S  E  G  *  L  L  V  L  Y  L  I  F  L  Y  V  S  A  Y  V  C  A  L  C  V  *  S  L  I  I  W  I  C  K  M  Q  L  I  L  S  L  L  T  S  L  F  Y  G  L  V  V  S  F  P  T  L  L  Y  E  D  V  L  F  K  T  Y  R  V  I  I  Y  K  C  K  S  *  R  Y   </first_frame>
            <second_frame>  H  P  I  Q  Y  S  N  F  H  L  L  I  I  S  F  *  L  K  K  R  R  R  S  M  A  D  Q  Y  E  Q  N  K  A  S  V  E  E  T  V  G  T  N  V  E  A  T  D  R  G  L  F  D  F  I  G  K  K  E  E  E  K  P  S  H  A  H  E  E  E  A  I  S  S  E  L  S  E  K  V  N  V  S  E  E  V  E  P  K  E  E  E  K  K  L  H  R  S  N  S  S  S  S  S  S  V  S  L  S  F  V  H  H  *  Y  L  R  Q  I  N  K  Y  N  I  R  L  L  *  *  Y  I  Y  Y  T  F  T  L  F  V  F  S  T  K  S  R  V  N  L  P  F  T  F  S  S  G  Y  E  *  I  I  G  D  H  *  Y  V  V  R  R  L  Y  M  L  I  D  L  Q  S  D  E  E  E  E  I  G  E  D  G  Q  K  I  K  K  K  K  K  K  G  L  K  D  K  I  K  E  K  I  S  G  D  H  K  E  E  S  K  A  E  D  T  S  V  P  V  E  K  Y  E  E  T  E  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  G  G  H  K  K  T  E  E  V  A  A  P  P  P  P  P  P  A  A  V  E  H  E  A  E  G  K  E  K  K  G  F  L  D  K  I  K  E  K  L  P  G  Y  H  S  K  A  E  E  E  K  E  K  E  K  D  *  M  K  *  N  V  F  L  I  L  L  L  G  C  Y  D  C  V  S  V  L  F  W  F  L  S  V  F  H  F  L  H  F  C  F  F  W  I  L  K  D  N  C  *  Y  C  I  *  Y  F  C  M  *  V  H  M  Y  V  P  Y  V  Y  E  V  *  *  Y  G  F  V  K  C  S  *  F  Y  P  Y  *  L  L  C  F  M  V  *  L  F  H  F  Q  L  C  Y  M  K  T  Y  C  S  K  H  I  E  L  L  Y  I  N  A  N  L  R  D  I  </second_frame>
            <third_frame>   I  Q  F  N  I  Q  T  F  T  C  *  *  Y  L  F  D  *  K  K  E  E  E  V  W  L  I  N  T  N  R  T  R  H  P  L  K  R  L  L  V  P  T  W  K  L  L  I  V  V  C  L  I  S  L  E  K  K  K  R  K  N  Q  V  M  L  M  K  K  R  Q  F  H  L  S  C  L  K  K  L  T  *  V  K  K  W  N  P  R  R  R  K  R  N  F  I  D  Q  I  A  A  L  V  A  P  *  V  S  L  S  F  I  I  N  I  Y  V  K  S  I  N  I  T  Y  A  F  Y  D  D  T  Y  I  I  L  L  H  Y  L  F  S  Q  Q  R  V  E  *  I  Y  R  L  L  F  L  A  G  M  N  K  L  *  V  I  I  D  M  L  Y  V  D  Y  I  C  *  L  I  C  R  V  M  R  R  K  K  L  E  R  M  D  R  R  S  R  R  R  K  R  R  D  *  R  I  R  L  R  K  K  Y  L  V  I  T  R  K  N  R  K  Q  R  I  P  Q  F  Q  L  R  N  T  R  K  Q  R  R  K  K  D  F  *  T  K  L  R  R  N  C  Q  V  A  G  I  R  R  R  R  K  W  R  R  H  H  H  H  H  R  L  R  W  S  M  R  R  R  G  R  R  R  R  D  F  W  T  K  L  R  R  N  Y  Q  D  T  T  Q  R  L  K  R  K  R  R  R  K  K  T  K  *  N  E  M  F  F  *  F  Y  F  W  D  V  M  I  V  F  L  C  C  F  G  F  *  V  F  F  I  S  F  T  F  V  F  F  G  F  *  R  I  I  V  S  T  V  F  D  I  S  V  C  K  C  I  C  M  C  L  M  C  M  K  F  D  N  M  D  L  *  N  A  V  D  F  I  L  I  D  F  F  V  L  W  F  S  C  F  I  S  N  S  V  I  *  R  R  I  V  Q  N  I  S  S  Y  Y  I  *  M  Q  I  L  E  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62325" stop="61909"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVVRRLYMLIDLQSDEEEEIGEDGQKIKKKKKKGLKDKIKEKISGDHKEESKAEDTSVPVEKYEETEEKKGFLDKIKEKLPGGGHKKTEEVAAPPPPPPAAVEHEAEGKEKKGFLDKIKEKLPGYHSKAEEEKEKEKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62766" stop="62476"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRRRSMADQYEQNKASVEETVGTNVEATDRGLFDFIGKKEEEKPSHAHEEEAISSELSEKVNVSEEVEPKEEEKKLHRSNSSSSSSVSLSFVHH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="62816" e_stop="62503"/>
            <exon e_start="62286" e_stop="62199"/>
            <exon e_start="61926" e_stop="61897"/>
            <exon e_start="60284" e_stop="60251"/>
            <exon e_start="59885" e_stop="59836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.795"/>
          <exon-intron don_prob="0.086" acc_prob="0.000" e_score="0.600"/>
          <exon-intron don_prob="0.535" acc_prob="0.786" e_score="0.588"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62816" e_stop="62503" e_length="314"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="62502" i_stop="62287" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="0.795">
            <gDNA_exon_boundary e_start="62286" e_stop="62199" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62198" i_stop="61927" i_length="272"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="61926" e_stop="61897" e_length="30"/>
          </exon>
          <intron i_serial="3" don_prob="0.086" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61896" i_stop="60285" i_length="1612"/>
          </intron>
          <exon e_serial="4" e_score="0.588">
            <gDNA_exon_boundary e_start="60284" e_stop="60251" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.535" acc_prob="0.786">
            <gDNA_intron_boundary i_start="60250" i_stop="59886" i_length="365"/>
          </intron>
          <exon e_serial="5" e_score="0.500">
            <gDNA_exon_boundary e_start="59885" e_stop="59836" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62816" stop="62503"/>
              <exon start="62286" stop="62199"/>
              <exon start="61926" stop="61897"/>
              <exon start="60284" stop="60251"/>
              <exon start="59885" stop="59836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62797" stop="62532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62775" stop="62503"/>
              <exon start="62286" stop="62230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACATCCAATTCAATATTCAAACTTTCACTTGTTGATAATATCTTTTTGATTGAAAAAAAGAAGAAGAAGTATGGCTGATCAATACGAACAGAACAAGGCATCCGTTGAAGAGACTGTTGGTACCAACGTGGAAGCTACTGATCGTGGTTTGTTTGATTTCATTGGAAAAAAAGAAGAGGAAAAACCAAGTCATGCTCATGAAGAAGAGGCAATTTCATCTGAGTTGTCTGAAAAAGTTAACGTAAGTGAAGAAGTGGAACCCAAGGAGGAGGAAAAGAAACTTCATCGATCAAATAGCAGCTCTAGTAGCTCC : AGTGATGAGGAGGAAGAAATTGGAGAGGATGGACAGAAGATCAAGAAGAAGAAAAAGAAGGGATTGAAGGATAAGATTAAGGAAAAAA : GAGAAGGAAAAAGACTAAATGAAATGAAAT : AACAAAATGAGAAGAAAAACAGAAACCTTATTAA : GTATGGAAATATATATAGTGAAGATAATGTTGCAATAAGTGGGACACATA</gDNA_template>
            <first_frame> H  I  Q  F  N  I  Q  T  F  T  C  *  *  Y  L  F  D  *  K  K  E  E  E  V  W  L  I  N  T  N  R  T  R  H  P  L  K  R  L  L  V  P  T  W  K  L  L  I  V  V  C  L  I  S  L  E  K  K  K  R  K  N  Q  V  M  L  M  K  K  R  Q  F  H  L  S  C  L  K  K  L  T  *  V  K  K  W  N  P  R  R  R  K  R  N  F  I  D  Q  I  A  A  L  V  A  P :   V  M  R  R  K  K  L  E  R  M  D  R  R  S  R  R  R  K  R  R  D  *  R  I  R  L  R  K  K  :  E  K  E  K  D  *  M  K  *  N  :  N  K  M  R  R  K  T  E  T  L  L   : S  M  E  I  Y  I  V  K  I  M  L  Q  *  V  G  H  I </first_frame>
            <second_frame>  T  S  N  S  I  F  K  L  S  L  V  D  N  I  F  L  I  E  K  K  K  K  K  Y  G  *  S  I  R  T  E  Q  G  I  R  *  R  D  C  W  Y  Q  R  G  S  Y  *  S  W  F  V  *  F  H  W  K  K  R  R  G  K  T  K  S  C  S  *  R  R  G  N  F  I  *  V  V  *  K  S  *  R  K  *  R  S  G  T  Q  G  G  G  K  E  T  S  S  I  K  *  Q  L  *  *  L   : Q  *  *  G  G  R  N  W  R  G  W  T  E  D  Q  E  E  E  K  E  G  I  E  G  *  D  *  G  K  K :   R  R  K  K  T  K  *  N  E  I :   T  K  *  E  E  K  Q  K  P  Y  *  :  V  W  K  Y  I  *  *  R  *  C  C  N  K  W  D  T   </second_frame>
            <third_frame>   H  P  I  Q  Y  S  N  F  H  L  L  I  I  S  F  *  L  K  K  R  R  R  S  M  A  D  Q  Y  E  Q  N  K  A  S  V  E  E  T  V  G  T  N  V  E  A  T  D  R  G  L  F  D  F  I  G  K  K  E  E  E  K  P  S  H  A  H  E  E  E  A  I  S  S  E  L  S  E  K  V  N  V  S  E  E  V  E  P  K  E  E  E  K  K  L  H  R  S  N  S  S  S  S  S  S  :  S  D  E  E  E  E  I  G  E  D  G  Q  K  I  K  K  K  K  K  K  G  L  K  D  K  I  K  E  K   : R  E  G  K  R  L  N  E  M  K   : *  Q  N  E  K  K  N  R  N  L  I  K :   Y  G  N  I  Y  S  E  D  N  V  A  I  S  G  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62766" stop="62503"/>
                    <exon start="62286" stop="62199"/>
                    <exon start="61926" stop="61897"/>
                    <exon start="60284" stop="60283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKKRRRSMADQYEQNKASVEETVGTNVEATDRGLFDFIGKKEEEKPSHAHEEEAISSELSEKVNVSEEVEPKEEEKKLHRSNSSSSSSSDEEEEIGEDGQKIKKKKKKGLKDKIKEKREGKRLNEMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="61705" PGL_stop="62273"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61705" e_stop="62273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="61705" e_stop="62273" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61705" stop="62128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61707" stop="62273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61872" stop="62181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281598" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCCATATTATCAAACTTCATACACATAAGGCACATACATATGCACTTACATACAGAAATATCAAATACAGTACTAACAATTATCCTTCAGAATCCAAAAAAAACAAAAGTGAAGGAAATGAAAAACACTTAAAAACCAAAACAACACAGAAACACAATCATAACATCCCAAAAGTAAAATTAAAAAAACATTTCATTTCATTTAGTCTTTTTCCTTCTCCTTTTCCTCTTCAGCCTTTGAGTGGTATCCTGGTAATTTCTCCTTAATTTTGTCCAAAAATCCCTTCTTCTCCTTCCCCTCCGCCTCATGCTCCACCGCAGCCGGTGGTGGTGGTGGTGGCGCCGCCACTTCCTCCGTCTTCTTATGCCCGCCACCTGGCAATTTCTCCTTAATTTTGTCTAGAAATCCTTTTTTCTCCTCTGTTTCCTCGTATTTCTCAACTGGAACTGAGGTATCCTCTGCTTTCGATTCTTCCTTGTGATCACCAGATATTTTTTCCTTAATCTTATCCTTCAATCCCTTCTTTTTCTTCTTCTTGATCTTCTGTCCATCCTCTCCAATTTCTT</gDNA_template>
            <first_frame> K  S  I  L  S  N  F  I  H  I  R  H  I  H  M  H  L  H  T  E  I  S  N  T  V  L  T  I  I  L  Q  N  P  K  K  T  K  V  K  E  M  K  N  T  *  K  P  K  Q  H  R  N  T  I  I  T  S  Q  K  *  N  *  K  N  I  S  F  H  L  V  F  F  L  L  L  F  L  F  S  L  *  V  V  S  W  *  F  L  L  N  F  V  Q  K  S  L  L  L  L  P  L  R  L  M  L  H  R  S  R  W  W  W  W  W  R  R  H  F  L  R  L  L  M  P  A  T  W  Q  F  L  L  N  F  V  *  K  S  F  F  L  L  C  F  L  V  F  L  N  W  N  *  G  I  L  C  F  R  F  F  L  V  I  T  R  Y  F  F  L  N  L  I  L  Q  S  L  L  F  L  L  L  D  L  L  S  I  L  S  N  F   </first_frame>
            <second_frame>  N  P  Y  Y  Q  T  S  Y  T  *  G  T  Y  I  C  T  Y  I  Q  K  Y  Q  I  Q  Y  *  Q  L  S  F  R  I  Q  K  K  Q  K  *  R  K  *  K  T  L  K  N  Q  N  N  T  E  T  Q  S  *  H  P  K  S  K  I  K  K  T  F  H  F  I  *  S  F  S  F  S  F  S  S  S  A  F  E  W  Y  P  G  N  F  S  L  I  L  S  K  N  P  F  F  S  F  P  S  A  S  C  S  T  A  A  G  G  G  G  G  G  A  A  T  S  S  V  F  L  C  P  P  P  G  N  F  S  L  I  L  S  R  N  P  F  F  S  S  V  S  S  Y  F  S  T  G  T  E  V  S  S  A  F  D  S  S  L  *  S  P  D  I  F  S  L  I  L  S  F  N  P  F  F  F  F  F  L  I  F  C  P  S  S  P  I  S  </second_frame>
            <third_frame>   I  H  I  I  K  L  H  T  H  K  A  H  T  Y  A  L  T  Y  R  N  I  K  Y  S  T  N  N  Y  P  S  E  S  K  K  N  K  S  E  G  N  E  K  H  L  K  T  K  T  T  Q  K  H  N  H  N  I  P  K  V  K  L  K  K  H  F  I  S  F  S  L  F  P  S  P  F  P  L  Q  P  L  S  G  I  L  V  I  S  P  *  F  C  P  K  I  P  S  S  P  S  P  P  P  H  A  P  P  Q  P  V  V  V  V  V  A  P  P  L  P  P  S  S  Y  A  R  H  L  A  I  S  P  *  F  C  L  E  I  L  F  S  P  L  F  P  R  I  S  Q  L  E  L  R  Y  P  L  L  S  I  L  P  C  D  H  Q  I  F  F  P  *  S  Y  P  S  I  P  S  F  S  S  S  *  S  S  V  H  P  L  Q  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61913" stop="62188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSFSFSSSAFEWYPGNFSLILSKNPFFSFPSASCSTAAGGGGGGAATSSVFLCPPPGNFSLILSRNPFFSSVSSYFSTGTEVSSAFDSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61707" stop="61973"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIIKLHTHKAHTYALTYRNIKYSTNNYPSESKKNKSEGNEKHLKTKTTQKHNHNIPKVKLKKHFISFSLFPSPFPLQPLSGILVISP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="67503" PGL_stop="69347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67503" e_stop="67858"/>
            <exon e_start="68752" e_stop="69347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67503" e_stop="67858" e_length="356"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67859" i_stop="68751" i_length="893"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="68752" e_stop="69347" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67503" stop="67858"/>
              <exon start="68752" stop="69054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67503" stop="67858"/>
              <exon start="68752" stop="68929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67528" stop="67858"/>
              <exon start="68752" stop="69054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67581" stop="67858"/>
              <exon start="68752" stop="68930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361379" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67596" stop="67858"/>
              <exon start="68752" stop="68938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67659" stop="67858"/>
              <exon start="68752" stop="68996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67675" stop="67858"/>
              <exon start="68752" stop="69026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67703" stop="67858"/>
              <exon start="68752" stop="69126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68898" stop="69347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68898" stop="69347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACAAATATCTCAAAAATAGTTCAGGTAAGAAAATACAAAATTTATAATATTCCAAAGAAAATTAACTGGTATCGAATTTCTTCTTTACAGCAAGTCAAAATTCCTTCCGCCGGCGGCCGTGATCCCGTCGCCGGAAGGAACGCTGTTCTGTAGATACACAAATTTCAGACGGAATTGCATTTGATAGATTGCAAAAAAGTTTAAAGAAGAGGAGAGAAAGCAGTAAATTGGAATCATGATAACGCGATCGAATTTGGCGGAGCAGCTGAGAGAGTATCAGATTCGATCAAAGCACGATTGGGCTTCGGTCTCCTTCTTTTCCTCCACCTCTAATCTCACATCTACAGCTTCAAG : GGCGGATGTCGTCATGTTTGTAATATGTGAGCTGGTTATCTTGGCACTCCTGGTTTTCTCTGTAGTTTCATTGTACTTCACGCATCTAAAGCTTGCATTTATCTTAGTAAGTACTAGCTTGCTATTGCTTGTATGTGTGACAATTGCAAAGCAAGTTACAGAAGCCAGGAAGAAGAAGCGAAGAATGCTTCTTCCATTATCAATGTAGAAGTGCGTGATGGAAAATCTTTTTTGCTATGCCCAACTTATATTTTAATGTGAAATCTCAACCAACAATTCTGTCTTTTCTTTTTTTCTTTTCTGAATTCCTTTTGACACAAGTAATTGTAGTAGAGGCAAGCTGATTAAATGGTGCTGATTTTGAGATCATTTGACATCAGAGCTGTCATTTTTGTTATATACTTCATAGGTGTTTGGGCTTGTTGATAAAGCTTCATGTAAGTTTAACCTCAGTCCTAAAATGTAATTCTCGTGTACCTTCATACTTAAATCTCTATTCAGTCTTACATTTTATTGTCACAATGGAAGGCATTTGTTCTGTCAACATTGTTCCTAAATCATGAAGAATATTGATCTTTGATGTCTGCACTTTATTT</gDNA_template>
            <first_frame> K  Q  I  S  Q  K  *  F  R  *  E  N  T  K  F  I  I  F  Q  R  K  L  T  G  I  E  F  L  L  Y  S  K  S  K  F  L  P  P  A  A  V  I  P  S  P  E  G  T  L  F  C  R  Y  T  N  F  R  R  N  C  I  *  *  I  A  K  K  F  K  E  E  E  R  K  Q  *  I  G  I  M  I  T  R  S  N  L  A  E  Q  L  R  E  Y  Q  I  R  S  K  H  D  W  A  S  V  S  F  F  S  S  T  S  N  L  T  S  T  A  S  R :   A  D  V  V  M  F  V  I  C  E  L  V  I  L  A  L  L  V  F  S  V  V  S  L  Y  F  T  H  L  K  L  A  F  I  L  V  S  T  S  L  L  L  L  V  C  V  T  I  A  K  Q  V  T  E  A  R  K  K  K  R  R  M  L  L  P  L  S  M  *  K  C  V  M  E  N  L  F  C  Y  A  Q  L  I  F  *  C  E  I  S  T  N  N  S  V  F  S  F  F  L  F  *  I  P  F  D  T  S  N  C  S  R  G  K  L  I  K  W  C  *  F  *  D  H  L  T  S  E  L  S  F  L  L  Y  T  S  *  V  F  G  L  V  D  K  A  S  C  K  F  N  L  S  P  K  M  *  F  S  C  T  F  I  L  K  S  L  F  S  L  T  F  Y  C  H  N  G  R  H  L  F  C  Q  H  C  S  *  I  M  K  N  I  D  L  *  C  L  H  F  I  </first_frame>
            <second_frame>  N  K  Y  L  K  N  S  S  G  K  K  I  Q  N  L  *  Y  S  K  E  N  *  L  V  S  N  F  F  F  T  A  S  Q  N  S  F  R  R  R  P  *  S  R  R  R  K  E  R  C  S  V  D  T  Q  I  S  D  G  I  A  F  D  R  L  Q  K  S  L  K  K  R  R  E  S  S  K  L  E  S  *  *  R  D  R  I  W  R  S  S  *  E  S  I  R  F  D  Q  S  T  I  G  L  R  S  P  S  F  P  P  P  L  I  S  H  L  Q  L  Q   : G  R  M  S  S  C  L  *  Y  V  S  W  L  S  W  H  S  W  F  S  L  *  F  H  C  T  S  R  I  *  S  L  H  L  S  *  *  V  L  A  C  Y  C  L  Y  V  *  Q  L  Q  S  K  L  Q  K  P  G  R  R  S  E  E  C  F  F  H  Y  Q  C  R  S  A  *  W  K  I  F  F  A  M  P  N  L  Y  F  N  V  K  S  Q  P  T  I  L  S  F  L  F  F  F  S  E  F  L  L  T  Q  V  I  V  V  E  A  S  *  L  N  G  A  D  F  E  I  I  *  H  Q  S  C  H  F  C  Y  I  L  H  R  C  L  G  L  L  I  K  L  H  V  S  L  T  S  V  L  K  C  N  S  R  V  P  S  Y  L  N  L  Y  S  V  L  H  F  I  V  T  M  E  G  I  C  S  V  N  I  V  P  K  S  *  R  I  L  I  F  D  V  C  T  L  F </second_frame>
            <third_frame>   T  N  I  S  K  I  V  Q  V  R  K  Y  K  I  Y  N  I  P  K  K  I  N  W  Y  R  I  S  S  L  Q  Q  V  K  I  P  S  A  G  G  R  D  P  V  A  G  R  N  A  V  L  *  I  H  K  F  Q  T  E  L  H  L  I  D  C  K  K  V  *  R  R  G  E  K  A  V  N  W  N  H  D  N  A  I  E  F  G  G  A  A  E  R  V  S  D  S  I  K  A  R  L  G  F  G  L  L  L  F  L  H  L  *  S  H  I  Y  S  F  K  :  G  G  C  R  H  V  C  N  M  *  A  G  Y  L  G  T  P  G  F  L  C  S  F  I  V  L  H  A  S  K  A  C  I  Y  L  S  K  Y  *  L  A  I  A  C  M  C  D  N  C  K  A  S  Y  R  S  Q  E  E  E  A  K  N  A  S  S  I  I  N  V  E  V  R  D  G  K  S  F  L  L  C  P  T  Y  I  L  M  *  N  L  N  Q  Q  F  C  L  F  F  F  S  F  L  N  S  F  *  H  K  *  L  *  *  R  Q  A  D  *  M  V  L  I  L  R  S  F  D  I  R  A  V  I  F  V  I  Y  F  I  G  V  W  A  C  *  *  S  F  M  *  V  *  P  Q  S  *  N  V  I  L  V  Y  L  H  T  *  I  S  I  Q  S  Y  I  L  L  S  Q  W  K  A  F  V  L  S  T  L  F  L  N  H  E  E  Y  *  S  L  M  S  A  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67731" stop="67858"/>
                    <exon start="68752" stop="68959"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGIMITRSNLAEQLREYQIRSKHDWASVSFFSSTSNLTSTASRADVVMFVICELVILALLVFSVVSLYFTHLKLAFILVSTSLLLLVCVTIAKQVTEARKKKRRMLLPLSM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="77769" PGL_stop="77322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77769" e_stop="77322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="77769" e_stop="77322" e_length="448"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77769" stop="77448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77769" stop="77479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77768" stop="77322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAGTTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATTGTATTTCACTACAATTGTATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATTTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAAAAACAGAATTATACACTTCTGTATATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTTTTGGGAGAGAGACACTGGCAAATTTTAGCGAATGTTTGCTATGGAGCACAATTAAATCAAACCCTAGCTATTCCATTTAATTTAGGTTATTAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  S  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  Y  N  C  I  I  H  N  C  I  I  R  W  P  F  S  L  Q  Y  L  K  *  N  F  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  K  N  R  I  I  H  F  C  I  *  S  E  R  G  E  R  E  W  R  V  A  S  E  I  F  G  R  E  T  L  A  N  F  S  E  C  L  L  W  S  T  I  K  S  N  P  S  Y  S  I  *  F  R  L  L  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  V  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  *  R  K  L  Y  F  T  T  I  V  *  F  T  I  V  *  F  V  G  L  F  L  C  N  I  *  S  K  I  F  V  N  C  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  K  T  E  L  Y  T  S  V  Y  K  A  R  E  A  S  E  N  G  E  W  R  A  R  F  L  G  E  R  H  W  Q  I  L  A  N  V  C  Y  G  A  Q  L  N  Q  T  L  A  I  P  F  N  L  G  Y  * </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  F  L  *  I  V  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  Y  T  L  L  Y  I  K  R  E  R  R  A  R  M  E  S  G  E  R  D  F  W  E  R  D  T  G  K  F  *  R  M  F  A  M  E  H  N  *  I  K  P  *  L  F  H  L  I  *  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77582" stop="77322"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIFVNCIIKCITRRYTFLHVYIQFSLALYKTKTELYTSVYKAREASENGEWRARFLGERHWQILANVCYGAQLNQTLAIPFNLGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="78192" PGL_stop="80761"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78192" e_stop="78364"/>
            <exon e_start="79707" e_stop="79752"/>
            <exon e_start="79842" e_stop="79889"/>
            <exon e_start="80486" e_stop="80761"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78192" e_stop="78364" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="0.999">
            <gDNA_intron_boundary i_start="78365" i_stop="79706" i_length="1342"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79707" e_stop="79752" e_length="46"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79889" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80486" e_stop="80761" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78192" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78192" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78192" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78206" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78228" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78231" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78232" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78234" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78235" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78252" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78252" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78259" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78270" stop="78364"/>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTTCCAGTTTATTCAACCACTGAAGCTTTTCGGGAGCAGCGATTAACGAAGAGAAGAGAAAGAGAGATGGGAGGTGGAGATGGACATGGCGTGACCTTCAAAGGCATCACTGTACATCAACCTAAGCGTTGGCACTCCGTTACCGGAAAAGGATTGTGTGCCGTCATGTG : GTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG : GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG : ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATACATAAGACTTCTTAGTCTTTCTCCTCCA</gDNA_template>
            <first_frame> *  F  P  V  Y  S  T  T  E  A  F  R  E  Q  R  L  T  K  R  R  E  R  E  M  G  G  G  D  G  H  G  V  T  F  K  G  I  T  V  H  Q  P  K  R  W  H  S  V  T  G  K  G  L  C  A  V  M  W :   F  W  I  L  Y  R  A  K  K  D  G  P  V  V  L  :  G  W  R  H  P  W  E  G  H  G  H  G  H  D  H  *  :  I  C  C  R  S  C  G  W  I  V  N  Q  Y  D  Q  C  *  C  L  S  W  K  I  Q  L  N  I  F  R  N  S  C  V  F  C  S  I  K  N  P  M  K  W  I  I  V  F  A  C  H  F  C  F  N  *  A  V  C  P  I  V  S  A  V  L  *  T  T  S  L  F  V  F  P  T  *  Q  Y  S  N  F  L  Y  I  R  L  L  S  L  S  P  P </first_frame>
            <second_frame>  N  F  Q  F  I  Q  P  L  K  L  F  G  S  S  D  *  R  R  E  E  K  E  R  W  E  V  E  M  D  M  A  *  P  S  K  A  S  L  Y  I  N  L  S  V  G  T  P  L  P  E  K  D  C  V  P  S  C   : G  F  G  F  Y  T  G  P  R  K  M  V  L  *  C  W :   A  G  G  I  P  G  K  A  M  A  M  V  M  T  I  R :   Y  A  V  E  A  V  A  G  L  *  T  N  M  I  N  A  N  V  F  L  G  K  F  S  *  I  S  F  E  T  V  V  F  F  V  Q  *  R  I  L  *  S  G  *  L  F  L  H  V  I  F  V  L  I  E  L  F  V  P  L  F  L  Q  C  C  E  Q  L  L  C  L  Y  F  Q  L  D  N  I  V  I  F  Y  T  *  D  F  L  V  F  L  L   </second_frame>
            <third_frame>   I  S  S  L  F  N  H  *  S  F  S  G  A  A  I  N  E  E  K  R  K  R  D  G  R  W  R  W  T  W  R  D  L  Q  R  H  H  C  T  S  T  *  A  L  A  L  R  Y  R  K  R  I  V  C  R  H  V  :  V  L  D  F  I  P  G  Q  E  R  W  S  C  S  V   : G  L  E  A  S  L  G  R  P  W  P  W  S  *  P  L   : D  M  L  *  K  L  W  L  D  C  K  P  I  *  S  M  L  M  S  F  L  E  N  S  V  E  Y  L  S  K  Q  L  C  F  L  F  N  K  E  S  Y  E  V  D  N  C  F  C  M  S  F  L  F  *  L  S  C  L  S  H  C  F  C  S  V  V  N  N  F  S  V  C  I  S  N  L  T  I  *  *  F  F  I  H  K  T  S  *  S  F  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78195" stop="78364"/>
                    <exon start="79707" stop="79752"/>
                    <exon start="79842" stop="79889"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPVYSTTEAFREQRLTKRREREMGGGDGHGVTFKGITVHQPKRWHSVTGKGLCAVMWFWILYRAKKDGPVVLGWRHPWEGHGHGHDH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79661" e_stop="79752"/>
            <exon e_start="79842" e_stop="79889"/>
            <exon e_start="80486" e_stop="80734"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="1.000" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="79661" e_stop="79752" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79753" i_stop="79841" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79842" e_stop="79889" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="79890" i_stop="80485" i_length="596"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80486" e_stop="80734" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79661" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79665" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79707" stop="79752"/>
              <exon start="79842" stop="79889"/>
              <exon start="80486" stop="80729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCACTTATTATATATAATAACATCAGATTGTGTTTGATTTTTCAGGTTTTGGATTTTATACCGGGCCAAGAAAGATGGTCCTGTAGTGTTG : GGCTGGAGGCATCCCTGGGAAGGCCATGGCCATGGTCATGACCATTAG : ATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTCAGTTGAATATCTTTCGAAACAGTTGTGTTTTTTGTTCAATAAAGAATCCTATGAAGTGGATAATTGTTTTTGCATGTCATTTTTGTTTTAATTGAGCTGTTTGTCCCATTGTTTCTGCAGTGTTGTGAACAACTTCTCTGTTTGTATTTCCAACTTGACAATATAGTAATTTTTTATAC</gDNA_template>
            <first_frame> I  T  Y  Y  I  *  *  H  Q  I  V  F  D  F  S  G  F  G  F  Y  T  G  P  R  K  M  V  L  *  C  W :   A  G  G  I  P  G  K  A  M  A  M  V  M  T  I  R :   Y  A  V  E  A  V  A  G  L  *  T  N  M  I  N  A  N  V  F  L  G  K  F  S  *  I  S  F  E  T  V  V  F  F  V  Q  *  R  I  L  *  S  G  *  L  F  L  H  V  I  F  V  L  I  E  L  F  V  P  L  F  L  Q  C  C  E  Q  L  L  C  L  Y  F  Q  L  D  N  I  V  I  F  Y   </first_frame>
            <second_frame>  S  L  I  I  Y  N  N  I  R  L  C  L  I  F  Q  V  L  D  F  I  P  G  Q  E  R  W  S  C  S  V   : G  L  E  A  S  L  G  R  P  W  P  W  S  *  P  L   : D  M  L  *  K  L  W  L  D  C  K  P  I  *  S  M  L  M  S  F  L  E  N  S  V  E  Y  L  S  K  Q  L  C  F  L  F  N  K  E  S  Y  E  V  D  N  C  F  C  M  S  F  L  F  *  L  S  C  L  S  H  C  F  C  S  V  V  N  N  F  S  V  C  I  S  N  L  T  I  *  *  F  F  I  </second_frame>
            <third_frame>   H  L  L  Y  I  I  T  S  D  C  V  *  F  F  R  F  W  I  L  Y  R  A  K  K  D  G  P  V  V  L  :  G  W  R  H  P  W  E  G  H  G  H  G  H  D  H  *  :  I  C  C  R  S  C  G  W  I  V  N  Q  Y  D  Q  C  *  C  L  S  W  K  I  Q  L  N  I  F  R  N  S  C  V  F  C  S  I  K  N  P  M  K  W  I  I  V  F  A  C  H  F  C  F  N  *  A  V  C  P  I  V  S  A  V  L  *  T  T  S  L  F  V  F  P  T  *  Q  Y  S  N  F  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="80101" e_stop="80555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="80101" e_stop="80555" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80101" stop="80555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGGCAACTATTTAAGCAGAGAGATGTCTTCTTTTAGCCAAAATAACTAAGCGTAGGAGATTCATGTCAAAACATTTTTCTTGAGCTGAATATGTGGTTCATAGGACGAGTTTGATTGTTGGTAGATCATCACTTGCACCAGCATATTCCCACCTTTTGCAATCTCTTCACTACTCGGATATTTGCTGCTAGTACTATGTTGAGATTTTGAGATACTCAAAAACCTATGAAAATCTTAATGTGCTGTCAGTTATAAATTTATTGGTTGAATTATTGTGACATTGATATCTTCAAGTGTGCTGTTCCTGACTTCCAAAGTCTTGAATCCTCTATTTTTGTTTGACTAACCCATTCTGGTGAATTGTGCTAATTGATTTTGCAGATATGCTGTAGAAGCTGTGGCTGGATTGTAAACCAATATGATCAATGCTAATGTCTTTCTTGGAAAATTC</gDNA_template>
            <first_frame> K  M  A  T  I  *  A  E  R  C  L  L  L  A  K  I  T  K  R  R  R  F  M  S  K  H  F  S  *  A  E  Y  V  V  H  R  T  S  L  I  V  G  R  S  S  L  A  P  A  Y  S  H  L  L  Q  S  L  H  Y  S  D  I  C  C  *  Y  Y  V  E  I  L  R  Y  S  K  T  Y  E  N  L  N  V  L  S  V  I  N  L  L  V  E  L  L  *  H  *  Y  L  Q  V  C  C  S  *  L  P  K  S  *  I  L  Y  F  C  L  T  N  P  F  W  *  I  V  L  I  D  F  A  D  M  L  *  K  L  W  L  D  C  K  P  I  *  S  M  L  M  S  F  L  E  N   </first_frame>
            <second_frame>  K  W  Q  L  F  K  Q  R  D  V  F  F  *  P  K  *  L  S  V  G  D  S  C  Q  N  I  F  L  E  L  N  M  W  F  I  G  R  V  *  L  L  V  D  H  H  L  H  Q  H  I  P  T  F  C  N  L  F  T  T  R  I  F  A  A  S  T  M  L  R  F  *  D  T  Q  K  P  M  K  I  L  M  C  C  Q  L  *  I  Y  W  L  N  Y  C  D  I  D  I  F  K  C  A  V  P  D  F  Q  S  L  E  S  S  I  F  V  *  L  T  H  S  G  E  L  C  *  L  I  L  Q  I  C  C  R  S  C  G  W  I  V  N  Q  Y  D  Q  C  *  C  L  S  W  K  I  </second_frame>
            <third_frame>   N  G  N  Y  L  S  R  E  M  S  S  F  S  Q  N  N  *  A  *  E  I  H  V  K  T  F  F  L  S  *  I  C  G  S  *  D  E  F  D  C  W  *  I  I  T  C  T  S  I  F  P  P  F  A  I  S  S  L  L  G  Y  L  L  L  V  L  C  *  D  F  E  I  L  K  N  L  *  K  S  *  C  A  V  S  Y  K  F  I  G  *  I  I  V  T  L  I  S  S  S  V  L  F  L  T  S  K  V  L  N  P  L  F  L  F  D  *  P  I  L  V  N  C  A  N  *  F  C  R  Y  A  V  E  A  V  A  G  L  *  T  N  M  I  N  A  N  V  F  L  G  K  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="84762" PGL_stop="88062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84762" e_stop="86196"/>
            <exon e_start="86592" e_stop="86838"/>
            <exon e_start="86929" e_stop="87112"/>
            <exon e_start="87483" e_stop="87654"/>
            <exon e_start="87731" e_stop="88062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.999"/>
          <exon-intron don_prob="0.931" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.633" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="84762" e_stop="86196" e_length="1435"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86197" i_stop="86591" i_length="395"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86592" e_stop="86838" e_length="247"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86839" i_stop="86928" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86929" e_stop="87112" e_length="184"/>
          </exon>
          <intron i_serial="3" don_prob="0.970" acc_prob="0.633">
            <gDNA_intron_boundary i_start="87113" i_stop="87482" i_length="370"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87483" e_stop="87654" e_length="172"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="87655" i_stop="87730" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="87731" e_stop="88062" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84762" stop="85263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84765" stop="85357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84767" stop="85435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84775" stop="85457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84799" stop="85307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84886" stop="85424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84899" stop="85576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84911" stop="85302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84929" stop="85437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84935" stop="85480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85038" stop="85971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85038" stop="85912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85381" stop="86196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85663" stop="86196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85824" stop="86196"/>
              <exon start="86592" stop="86759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85885" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85912" stop="86196"/>
              <exon start="86592" stop="86779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85970" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85993" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86011" stop="86196"/>
              <exon start="86592" stop="86804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86017" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86031" stop="86196"/>
              <exon start="86592" stop="86782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86053" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86053" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86071" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86132" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86150" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86153" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86164" stop="86196"/>
              <exon start="86592" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86617" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86635" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="88053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86677" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86738" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86789" stop="86838"/>
              <exon start="86929" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="88050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87002" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="88062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87049" stop="87112"/>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="88061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87483" stop="87654"/>
              <exon start="87731" stop="87952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87513" stop="87654"/>
              <exon start="87731" stop="88058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87554" stop="87654"/>
              <exon start="87731" stop="88056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87595" stop="87654"/>
              <exon start="87731" stop="88058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87751" stop="88061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87753" stop="88061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCAACCCAAACCAACATCCAAATCTATGGCTTCTATTCAATTTCTCAAGAACTAGCAAAGACTAATTCTTTATTTTTTGCATATATAGTTACAATAAATTCCCCAAATTTAACAACAATCTTGTTCCACCAATGGCCAATGCTGTACTCTCTTCCAATTTCTTGGGTTCCCAAATCTTTGTTTCTCCTCCCACACCTAAAACCTCAAGGTATTTCCATCTTCACTCCAGAAGAAAGTATATAGTTCCTCAATCAATTCTCAGCAAAAAATCCAATTCAGATAATTTCAAGAATGTTCCATCTAAAGCTGCTATAGCTGCTTTACTCTTCTCTTCAATCACCCCACAAGCTTTTGCTCTTGATAATACAACCCCAGCAGCACCACCACAAGTGATTGAAGCTGAAGCACCAAAACCTAGTGCCTCAAACTCATTACCCTTTGCTCAAAATATCATTTTGAATGCTCCAAAGACTCAAGCGCAGCCTGCTTCTGACCTTCCTGAAGGTACTCAATGGAGGTACAGTGAGTTCTTGAATGCTGTGAAGAAGGGGAAAGTTGAAAGGGTTAGATTTAGTAAAGACGGAAGTACCCTTCAGCTTACAGCTGTAGATGGGCGTAGAGCTAATGTAATTGTGCCTAATGACCCGGATTTAATCGATATTTTGGCGATGAATGGTGTTGATATATCAGTTTCTGAAGGTGAAGGGGGTAATGGGTTGTTTAGTGTTATTGGGAACTTGTTGTTCCCTATTATTGCTTTTGCTGGGTTGTTTTTCCTTTTCAGGCGGTCTCAGGGCGGCCCAGGTGGGCCTGGAGGACTTGGCGGGCCGATGGATTTCGGCCGGTCTAAGTCCAAGTTTCAGGAGGTGCCTGAAACTGGAGTGACTTTTGCTGATGTTGCTGGTGCTGATCAAGCTAAATTGGAGTTACAGGAAGTGGTTGATTTCTTGAAAAATCCTGATAAGTATACTGCTTTAGGTGCTAAGATACCAAAAGGGTGTCTTTTAGTTGGTCCACCAGGTACTGGAAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTTTTCTCTTGTGCAGCGTCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTTAGGGATTTGTTTGAGAAGGCGAAGTCTAAAGCACCTTGTATTGTGTTTATTGATGAGATTGATGCTGTGGGAAGGCAAAGAGGTGCAGGTCTTGGAGGTGGAAATGATGAGAGGGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTTCTCTGGAAATTCGGGTGTCATTGTTTTGGCTGCAACTAACAGGCCTGATGTTCTTGATTCTGCCTTGTTGAGACCTGGAAGGTTTGATCGACAAGTGACTGTGGATAGGCCTGATGTTGCTGGTAGAGTCAGGATTCTTCAG : GTGCATTCTAGAGGAAAGGCCCTTGCCAAGGATGTGGACTTTGATAAGATTGCCAGGAGAACACCAGGTTTCACCGGTGCAGATTTGCAAAACTTGATGAATGAAGCAGCCATCCTTGCAGCTAGGCGTGACCTAAAGGAAATAAGTAAAGATGAGATATCCGATGCTCTAGAGAGGATAATTGCTGGCCCGGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAGCTGGTAGCTTATCATG : AGGCTGGCCATGCCTTGGTTGGTGCACTTATGCCCGAGTATGATCCTGTTGCCAAGATATCTATAATTCCTCGAGGCCAAGCCGGTGGTCTCACCTTCTTTGCCCCCAGCGAAGAAAGACTTGAGTCGGGCCTGTACAGCAGGAGCTATCTAGAGAATCAAATGGCAGTTGCACTTGGTGGAAG : AGTTGCTGAGGAGGTTATTTTTGGACAAGACAACGTAACAACTGGAGCATCTAACGATTTCATGCAAGTCTCACGAGTGGCAAGGCAGATGGTTGAGAGATTAGGATTCAGCAAAAAGATAGGCCAAGTTGCCATTGGAGGAGGTGGTGGAAACCCGTTCCTAGGCCAACAG : ATGTCAACCCAGAAAGACTACTCCATGGCAACAGCCGATGTGGTCGATGCTGAAGTAAGGGAATTGGTTGAAAAGGCGTACGAAAGAGCTACACAAATCATCACAACTCACATCGACATCCTACACAAGCTTGCTCAGCTGTTGATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGCCTTTTCATTGATGGCAAGGCTGAGCTATACATTTCTTGATTTCACCAATGTATCTTCACCACTCTATTGTATTAACAAATATACATACAAATGTACACATTGAGAAATTTATTTTTCATATTTTGACAAATCAGAGTGCAAAACTGACA</gDNA_template>
            <first_frame> K  Q  P  K  P  T  S  K  S  M  A  S  I  Q  F  L  K  N  *  Q  R  L  I  L  Y  F  L  H  I  *  L  Q  *  I  P  Q  I  *  Q  Q  S  C  S  T  N  G  Q  C  C  T  L  F  Q  F  L  G  F  P  N  L  C  F  S  S  H  T  *  N  L  K  V  F  P  S  S  L  Q  K  K  V  Y  S  S  S  I  N  S  Q  Q  K  I  Q  F  R  *  F  Q  E  C  S  I  *  S  C  Y  S  C  F  T  L  L  F  N  H  P  T  S  F  C  S  *  *  Y  N  P  S  S  T  T  T  S  D  *  S  *  S  T  K  T  *  C  L  K  L  I  T  L  C  S  K  Y  H  F  E  C  S  K  D  S  S  A  A  C  F  *  P  S  *  R  Y  S  M  E  V  Q  *  V  L  E  C  C  E  E  G  E  S  *  K  G  *  I  *  *  R  R  K  Y  P  S  A  Y  S  C  R  W  A  *  S  *  C  N  C  A  *  *  P  G  F  N  R  Y  F  G  D  E  W  C  *  Y  I  S  F  *  R  *  R  G  *  W  V  V  *  C  Y  W  E  L  V  V  P  Y  Y  C  F  C  W  V  V  F  P  F  Q  A  V  S  G  R  P  R  W  A  W  R  T  W  R  A  D  G  F  R  P  V  *  V  Q  V  S  G  G  A  *  N  W  S  D  F  C  *  C  C  W  C  *  S  S  *  I  G  V  T  G  S  G  *  F  L  E  K  S  *  *  V  Y  C  F  R  C  *  D  T  K  R  V  S  F  S  W  S  T  R  Y  W  K  D  P  F  S  *  S  S  S  W  *  G  W  C  A  I  F  L  L  C  S  V  R  V  C  *  V  V  C  G  C  G  S  F  *  S  *  G  F  V  *  E  G  E  V  *  S  T  L  Y  C  V  Y  *  *  D  *  C  C  G  K  A  K  R  C  R  S  W  R  W  K  *  *  E  G  A  D  Y  *  S  A  F  D  *  N  G  W  V  L  W  K  F  G  C  H  C  F  G  C  N  *  Q  A  *  C  S  *  F  C  L  V  E  T  W  K  V  *  S  T  S  D  C  G  *  A  *  C  C  W  *  S  Q  D  S  S   : G  A  F  *  R  K  G  P  C  Q  G  C  G  L  *  *  D  C  Q  E  N  T  R  F  H  R  C  R  F  A  K  L  D  E  *  S  S  H  P  C  S  *  A  *  P  K  G  N  K  *  R  *  D  I  R  C  S  R  E  D  N  C  W  P  G  E  E  K  C  C  C  L  R  *  E  E  E  A  G  S  L  S  * :   G  W  P  C  L  G  W  C  T  Y  A  R  V  *  S  C  C  Q  D  I  Y  N  S  S  R  P  S  R  W  S  H  L  L  C  P  Q  R  R  K  T  *  V  G  P  V  Q  Q  E  L  S  R  E  S  N  G  S  C  T  W  W  K  :  S  C  *  G  G  Y  F  W  T  R  Q  R  N  N  W  S  I  *  R  F  H  A  S  L  T  S  G  K  A  D  G  *  E  I  R  I  Q  Q  K  D  R  P  S  C  H  W  R  R  W  W  K  P  V  P  R  P  T   : D  V  N  P  E  R  L  L  H  G  N  S  R  C  G  R  C  *  S  K  G  I  G  *  K  G  V  R  K  S  Y  T  N  H  H  N  S  H  R  H  P  T  Q  A  C  S  A  V  D  R  E  R  N  C  *  W  *  R  V  H  E  P  F  H  *  W  Q  G  *  A  I  H  F  L  I  S  P  M  Y  L  H  H  S  I  V  L  T  N  I  H  T  N  V  H  I  E  K  F  I  F  H  I  L  T  N  Q  S  A  K  L  T </first_frame>
            <second_frame>  S  N  P  N  Q  H  P  N  L  W  L  L  F  N  F  S  R  T  S  K  D  *  F  F  I  F  C  I  Y  S  Y  N  K  F  P  K  F  N  N  N  L  V  P  P  M  A  N  A  V  L  S  S  N  F  L  G  S  Q  I  F  V  S  P  P  T  P  K  T  S  R  Y  F  H  L  H  S  R  R  K  Y  I  V  P  Q  S  I  L  S  K  K  S  N  S  D  N  F  K  N  V  P  S  K  A  A  I  A  A  L  L  F  S  S  I  T  P  Q  A  F  A  L  D  N  T  T  P  A  A  P  P  Q  V  I  E  A  E  A  P  K  P  S  A  S  N  S  L  P  F  A  Q  N  I  I  L  N  A  P  K  T  Q  A  Q  P  A  S  D  L  P  E  G  T  Q  W  R  Y  S  E  F  L  N  A  V  K  K  G  K  V  E  R  V  R  F  S  K  D  G  S  T  L  Q  L  T  A  V  D  G  R  R  A  N  V  I  V  P  N  D  P  D  L  I  D  I  L  A  M  N  G  V  D  I  S  V  S  E  G  E  G  G  N  G  L  F  S  V  I  G  N  L  L  F  P  I  I  A  F  A  G  L  F  F  L  F  R  R  S  Q  G  G  P  G  G  P  G  G  L  G  G  P  M  D  F  G  R  S  K  S  K  F  Q  E  V  P  E  T  G  V  T  F  A  D  V  A  G  A  D  Q  A  K  L  E  L  Q  E  V  V  D  F  L  K  N  P  D  K  Y  T  A  L  G  A  K  I  P  K  G  C  L  L  V  G  P  P  G  T  G  K  T  L  L  A  R  A  V  A  G  E  A  G  V  P  F  F  S  C  A  A  S  E  F  V  E  L  F  V  G  V  G  A  S  R  V  R  D  L  F  E  K  A  K  S  K  A  P  C  I  V  F  I  D  E  I  D  A  V  G  R  Q  R  G  A  G  L  G  G  G  N  D  E  R  E  Q  T  I  N  Q  L  L  T  E  M  D  G  F  S  G  N  S  G  V  I  V  L  A  A  T  N  R  P  D  V  L  D  S  A  L  L  R  P  G  R  F  D  R  Q  V  T  V  D  R  P  D  V  A  G  R  V  R  I  L  Q  :  V  H  S  R  G  K  A  L  A  K  D  V  D  F  D  K  I  A  R  R  T  P  G  F  T  G  A  D  L  Q  N  L  M  N  E  A  A  I  L  A  A  R  R  D  L  K  E  I  S  K  D  E  I  S  D  A  L  E  R  I  I  A  G  P  E  K  K  N  A  V  V  S  D  E  K  K  K  L  V  A  Y  H   : E  A  G  H  A  L  V  G  A  L  M  P  E  Y  D  P  V  A  K  I  S  I  I  P  R  G  Q  A  G  G  L  T  F  F  A  P  S  E  E  R  L  E  S  G  L  Y  S  R  S  Y  L  E  N  Q  M  A  V  A  L  G  G  R :   V  A  E  E  V  I  F  G  Q  D  N  V  T  T  G  A  S  N  D  F  M  Q  V  S  R  V  A  R  Q  M  V  E  R  L  G  F  S  K  K  I  G  Q  V  A  I  G  G  G  G  G  N  P  F  L  G  Q  Q  :  M  S  T  Q  K  D  Y  S  M  A  T  A  D  V  V  D  A  E  V  R  E  L  V  E  K  A  Y  E  R  A  T  Q  I  I  T  T  H  I  D  I  L  H  K  L  A  Q  L  L  I  E  K  E  T  V  D  G  E  E  F  M  S  L  F  I  D  G  K  A  E  L  Y  I  S  *  F  H  Q  C  I  F  T  T  L  L  Y  *  Q  I  Y  I  Q  M  Y  T  L  R  N  L  F  F  I  F  *  Q  I  R  V  Q  N  *   </second_frame>
            <third_frame>   A  T  Q  T  N  I  Q  I  Y  G  F  Y  S  I  S  Q  E  L  A  K  T  N  S  L  F  F  A  Y  I  V  T  I  N  S  P  N  L  T  T  I  L  F  H  Q  W  P  M  L  Y  S  L  P  I  S  W  V  P  K  S  L  F  L  L  P  H  L  K  P  Q  G  I  S  I  F  T  P  E  E  S  I  *  F  L  N  Q  F  S  A  K  N  P  I  Q  I  I  S  R  M  F  H  L  K  L  L  *  L  L  Y  S  S  L  Q  S  P  H  K  L  L  L  L  I  I  Q  P  Q  Q  H  H  H  K  *  L  K  L  K  H  Q  N  L  V  P  Q  T  H  Y  P  L  L  K  I  S  F  *  M  L  Q  R  L  K  R  S  L  L  L  T  F  L  K  V  L  N  G  G  T  V  S  S  *  M  L  *  R  R  G  K  L  K  G  L  D  L  V  K  T  E  V  P  F  S  L  Q  L  *  M  G  V  E  L  M  *  L  C  L  M  T  R  I  *  S  I  F  W  R  *  M  V  L  I  Y  Q  F  L  K  V  K  G  V  M  G  C  L  V  L  L  G  T  C  C  S  L  L  L  L  L  L  G  C  F  S  F  S  G  G  L  R  A  A  Q  V  G  L  E  D  L  A  G  R  W  I  S  A  G  L  S  P  S  F  R  R  C  L  K  L  E  *  L  L  L  M  L  L  V  L  I  K  L  N  W  S  Y  R  K  W  L  I  S  *  K  I  L  I  S  I  L  L  *  V  L  R  Y  Q  K  G  V  F  *  L  V  H  Q  V  L  E  R  P  F  *  L  E  Q  *  L  V  R  L  V  C  H  F  S  L  V  Q  R  Q  S  L  L  S  C  L  W  V  W  E  L  L  E  L  G  I  C  L  R  R  R  S  L  K  H  L  V  L  C  L  L  M  R  L  M  L  W  E  G  K  E  V  Q  V  L  E  V  E  M  M  R  G  S  R  L  L  I  S  F  *  L  K  W  M  G  S  L  E  I  R  V  S  L  F  W  L  Q  L  T  G  L  M  F  L  I  L  P  C  *  D  L  E  G  L  I  D  K  *  L  W  I  G  L  M  L  L  V  E  S  G  F  F  R :   C  I  L  E  E  R  P  L  P  R  M  W  T  L  I  R  L  P  G  E  H  Q  V  S  P  V  Q  I  C  K  T  *  *  M  K  Q  P  S  L  Q  L  G  V  T  *  R  K  *  V  K  M  R  Y  P  M  L  *  R  G  *  L  L  A  R  R  R  K  M  L  L  S  Q  M  R  R  R  S  W  *  L  I  M  :  R  L  A  M  P  W  L  V  H  L  C  P  S  M  I  L  L  P  R  Y  L  *  F  L  E  A  K  P  V  V  S  P  S  L  P  P  A  K  K  D  L  S  R  A  C  T  A  G  A  I  *  R  I  K  W  Q  L  H  L  V  E   : E  L  L  R  R  L  F  L  D  K  T  T  *  Q  L  E  H  L  T  I  S  C  K  S  H  E  W  Q  G  R  W  L  R  D  *  D  S  A  K  R  *  A  K  L  P  L  E  E  V  V  E  T  R  S  *  A  N  R :   C  Q  P  R  K  T  T  P  W  Q  Q  P  M  W  S  M  L  K  *  G  N  W  L  K  R  R  T  K  E  L  H  K  S  S  Q  L  T  S  T  S  Y  T  S  L  L  S  C  *  *  R  K  K  L  L  M  V  K  S  S  *  A  F  S  L  M  A  R  L  S  Y  T  F  L  D  F  T  N  V  S  S  P  L  Y  C  I  N  K  Y  T  Y  K  C  T  H  *  E  I  Y  F  S  Y  F  D  K  S  E  C  K  T  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84829" stop="86196"/>
                    <exon start="86592" stop="86838"/>
                    <exon start="86929" stop="87112"/>
                    <exon start="87483" stop="87654"/>
                    <exon start="87731" stop="87952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2190</number_coding_nucleotides>
                  <number_encoded_amino_acids>730</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFIFCIYSYNKFPKFNNNLVPPMANAVLSSNFLGSQIFVSPPTPKTSRYFHLHSRRKYIVPQSILSKKSNSDNFKNVPSKAAIAALLFSSITPQAFALDNTTPAAPPQVIEAEAPKPSASNSLPFAQNIILNAPKTQAQPASDLPEGTQWRYSEFLNAVKKGKVERVRFSKDGSTLQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGEGGNGLFSVIGNLLFPIIAFAGLFFLFRRSQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVRILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVEKAYERATQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="93666" PGL_stop="87897"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93666" e_stop="93178"/>
            <exon e_start="92968" e_stop="92833"/>
            <exon e_start="92350" e_stop="92217"/>
            <exon e_start="92094" e_stop="91989"/>
            <exon e_start="90921" e_stop="90836"/>
            <exon e_start="90331" e_stop="90143"/>
            <exon e_start="89820" e_stop="89656"/>
            <exon e_start="89570" e_stop="89457"/>
            <exon e_start="88469" e_stop="87897"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.980"/>
          <exon-intron don_prob="0.976" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="93666" e_stop="93178" e_length="489"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93177" i_stop="92969" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92968" e_stop="92833" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.811">
            <gDNA_intron_boundary i_start="92832" i_stop="92351" i_length="482"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92350" e_stop="92217" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92216" i_stop="92095" i_length="122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="92094" e_stop="91989" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.716" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90921" e_stop="90836" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90331" e_stop="90143" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.959" acc_prob="0.985">
            <gDNA_intron_boundary i_start="90142" i_stop="89821" i_length="322"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="89820" e_stop="89656" e_length="165"/>
          </exon>
          <intron i_serial="7" don_prob="0.949" acc_prob="0.994">
            <gDNA_intron_boundary i_start="89655" i_stop="89571" i_length="85"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="89570" e_stop="89457" e_length="114"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.997">
            <gDNA_intron_boundary i_start="89456" i_stop="88470" i_length="987"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="88469" e_stop="87897" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93666" stop="93178"/>
              <exon start="92968" stop="92833"/>
              <exon start="92350" stop="92293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92956" stop="92833"/>
              <exon start="92350" stop="92217"/>
              <exon start="92094" stop="91989"/>
              <exon start="90921" stop="90836"/>
              <exon start="90331" stop="90192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92939" stop="92833"/>
              <exon start="92350" stop="92217"/>
              <exon start="92094" stop="91989"/>
              <exon start="90921" stop="90836"/>
              <exon start="90331" stop="90279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92285" stop="92217"/>
              <exon start="92094" stop="91989"/>
              <exon start="90921" stop="90836"/>
              <exon start="90331" stop="90143"/>
              <exon start="89820" stop="89656"/>
              <exon start="89570" stop="89541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90266" stop="90143"/>
              <exon start="89820" stop="89656"/>
              <exon start="89570" stop="89457"/>
              <exon start="88469" stop="88003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89725" stop="89656"/>
              <exon start="89570" stop="89457"/>
              <exon start="88469" stop="87897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCTGTATAATAATCCCAAAAAAAAAATAAAAAAAAAAGATTAAAAAAGCTATTTTTATGATTAATTTAATCATATAATAAAGTTGTATTCCTTTTTTTGTTGTTTTTTTTGGTTGGGTGAGGTTTAAGATTGGTTATGATGTTTAATTGAAGGGATTCTTGATTTGGGTCATCATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCG : GATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAGAGGTTGCTTGTAGCTGAGTACATGCCAAATGATACACTTGCAAAGCATCTATTTCACT : GGGAGAATCAAACCCTTGAGTGGGCTATGCGTTTAAGAGTGGCTCTATATATTGCTGAAGCATTGGACTACTGTAGCAGTGAAGGTCGACCACTATACCATGACTTGAATGCATATAGAGTTCTCTTTGATGAG : AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG : GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT : GCACTCGATATGATACGGGGAAAAAACATTCTTCTATTAATGGATTCACATTTGGAGGGAAATTTCTCTACAGAAGAGGCAACTGTTGTATTTGATCTGGCTTCACGATGCTTACAGTATGAACCCAGGGAGCGACCAAATACCAAAGACCTCGTTTCAACACTTGGTCCATTGCAAAGCAAACCTGAT : GTTGCATCTCATGTAATGTTGGGTATTCCCAAGAGTGAGGAAGCTCCACCAACTCCACAGCACCCTCTTTCTGCAATGGGTGATGCTTGTTCGAGAATGGATCTCACAGCTATTCATCAGATTTTGGTAATGACACATTATAAAGACGATGAACTGACAAATGAG : TTGTCTTTCCAAGAGTGGACTCAACAAATGAGGGATATGTTAGAGGCAAGAAAGCGTGGTGACTTGGCATTTCGGGACAAGGACTTTAAAACTGCCATAGATTGCTATTCTCAG : TTTGTAGATGTGGGAACGATGGTGTCTCCAACTGTTTATGCACGAAGAAGCCTTTGTTATCTCATGTGTGATCAACCAGATGCTGCCCTTAGAGATGCAATGCAAGCACAATGTGTTCACCCAGACTGGTCAACTGCATTTTACATGCAGGCAGTTGCCCTGTCGAAGCTAGACATGCACAAAGATGCAGCTGACATGTTGAATGAGGCTGCAATTCTAGAAGAGAAAAGACGCGGAGGGCGTGCATCTTGATAATACTCTCTCTTGTATCATTCTTTTGGCCCTATCAGTTATTCTTGTCATCACAAAATTAGCCCAAATTTCTGTATCATTTGTTTTGAGTGTGATTGTCTTAGAACTATGTATAACAAAGGAAGAGAATCATTTGCTCTATTGGTATATGCGTATGTCAGTTTTGCACTCTGATTTGTCAAAATATGAAAAATAAATTTCTCAATGTGTACATTTGTATGTATATTTGTTAATACAATAGAGTGGTGAAGATACATTGGTGAAATCAAGAAATGTATAGCTCAGCCTTGCCATCAATGAAAAGGCTCATGAACTCTTCAC</gDNA_template>
            <first_frame> S  C  I  I  I  P  K  K  K  *  K  K  K  I  K  K  A  I  F  M  I  N  L  I  I  *  *  S  C  I  P  F  F  V  V  F  F  G  W  V  R  F  K  I  G  Y  D  V  *  L  K  G  F  L  I  W  V  I  M  G  C  C  Q  S  S  I  L  K  E  L  S  S  E  K  D  Q  R  H  G  V  V  N  A  R  A  S  N  G  T  G  A  G  A  A  V  G  D  G  G  V  P  V  F  S  E  F  S  L  S  E  L  K  A  A  T  N  N  F  S  S  E  F  I  V  S  E  S  G  E  K  A  P  N  M  V  Y  K  G  R  L  Q  N  R  R  W  I  A  V  K  K  F  T  K  S  A  W  P  D  P  K  Q  F  A  :  D  E  A  S  G  V  G  N  L  R  H  K  R  L  A  N  L  I  G  Y  C  S  D  G  D  E  R  L  L  V  A  E  Y  M  P  N  D  T  L  A  K  H  L  F  H   : W  E  N  Q  T  L  E  W  A  M  R  L  R  V  A  L  Y  I  A  E  A  L  D  Y  C  S  S  E  G  R  P  L  Y  H  D  L  N  A  Y  R  V  L  F  D  E  :  S  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  Y  T  P  P  E  Y  L  R  N   : G  R  V  T  Q  E  S  V  V  F  S  Y  G  T  V  L  L  D  L  L  S  G  K  H  I  P  P  G  H  :  A  L  D  M  I  R  G  K  N  I  L  L  L  M  D  S  H  L  E  G  N  F  S  T  E  E  A  T  V  V  F  D  L  A  S  R  C  L  Q  Y  E  P  R  E  R  P  N  T  K  D  L  V  S  T  L  G  P  L  Q  S  K  P  D  :  V  A  S  H  V  M  L  G  I  P  K  S  E  E  A  P  P  T  P  Q  H  P  L  S  A  M  G  D  A  C  S  R  M  D  L  T  A  I  H  Q  I  L  V  M  T  H  Y  K  D  D  E  L  T  N  E  :  L  S  F  Q  E  W  T  Q  Q  M  R  D  M  L  E  A  R  K  R  G  D  L  A  F  R  D  K  D  F  K  T  A  I  D  C  Y  S  Q  :  F  V  D  V  G  T  M  V  S  P  T  V  Y  A  R  R  S  L  C  Y  L  M  C  D  Q  P  D  A  A  L  R  D  A  M  Q  A  Q  C  V  H  P  D  W  S  T  A  F  Y  M  Q  A  V  A  L  S  K  L  D  M  H  K  D  A  A  D  M  L  N  E  A  A  I  L  E  E  K  R  R  G  G  R  A  S  *  *  Y  S  L  L  Y  H  S  F  G  P  I  S  Y  S  C  H  H  K  I  S  P  N  F  C  I  I  C  F  E  C  D  C  L  R  T  M  Y  N  K  G  R  E  S  F  A  L  L  V  Y  A  Y  V  S  F  A  L  *  F  V  K  I  *  K  I  N  F  S  M  C  T  F  V  C  I  F  V  N  T  I  E  W  *  R  Y  I  G  E  I  K  K  C  I  A  Q  P  C  H  Q  *  K  G  S  *  T  L  H </first_frame>
            <second_frame>  A  V  *  *  S  Q  K  K  N  K  K  K  R  L  K  K  L  F  L  *  L  I  *  S  Y  N  K  V  V  F  L  F  L  L  F  F  L  V  G  *  G  L  R  L  V  M  M  F  N  *  R  D  S  *  F  G  S  S  W  V  V  V  N  L  Q  S  *  R  S  *  A  Q  R  K  I  S  V  M  G  W  *  T  H  E  L  L  T  A  P  A  P  E  L  L  S  E  M  V  G  F  R  C  F  L  S  F  R  F  L  S  S  K  Q  L  R  I  T  S  V  Q  N  L  L  F  L  K  V  E  K  R  L  R  I  W  F  T  R  G  G  C  R  I  G  G  G  S  L  L  R  S  L  L  N  R  H  G  L  I  L  N  S  L  R :   M  K  H  Q  V  L  E  I  *  G  I  K  G  W  L  I  *  L  G  T  A  L  M  G  M  R  G  C  L  *  L  S  T  C  Q  M  I  H  L  Q  S  I  Y  F  T  :  G  R  I  K  P  L  S  G  L  C  V  *  E  W  L  Y  I  L  L  K  H  W  T  T  V  A  V  K  V  D  H  Y  T  M  T  *  M  H  I  E  F  S  L  M  R :   V  A  I  P  V  F  L  V  L  G  *  *  K  I  A  G  M  V  K  V  I  A  R  T  L  R  I  H  L  L  S  I  *  E  M  :  E  E  S  L  K  K  V  L  F  S  A  M  E  L  S  F  W  T  C  *  V  E  N  I  F  L  L  V  M :   H  S  I  *  Y  G  E  K  T  F  F  Y  *  W  I  H  I  W  R  E  I  S  L  Q  K  R  Q  L  L  Y  L  I  W  L  H  D  A  Y  S  M  N  P  G  S  D  Q  I  P  K  T  S  F  Q  H  L  V  H  C  K  A  N  L  M :   L  H  L  M  *  C  W  V  F  P  R  V  R  K  L  H  Q  L  H  S  T  L  F  L  Q  W  V  M  L  V  R  E  W  I  S  Q  L  F  I  R  F  W  *  *  H  I  I  K  T  M  N  *  Q  M  S :   C  L  S  K  S  G  L  N  K  *  G  I  C  *  R  Q  E  S  V  V  T  W  H  F  G  T  R  T  L  K  L  P  *  I  A  I  L  S :   L  *  M  W  E  R  W  C  L  Q  L  F  M  H  E  E  A  F  V  I  S  C  V  I  N  Q  M  L  P  L  E  M  Q  C  K  H  N  V  F  T  Q  T  G  Q  L  H  F  T  C  R  Q  L  P  C  R  S  *  T  C  T  K  M  Q  L  T  C  *  M  R  L  Q  F  *  K  R  K  D  A  E  G  V  H  L  D  N  T  L  S  C  I  I  L  L  A  L  S  V  I  L  V  I  T  K  L  A  Q  I  S  V  S  F  V  L  S  V  I  V  L  E  L  C  I  T  K  E  E  N  H  L  L  Y  W  Y  M  R  M  S  V  L  H  S  D  L  S  K  Y  E  K  *  I  S  Q  C  V  H  L  Y  V  Y  L  L  I  Q  *  S  G  E  D  T  L  V  K  S  R  N  V  *  L  S  L  A  I  N  E  K  A  H  E  L  F   </second_frame>
            <third_frame>   L  Y  N  N  P  K  K  K  I  K  K  K  D  *  K  S  Y  F  Y  D  *  F  N  H  I  I  K  L  Y  S  F  F  C  C  F  F  W  L  G  E  V  *  D  W  L  *  C  L  I  E  G  I  L  D  L  G  H  H  G  L  L  S  I  F  N  L  E  G  V  E  L  R  E  R  S  A  S  W  G  G  K  R  T  S  F  *  R  H  R  R  R  S  C  C  R  R  W  W  G  S  G  V  F  *  V  F  A  F  *  A  Q  S  S  Y  E  *  L  Q  F  R  I  Y  C  F  *  K  W  R  K  G  S  E  Y  G  L  Q  G  E  V  A  E  S  A  V  D  R  C  *  E  V  Y  *  I  G  M  A  *  S  *  T  V  C   : G  *  S  I  R  C  W  K  F  E  A  *  K  A  G  *  F  N  W  V  L  L  *  W  G  *  E  V  A  C  S  *  V  H  A  K  *  Y  T  C  K  A  S  I  S  L :   G  E  S  N  P  *  V  G  Y  A  F  K  S  G  S  I  Y  C  *  S  I  G  L  L  *  Q  *  R  S  T  T  I  P  *  L  E  C  I  *  S  S  L  *  *   : E  W  R  S  P  S  F  L  F  W  A  D  E  K  *  Q  G  W  *  K  L  *  H  E  P  C  V  Y  T  S  *  V  F  K  K  W :   K  S  H  S  R  K  C  C  F  Q  L  W  N  C  P  F  G  L  A  K  W  K  T  Y  S  S  W  S   : C  T  R  Y  D  T  G  K  K  H  S  S  I  N  G  F  T  F  G  G  K  F  L  Y  R  R  G  N  C  C  I  *  S  G  F  T  M  L  T  V  *  T  Q  G  A  T  K  Y  Q  R  P  R  F  N  T  W  S  I  A  K  Q  T  *   : C  C  I  S  C  N  V  G  Y  S  Q  E  *  G  S  S  T  N  S  T  A  P  S  F  C  N  G  *  C  L  F  E  N  G  S  H  S  Y  S  S  D  F  G  N  D  T  L  *  R  R  *  T  D  K  *   : V  V  F  P  R  V  D  S  T  N  E  G  Y  V  R  G  K  K  A  W  *  L  G  I  S  G  Q  G  L  *  N  C  H  R  L  L  F  S   : V  C  R  C  G  N  D  G  V  S  N  C  L  C  T  K  K  P  L  L  S  H  V  *  S  T  R  C  C  P  *  R  C  N  A  S  T  M  C  S  P  R  L  V  N  C  I  L  H  A  G  S  C  P  V  E  A  R  H  A  Q  R  C  S  *  H  V  E  *  G  C  N  S  R  R  E  K  T  R  R  A  C  I  L  I  I  L  S  L  V  S  F  F  W  P  Y  Q  L  F  L  S  S  Q  N  *  P  K  F  L  Y  H  L  F  *  V  *  L  S  *  N  Y  V  *  Q  R  K  R  I  I  C  S  I  G  I  C  V  C  Q  F  C  T  L  I  C  Q  N  M  K  N  K  F  L  N  V  Y  I  C  M  Y  I  C  *  Y  N  R  V  V  K  I  H  W  *  N  Q  E  M  Y  S  S  A  L  P  S  M  K  R  L  M  N  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93519" stop="93178"/>
                    <exon start="92968" stop="92833"/>
                    <exon start="92350" stop="92217"/>
                    <exon start="92094" stop="91989"/>
                    <exon start="90921" stop="90836"/>
                    <exon start="90331" stop="90143"/>
                    <exon start="89820" stop="89656"/>
                    <exon start="89570" stop="89457"/>
                    <exon start="88469" stop="88218"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1521</number_coding_nucleotides>
                  <number_encoded_amino_acids>507</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKGFLIWVIMGCCQSSILKELSSEKDQRHGVVNARASNGTGAGAAVGDGGVPVFSEFSLSELKAATNNFSSEFIVSESGEKAPNMVYKGRLQNRRWIAVKKFTKSAWPDPKQFADEASGVGNLRHKRLANLIGYCSDGDERLLVAEYMPNDTLAKHLFHWENQTLEWAMRLRVALYIAEALDYCSSEGRPLYHDLNAYRVLFDESGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTQESVVFSYGTVLLDLLSGKHIPPGHALDMIRGKNILLLMDSHLEGNFSTEEATVVFDLASRCLQYEPRERPNTKDLVSTLGPLQSKPDVASHVMLGIPKSEEAPPTPQHPLSAMGDACSRMDLTAIHQILVMTHYKDDELTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTAIDCYSQFVDVGTMVSPTVYARRSLCYLMCDQPDAALRDAMQAQCVHPDWSTAFYMQAVALSKLDMHKDAADMLNEAAILEEKRRGGRAS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88249" stop="88022"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRKDAEGVHLDNTLSCIILLALSVILVITKLAQISVSFVLSVIVLELCITKEENHLLYWYMRMSVLHSDLSKYEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93492" e_stop="93178"/>
            <exon e_start="92968" e_stop="92891"/>
            <exon e_start="92094" e_stop="91989"/>
            <exon e_start="90921" e_stop="90836"/>
            <exon e_start="90331" e_stop="90296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.716" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.989" e_score="0.965"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93492" e_stop="93178" e_length="315"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93177" i_stop="92969" i_length="209"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92968" e_stop="92891" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="92890" i_stop="92095" i_length="796"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="92094" e_stop="91989" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.716" acc_prob="0.996">
            <gDNA_intron_boundary i_start="91988" i_stop="90922" i_length="1067"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="90921" e_stop="90836" e_length="86"/>
          </exon>
          <intron i_serial="4" don_prob="0.965" acc_prob="0.989">
            <gDNA_intron_boundary i_start="90835" i_stop="90332" i_length="504"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="90331" e_stop="90296" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93492" stop="93178"/>
              <exon start="92968" stop="92891"/>
              <exon start="92094" stop="91989"/>
              <exon start="90921" stop="90836"/>
              <exon start="90331" stop="90296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731206" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGGTTGTTGTCAATCTTCAATCTTGAAGGAGTTGAGCTCAGAGAAAGATCAGCGTCATGGGGTGGTAAACGCACGAGCTTCTAACGGCACCGGCGCCGGAGCTGCTGTCGGAGATGGTGGGGTTCCGGTGTTTTCTGAGTTTTCGCTTTCTGAGCTCAAAGCAGCTACGAATAACTTCAGTTCAGAATTTATTGTTTCTGAAAGTGGAGAAAAGGCTCCGAATATGGTTTACAAGGGGAGGTTGCAGAATCGGCGGTGGATCGCTGTTAAGAAGTTTACTAAATCGGCATGGCCTGATCCTAAACAGTTTGCG : GATGAAGCATCAGGTGTTGGAAATTTGAGGCATAAAAGGCTGGCTAATTTAATTGGGTACTGCTCTGATGGGGATGAG : AGTGGCGATCCCCGTCTTTCTTGTTTTGGGCTGATGAAAAATAGCAGGGATGGTAAAAGTTATAGCACGAACCTTGCGTATACACCTCCTGAGTATTTAAGAAATG : GAAGAGTCACTCAAGAAAGTGTTGTTTTCAGCTATGGAACTGTCCTTTTGGACTTGCTAAGTGGAAAACATATTCCTCCTGGTCAT : GCACTCGATATGATACGGGGAAAAAACATTCTTCTA</gDNA_template>
            <first_frame> M  G  C  C  Q  S  S  I  L  K  E  L  S  S  E  K  D  Q  R  H  G  V  V  N  A  R  A  S  N  G  T  G  A  G  A  A  V  G  D  G  G  V  P  V  F  S  E  F  S  L  S  E  L  K  A  A  T  N  N  F  S  S  E  F  I  V  S  E  S  G  E  K  A  P  N  M  V  Y  K  G  R  L  Q  N  R  R  W  I  A  V  K  K  F  T  K  S  A  W  P  D  P  K  Q  F  A  :  D  E  A  S  G  V  G  N  L  R  H  K  R  L  A  N  L  I  G  Y  C  S  D  G  D  E  :  S  G  D  P  R  L  S  C  F  G  L  M  K  N  S  R  D  G  K  S  Y  S  T  N  L  A  Y  T  P  P  E  Y  L  R  N   : G  R  V  T  Q  E  S  V  V  F  S  Y  G  T  V  L  L  D  L  L  S  G  K  H  I  P  P  G  H  :  A  L  D  M  I  R  G  K  N  I  L  L </first_frame>
            <second_frame>  W  V  V  V  N  L  Q  S  *  R  S  *  A  Q  R  K  I  S  V  M  G  W  *  T  H  E  L  L  T  A  P  A  P  E  L  L  S  E  M  V  G  F  R  C  F  L  S  F  R  F  L  S  S  K  Q  L  R  I  T  S  V  Q  N  L  L  F  L  K  V  E  K  R  L  R  I  W  F  T  R  G  G  C  R  I  G  G  G  S  L  L  R  S  L  L  N  R  H  G  L  I  L  N  S  L  R :   M  K  H  Q  V  L  E  I  *  G  I  K  G  W  L  I  *  L  G  T  A  L  M  G  M  R :   V  A  I  P  V  F  L  V  L  G  *  *  K  I  A  G  M  V  K  V  I  A  R  T  L  R  I  H  L  L  S  I  *  E  M  :  E  E  S  L  K  K  V  L  F  S  A  M  E  L  S  F  W  T  C  *  V  E  N  I  F  L  L  V  M :   H  S  I  *  Y  G  E  K  T  F  F   </second_frame>
            <third_frame>   G  L  L  S  I  F  N  L  E  G  V  E  L  R  E  R  S  A  S  W  G  G  K  R  T  S  F  *  R  H  R  R  R  S  C  C  R  R  W  W  G  S  G  V  F  *  V  F  A  F  *  A  Q  S  S  Y  E  *  L  Q  F  R  I  Y  C  F  *  K  W  R  K  G  S  E  Y  G  L  Q  G  E  V  A  E  S  A  V  D  R  C  *  E  V  Y  *  I  G  M  A  *  S  *  T  V  C   : G  *  S  I  R  C  W  K  F  E  A  *  K  A  G  *  F  N  W  V  L  L  *  W  G  *   : E  W  R  S  P  S  F  L  F  W  A  D  E  K  *  Q  G  W  *  K  L  *  H  E  P  C  V  Y  T  S  *  V  F  K  K  W :   K  S  H  S  R  K  C  C  F  Q  L  W  N  C  P  F  G  L  A  K  W  K  T  Y  S  S  W  S   : C  T  R  Y  D  T  G  K  K  H  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93492" stop="93178"/>
                    <exon start="92968" stop="92891"/>
                    <exon start="92094" stop="91989"/>
                    <exon start="90921" stop="90836"/>
                    <exon start="90331" stop="90296"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGCCQSSILKELSSEKDQRHGVVNARASNGTGAGAAVGDGGVPVFSEFSLSELKAATNNFSSEFIVSESGEKAPNMVYKGRLQNRRWIAVKKFTKSAWPDPKQFADEASGVGNLRHKRLANLIGYCSDGDESGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTQESVVFSYGTVLLDLLSGKHIPPGHALDMIRGKNILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="99710" PGL_stop="98370"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99709" e_stop="99267"/>
            <exon e_start="98929" e_stop="98370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.997"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="99709" e_stop="99267" e_length="443"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99266" i_stop="98930" i_length="337"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="98929" e_stop="98370" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99709" stop="99314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99475" stop="99267"/>
              <exon start="98929" stop="98370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99466" stop="99267"/>
              <exon start="98929" stop="98623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99454" stop="99267"/>
              <exon start="98929" stop="98547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTGGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAG : GTAGCTGTGAGGCGTAAAGATGAATCTAAGATTGCTTCGTATGCTAAAGCACTGAGAAAAATGGCTAAGGAAATGGATAAACTTGCGTTGAATGTACAATGTATAGGGAAATATATTATACCTCAACAAACTATACCAATCCCAGATGGAGATGCAGAGTTAGCAGAAGTGATGAAAGACATAATAGAAGTAACACAATTAGTTTCAATTGCACTTTTTAATGGACTTGGAGTATCAATGGCATATGCAAAACCATCATGTTCATGGATTGGATTAGGAAAGAAGACAAAAAAATTGAAAGAAAATGAAGGAATTGTGGAATTTGTAGAAATGGAATTGGAGAATTTGTTGAGAAAAAATAAAGGAGATGAAGAGGTGAAAATTGTGACTAAAAAAATGCATGAATTGGAAGATTGTATTTGTGGGATTGAAAATTGTGGGGAGAAAGTGTTTAGGAGTTTAATTAATGCTAGAGTTTCATTGCTTAATGTATTCACACAATAGAGAAAGAAAATTAAAGATGATGCATACATGTATATTTTGCTTTATTGTATTTTTTT</gDNA_template>
            <first_frame> K  W  E  K  K  K  H  Y  Q  N  R  E  Q  W  L  L  E  W  W  L  I  F  A  D  L  F  L  S  Q  I  T  Q  I  T  Q  I  N  P  K  N  P  S  M  F  D  L  L  V  C  H  V  D  L  I  H  *  F  L  S  S  K  M  I  *  T  S  S  N  H  G  L  L  S  P  K  I  E  L  Q  I  G  F  V  M  D  S  I  N  S  K  L  F  M  N  L  S  M  I  C  F  F  F  H  K  H  V  N  H  *  T  D  I  P  I  W  S  R  S  F  *  M  I  S  F  T  S  S  T  F  M  E  S  S  R  R  *  Y  S  L  S  R  K  N  I  *  Q  L  R :   *  L  *  G  V  K  M  N  L  R  L  L  R  M  L  K  H  *  E  K  W  L  R  K  W  I  N  L  R  *  M  Y  N  V  *  G  N  I  L  Y  L  N  K  L  Y  Q  S  Q  M  E  M  Q  S  *  Q  K  *  *  K  T  *  *  K  *  H  N  *  F  Q  L  H  F  L  M  D  L  E  Y  Q  W  H  M  Q  N  H  H  V  H  G  L  D  *  E  R  R  Q  K  N  *  K  K  M  K  E  L  W  N  L  *  K  W  N  W  R  I  C  *  E  K  I  K  E  M  K  R  *  K  L  *  L  K  K  C  M  N  W  K  I  V  F  V  G  L  K  I  V  G  R  K  C  L  G  V  *  L  M  L  E  F  H  C  L  M  Y  S  H  N  R  E  R  K  L  K  M  M  H  T  C  I  F  C  F  I  V  F  F  </first_frame>
            <second_frame>  N  G  K  R  K  N  T  I  K  I  E  N  N  G  S  S  N  G  G  *  F  S  Q  I  S  F  F  P  K  S  P  K  S  L  K  *  T  Q  K  I  L  P  C  S  I  C  *  S  A  M  S  I  S  S  I  N  F  S  A  Q  R  *  F  K  R  A  Q  I  M  G  F  *  A  P  K  S  N  F  K  L  D  L  *  W  T  Q  S  T  Q  N  C  S  *  I  S  R  *  S  A  S  S  S  T  N  T  *  I  I  K  R  T  F  R  F  G  R  E  A  S  R  *  F  P  S  L  R  R  R  L  W  N  L  P  D  V  D  T  H  F  Q  G  R  T  F  S  S  S   : G  S  C  E  A  *  R  *  I  *  D  C  F  V  C  *  S  T  E  K  N  G  *  G  N  G  *  T  C  V  E  C  T  M  Y  R  E  I  Y  Y  T  S  T  N  Y  T  N  P  R  W  R  C  R  V  S  R  S  D  E  R  H  N  R  S  N  T  I  S  F  N  C  T  F  *  W  T  W  S  I  N  G  I  C  K  T  I  M  F  M  D  W  I  R  K  E  D  K  K  I  E  R  K  *  R  N  C  G  I  C  R  N  G  I  G  E  F  V  E  K  K  *  R  R  *  R  G  E  N  C  D  *  K  N  A  *  I  G  R  L  Y  L  W  D  *  K  L  W  G  E  S  V  *  E  F  N  *  C  *  S  F  I  A  *  C  I  H  T  I  E  K  E  N  *  R  *  C  I  H  V  Y  F  A  L  L  Y  F  F </second_frame>
            <third_frame>   M  G  K  E  K  T  L  S  K  S  R  T  M  A  P  R  M  V  A  N  F  R  R  S  L  S  F  P  N  H  P  N  H  S  N  K  P  K  K  S  F  H  V  R  S  A  S  L  P  C  R  S  H  P  L  I  S  Q  L  K  D  D  L  N  E  L  K  S  W  A  F  K  P  Q  N  R  T  S  N  W  I  C  D  G  L  N  Q  L  K  I  V  H  E  S  L  D  D  L  L  L  L  P  Q  T  R  E  S  L  N  G  H  S  D  L  V  E  K  L  L  D  D  F  L  H  F  V  D  V  Y  G  I  F  Q  T  L  I  L  T  F  K  E  E  H  L  A  A  Q  :  V  A  V  R  R  K  D  E  S  K  I  A  S  Y  A  K  A  L  R  K  M  A  K  E  M  D  K  L  A  L  N  V  Q  C  I  G  K  Y  I  I  P  Q  Q  T  I  P  I  P  D  G  D  A  E  L  A  E  V  M  K  D  I  I  E  V  T  Q  L  V  S  I  A  L  F  N  G  L  G  V  S  M  A  Y  A  K  P  S  C  S  W  I  G  L  G  K  K  T  K  K  L  K  E  N  E  G  I  V  E  F  V  E  M  E  L  E  N  L  L  R  K  N  K  G  D  E  E  V  K  I  V  T  K  K  M  H  E  L  E  D  C  I  C  G  I  E  N  C  G  E  K  V  F  R  S  L  I  N  A  R  V  S  L  L  N  V  F  T  Q  *  R  K  K  I  K  D  D  A  Y  M  Y  I  L  L  Y  C  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99707" stop="99267"/>
                    <exon start="98929" stop="98426"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGKEKTLSKSRTMAPRMVANFRRSLSFPNHPNHSNKPKKSFHVRSASLPCRSHPLISQLKDDLNELKSWAFKPQNRTSNWICDGLNQLKIVHESLDDLLLLPQTRESLNGHSDLVEKLLDDFLHFVDVYGIFQTLILTFKEEHLAAQVAVRRKDESKIASYAKALRKMAKEMDKLALNVQCIGKYIIPQQTIPIPDGDAELAEVMKDIIEVTQLVSIALFNGLGVSMAYAKPSCSWIGLGKKTKKLKENEGIVEFVEMELENLLRKNKGDEEVKIVTKKMHELEDCICGIENCGEKVFRSLINARVSLLNVFTQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99710" e_stop="98970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="99710" e_stop="98970" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99710" stop="98970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99709" stop="99314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATGGGAAAAGAAAAAACACTATCAAAATCGAGAACAATGGCTCCTCGAATGGTGGCTAATTTTCGCAGATCTCTTTCTTTCCCAAATCACCCAAATCACTCAAATAAACCCAAAAAATCCTTCCATGTTCGATCTGCTAGTCTGCCATGTCGATCTCATCCATTAATTTCTCAGCTCAAAGATGATTTAAACGAGCTCAAATCATGGGCTTTTAAGCCCCAAAATCGAACTTCAAATTGGATTTGTGATGGACTCAATCAACTCAAAATTGTTCATGAATCTCTCGATGATCTGCTTCTTCTTCCACAAACACGTGAATCATTAAACGGACATTCCGATTTGGTCGAGAAGCTTCTAGATGATTTCCTTCACTTCGTCGACGTTTATGGAATCTTCCAGACGTTGATACTCACTTTCAAGGAAGAACATTTAGCAGCTCAGGTACGATAATTTTATTTACTTAATTATATGGCCGAAAATTTAAATATAATAAAATAGACTTTCCGATCATATTTTTTAAATACTATTGTCCGCGCCTTTGCATAAAATGGCCTTTTTTTTATTTCATTTTTTAAATTTTGTTCCCAATTAGCTAAGTGGGCTAAAGGATCAGTAATTCACCGCTACTAGATTGGAGAATTCCACCTTATTATCCATTAATTGTATAAGTTCATTATTTTTCATACAAATTCTCGAGGTATCAAATCTTTGATAATGTGTGTGATTATAATGTTTATA</gDNA_template>
            <first_frame> K  M  G  K  E  K  T  L  S  K  S  R  T  M  A  P  R  M  V  A  N  F  R  R  S  L  S  F  P  N  H  P  N  H  S  N  K  P  K  K  S  F  H  V  R  S  A  S  L  P  C  R  S  H  P  L  I  S  Q  L  K  D  D  L  N  E  L  K  S  W  A  F  K  P  Q  N  R  T  S  N  W  I  C  D  G  L  N  Q  L  K  I  V  H  E  S  L  D  D  L  L  L  L  P  Q  T  R  E  S  L  N  G  H  S  D  L  V  E  K  L  L  D  D  F  L  H  F  V  D  V  Y  G  I  F  Q  T  L  I  L  T  F  K  E  E  H  L  A  A  Q  V  R  *  F  Y  L  L  N  Y  M  A  E  N  L  N  I  I  K  *  T  F  R  S  Y  F  L  N  T  I  V  R  A  F  A  *  N  G  L  F  F  I  S  F  F  K  F  C  S  Q  L  A  K  W  A  K  G  S  V  I  H  R  Y  *  I  G  E  F  H  L  I  I  H  *  L  Y  K  F  I  I  F  H  T  N  S  R  G  I  K  S  L  I  M  C  V  I  I  M  F  I </first_frame>
            <second_frame>  K  W  E  K  K  K  H  Y  Q  N  R  E  Q  W  L  L  E  W  W  L  I  F  A  D  L  F  L  S  Q  I  T  Q  I  T  Q  I  N  P  K  N  P  S  M  F  D  L  L  V  C  H  V  D  L  I  H  *  F  L  S  S  K  M  I  *  T  S  S  N  H  G  L  L  S  P  K  I  E  L  Q  I  G  F  V  M  D  S  I  N  S  K  L  F  M  N  L  S  M  I  C  F  F  F  H  K  H  V  N  H  *  T  D  I  P  I  W  S  R  S  F  *  M  I  S  F  T  S  S  T  F  M  E  S  S  R  R  *  Y  S  L  S  R  K  N  I  *  Q  L  R  Y  D  N  F  I  Y  L  I  I  W  P  K  I  *  I  *  *  N  R  L  S  D  H  I  F  *  I  L  L  S  A  P  L  H  K  M  A  F  F  L  F  H  F  L  N  F  V  P  N  *  L  S  G  L  K  D  Q  *  F  T  A  T  R  L  E  N  S  T  L  L  S  I  N  C  I  S  S  L  F  F  I  Q  I  L  E  V  S  N  L  *  *  C  V  *  L  *  C  L   </second_frame>
            <third_frame>   N  G  K  R  K  N  T  I  K  I  E  N  N  G  S  S  N  G  G  *  F  S  Q  I  S  F  F  P  K  S  P  K  S  L  K  *  T  Q  K  I  L  P  C  S  I  C  *  S  A  M  S  I  S  S  I  N  F  S  A  Q  R  *  F  K  R  A  Q  I  M  G  F  *  A  P  K  S  N  F  K  L  D  L  *  W  T  Q  S  T  Q  N  C  S  *  I  S  R  *  S  A  S  S  S  T  N  T  *  I  I  K  R  T  F  R  F  G  R  E  A  S  R  *  F  P  S  L  R  R  R  L  W  N  L  P  D  V  D  T  H  F  Q  G  R  T  F  S  S  S  G  T  I  I  L  F  T  *  L  Y  G  R  K  F  K  Y  N  K  I  D  F  P  I  I  F  F  K  Y  Y  C  P  R  L  C  I  K  W  P  F  F  Y  F  I  F  *  I  L  F  P  I  S  *  V  G  *  R  I  S  N  S  P  L  L  D  W  R  I  P  P  Y  Y  P  L  I  V  *  V  H  Y  F  S  Y  K  F  S  R  Y  Q  I  F  D  N  V  C  D  Y  N  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99710" stop="99258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMGKEKTLSKSRTMAPRMVANFRRSLSFPNHPNHSNKPKKSFHVRSASLPCRSHPLISQLKDDLNELKSWAFKPQNRTSNWICDGLNQLKIVHESLDDLLLLPQTRESLNGHSDLVEKLLDDFLHFVDVYGIFQTLILTFKEEHLAAQVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="105713" PGL_stop="106171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105713" e_stop="106171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="105713" e_stop="106171" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105713" stop="106171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274977" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTACAAGACTACTTAGTATCCATGAGATATTCAACAACAAAAAAAGACCTGTATTTGTCTACAGAAAATCTAAGGTTTTGTAGACCTGTAGATGGACGTAGAAAAAACTGCGTGGGAGGCTAGAAAACTATACATAGTTTACTAAACTATAATGGGTTTGGTGATAAACCTAATCGACAAATTTGAGACACTGGAGGAGCCTCCCAATAAGCAGTTTTTTTCATTAATTCTGCGAAATCTTTCACACACTGCTCCATTTTTAGATTTTCAACTCGTTGTCTTGCTGCAGCCAGTTTATTACCTGCCACTTGGTCGAATATTTTCTCCCAACCACTCTCCCACTCAGCATGGGCATCACAGAGCTGAAGGGTGTTATTGGTCCAGTCAGTCCAGCTCCATCCTCTGTACAGTTTATTCATCGTGAGCCCAACACAGTGGTGAGTGCACGGAGGTGTGCA</gDNA_template>
            <first_frame> A  T  R  L  L  S  I  H  E  I  F  N  N  K  K  R  P  V  F  V  Y  R  K  S  K  V  L  *  T  C  R  W  T  *  K  K  L  R  G  R  L  E  N  Y  T  *  F  T  K  L  *  W  V  W  *  *  T  *  S  T  N  L  R  H  W  R  S  L  P  I  S  S  F  F  H  *  F  C  E  I  F  H  T  L  L  H  F  *  I  F  N  S  L  S  C  C  S  Q  F  I  T  C  H  L  V  E  Y  F  L  P  T  T  L  P  L  S  M  G  I  T  E  L  K  G  V  I  G  P  V  S  P  A  P  S  S  V  Q  F  I  H  R  E  P  N  T  V  V  S  A  R  R  C  A </first_frame>
            <second_frame>  L  Q  D  Y  L  V  S  M  R  Y  S  T  T  K  K  D  L  Y  L  S  T  E  N  L  R  F  C  R  P  V  D  G  R  R  K  N  C  V  G  G  *  K  T  I  H  S  L  L  N  Y  N  G  F  G  D  K  P  N  R  Q  I  *  D  T  G  G  A  S  Q  *  A  V  F  F  I  N  S  A  K  S  F  T  H  C  S  I  F  R  F  S  T  R  C  L  A  A  A  S  L  L  P  A  T  W  S  N  I  F  S  Q  P  L  S  H  S  A  W  A  S  Q  S  *  R  V  L  L  V  Q  S  V  Q  L  H  P  L  Y  S  L  F  I  V  S  P  T  Q  W  *  V  H  G  G  V   </second_frame>
            <third_frame>   Y  K  T  T  *  Y  P  *  D  I  Q  Q  Q  K  K  T  C  I  C  L  Q  K  I  *  G  F  V  D  L  *  M  D  V  E  K  T  A  W  E  A  R  K  L  Y  I  V  Y  *  T  I  M  G  L  V  I  N  L  I  D  K  F  E  T  L  E  E  P  P  N  K  Q  F  F  S  L  I  L  R  N  L  S  H  T  A  P  F  L  D  F  Q  L  V  V  L  L  Q  P  V  Y  Y  L  P  L  G  R  I  F  S  P  N  H  S  P  T  Q  H  G  H  H  R  A  E  G  C  Y  W  S  S  Q  S  S  S  I  L  C  T  V  Y  S  S  *  A  Q  H  S  G  E  C  T  E  V  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105859" stop="106137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIMGLVINLIDKFETLEEPPNKQFFSLILRNLSHTAPFLDFQLVVLLQPVYYLPLGRIFSPNHSPTQHGHHRAEGCYWSSQSSSILCTVYSS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105977" stop="106171"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFNSLSCCSQFITCHLVEYFLPTTLPLSMGITELKGVIGPVSPAPSSVQFIHREPNTVVSARRCA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="112409" PGL_stop="109351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112409" e_stop="112348"/>
            <exon e_start="112261" e_stop="112136"/>
            <exon e_start="111503" e_stop="111382"/>
            <exon e_start="111162" e_stop="111123"/>
            <exon e_start="111015" e_stop="110941"/>
            <exon e_start="110717" e_stop="110415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.701" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112409" e_stop="112348" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.701" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112347" i_stop="112262" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112261" e_stop="112136" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.837" acc_prob="0.982">
            <gDNA_intron_boundary i_start="112135" i_stop="111504" i_length="632"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111503" e_stop="111382" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111162" e_stop="111123" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="111015" e_stop="110941" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="110717" e_stop="110415" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112409" stop="112348"/>
              <exon start="112261" stop="112136"/>
              <exon start="111503" stop="111382"/>
              <exon start="111162" stop="111123"/>
              <exon start="111015" stop="110941"/>
              <exon start="110717" stop="110416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111503" stop="111382"/>
              <exon start="111162" stop="111123"/>
              <exon start="111015" stop="110941"/>
              <exon start="110717" stop="110425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110716" stop="110415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110715" stop="110425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110715" stop="110425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGGAGTGCACAAAAACAAGCAAAATCAGGCACTGAGAACGCTGGGTGGTATGAAAATTG : GTGGGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGGGCACACAAATATGGCAGATTAAACGAACAATCGTGGTGGGAGAAATGGGGAGAACATTATGATGGAAGAGGATCTGTTCTTAAATG : GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATA : GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG : CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA : GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAAATCATATTTG</gDNA_template>
            <first_frame> E  R  S  A  Q  K  Q  A  K  S  G  T  E  N  A  G  W  Y  E  N  W :   W  E  K  Y  D  A  K  G  W  T  E  K  G  A  H  K  Y  G  R  L  N  E  Q  S  W  W  E  K  W  G  E  H  Y  D  G  R  G  S  V  L  K  W :   T  D  K  W  A  E  T  E  L  G  T  K  W  G  D  K  W  E  E  K  F  F  A  G  I  G  S  R  Q  G  E  T  W  H  V  S  P  V  G  D   : R  W  S  R  T  W  G  E  E  H  F  G  N  G :   K  V  H  K  Y  G  K  S  T  T  G  E  S  W  D  I  V  V  D  E  G  T  Y  Y  E :   A  E  P  H  Y  G  W  A  D  V  V  G  N  S  S  Q  L  L  S  I  Q  P  R  D  R  P  P  G  V  F  P  S  M  D  F  G  P  S  L  P  P  E  D  E  L  P  P  T  L  S  Q  *  Q  V  G  F  F  S  N  K  V  D  V  D  A  S  W  Q  I  F  R  F  *  L  *  L  S  T  L  D  V  T  K  H  T  L  P  I  H  L  V  H  S  F  R  D  L  N  H  I   </first_frame>
            <second_frame>  K  G  V  H  K  N  K  Q  N  Q  A  L  R  T  L  G  G  M  K  I   : G  G  K  S  M  M  Q  R  V  G  Q  R  K  G  H  T  N  M  A  D  *  T  N  N  R  G  G  R  N  G  E  N  I  M  M  E  E  D  L  F  L  N   : G  Q  I  S  G  R  K  L  S  L  E  Q  N  G  E  T  S  G  K  R  N  F  S  L  E  L  V  R  G  K  E  R  L  G  M  C  H  P  L  V  I  :  D  G  L  G  H  G  E  R  S  T  S  E  M   : A  K  C  T  S  T  A  R  A  R  Q  V  K  V  G  T  S  L  W  M  K  E  L  T  T   : R  L  N  L  T  T  D  G  Q  M  L  *  A  I  H  P  S  Y  C  Q  S  N  L  E  T  D  R  P  V  C  S  H  Q  W  I  L  V  H  L  C  L  Q  K  M  S  C  L  P  P  C  H  N  D  K  L  V  S  S  Q  T  R  L  M  L  M  L  V  G  K  F  S  D  F  D  C  N  C  Q  L  S  M  *  Q  N  I  L  C  L  F  I  *  F  I  L  L  E  I  *  I  I  F  </second_frame>
            <third_frame>   K  E  C  T  K  T  S  K  I  R  H  *  E  R  W  V  V  *  K  L  :  V  G  K  V  *  C  K  G  L  D  R  E  R  G  T  Q  I  W  Q  I  K  R  T  I  V  V  G  E  M  G  R  T  L  *  W  K  R  I  C  S  *  M  :  D  R  *  V  G  G  N  *  A  W  N  K  M  G  R  Q  V  G  R  E  I  F  R  W  N  W  F  A  A  R  R  D  L  A  C  V  T  R  W  *  * :   M  V  *  D  M  G  R  G  A  L  R  K  W  :  Q  S  A  Q  V  R  Q  E  H  D  R  *  K  L  G  H  R  C  G  *  R  N  L  L  R  :  G  *  T  S  L  R  M  G  R  C  C  R  Q  F  I  P  V  I  V  N  P  T  S  R  Q  T  A  R  C  V  P  I  N  G  F  W  S  I  S  A  S  R  R  *  V  A  S  H  L  V  T  M  T  S  W  F  L  L  K  Q  G  *  C  *  C  *  L  A  N  F  Q  I  L  I  V  I  V  N  S  R  C  D  K  T  Y  F  A  Y  S  F  S  S  F  F  *  R  F  K  S  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112409" stop="112348"/>
                    <exon start="112261" stop="112136"/>
                    <exon start="111503" stop="111382"/>
                    <exon start="111162" stop="111123"/>
                    <exon start="111015" stop="110941"/>
                    <exon start="110717" stop="110561"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERSAQKQAKSGTENAGWYENWWEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEHYDGRGSVLKWTDKWAETELGTKWGDKWEEKFFAGIGSRQGETWHVSPVGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDIVVDEGTYYEAEPHYGWADVVGNSSQLLSIQPRDRPPGVFPSMDFGPSLPPEDELPPTLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="111503" e_stop="111382"/>
            <exon e_start="111162" e_stop="111123"/>
            <exon e_start="111015" e_stop="110941"/>
            <exon e_start="110717" e_stop="110425"/>
            <exon e_start="109376" e_stop="109351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.808"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111503" e_stop="111382" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.995">
            <gDNA_intron_boundary i_start="111381" i_stop="111163" i_length="219"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111162" e_stop="111123" e_length="40"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111122" i_stop="111016" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111015" e_stop="110941" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.803" acc_prob="1.000">
            <gDNA_intron_boundary i_start="110940" i_stop="110718" i_length="223"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110717" e_stop="110425" e_length="293"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="110424" i_stop="109377" i_length="1048"/>
          </intron>
          <exon e_serial="5" e_score="0.808">
            <gDNA_exon_boundary e_start="109376" e_stop="109351" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111503" stop="111382"/>
              <exon start="111162" stop="111123"/>
              <exon start="111015" stop="110941"/>
              <exon start="110717" stop="110425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111412" stop="111382"/>
              <exon start="111162" stop="111123"/>
              <exon start="111015" stop="110941"/>
              <exon start="110717" stop="110425"/>
              <exon start="109376" stop="109351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110715" stop="110425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110715" stop="110425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAGATAAGTGGGCGGAAACTGAGCTTGGAACAAAATGGGGAGACAAGTGGGAAGAGAAATTTTTCGCTGGAATTGGTTCGCGGCAAGGAGAGACTTGGCATGTGTCACCCGTTGGTGATA : GATGGTCTAGGACATGGGGAGAGGAGCACTTCGGAAATGG : CAAAGTGCACAAGTACGGCAAGAGCACGACAGGTGAAAGTTGGGACATCGTTGTGGATGAAGGAACTTACTACGA : GGCTGAACCTCACTACGGATGGGCAGATGTTGTAGGCAATTCATCCCAGTTATTGTCAATCCAACCTCGAGACAGACCGCCCGGTGTGTTCCCATCAATGGATTTTGGTCCATCTCTGCCTCCAGAAGATGAGTTGCCTCCCACCTTGTCACAATGACAAGTTGGTTTCTTCTCAAACAAGGTTGATGTTGATGCTAGTTGGCAAATTTTCAGATTTTGATTGTAATTGTCAACTCTCGATGTGACAAAACATACTTTGCCTATTCATTTAGTTCATTCTTTTAGAGATTTAA : ATCAAAAAAAAGAAAAGAAAAAAGAA</gDNA_template>
            <first_frame> D  R  *  V  G  G  N  *  A  W  N  K  M  G  R  Q  V  G  R  E  I  F  R  W  N  W  F  A  A  R  R  D  L  A  C  V  T  R  W  *  * :   M  V  *  D  M  G  R  G  A  L  R  K  W  :  Q  S  A  Q  V  R  Q  E  H  D  R  *  K  L  G  H  R  C  G  *  R  N  L  L  R  :  G  *  T  S  L  R  M  G  R  C  C  R  Q  F  I  P  V  I  V  N  P  T  S  R  Q  T  A  R  C  V  P  I  N  G  F  W  S  I  S  A  S  R  R  *  V  A  S  H  L  V  T  M  T  S  W  F  L  L  K  Q  G  *  C  *  C  *  L  A  N  F  Q  I  L  I  V  I  V  N  S  R  C  D  K  T  Y  F  A  Y  S  F  S  S  F  F  *  R  F  K :   S  K  K  R  K  E  K  R  </first_frame>
            <second_frame>  T  D  K  W  A  E  T  E  L  G  T  K  W  G  D  K  W  E  E  K  F  F  A  G  I  G  S  R  Q  G  E  T  W  H  V  S  P  V  G  D   : R  W  S  R  T  W  G  E  E  H  F  G  N  G :   K  V  H  K  Y  G  K  S  T  T  G  E  S  W  D  I  V  V  D  E  G  T  Y  Y  E :   A  E  P  H  Y  G  W  A  D  V  V  G  N  S  S  Q  L  L  S  I  Q  P  R  D  R  P  P  G  V  F  P  S  M  D  F  G  P  S  L  P  P  E  D  E  L  P  P  T  L  S  Q  *  Q  V  G  F  F  S  N  K  V  D  V  D  A  S  W  Q  I  F  R  F  *  L  *  L  S  T  L  D  V  T  K  H  T  L  P  I  H  L  V  H  S  F  R  D  L   : N  Q  K  K  E  K  K  K  E </second_frame>
            <third_frame>   Q  I  S  G  R  K  L  S  L  E  Q  N  G  E  T  S  G  K  R  N  F  S  L  E  L  V  R  G  K  E  R  L  G  M  C  H  P  L  V  I  :  D  G  L  G  H  G  E  R  S  T  S  E  M   : A  K  C  T  S  T  A  R  A  R  Q  V  K  V  G  T  S  L  W  M  K  E  L  T  T   : R  L  N  L  T  T  D  G  Q  M  L  *  A  I  H  P  S  Y  C  Q  S  N  L  E  T  D  R  P  V  C  S  H  Q  W  I  L  V  H  L  C  L  Q  K  M  S  C  L  P  P  C  H  N  D  K  L  V  S  S  Q  T  R  L  M  L  M  L  V  G  K  F  S  D  F  D  C  N  C  Q  L  S  M  *  Q  N  I  L  C  L  F  I  *  F  I  L  L  E  I  *  :  I  K  K  K  K  R  K  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111502" stop="111382"/>
                    <exon start="111162" stop="111123"/>
                    <exon start="111015" stop="110941"/>
                    <exon start="110717" stop="110561"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TDKWAETELGTKWGDKWEEKFFAGIGSRQGETWHVSPVGDRWSRTWGEEHFGNGKVHKYGKSTTGESWDIVVDEGTYYEAEPHYGWADVVGNSSQLLSIQPRDRPPGVFPSMDFGPSLPPEDELPPTLSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="115609" PGL_stop="112577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115609" e_stop="115216"/>
            <exon e_start="113853" e_stop="113762"/>
            <exon e_start="113668" e_stop="113475"/>
            <exon e_start="112797" e_stop="112758"/>
            <exon e_start="112614" e_stop="112577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115609" e_stop="115216" e_length="394"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="115215" i_stop="113854" i_length="1362"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113853" e_stop="113762" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.986">
            <gDNA_intron_boundary i_start="113761" i_stop="113669" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113668" e_stop="113475" e_length="194"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.954">
            <gDNA_intron_boundary i_start="113474" i_stop="112798" i_length="677"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112797" e_stop="112758" e_length="40"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112757" i_stop="112615" i_length="143"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112614" e_stop="112577" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115609" stop="115216"/>
              <exon start="113853" stop="113762"/>
              <exon start="113668" stop="113475"/>
              <exon start="112797" stop="112758"/>
              <exon start="112614" stop="112577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115601" stop="115216"/>
              <exon start="113853" stop="113762"/>
              <exon start="113668" stop="113475"/>
              <exon start="112797" stop="112778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115601" stop="115317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCTCTGAATCTCCATCTGAACTTCACTCACTTCTAGGGCTTTATCAACACATTCTTCTACCTCCAATGGCATTCTTTTGAGCAATAATGGCGGCTTCGGCTTCTTCCAGAGGATTCACAGCGCCCATAGGGGCGGCTAAGCTGCCCACAGTTGAGGTGTTCCCTACATTACCTAATGGTTTTGTAGAATTTCGAAGGAAGAAGAGGAGTAGTACCGGAGGTTTCTTCAGTATACAATGTTGTTGTTCAGATTCTGTGATGCCAATTAGAGGTGGTAGTGGTTCTGGGAATGGCGTTGATAAAGGTGATGATGGGAGGTTCGATTCTAAGAAGATCACTGCTAATTATATGAGAACTCAAGCTTCTTCCCCAATGCCCTTTGCATCTCCTCA : GTCTAGATTTGTTTCAAAGCCAGAAAAATTCTTTTCCCGATGCACCCCAAGAAGTTCAGGCCCTAAGTCCCGTGATTCTCCACCAAAACGAG : ACACGGGCATTGCTAATGAGAAAGATTGGGGCATCAGTATGCTAAATGATAATGTCAATGAAACTGGAGTAAACGAGGACGGCAGTACATGGTATCGGGAGAGTGGGGAAGACCTTGGTGACAATGGATACCGATGCCGATGGACAAGGATGGGTGGTCAGAGCAGTGATGGTACCTTAGAATGGAAAGAAACG : TGGTGGGAGAAAAGTGATTGGACTGGATACAAAGAACTCG : GTGTTGAGAAATCCGGGAAAAATGTTGAAGGGGACGCA</gDNA_template>
            <first_frame> V  S  L  N  L  H  L  N  F  T  H  F  *  G  F  I  N  T  F  F  Y  L  Q  W  H  S  F  E  Q  *  W  R  L  R  L  L  P  E  D  S  Q  R  P  *  G  R  L  S  C  P  Q  L  R  C  S  L  H  Y  L  M  V  L  *  N  F  E  G  R  R  G  V  V  P  E  V  S  S  V  Y  N  V  V  V  Q  I  L  *  C  Q  L  E  V  V  V  V  L  G  M  A  L  I  K  V  M  M  G  G  S  I  L  R  R  S  L  L  I  I  *  E  L  K  L  L  P  Q  C  P  L  H  L  L   : S  L  D  L  F  Q  S  Q  K  N  S  F  P  D  A  P  Q  E  V  Q  A  L  S  P  V  I  L  H  Q  N  E  :  T  R  A  L  L  M  R  K  I  G  A  S  V  C  *  M  I  M  S  M  K  L  E  *  T  R  T  A  V  H  G  I  G  R  V  G  K  T  L  V  T  M  D  T  D  A  D  G  Q  G  W  V  V  R  A  V  M  V  P  *  N  G  K  K  R :   G  G  R  K  V  I  G  L  D  T  K  N  S  :  V  L  R  N  P  G  K  M  L  K  G  T   </first_frame>
            <second_frame>  F  L  *  I  S  I  *  T  S  L  T  S  R  A  L  S  T  H  S  S  T  S  N  G  I  L  L  S  N  N  G  G  F  G  F  F  Q  R  I  H  S  A  H  R  G  G  *  A  A  H  S  *  G  V  P  Y  I  T  *  W  F  C  R  I  S  K  E  E  E  E  *  Y  R  R  F  L  Q  Y  T  M  L  L  F  R  F  C  D  A  N  *  R  W  *  W  F  W  E  W  R  *  *  R  *  *  W  E  V  R  F  *  E  D  H  C  *  L  Y  E  N  S  S  F  F  P  N  A  L  C  I  S  S  :  V  *  I  C  F  K  A  R  K  I  L  F  P  M  H  P  K  K  F  R  P  *  V  P  *  F  S  T  K  T  R :   H  G  H  C  *  *  E  R  L  G  H  Q  Y  A  K  *  *  C  Q  *  N  W  S  K  R  G  R  Q  Y  M  V  S  G  E  W  G  R  P  W  *  Q  W  I  P  M  P  M  D  K  D  G  W  S  E  Q  *  W  Y  L  R  M  E  R  N   : V  V  G  E  K  *  L  D  W  I  Q  R  T  R :   C  *  E  I  R  E  K  C  *  R  G  R  </second_frame>
            <third_frame>   F  S  E  S  P  S  E  L  H  S  L  L  G  L  Y  Q  H  I  L  L  P  P  M  A  F  F  *  A  I  M  A  A  S  A  S  S  R  G  F  T  A  P  I  G  A  A  K  L  P  T  V  E  V  F  P  T  L  P  N  G  F  V  E  F  R  R  K  K  R  S  S  T  G  G  F  F  S  I  Q  C  C  C  S  D  S  V  M  P  I  R  G  G  S  G  S  G  N  G  V  D  K  G  D  D  G  R  F  D  S  K  K  I  T  A  N  Y  M  R  T  Q  A  S  S  P  M  P  F  A  S  P  Q :   S  R  F  V  S  K  P  E  K  F  F  S  R  C  T  P  R  S  S  G  P  K  S  R  D  S  P  P  K  R   : D  T  G  I  A  N  E  K  D  W  G  I  S  M  L  N  D  N  V  N  E  T  G  V  N  E  D  G  S  T  W  Y  R  E  S  G  E  D  L  G  D  N  G  Y  R  C  R  W  T  R  M  G  G  Q  S  S  D  G  T  L  E  W  K  E  T  :  W  W  E  K  S  D  W  T  G  Y  K  E  L   : G  V  E  K  S  G  K  N  V  E  G  D  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115526" stop="115216"/>
                    <exon start="113853" stop="113762"/>
                    <exon start="113668" stop="113475"/>
                    <exon start="112797" stop="112758"/>
                    <exon start="112614" stop="112577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIMAASASSRGFTAPIGAAKLPTVEVFPTLPNGFVEFRRKKRSSTGGFFSIQCCCSDSVMPIRGGSGSGNGVDKGDDGRFDSKKITANYMRTQASSPMPFASPQSRFVSKPEKFFSRCTPRSSGPKSRDSPPKRDTGIANEKDWGISMLNDNVNETGVNEDGSTWYRESGEDLGDNGYRCRWTRMGGQSSDGTLEWKETWWEKSDWTGYKELGVEKSGKNVEGDA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="124721" PGL_stop="118642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124721" e_stop="124586"/>
            <exon e_start="124498" e_stop="124415"/>
            <exon e_start="124351" e_stop="124219"/>
            <exon e_start="123666" e_stop="123555"/>
            <exon e_start="122624" e_stop="122525"/>
            <exon e_start="121791" e_stop="121664"/>
            <exon e_start="120931" e_stop="120862"/>
            <exon e_start="119873" e_stop="119785"/>
            <exon e_start="119571" e_stop="119526"/>
            <exon e_start="119230" e_stop="119157"/>
            <exon e_start="119025" e_stop="118955"/>
            <exon e_start="118881" e_stop="118642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.907" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.303" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.774" acc_prob="0.913" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.897" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="124721" e_stop="124586" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.907">
            <gDNA_intron_boundary i_start="124585" i_stop="124499" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="124498" e_stop="124415" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.946">
            <gDNA_intron_boundary i_start="124414" i_stop="124352" i_length="63"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124351" e_stop="124219" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124218" i_stop="123667" i_length="552"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123666" e_stop="123555" e_length="112"/>
          </exon>
          <intron i_serial="4" don_prob="0.303" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123554" i_stop="122625" i_length="930"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122624" e_stop="122525" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.908">
            <gDNA_intron_boundary i_start="122524" i_stop="121792" i_length="733"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="121791" e_stop="121664" e_length="128"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.988">
            <gDNA_intron_boundary i_start="121663" i_stop="120932" i_length="732"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="120931" e_stop="120862" e_length="70"/>
          </exon>
          <intron i_serial="7" don_prob="0.774" acc_prob="0.913">
            <gDNA_intron_boundary i_start="120861" i_stop="119874" i_length="988"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="119873" e_stop="119785" e_length="89"/>
          </exon>
          <intron i_serial="8" don_prob="0.966" acc_prob="0.990">
            <gDNA_intron_boundary i_start="119784" i_stop="119572" i_length="213"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="119571" e_stop="119526" e_length="46"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.973">
            <gDNA_intron_boundary i_start="119525" i_stop="119231" i_length="295"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="119230" e_stop="119157" e_length="74"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.897">
            <gDNA_intron_boundary i_start="119156" i_stop="119026" i_length="131"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="119025" e_stop="118955" e_length="71"/>
          </exon>
          <intron i_serial="11" don_prob="0.935" acc_prob="0.817">
            <gDNA_intron_boundary i_start="118954" i_stop="118882" i_length="73"/>
          </intron>
          <exon e_serial="12" e_score="0.996">
            <gDNA_exon_boundary e_start="118881" e_stop="118642" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124721" stop="124586"/>
              <exon start="124498" stop="124415"/>
              <exon start="124351" stop="124219"/>
              <exon start="123666" stop="123555"/>
              <exon start="122624" stop="122525"/>
              <exon start="121791" stop="121664"/>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124709" stop="124586"/>
              <exon start="124498" stop="124415"/>
              <exon start="124351" stop="124219"/>
              <exon start="123666" stop="123555"/>
              <exon start="122624" stop="122525"/>
              <exon start="121791" stop="121684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124707" stop="124586"/>
              <exon start="124498" stop="124415"/>
              <exon start="124351" stop="124219"/>
              <exon start="123666" stop="123555"/>
              <exon start="122624" stop="122573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124707" stop="124586"/>
              <exon start="124498" stop="124415"/>
              <exon start="124351" stop="124219"/>
              <exon start="123666" stop="123555"/>
              <exon start="122624" stop="122593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124656" stop="124586"/>
              <exon start="124498" stop="124415"/>
              <exon start="124351" stop="124232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123612" stop="123555"/>
              <exon start="122624" stop="122525"/>
              <exon start="121791" stop="121664"/>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119526"/>
              <exon start="119230" stop="119157"/>
              <exon start="119025" stop="118991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123611" stop="123555"/>
              <exon start="122624" stop="122525"/>
              <exon start="121791" stop="121664"/>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119526"/>
              <exon start="119230" stop="119201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122543" stop="122525"/>
              <exon start="121791" stop="121664"/>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119526"/>
              <exon start="119230" stop="119157"/>
              <exon start="119025" stop="118955"/>
              <exon start="118881" stop="118827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121715" stop="121664"/>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119526"/>
              <exon start="119230" stop="119157"/>
              <exon start="119025" stop="118974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120931" stop="120862"/>
              <exon start="119873" stop="119785"/>
              <exon start="119571" stop="119526"/>
              <exon start="119230" stop="119157"/>
              <exon start="119025" stop="118955"/>
              <exon start="118881" stop="118642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGGGAGTGTATTAGAGCTGCAGTTGAAAAGTTGCAAAATATCAACAACACTTTTAAGATCTGCAAAAAAGCTCTCTAAGCTGCGATTCAATGCAAGGAGGATCAAATGGAATCGGTTATGGCCTCAAATATCAG : GCACGATGTATCGCCGATGTGAAAGCTGATACGGATCACACCAGTTTCCTAACCGGAACTCTCAGCCTAAAAGAAGAAAATGAG : GTACATTTGATCCGGATTTCTTCCGCTGGCACTGAATTGCTATGCGAAGGTCTTTTTTCTCATCCTAATGAGATCTGGGACCTTGCGTCGTGCCCCTTCGATCAACGGATTTTCTCTACTGTTTTTTCTTCCG : GTGAAACATATGGGGCAGCAATATGGCAGATCCCTGAGTTGTATGGCCAATCGAATTCTCCACAACTAGAGAGGATTGCATCTCTTGATGCTCATAATTCGAAGATAAAGTG : CACACTTTGGTGGCCAACAGGAAGGCATGACAAGTTGGTTAGCATTGATGAACAGAATCTTTTCCTCTGGAGCTTTGATACTTCAAAGAAGAATGCACAG : GTACAATCACAAGAATCAGCAGGTGTGCTACATTCGTTAACTGGGGGCGCCTGGGATCCCCATGATTATAATGCTCTGGCACTGACAAGTGAATCATCAGTCCAACTTTGGGATCTACGGACAATGAA : GAAAACAAATTCAATCGATCATCCCCATGTCCGTAATTTGGATTACAATGTGAAGAGAGAGTATACTCTT : GTAACGGCTGAAGATGAATCTGGGATACATATATGGGATCTTAGAATGCTGAAGTTTCCAGTCCTTGATCTCCCTGGACATACTCACTG : GACATGGACTGTCAAGTGCAATCCCGAACATGAAGACTTAATTCTG : AGTGCTGGAACTGATTCTGCGGTCAATCTGTGGCTGGCTTCTCTTCCTAGTAGTGACGAACCAACTCCAGAGAG : CTTTGACTCCCCTAATAAGCCAGTGGATCCATTGCTTAATTCATATAGTGACTACGAAGACAGTGTGTATG : GACTTGCTTGGAGCTGTCGAGAGCCATGGATATTTGCATCATTGTCATATGATGGAAGGGTAAGGCCTCTTATGGGTTATTCATCAGAAGAACCAAGAAAAAAATACACATGTCTCTGGATAATAACCAGCAGATTTTGCAATCTTGAACTATTCTTGCTTTGGTTTGTATAAACAATAGGAAGTGTTGCTGCGAATGCTATTTTATTTTTTGGACAATTGTGAGAGAAAAATTTAAATA</gDNA_template>
            <first_frame> A  G  S  V  L  E  L  Q  L  K  S  C  K  I  S  T  T  L  L  R  S  A  K  K  L  S  K  L  R  F  N  A  R  R  I  K  W  N  R  L  W  P  Q  I  S   : G  T  M  Y  R  R  C  E  S  *  Y  G  S  H  Q  F  P  N  R  N  S  Q  P  K  R  R  K  *   : G  T  F  D  P  D  F  F  R  W  H  *  I  A  M  R  R  S  F  F  S  S  *  *  D  L  G  P  C  V  V  P  L  R  S  T  D  F  L  Y  C  F  F  F  R :   *  N  I  W  G  S  N  M  A  D  P  *  V  V  W  P  I  E  F  S  T  T  R  E  D  C  I  S  *  C  S  *  F  E  D  K  V  :  H  T  L  V  A  N  R  K  A  *  Q  V  G  *  H  *  *  T  E  S  F  P  L  E  L  *  Y  F  K  E  E  C  T   : G  T  I  T  R  I  S  R  C  A  T  F  V  N  W  G  R  L  G  S  P  *  L  *  C  S  G  T  D  K  *  I  I  S  P  T  L  G  S  T  D  N  E  :  E  N  K  F  N  R  S  S  P  C  P  *  F  G  L  Q  C  E  E  R  V  Y  S   : C  N  G  *  R  *  I  W  D  T  Y  M  G  S  *  N  A  E  V  S  S  P  *  S  P  W  T  Y  S  L  :  D  M  D  C  Q  V  Q  S  R  T  *  R  L  N  S   : E  C  W  N  *  F  C  G  Q  S  V  A  G  F  S  S  *  *  *  R  T  N  S  R  E  :  L  *  L  P  *  *  A  S  G  S  I  A  *  F  I  *  *  L  R  R  Q  C  V  W :   T  C  L  E  L  S  R  A  M  D  I  C  I  I  V  I  *  W  K  G  K  A  S  Y  G  L  F  I  R  R  T  K  K  K  I  H  M  S  L  D  N  N  Q  Q  I  L  Q  S  *  T  I  L  A  L  V  C  I  N  N  R  K  C  C  C  E  C  Y  F  I  F  W  T  I  V  R  E  K  F  K   </first_frame>
            <second_frame>  P  G  V  Y  *  S  C  S  *  K  V  A  K  Y  Q  Q  H  F  *  D  L  Q  K  S  S  L  S  C  D  S  M  Q  G  G  S  N  G  I  G  Y  G  L  K  Y  Q  :  A  R  C  I  A  D  V  K  A  D  T  D  H  T  S  F  L  T  G  T  L  S  L  K  E  E  N  E  :  V  H  L  I  R  I  S  S  A  G  T  E  L  L  C  E  G  L  F  S  H  P  N  E  I  W  D  L  A  S  C  P  F  D  Q  R  I  F  S  T  V  F  S  S   : G  E  T  Y  G  A  A  I  W  Q  I  P  E  L  Y  G  Q  S  N  S  P  Q  L  E  R  I  A  S  L  D  A  H  N  S  K  I  K  C :   T  L  W  W  P  T  G  R  H  D  K  L  V  S  I  D  E  Q  N  L  F  L  W  S  F  D  T  S  K  K  N  A  Q  :  V  Q  S  Q  E  S  A  G  V  L  H  S  L  T  G  G  A  W  D  P  H  D  Y  N  A  L  A  L  T  S  E  S  S  V  Q  L  W  D  L  R  T  M  K :   K  T  N  S  I  D  H  P  H  V  R  N  L  D  Y  N  V  K  R  E  Y  T  L  :  V  T  A  E  D  E  S  G  I  H  I  W  D  L  R  M  L  K  F  P  V  L  D  L  P  G  H  T  H  W :   T  W  T  V  K  C  N  P  E  H  E  D  L  I  L  :  S  A  G  T  D  S  A  V  N  L  W  L  A  S  L  P  S  S  D  E  P  T  P  E  S :   F  D  S  P  N  K  P  V  D  P  L  L  N  S  Y  S  D  Y  E  D  S  V  Y   : G  L  A  W  S  C  R  E  P  W  I  F  A  S  L  S  Y  D  G  R  V  R  P  L  M  G  Y  S  S  E  E  P  R  K  K  Y  T  C  L  W  I  I  T  S  R  F  C  N  L  E  L  F  L  L  W  F  V  *  T  I  G  S  V  A  A  N  A  I  L  F  F  G  Q  L  *  E  K  N  L  N  </second_frame>
            <third_frame>   R  E  C  I  R  A  A  V  E  K  L  Q  N  I  N  N  T  F  K  I  C  K  K  A  L  *  A  A  I  Q  C  K  E  D  Q  M  E  S  V  M  A  S  N  I  R :   H  D  V  S  P  M  *  K  L  I  R  I  T  P  V  S  *  P  E  L  S  A  *  K  K  K  M  R :   Y  I  *  S  G  F  L  P  L  A  L  N  C  Y  A  K  V  F  F  L  I  L  M  R  S  G  T  L  R  R  A  P  S  I  N  G  F  S  L  L  F  F  L  P  :  V  K  H  M  G  Q  Q  Y  G  R  S  L  S  C  M  A  N  R  I  L  H  N  *  R  G  L  H  L  L  M  L  I  I  R  R  *  S   : A  H  F  G  G  Q  Q  E  G  M  T  S  W  L  A  L  M  N  R  I  F  S  S  G  A  L  I  L  Q  R  R  M  H  R :   Y  N  H  K  N  Q  Q  V  C  Y  I  R  *  L  G  A  P  G  I  P  M  I  I  M  L  W  H  *  Q  V  N  H  Q  S  N  F  G  I  Y  G  Q  *   : R  K  Q  I  Q  S  I  I  P  M  S  V  I  W  I  T  M  *  R  E  S  I  L  L :   *  R  L  K  M  N  L  G  Y  I  Y  G  I  L  E  C  *  S  F  Q  S  L  I  S  L  D  I  L  T   : G  H  G  L  S  S  A  I  P  N  M  K  T  *  F  * :   V  L  E  L  I  L  R  S  I  C  G  W  L  L  F  L  V  V  T  N  Q  L  Q  R   : A  L  T  P  L  I  S  Q  W  I  H  C  L  I  H  I  V  T  T  K  T  V  C  M  :  D  L  L  G  A  V  E  S  H  G  Y  L  H  H  C  H  M  M  E  G  *  G  L  L  W  V  I  H  Q  K  N  Q  E  K  N  T  H  V  S  G  *  *  P  A  D  F  A  I  L  N  Y  S  C  F  G  L  Y  K  Q  *  E  V  L  L  R  M  L  F  Y  F  L  D  N  C  E  R  K  I  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124663" stop="124586"/>
                    <exon start="124498" stop="124415"/>
                    <exon start="124351" stop="124219"/>
                    <exon start="123666" stop="123555"/>
                    <exon start="122624" stop="122525"/>
                    <exon start="121791" stop="121664"/>
                    <exon start="120931" stop="120862"/>
                    <exon start="119873" stop="119785"/>
                    <exon start="119571" stop="119526"/>
                    <exon start="119230" stop="119157"/>
                    <exon start="119025" stop="118955"/>
                    <exon start="118881" stop="118709"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1155</number_coding_nucleotides>
                  <number_encoded_amino_acids>385</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQKSSLSCDSMQGGSNGIGYGLKYQARCIADVKADTDHTSFLTGTLSLKEENEVHLIRISSAGTELLCEGLFSHPNEIWDLASCPFDQRIFSTVFSSGETYGAAIWQIPELYGQSNSPQLERIASLDAHNSKIKCTLWWPTGRHDKLVSIDEQNLFLWSFDTSKKNAQVQSQESAGVLHSLTGGAWDPHDYNALALTSESSVQLWDLRTMKKTNSIDHPHVRNLDYNVKREYTLVTAEDESGIHIWDLRMLKFPVLDLPGHTHWTWTVKCNPEHEDLILSAGTDSAVNLWLASLPSSDEPTPESFDSPNKPVDPLLNSYSDYEDSVYGLAWSCREPWIFASLSYDGRVRPLMGYSSEEPRKKYTCLWIITSRFCNLELFLLWFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="120836" e_stop="120304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120836" e_stop="120304" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120836" stop="120304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204513" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAGTTGCATTGATGATTGATCCCTTGATTTGTCGTCCATTTGCAAATGAAATAATCTGTTTGAGTAAGTTTATGAATCTGTGAGGTATATCTGCTTTTTGCCTGTATGCATGCGTGTTAACATTACAATGTTAGGAGTTTGACACTCAAATGTGGACCCATCTTAGGAACCTTTTTGATATTTTGTACTAGCATTTCAATTTCAATATGGAATGTGGAGAGGTACTCGTTTGCTACAAGAAGGAAAGGATAATTCTTTTTTTTCTTTAAAGCATAATGTCTTCAACTTTCTACTTTTTGTTTCCTCCTAGCAATCACTTTATGGAGATAGATTACATGACATGAATGTCATGACATGGAAAGTACTTCCTCTAAAGTGTATGGCTGTGGCCTTGAGTTTTTAGTGGCTCTATTTCTCTATCAGGCTTCTGGTTTTTGCTCAACGATTTGTTGTTTATTTCTGAAAAAGTTCCCATACTTGTGTTTTTAATATGTCCATCTACCTAAATAGAAGTATGTTACCCTTAACATG</gDNA_template>
            <first_frame> L  S  C  I  D  D  *  S  L  D  L  S  S  I  C  K  *  N  N  L  F  E  *  V  Y  E  S  V  R  Y  I  C  F  L  P  V  C  M  R  V  N  I  T  M  L  G  V  *  H  S  N  V  D  P  S  *  E  P  F  *  Y  F  V  L  A  F  Q  F  Q  Y  G  M  W  R  G  T  R  L  L  Q  E  G  K  D  N  S  F  F  S  L  K  H  N  V  F  N  F  L  L  F  V  S  S  *  Q  S  L  Y  G  D  R  L  H  D  M  N  V  M  T  W  K  V  L  P  L  K  C  M  A  V  A  L  S  F  *  W  L  Y  F  S  I  R  L  L  V  F  A  Q  R  F  V  V  Y  F  *  K  S  S  H  T  C  V  F  N  M  S  I  Y  L  N  R  S  M  L  P  L  T   </first_frame>
            <second_frame>  *  V  A  L  M  I  D  P  L  I  C  R  P  F  A  N  E  I  I  C  L  S  K  F  M  N  L  *  G  I  S  A  F  C  L  Y  A  C  V  L  T  L  Q  C  *  E  F  D  T  Q  M  W  T  H  L  R  N  L  F  D  I  L  Y  *  H  F  N  F  N  M  E  C  G  E  V  L  V  C  Y  K  K  E  R  I  I  L  F  F  L  *  S  I  M  S  S  T  F  Y  F  L  F  P  P  S  N  H  F  M  E  I  D  Y  M  T  *  M  S  *  H  G  K  Y  F  L  *  S  V  W  L  W  P  *  V  F  S  G  S  I  S  L  S  G  F  W  F  L  L  N  D  L  L  F  I  S  E  K  V  P  I  L  V  F  L  I  C  P  S  T  *  I  E  V  C  Y  P  *  H  </second_frame>
            <third_frame>   K  L  H  *  *  L  I  P  *  F  V  V  H  L  Q  M  K  *  S  V  *  V  S  L  *  I  C  E  V  Y  L  L  F  A  C  M  H  A  C  *  H  Y  N  V  R  S  L  T  L  K  C  G  P  I  L  G  T  F  L  I  F  C  T  S  I  S  I  S  I  W  N  V  E  R  Y  S  F  A  T  R  R  K  G  *  F  F  F  F  F  K  A  *  C  L  Q  L  S  T  F  C  F  L  L  A  I  T  L  W  R  *  I  T  *  H  E  C  H  D  M  E  S  T  S  S  K  V  Y  G  C  G  L  E  F  L  V  A  L  F  L  Y  Q  A  S  G  F  C  S  T  I  C  C  L  F  L  K  K  F  P  Y  L  C  F  *  Y  V  H  L  P  K  *  K  Y  V  T  L  N  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="125710" PGL_stop="129570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125710" e_stop="125986"/>
            <exon e_start="126126" e_stop="126215"/>
            <exon e_start="126457" e_stop="126537"/>
            <exon e_start="126662" e_stop="126793"/>
            <exon e_start="127926" e_stop="128144"/>
            <exon e_start="128456" e_stop="128548"/>
            <exon e_start="129068" e_stop="129570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.737" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="125710" e_stop="125986" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.737">
            <gDNA_intron_boundary i_start="125987" i_stop="126125" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126126" e_stop="126215" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.980">
            <gDNA_intron_boundary i_start="126216" i_stop="126456" i_length="241"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="126457" e_stop="126537" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.931">
            <gDNA_intron_boundary i_start="126538" i_stop="126661" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="126662" e_stop="126793" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="126794" i_stop="127925" i_length="1132"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="127926" e_stop="128144" e_length="219"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.991">
            <gDNA_intron_boundary i_start="128145" i_stop="128455" i_length="311"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="128456" e_stop="128548" e_length="93"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.990">
            <gDNA_intron_boundary i_start="128549" i_stop="129067" i_length="519"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="129068" e_stop="129570" e_length="503"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125710" stop="125986"/>
              <exon start="126126" stop="126214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125716" stop="125986"/>
              <exon start="126126" stop="126215"/>
              <exon start="126457" stop="126537"/>
              <exon start="126662" stop="126793"/>
              <exon start="127926" stop="128001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125717" stop="125986"/>
              <exon start="126126" stop="126215"/>
              <exon start="126457" stop="126537"/>
              <exon start="126662" stop="126793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125763" stop="125986"/>
              <exon start="126126" stop="126215"/>
              <exon start="126457" stop="126537"/>
              <exon start="126662" stop="126793"/>
              <exon start="127926" stop="127979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125803" stop="125986"/>
              <exon start="126126" stop="126215"/>
              <exon start="126457" stop="126516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126134" stop="126215"/>
              <exon start="126457" stop="126537"/>
              <exon start="126662" stop="126793"/>
              <exon start="127926" stop="128144"/>
              <exon start="128456" stop="128504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126512" stop="126537"/>
              <exon start="126662" stop="126793"/>
              <exon start="127926" stop="128144"/>
              <exon start="128456" stop="128548"/>
              <exon start="129068" stop="129173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128528" stop="128548"/>
              <exon start="129068" stop="129570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306603" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATAATAGGGTTTTAGCGAGGAAGAGAAACAAAATTCACGTAAAACAATCCAAAAGAAACACAATTGATAATGTCCTCGCTGACGTTGAAACCAACGTTTCTGTTACAGGCATATGGTTCTTCGTCTTCGTCGTCTGCCGGAAGTCGACGGCTTTGTTCTCTGATTAGCTTCCAGAAGAAAACATTTCGCAAACAAAAATTCACTCTGAGAGCTCAATCCCTCGATTCACCGCAAAATAACAACGAAAACGATACCAAACCTCCAAATGGCTCTATG : CACAAAAGCAGAAGGGAAATTCTACTGGAGTATGTGCAAAATGTACAACCGGAATTCATGGAGTTGTTTGTGAAAAAAGCACCACAACAG : GTAGTTGAGGCAATGCGCCAAACAGTGACAAACATGATTGGAACATTACCTCCACAATTTTTCGCCATTACTGTAACCACG : GTCGCTGAAAATCTTGCTCAGCTTATGTATAGTGTCTTGATGACTGGATATATGTTTAGGAATGCTCAATTTCGGTTAGAACTGCAACAAAGTCTGGAACAGGCTGCCCTTCCTGAAGCACAGGAAGAAAAG : GATTCACCAGATTATGCATCTGGTACCCAGAAAAAGGTGACTGGAGAAGTCATAAGGTGGAATAATGTTACAGGTCCTGAAAAAATAGACGCGTTGAAGTATATCGAGTTACTTGAAGCAGAAGTGGAGGAATTGAATCGTCAAATGGAAAGGAAATCTGGTAATGGTTATAATGAGCTGTTGGAATATCTAAAGACTCTTGAGCCTCAAAATATCAAG : GAGCTAACCAGTACAGCTGGAGAAGATGTTGTGCTCGCCATGAATTCTTTCATTAAGCGTCTCTTAGCTGTTTCAGATCCTAGTCAAATGAAG : ACTAGTGTAACAGAGACAAGTGCCCCAGAACTTGCCAAACTTCTTTATTGGCTCATGGTGGTTGGTTATAGCATCCGGAATATTGAAGTCCGCTTTGATATGGAACGGGTACTAGGCACTTCTCCAAAGCTCGCTGAGCTGCCTCCTGGTGAAAATATTTAGGCATCTCTGGAAAGTGTCTAATCTATAGCAAGCATTAAAACGTTGAAGCAACATACATTTTTCATGAGCTTTACGATGGTCAATAGTAAAATTTTATCAAGCTTGTACGACTATCTGGGAGGACAACAGTGGAAATTGGTTTTAGTGCATTTTCTTCACTCACTCCCAGCCCCGCTCCCCCTATTATTCTCAGTTTGGGAGCATCATTAAGACGCTCATACAAAGGAAATGTACTATAAATTGATGCACAATGTAACTTATGTGAGTTAATTTGATTCATTGCCCTCTAAAATGTACCTCTCTGTTTATGGGAATGAGAAATTTTGTGGCTTAGATCTCCA</gDNA_template>
            <first_frame> D  N  R  V  L  A  R  K  R  N  K  I  H  V  K  Q  S  K  R  N  T  I  D  N  V  L  A  D  V  E  T  N  V  S  V  T  G  I  W  F  F  V  F  V  V  C  R  K  S  T  A  L  F  S  D  *  L  P  E  E  N  I  S  Q  T  K  I  H  S  E  S  S  I  P  R  F  T  A  K  *  Q  R  K  R  Y  Q  T  S  K  W  L  Y   : A  Q  K  Q  K  G  N  S  T  G  V  C  A  K  C  T  T  G  I  H  G  V  V  C  E  K  S  T  T  T   : G  S  *  G  N  A  P  N  S  D  K  H  D  W  N  I  T  S  T  I  F  R  H  Y  C  N  H   : G  R  *  K  S  C  S  A  Y  V  *  C  L  D  D  W  I  Y  V  *  E  C  S  I  S  V  R  T  A  T  K  S  G  T  G  C  P  S  *  S  T  G  R  K   : G  F  T  R  L  C  I  W  Y  P  E  K  G  D  W  R  S  H  K  V  E  *  C  Y  R  S  *  K  N  R  R  V  E  V  Y  R  V  T  *  S  R  S  G  G  I  E  S  S  N  G  K  E  I  W  *  W  L  *  *  A  V  G  I  S  K  D  S  *  A  S  K  Y  Q   : G  A  N  Q  Y  S  W  R  R  C  C  A  R  H  E  F  F  H  *  A  S  L  S  C  F  R  S  *  S  N  E   : D  *  C  N  R  D  K  C  P  R  T  C  Q  T  S  L  L  A  H  G  G  W  L  *  H  P  E  Y  *  S  P  L  *  Y  G  T  G  T  R  H  F  S  K  A  R  *  A  A  S  W  *  K  Y  L  G  I  S  G  K  C  L  I  Y  S  K  H  *  N  V  E  A  T  Y  I  F  H  E  L  Y  D  G  Q  *  *  N  F  I  K  L  V  R  L  S  G  R  T  T  V  E  I  G  F  S  A  F  S  S  L  T  P  S  P  A  P  P  I  I  L  S  L  G  A  S  L  R  R  S  Y  K  G  N  V  L  *  I  D  A  Q  C  N  L  C  E  L  I  *  F  I  A  L  *  N  V  P  L  C  L  W  E  *  E  I  L  W  L  R  S  P </first_frame>
            <second_frame>  I  I  G  F  *  R  G  R  E  T  K  F  T  *  N  N  P  K  E  T  Q  L  I  M  S  S  L  T  L  K  P  T  F  L  L  Q  A  Y  G  S  S  S  S  S  S  A  G  S  R  R  L  C  S  L  I  S  F  Q  K  K  T  F  R  K  Q  K  F  T  L  R  A  Q  S  L  D  S  P  Q  N  N  N  E  N  D  T  K  P  P  N  G  S  M  :  H  K  S  R  R  E  I  L  L  E  Y  V  Q  N  V  Q  P  E  F  M  E  L  F  V  K  K  A  P  Q  Q  :  V  V  E  A  M  R  Q  T  V  T  N  M  I  G  T  L  P  P  Q  F  F  A  I  T  V  T  T  :  V  A  E  N  L  A  Q  L  M  Y  S  V  L  M  T  G  Y  M  F  R  N  A  Q  F  R  L  E  L  Q  Q  S  L  E  Q  A  A  L  P  E  A  Q  E  E  K  :  D  S  P  D  Y  A  S  G  T  Q  K  K  V  T  G  E  V  I  R  W  N  N  V  T  G  P  E  K  I  D  A  L  K  Y  I  E  L  L  E  A  E  V  E  E  L  N  R  Q  M  E  R  K  S  G  N  G  Y  N  E  L  L  E  Y  L  K  T  L  E  P  Q  N  I  K  :  E  L  T  S  T  A  G  E  D  V  V  L  A  M  N  S  F  I  K  R  L  L  A  V  S  D  P  S  Q  M  K  :  T  S  V  T  E  T  S  A  P  E  L  A  K  L  L  Y  W  L  M  V  V  G  Y  S  I  R  N  I  E  V  R  F  D  M  E  R  V  L  G  T  S  P  K  L  A  E  L  P  P  G  E  N  I  *  A  S  L  E  S  V  *  S  I  A  S  I  K  T  L  K  Q  H  T  F  F  M  S  F  T  M  V  N  S  K  I  L  S  S  L  Y  D  Y  L  G  G  Q  Q  W  K  L  V  L  V  H  F  L  H  S  L  P  A  P  L  P  L  L  F  S  V  W  E  H  H  *  D  A  H  T  K  E  M  Y  Y  K  L  M  H  N  V  T  Y  V  S  *  F  D  S  L  P  S  K  M  Y  L  S  V  Y  G  N  E  K  F  C  G  L  D  L   </second_frame>
            <third_frame>   *  *  G  F  S  E  E  E  K  Q  N  S  R  K  T  I  Q  K  K  H  N  *  *  C  P  R  *  R  *  N  Q  R  F  C  Y  R  H  M  V  L  R  L  R  R  L  P  E  V  D  G  F  V  L  *  L  A  S  R  R  K  H  F  A  N  K  N  S  L  *  E  L  N  P  S  I  H  R  K  I  T  T  K  T  I  P  N  L  Q  M  A  L  C :   T  K  A  E  G  K  F  Y  W  S  M  C  K  M  Y  N  R  N  S  W  S  C  L  *  K  K  H  H  N  R :   *  L  R  Q  C  A  K  Q  *  Q  T  *  L  E  H  Y  L  H  N  F  S  P  L  L  *  P  R :   S  L  K  I  L  L  S  L  C  I  V  S  *  *  L  D  I  C  L  G  M  L  N  F  G  *  N  C  N  K  V  W  N  R  L  P  F  L  K  H  R  K  K  R :   I  H  Q  I  M  H  L  V  P  R  K  R  *  L  E  K  S  *  G  G  I  M  L  Q  V  L  K  K  *  T  R  *  S  I  S  S  Y  L  K  Q  K  W  R  N  *  I  V  K  W  K  G  N  L  V  M  V  I  M  S  C  W  N  I  *  R  L  L  S  L  K  I  S  R :   S  *  P  V  Q  L  E  K  M  L  C  S  P  *  I  L  S  L  S  V  S  *  L  F  Q  I  L  V  K  *  R :   L  V  *  Q  R  Q  V  P  Q  N  L  P  N  F  F  I  G  S  W  W  L  V  I  A  S  G  I  L  K  S  A  L  I  W  N  G  Y  *  A  L  L  Q  S  S  L  S  C  L  L  V  K  I  F  R  H  L  W  K  V  S  N  L  *  Q  A  L  K  R  *  S  N  I  H  F  S  *  A  L  R  W  S  I  V  K  F  Y  Q  A  C  T  T  I  W  E  D  N  S  G  N  W  F  *  C  I  F  F  T  H  S  Q  P  R  S  P  Y  Y  S  Q  F  G  S  I  I  K  T  L  I  Q  R  K  C  T  I  N  *  C  T  M  *  L  M  *  V  N  L  I  H  C  P  L  K  C  T  S  L  F  M  G  M  R  N  F  V  A  *  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0096K04.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="125753" stop="125986"/>
                    <exon start="126126" stop="126215"/>
                    <exon start="126457" stop="126537"/>
                    <exon start="126662" stop="126793"/>
                    <exon start="127926" stop="128144"/>
                    <exon start="128456" stop="128548"/>
                    <exon start="129068" stop="129229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNPKETQLIMSSLTLKPTFLLQAYGSSSSSSAGSRRLCSLISFQKKTFRKQKFTLRAQSLDSPQNNNENDTKPPNGSMHKSRREILLEYVQNVQPEFMELFVKKAPQQVVEAMRQTVTNMIGTLPPQFFAITVTTVAENLAQLMYSVLMTGYMFRNAQFRLELQQSLEQAALPEAQEEKDSPDYASGTQKKVTGEVIRWNNVTGPEKIDALKYIELLEAEVEELNRQMERKSGNGYNELLEYLKTLEPQNIKELTSTAGEDVVLAMNSFIKRLLAVSDPSQMKTSVTETSAPELAKLLYWLMVVGYSIRNIEVRFDMERVLGTSPKLAELPPGENI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="130072" PGL_stop="129826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130072" e_stop="129921"/>
            <exon e_start="129844" e_stop="129826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.470" e_score="0.947"/>
          <exon-only e_score="0.474"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="130072" e_stop="129921" e_length="152"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.470">
            <gDNA_intron_boundary i_start="129920" i_stop="129845" i_length="76"/>
          </intron>
          <exon e_serial="2" e_score="0.474">
            <gDNA_exon_boundary e_start="129844" e_stop="129826" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130072" stop="129921"/>
              <exon start="129844" stop="129826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTTTCAGCAGAAAAAATGTTGAGAAAATTCTGATTGCAAAATAATCTAGTGTTAGTAGGATCTGACTGATCCATTCATTTTGTTGTACCAACAGGTAGTGTACATTATTGTTCAACAGCCAATAATTACCTCTTGCCAAAAATTGACTA : TTACTCAAAGAGGATATAA</gDNA_template>
            <first_frame> K  V  S  A  E  K  M  L  R  K  F  *  L  Q  N  N  L  V  L  V  G  S  D  *  S  I  H  F  V  V  P  T  G  S  V  H  Y  C  S  T  A  N  N  Y  L  L  P  K  I  D  Y :   Y  S  K  R  I  * </first_frame>
            <second_frame>  R  F  Q  Q  K  K  C  *  E  N  S  D  C  K  I  I  *  C  *  *  D  L  T  D  P  F  I  L  L  Y  Q  Q  V  V  Y  I  I  V  Q  Q  P  I  I  T  S  C  Q  K  L  T   : I  T  Q  R  G  Y   </second_frame>
            <third_frame>   G  F  S  R  K  N  V  E  K  I  L  I  A  K  *  S  S  V  S  R  I  *  L  I  H  S  F  C  C  T  N  R  *  C  T  L  L  F  N  S  Q  *  L  P  L  A  K  N  *  L  :  L  L  K  E  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0096K04.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 354 chains have been computed
$ 
$ memory statistics:
$ 937936 bytes spliced alignments in total
$ 314 spliced alignments have been stored
$ 2987 bytes was the average size of a spliced alignment
$ 40448 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1758 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 377 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:49:54
-->
