<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:44:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688021" ref_strand="+" ref_description="SGN-E688021 [T3_tus_85_D20]">
      <seq>tggtaacaaaaataacagaagccgccatgattgccaagcttgggattgatgtctacataactaaggcaggaacagaccattcagtgaaagcccttagtggattcttgaagggtggcatacctgatgactggctcggaacagccatccgttacatgagctgagctagatcataggttgctcgtgctgaatacgagggtttaaatcatttgaaaaagacacattccactaacagcaagttttcgttttatgacgtgcagtcccctcccttgtggtctctctattcatcctttttcctgttcatttctcagattttctgaactgtactattaatttgttgattaatagtagttgttttgatttaaggaagcgaaattttgacttgattaattgtgttgtaatgtcatattgatcgaattgacacttctattaatgcatctcatgtgttgcctgatggaaaccatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="1290" stop="143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="990" g_stop="926" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="925" i_stop="843" i_length="83">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="842" g_stop="444" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="464" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="476"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E688021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="990" e_stop="926"/>
          <exon e_start="842" e_stop="444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAGGTAATATGTTTTCATGGGAGCTTAGGATGAGAAACAAATATAACTCATCCCAACTAGTTCATTATTTGTTTGAATTGATGCAGGCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</genome_strand>
        <mrna_strand>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAG...................................................................................GCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689340" ref_strand="+" ref_description="SGN-E689340 [t3_tus_84_D20]">
      <seq>tggtaacaaaaataacagaagccgccatgattgccaagcttgggattgatgtctacataactaaggcaggaacagaccattcagtgaaagcccttagtggattcttgaagggtggcatacctgatgactggctcggaacagccatccgttacatgagctgagctagatcataggttgctcgtgctgaatacgagggtttaaatcatttgaaaaagacacattccactaacagcaagttttcgttttatgacgtgcagtcccctcccttgtggtctctctattcatcctttttcctgttcatttctcagattttctgaactgtactattaatttgttgattaatagtagttgttttgatttaaggaagcgaaattttgacttgattaattgtgttgtaatgtcatattgatcgaattgacacttctattaatgcatctcatgtgttgcctgatggaaaccatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="1290" stop="143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="990" g_stop="926" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="925" i_stop="843" i_length="83">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="842" g_stop="444" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="464" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="476"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E689340" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="990" e_stop="926"/>
          <exon e_start="842" e_stop="444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAGGTAATATGTTTTCATGGGAGCTTAGGATGAGAAACAAATATAACTCATCCCAACTAGTTCATTATTTGTTTGAATTGATGCAGGCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</genome_strand>
        <mrna_strand>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAG...................................................................................GCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335094" ref_strand="+" ref_description="SGN-E335094 [cTOE-1-G15]">
      <seq>ggtaacaaaaataacagaagccgccatgattgccaagcttgggattgatgtctacataactaaggcaggaacagaccattcagtgaaagcccttagtggattcttgaagggtggcatacctgatgactggctcggaacagccatccgttacatgagctgagctagatcataggttgctcgtgctgaatacgagggtttaaatcatttgaaaaagacacattccactaacagcaagttttcgttttatgacgtgcagtcccctcccttgtggtctctctattcatcctttttcctgttcatttctcagattttctgaactgtactattaatttgttgattaatagtagttgttttgatttaaggaagcgaaattttgacttgattaattgtgttgtaatgtcatattgatcgaattgacacttctattaatgcatctcatgtgttgcctgatggaaaccatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="1289" stop="143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="989" g_stop="926" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="925" i_stop="843" i_length="83">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="842" g_stop="444" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="463" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="475"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E335094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="989" e_stop="926"/>
          <exon e_start="842" e_stop="444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAGGTAATATGTTTTCATGGGAGCTTAGGATGAGAAACAAATATAACTCATCCCAACTAGTTCATTATTTGTTTGAATTGATGCAGGCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</genome_strand>
        <mrna_strand>GGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAG...................................................................................GCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484861" ref_strand="+" ref_description="SGN-E484861 [cSTE-15-H19]">
      <seq>tttcagctaccttttagagtgaattgaacaaagcagcagagcattcaccaaaaatggagcacaagaaaacagctaagcgtctccgttgtatcgtcaaactcggaggtgcagccatcacgtgtaaaaataaattggagactatagatgacgagaatcttaaggaagtgggatcccagattcgtcaagcatttgttccggattctacttctgcaaatgttcttggaatggattggagtaaaaggctgggacagtctgaagctccaagtttcgttaatgatttcggtgatcaaccatttgtggattcagaaagttttattgttgttcatggagcaggttcctttggacactttcaagctagcaagtcaggggttcataagggtggactaagccgacctcttgtcaaggccggttttgttgccacaagaatttcagtcacatccctcaatcttgaaatcgtgagagccctagcaagagagggtattccttccatcggaatgtctccattctcatgtggttggtcaacatgtcaaagaaatatgacggaggctgacatttccatggtcattaaagctattgatgctggttttatacctgtcctgcatggagatgcagttctggatacattacaggagtgcactattctgagcggagacgtgantatacgccatttagcagctgaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="6070" stop="1495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5770" g_stop="5669" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5668" i_stop="4828" i_length="841">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4827" g_stop="4597" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="333" r_length="231" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4596" i_stop="4424" i_length="173">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4423" g_stop="4326" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="431" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4325" i_stop="3919" i_length="407">
            <donor d_prob="0.401" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3918" g_stop="3876" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="474" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3875" i_stop="3299" i_length="577">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3298" g_stop="3237" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="536" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3236" i_stop="3119" i_length="118">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3118" g_stop="3062" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="593" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3061" i_stop="1959" i_length="1103">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="1958" g_stop="1923" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="629" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="1922" i_stop="1849" i_length="74">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="1848" g_stop="1795" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="683" r_length="54" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E484861" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5770" e_stop="5669"/>
          <exon e_start="4827" e_stop="4597"/>
          <exon e_start="4423" e_stop="4326"/>
          <exon e_start="3918" e_stop="3876"/>
          <exon e_start="3298" e_stop="3237"/>
          <exon e_start="3118" e_stop="3062"/>
          <exon e_start="1958" e_stop="1923"/>
          <exon e_start="1848" e_stop="1795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCCAACTTTTAGAGTGAATTGACCAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAACTAAGCGTCTCCGTTGTATCGTTAAACTCGGTGAACTATCCTTTTCCACTTTATTTGTCTACATTTGATTTGATTTGATTTGATATCTGTGTATTTGATTGACTCAAATAATCCTCAAATTGAGCATCTGTTTGGTACTTTATGAATAGAAAATGTTGTGCTACGATTCAATTGGCACTAATTTTGTGAATTGAACAGGGTTATAGTCAAACTAGATGAATCCATTGACTTGAACAGAGGATATGTGTAGATGAGCTCAACTAGTTTAGGATCGATGCGTAGTTGATTGATTGATTGATTTTACATACAATAACAACATGTCTAGTGTAGTCTTAGCGGGGTCTGAGGAGGGTAGAGTATGCGCAGACCTTACTTTAACTGAGATAAGATAGACGGTTTCTGATAGAACCTTGGCTAATGGAAGTACAAATGATACTAGAAAATAACAAAAACAATAGATTGTAGCGGAAATGCTAATTGATTGATTTTACCTACAACAACAATATATCGAGAGGGGTAGAGTATGTGCAGACCTTACTTCTACCTCATTGAGGTAGAGAGGTTGTTTCTAATAGACCATCGGCTCAAAGACATAATCAGTTTAGAAAAAGACGTAATGGAAGTACAAGGGACAATAGAAAATACTTAAACAAAAACAAAATATAGTAGCATAACATGTTAGTTGATTAATTGATTGACTTTACCTATAGGAGAAACTAGAAATAAAAACAATGTTGGTTAATGCTTTCTTTTGAGTTTGTATTTAACTATTTTAGGTTACTCTTAACACTGTATAAAGTGCATGTCTCTTCTTCTTTTTTATTTTACTTTGGAGATTTTGGATGCATTATTTGTTTACTTTTTAGTTCAGGAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCGTCCCAGATTCGTCAAGCATTTGTTCCGGACTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCAGTGATCAACCAGTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAGGTTGATACTATTTGAGTGTGTTTAGTCAGTAGCAGGATTTGTTAGGTTCAGTAGCCACAGCAAATTTCTTTGAATTATGAAATGAATAAACATAAGTCGACCCAATTTTGGTGCTATAGAAGGACAATTTGGATTTTAGTTTTGAGTAAAACATTTGTCATCATTGACTTCAGGTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGGCCTCTTGTCAAGGCAGGTTTTGTTGCCACAAGAATTTCAGTAAGCGCCAGACCTCACCTTTCCGTTTTCCACTTGTAACTTAGGACTAGCAGTGCTGTTGCTGAAACCAGTTAAATAGTTACCTCCACCCGTTTCTTTTTCATTCCTACGTTTCATGGCCTTATCATTTCGGGCTCAAATATTACATGAAATAATTCATGCATGCATCTTTGTTCTCCTCTTGTTTTGGACACATCTCCAGGATATTATGCAGGCTAAAATTCCATGCTCCTGAGAGATGTGTATTAGACTGTTCAGGGAATGACGGGTTTGGTGTTTACTGCACAAAATTAAGTGTTATGACCTAATTATTTGCTAGACTTCTTCGTCTATGCGATGATCCCCCTCTATGTTTCCTTCGACTCTCAGGTGCTATGTGACGGAATTTACATTTTTCTTTATTGCAGGTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAGGTACTTATAACAATTTCATTTCCATGCAACGAGCCTTTTAAGGCTGTCTATAAATATATCTTATTATGATTAAATATACCTGGTACCATAATACACAACATTTTCACATCTTCGTTCCATTGGGTCTCACTGTGGGCAGGGTTGGGAATTGATATGGATTTGGATTTTAAGTCCTGAGCATCTCTCTAATAGCCCAACTGCTTTATTGCATGACAAGAAATAGGATTTGAATAGACATTGTGAAGGCCATAGACAATTATTATATCAGATTGGAGGGGCTATATTGCTCTGCGGAAGATGTTACGAGGGCCTAAATCGTTTTGGTATCCTCTTTTAAGTTCCCACGTCACTCTTTAAGAAGCTAACATCCTCATTAATCAACACAAATTGTTGATATCCATAGTACTTGATGGCTGTCCATCCAGTCATTCTGCAAACAATTGACAGCTCTTCACGTACAAGGCTTGTTAATGATTCATTATAGACGCATATTTTCACCTTAAGGGGCGTACTTGCGTACAAATCTATGTCTCTCTCTTATCAGTGGATTCCTAAGAAATGGTTTTTGTTGTTGCAGAGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAATGTTAGAAGCCGAAATGAAGATCATTTTCATTAAATGGATATATTTCTATATTTTAAGCTCTTTCGAGAGAAAACAAAATTGTTCCTTGCTTGAAATTTGGCAACTTGTGCTTCTGCAGATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCTGTAAGTTTGAACTCTTCGGATCTTAGCCCAAAACTCTCGTACTTTTTCACACATATAAATATCTCTGTGGCAACACAATTATATATCAGTTTAGTTTTTCATTGACACTCTCTTTCAGACCATATTCTTACCTTTCCCCTGATATCTTCCTCCATTTTCTGAGGCAAGAATATAATCAATAATGTGCATTATGTAGGTAGGTTTGTCATGATGTTTAGGCTTTTCATGTCAAGGAGGTGCTAACTGTTAGCACTATAGGATGTGTATTTATAAGCTTAATGTTCAAATATTTAGAGGAATATTATAGTAGTGCAAATTCCCATGATTATATGCTTTTTGACATAGACACCAAAGGGTCAAAAATCCAATAGAAGAACTTGGCGAACAGGAAAAAGTTCTGCTACTCAAAGCACTTTCTAGTTTATTATTTTCAAAGATACTTTGGGAGAGTGTTGTTGGTAAACATGTTAATAACTATATGTGTGTAAGTTTAACTTGGCTTTAAACCAAAGACCACACTTAACAATCAGATACTTTTGTAAGCAAGGCATAACCTGAGTAGGTCTTAGCTATGTTCCTTGGACTGCCCAAAAATGTTGCCATACTCCTGTCAGATCTTCCAAACTGCACTACTTTTGGAGCATTGCGCGATATTTTTGAAGAGTCCGAGCAACATAGGGTCTTAATTCGTACAATTGCAAACTAGGGATTATTATATGAAAGGAACTGCTAGTTAAGTTTATCTATGCAATCTGAGATTTTTTCACTTGAATTAATGTCATGTTCATTATAAACAATGTTAATCTGTATGAAATAATTAAGCTTTGTTTGCAAATAAGAAAAGATGATCTTCTGCTAATGTAGCTTTAGCTTAGTTTTCCACTCTTCCTTGATCGAACACTTCTGAATCTTTTTCTTCATTGCAACGAAACACTTCTGGTAAATTGTTCTTTCATAAAGCTTTTCTTCACTATATTTTCATATATCAAGTCCTTGAAATAAAATATCGCTTTCTAATTCGGTCAATTTGTTATTGCAATTGCTTGGATTTTATAGTTTTGTGACATAGAGAATGTTGTAACACAAGTTCGTTTGCATTCCAGGTCCTGCATGGAGATGCAGTTCTGGATACATTACAGGTGTGTTTTTCAAGTATAATTGAACATTAACATGGTGATCACTGTTCATGTAATTAATCCTTTCACTTGTTCAGGAGTGCACTATTCTGAGTGGAGACGTGATAATACGTCATTTAGCAGCTGAACTA</genome_strand>
        <mrna_strand>TTTCAGCTACCTTTTAGAGTGAATTGAACAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAGCTAAGCGTCTCCGTTGTATCGTCAAACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGACGAGAATCTTAAGGAAGTGGGATCCCAGATTCGTCAAGCATTTGTTCCGGATTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCGGTGATCAACCATTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAG.............................................................................................................................................................................GTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGACCTCTTGTCAAGGCCGGTTTTGTTGCCACAAGAATTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAAT......................................................................................................................ATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGCATGGAGATGCAGTTCTGGATACATTACAG..........................................................................GAGTGCACTATTCTGAGCGGAGACGTGANTATACGCCATTTAGCAGCTGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485816" ref_strand="+" ref_description="SGN-E485816 [cSTE-19-L15]">
      <seq>tttcagctaccttttagagtgaattgaacaaagcagcagagcattcaccaaaaatggagcacaagaaaacagctaagcgtctccgttgtatcgtcaaactcggaggtgcagccatcacgtgtaaaaataaattggagactatagatgacgagaatcttaaggaagtttcatcccagattcgtcaagcatttgttccggattctacttctgcaaatgttcttggaatggattggagtaaaaggctgggacagtctgaagctccaagtttcgttaatgatttcggtgatcaaccatttgtggattcagaaagttttattgttgttcatggagcaggttcctttggacactttcaagctagcaagtcaggggttcataagggtggactaagccgacctcttgtcaaggccggttttgttgccacaagaatttcagtcacatccctcaatcttgaaatcgtgagagccctagcaagagagggtattccttccatcggaatgtctccattctcatgtggttggtcaacatgtcaaagaaatatgacggaggctgacatttccatggtcattaaagctattgatgctggttttatacctgtcctgcatgaagatgcagttctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="6070" stop="2760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5770" g_stop="5669" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5668" i_stop="4828" i_length="841">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4827" g_stop="4597" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="333" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4596" i_stop="4424" i_length="173">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4423" g_stop="4326" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="431" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4325" i_stop="3919" i_length="407">
            <donor d_prob="0.401" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3918" g_stop="3876" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="474" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3875" i_stop="3299" i_length="577">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3298" g_stop="3237" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="536" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3236" i_stop="3119" i_length="118">
            <donor d_prob="0.495" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3118" g_stop="3062" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="593" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E485816" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5770" e_stop="5669"/>
          <exon e_start="4827" e_stop="4597"/>
          <exon e_start="4423" e_stop="4326"/>
          <exon e_start="3918" e_stop="3876"/>
          <exon e_start="3298" e_stop="3237"/>
          <exon e_start="3118" e_stop="3062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATCCAACTTTTAGAGTGAATTGACCAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAACTAAGCGTCTCCGTTGTATCGTTAAACTCGGTGAACTATCCTTTTCCACTTTATTTGTCTACATTTGATTTGATTTGATTTGATATCTGTGTATTTGATTGACTCAAATAATCCTCAAATTGAGCATCTGTTTGGTACTTTATGAATAGAAAATGTTGTGCTACGATTCAATTGGCACTAATTTTGTGAATTGAACAGGGTTATAGTCAAACTAGATGAATCCATTGACTTGAACAGAGGATATGTGTAGATGAGCTCAACTAGTTTAGGATCGATGCGTAGTTGATTGATTGATTGATTTTACATACAATAACAACATGTCTAGTGTAGTCTTAGCGGGGTCTGAGGAGGGTAGAGTATGCGCAGACCTTACTTTAACTGAGATAAGATAGACGGTTTCTGATAGAACCTTGGCTAATGGAAGTACAAATGATACTAGAAAATAACAAAAACAATAGATTGTAGCGGAAATGCTAATTGATTGATTTTACCTACAACAACAATATATCGAGAGGGGTAGAGTATGTGCAGACCTTACTTCTACCTCATTGAGGTAGAGAGGTTGTTTCTAATAGACCATCGGCTCAAAGACATAATCAGTTTAGAAAAAGACGTAATGGAAGTACAAGGGACAATAGAAAATACTTAAACAAAAACAAAATATAGTAGCATAACATGTTAGTTGATTAATTGATTGACTTTACCTATAGGAGAAACTAGAAATAAAAACAATGTTGGTTAATGCTTTCTTTTGAGTTTGTATTTAACTATTTTAGGTTACTCTTAACACTGTATAAAGTGCATGTCTCTTCTTCTTTTTTATTTTACTTTGGAGATTTTGGATGCATTATTTGTTTACTTTTTAGTTCAGGAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCGTCCCAGATTCGTCAAGCATTTGTTCCGGACTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCAGTGATCAACCAGTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAGGTTGATACTATTTGAGTGTGTTTAGTCAGTAGCAGGATTTGTTAGGTTCAGTAGCCACAGCAAATTTCTTTGAATTATGAAATGAATAAACATAAGTCGACCCAATTTTGGTGCTATAGAAGGACAATTTGGATTTTAGTTTTGAGTAAAACATTTGTCATCATTGACTTCAGGTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGGCCTCTTGTCAAGGCAGGTTTTGTTGCCACAAGAATTTCAGTAAGCGCCAGACCTCACCTTTCCGTTTTCCACTTGTAACTTAGGACTAGCAGTGCTGTTGCTGAAACCAGTTAAATAGTTACCTCCACCCGTTTCTTTTTCATTCCTACGTTTCATGGCCTTATCATTTCGGGCTCAAATATTACATGAAATAATTCATGCATGCATCTTTGTTCTCCTCTTGTTTTGGACACATCTCCAGGATATTATGCAGGCTAAAATTCCATGCTCCTGAGAGATGTGTATTAGACTGTTCAGGGAATGACGGGTTTGGTGTTTACTGCACAAAATTAAGTGTTATGACCTAATTATTTGCTAGACTTCTTCGTCTATGCGATGATCCCCCTCTATGTTTCCTTCGACTCTCAGGTGCTATGTGACGGAATTTACATTTTTCTTTATTGCAGGTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAGGTACTTATAACAATTTCATTTCCATGCAACGAGCCTTTTAAGGCTGTCTATAAATATATCTTATTATGATTAAATATACCTGGTACCATAATACACAACATTTTCACATCTTCGTTCCATTGGGTCTCACTGTGGGCAGGGTTGGGAATTGATATGGATTTGGATTTTAAGTCCTGAGCATCTCTCTAATAGCCCAACTGCTTTATTGCATGACAAGAAATAGGATTTGAATAGACATTGTGAAGGCCATAGACAATTATTATATCAGATTGGAGGGGCTATATTGCTCTGCGGAAGATGTTACGAGGGCCTAAATCGTTTTGGTATCCTCTTTTAAGTTCCCACGTCACTCTTTAAGAAGCTAACATCCTCATTAATCAACACAAATTGTTGATATCCATAGTACTTGATGGCTGTCCATCCAGTCATTCTGCAAACAATTGACAGCTCTTCACGTACAAGGCTTGTTAATGATTCATTATAGACGCATATTTTCACCTTAAGGGGCGTACTTGCGTACAAATCTATGTCTCTCTCTTATCAGTGGATTCCTAAGAAATGGTTTTTGTTGTTGCAGAGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAATGTTAGAAGCCGAAATGAAGATCATTTTCATTAAATGGATATATTTCTATATTTTAAGCTCTTTCGAGAGAAAACAAAATTGTTCCTTGCTTGAAATTTGGCAACTTGTGCTTCTGCAGATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT</genome_strand>
        <mrna_strand>TTTCAGCTACCTTTTAGAGTGAATTGAACAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAGCTAAGCGTCTCCGTTGTATCGTCAAACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGACGAGAATCTTAAGGAAGTTTCATCCCAGATTCGTCAAGCATTTGTTCCGGATTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCGGTGATCAACCATTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAG.............................................................................................................................................................................GTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGACCTCTTGTCAAGGCCGGTTTTGTTGCCACAAGAATTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAAT......................................................................................................................ATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480525" ref_strand="+" ref_description="SGN-E480525 [cSTD-14-O19]">
      <seq>gaattgaacaaagcagcagcagcattcagcaaaaatggagcagaagaaaacatctaaacgtctccgttgtatcgtcaaactcggaggtgcagccatcacgtgtaaaaataaattggagactatagatgaggagaatcttaaggaagtttcatcccagattcgtcaagcatttgttccggattctacttctgcaaatgttcttggaatggattggagtaaaaggccgggacagtctgaagctccaagtttcgttaatgatttcggtgatcaaccagttgtggattcagaaagttatattgttgttcatggagcangttcctttggacactttcaagctagcaagtcaggggttcataagggtggactaagccagcctcttgtcaggctggttttgttgcaacaagaatttcagtcacatccctcaatcttgaaatcgtgagatccctagcaagagagggtattccttccatcggaatgtctccattctcatgtggntggtcaacatgtcaaagaaatatgacggaggctgacatttncatggtcattaaagctattgatgctggttttatacctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="6050" stop="2760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5750" g_stop="5669" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5668" i_stop="4828" i_length="841">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4827" g_stop="4597" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="314" r_length="231" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4596" i_stop="4424" i_length="173">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4423" g_stop="4326" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="411" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4325" i_stop="3919" i_length="407">
            <donor d_prob="0.401" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3918" g_stop="3876" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="454" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3875" i_stop="3299" i_length="577">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3298" g_stop="3237" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="516" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3236" i_stop="3119" i_length="118">
            <donor d_prob="0.495" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3118" g_stop="3062" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="573" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E480525" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5750" e_stop="5669"/>
          <exon e_start="4827" e_stop="4597"/>
          <exon e_start="4423" e_stop="4326"/>
          <exon e_start="3918" e_stop="3876"/>
          <exon e_start="3298" e_stop="3237"/>
          <exon e_start="3118" e_stop="3062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGACCAAAGCAGCAG-AGCATTCACCAAAAATGGAGCACAAGAAAACAACTAAGCGTCTCCGTTGTATCGTTAAACTCGGTGAACTATCCTTTTCCACTTTATTTGTCTACATTTGATTTGATTTGATTTGATATCTGTGTATTTGATTGACTCAAATAATCCTCAAATTGAGCATCTGTTTGGTACTTTATGAATAGAAAATGTTGTGCTACGATTCAATTGGCACTAATTTTGTGAATTGAACAGGGTTATAGTCAAACTAGATGAATCCATTGACTTGAACAGAGGATATGTGTAGATGAGCTCAACTAGTTTAGGATCGATGCGTAGTTGATTGATTGATTGATTTTACATACAATAACAACATGTCTAGTGTAGTCTTAGCGGGGTCTGAGGAGGGTAGAGTATGCGCAGACCTTACTTTAACTGAGATAAGATAGACGGTTTCTGATAGAACCTTGGCTAATGGAAGTACAAATGATACTAGAAAATAACAAAAACAATAGATTGTAGCGGAAATGCTAATTGATTGATTTTACCTACAACAACAATATATCGAGAGGGGTAGAGTATGTGCAGACCTTACTTCTACCTCATTGAGGTAGAGAGGTTGTTTCTAATAGACCATCGGCTCAAAGACATAATCAGTTTAGAAAAAGACGTAATGGAAGTACAAGGGACAATAGAAAATACTTAAACAAAAACAAAATATAGTAGCATAACATGTTAGTTGATTAATTGATTGACTTTACCTATAGGAGAAACTAGAAATAAAAACAATGTTGGTTAATGCTTTCTTTTGAGTTTGTATTTAACTATTTTAGGTTACTCTTAACACTGTATAAAGTGCATGTCTCTTCTTCTTTTTTATTTTACTTTGGAGATTTTGGATGCATTATTTGTTTACTTTTTAGTTCAGGAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCGTCCCAGATTCGTCAAGCATTTGTTCCGGACTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCAGTGATCAACCAGTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAGGTTGATACTATTTGAGTGTGTTTAGTCAGTAGCAGGATTTGTTAGGTTCAGTAGCCACAGCAAATTTCTTTGAATTATGAAATGAATAAACATAAGTCGACCCAATTTTGGTGCTATAGAAGGACAATTTGGATTTTAGTTTTGAGTAAAACATTTGTCATCATTGACTTCAGGTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGGCCTCTTGTCAAGGCAGGTTTTGTTGCCACAAGAATTTCAGTAAGCGCCAGACCTCACCTTTCCGTTTTCCACTTGTAACTTAGGACTAGCAGTGCTGTTGCTGAAACCAGTTAAATAGTTACCTCCACCCGTTTCTTTTTCATTCCTACGTTTCATGGCCTTATCATTTCGGGCTCAAATATTACATGAAATAATTCATGCATGCATCTTTGTTCTCCTCTTGTTTTGGACACATCTCCAGGATATTATGCAGGCTAAAATTCCATGCTCCTGAGAGATGTGTATTAGACTGTTCAGGGAATGACGGGTTTGGTGTTTACTGCACAAAATTAAGTGTTATGACCTAATTATTTGCTAGACTTCTTCGTCTATGCGATGATCCCCCTCTATGTTTCCTTCGACTCTCAGGTGCTATGTGACGGAATTTACATTTTTCTTTATTGCAGGTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAGGTACTTATAACAATTTCATTTCCATGCAACGAGCCTTTTAAGGCTGTCTATAAATATATCTTATTATGATTAAATATACCTGGTACCATAATACACAACATTTTCACATCTTCGTTCCATTGGGTCTCACTGTGGGCAGGGTTGGGAATTGATATGGATTTGGATTTTAAGTCCTGAGCATCTCTCTAATAGCCCAACTGCTTTATTGCATGACAAGAAATAGGATTTGAATAGACATTGTGAAGGCCATAGACAATTATTATATCAGATTGGAGGGGCTATATTGCTCTGCGGAAGATGTTACGAGGGCCTAAATCGTTTTGGTATCCTCTTTTAAGTTCCCACGTCACTCTTTAAGAAGCTAACATCCTCATTAATCAACACAAATTGTTGATATCCATAGTACTTGATGGCTGTCCATCCAGTCATTCTGCAAACAATTGACAGCTCTTCACGTACAAGGCTTGTTAATGATTCATTATAGACGCATATTTTCACCTTAAGGGGCGTACTTGCGTACAAATCTATGTCTCTCTCTTATCAGTGGATTCCTAAGAAATGGTTTTTGTTGTTGCAGAGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAATGTTAGAAGCCGAAATGAAGATCATTTTCATTAAATGGATATATTTCTATATTTTAAGCTCTTTCGAGAGAAAACAAAATTGTTCCTTGCTTGAAATTTGGCAACTTGTGCTTCTGCAGATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT</genome_strand>
        <mrna_strand>GAATTGAACAAAGCAGCAGCAGCATTCAGCAAAAATGGAGCAGAAGAAAACATCTAAACGTCTCCGTTGTATCGTCAAACTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCATCCCAGATTCGTCAAGCATTTGTTCCGGATTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCCGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCGGTGATCAACCAGTTGTGGATTCAGAAAGTTATATTGTTGTTCATGGAGCAN.............................................................................................................................................................................GTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCAGCCTCTTGTC-AGGCTGGTTTTGTTGCAACAAGAATTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATCCCTCAATCTTGAAATCGTGAGATCCCTAGCAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGNTGGTCAACATGTCAAAGAAAT......................................................................................................................ATGACGGAGGCTGACATTTNCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555831" ref_strand="+" ref_description="SGN-E555831 [cTSD-1-I4]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccagtgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgctatgttctgaaccatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccagagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaagaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactactatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgccgatagcccaaacagtaaaacaatcaaagcataaatgacacgcgaaacgatgagggtggcaattagaggcaagaaagagtacaaaaccgacttcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8647" g_length="911"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="911" r_length="911" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E555831" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATA</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCAGTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCTATGTTCTGAACCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAGAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAGAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACTATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCGATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATGAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555965" ref_strand="+" ref_description="SGN-E555965 [cTSD-1-P22]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgccaatagcccaaacagtaaaacaatcaaagcataaatgacacgcgaaacgataagggtggcaattagagggcagaaagagtacaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8637" g_length="901"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="901" r_length="901" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E555965" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAAC</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGGCAGAAAGAGTACAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556140" ref_strand="+" ref_description="SGN-E556140 [cTSD-2-I21]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgcccatagcccaaacagtaaaacaatcaaaagcataaatgacacgccaaaacgataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8604" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="870" r_length="870" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E556140" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATC-AAAGCATAAATGACACG-CGAAACGATAAG</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCCATAGCCCAAACAGTAAAACAATCAAAAGCATAAATGACACGCCAAAACGATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555959" ref_strand="+" ref_description="SGN-E555959 [cTSD-1-P14]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgccaatagcccaaacagtaaaacaatcaaagcataaatgacacgcgaaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8600" g_length="864"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="864" r_length="864" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E555959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGA</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556792" ref_strand="+" ref_description="SGN-E556792 [cTSD-4-J5]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgccaatagcccaaacagtaaaaacatcaaagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8583" g_length="847"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="847" r_length="847" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E556792" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>847</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATA</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAAACATCAAAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554680" ref_strand="+" ref_description="SGN-E554680 [cTSC-5-B15]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8523" g_length="787"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="787" r_length="787" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E554680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAA</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556277" ref_strand="+" ref_description="SGN-E556277 [cTSD-2-P20]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatggaccaattaacctgcaacccacataacaaccaatacaacaagtacacctacaaaaacacccaaaccctttagtaattcgaatcgtaacccacttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8513" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E556277" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAAT-GACCAATTAACCTGCAA-CCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAA</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGGACCAATTAACCTGCAACCCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCC-TTTAGTAATTCGAATCGTAACCCACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554677" ref_strand="+" ref_description="SGN-E554677 [cTSC-5-B11]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtaggtgtgttacagctacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataaagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8495" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E554677" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTT-T-TTACAG-TACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACAT-AAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCG</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGGTGTGTTACAGCTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554688" ref_strand="+" ref_description="SGN-E554688 [cTSC-5-B24]">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtatcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacctgtgaagagtgccaatcagaaccccgaaaaatagctncactgactacgccacccatctcatccccttcaccaaataaagcacttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="8662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="8362" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E554688" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="8362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAAT-CCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAAT-AAGCACTTCTT</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTATCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCTGTGAAGAGTGCCAATCAGAACCCCGAAAAATAGCTNCACTGACTACGCCACCCATCTCATCCCCTTCACCAAATAAAGCACTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555538" ref_strand="+" ref_description="SGN-E555538 [cTSC-5-A23]">
      <seq>aaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacttacaacttgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacagccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccttagcttgtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7447" stop="8528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7747" g_stop="8229" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E555538" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7747" e_stop="8229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAAC-GCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCA</genome_strand>
        <mrna_strand>AAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACTTACAACTTGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACAGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCTTAGCTTGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556268" ref_strand="+" ref_description="SGN-E556268 [cTSD-2-P1]">
      <seq>caaatcgtttggatatagtaatcaaactaacatttaattgaagaagtgatactagtagtttttactgctacctacacgatatgtagaagctagaaaagagatccaacttgcaacctgcttcaacaaacttataacatattgaaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccatttaagtaattcgaatcgtaacccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7451" stop="8810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7751" g_stop="8510" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E556268" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7751" e_stop="8510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAG-TACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAA-TTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCA-TTAAGTAATTCGAATCGTAACCCACTT</genome_strand>
        <mrna_strand>CAAATCGTTTGGATATAGTAATCAAACTAACATTTAATTGAAGAAGTGATACTAGTAGTTTTTACTGCTACCTACACGATATGTAGAAGCTAGAAAAGAGATCCAACTTGCAACCTGCTTCAACAAACTTATAACATATTGAAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTTAAGTAATTCGAATCGTAACCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557158" ref_strand="+" ref_description="SGN-E557158 [cTSD-4-O13]">
      <seq>catttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7456" stop="8674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7756" g_stop="8373" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="618" r_length="618" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E557158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7756" e_stop="8373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTG</genome_strand>
        <mrna_strand>CATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221541" ref_strand="+" ref_description="SGN-E221541 [cLEL-10-J10](-)">
      <seq>gcttcgctactctcctgatgcttcagaacattgcagcgagtgtcgtgttgtatatgtattgcaaggcgttgcacggggagctagcattggatatcgcagaggagtttgctcgcgagtatgtctacttgccttttgacaatgagaaggttcctcatgttgtatgtgttgttcaaagttgaaacagtcttaaggtcagtgggttcaagacgcagtctttactttgtattttgtagaaattatggttttaatcatgtatcgagttccatagtagttaagaaatcatgtgaagatgctttacaatatgtaataagtttgttgaagcaggttgcaattggatctcttttctagcttctacatattgtgtaggtactgtaaaaactacttgtatcatttcctcaattaaatgttagtttgattactatatccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8486" stop="7458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8186" g_stop="7759" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="443"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E221541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8186" e_stop="7759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</genome_strand>
        <mrna_strand>GCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346080" ref_strand="+" ref_description="SGN-E346080 [cTOF-24-J24]">
      <seq>tactctcctgatgcttcagaacattgcagcgagtgtcgtgttgtatatgtattgcaaggcgttgcacggggagctagcattggatatcgcagaggagtttgctcgcgagtatgtctacttgccttttgacaatgagaaggttcctcatgttgtatgtgttgttcaaagttgaaacagtcttaaggtcagtgggttcaagacgcagtctttactttgtattttgtagaaattatggttttaatcatgtatcgagttccatagtagttaagaaatcatgtgaagatgctttacaatatgtaataagtttgttgaagcaggttgcaattggatctcttttctagcttctacatattgtgtaggtactgtaaaaactacttgtatcatttcctcaattaaatgttagtttgattactatatccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8479" stop="7458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8179" g_stop="7759" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E346080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8179" e_stop="7759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</genome_strand>
        <mrna_strand>TACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221951" ref_strand="+" ref_description="SGN-E221951 [cLEL-10-J10](-)">
      <seq>ttgcaaggcgttgcacgggaagctagcattggatatcgcagaggagtttgctcgcgagtatgtcaacttgccttttgacaatgagaaggttcctcatgttgtatgtgttgttcaaagttgaaacagtcttaaggtcagtgggttcaagacgcagtctttactttgtattttgtagaaattatggttttaatcatgtatcgagttccatagtagttaagaaatcatgtgaagatgctttacaatatgtaataagtttgttgaagcaggttgcaattggatctcttttctagcttctacatattgtgtaggtactgtaaaaactacttgtatcatttcctcaattaaatgttagtttgattactatatcccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8428" stop="7458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8128" g_stop="7759" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="385"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E221951" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8128" e_stop="7759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</genome_strand>
        <mrna_strand>TTGCAAGGCGTTGCACGGGAAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCAACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553901" ref_strand="+" ref_description="SGN-E553901 [cTSC-2-J18]">
      <seq>atatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaccccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgccaatagcccaaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7463" stop="8865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7763" g_stop="8565" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="803" r_length="803" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E553901" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7763" e_stop="8565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAG</genome_strand>
        <mrna_strand>ATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTACCCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733890" ref_strand="+" ref_description="SGN-E733890 [LB11AH07]">
      <seq>attggattgttagtgggtggttgttcaagttttctggtgagtgtaggagctgctagtggtgggtggacaagctttggggtgatattgcagatggtggtgagttcgggcttcgctactctcctgatgcttcagaacattgcagcgagtgtcgtgttgtatatgtattgcaaggcgttgcacggggagctagcattggatatcgcagaggagtttgctcgcgagtatgtctacttgccttttgacaatgagaaggttcctcatgttgtatgtgttgttcaaagttgaaacagtcttaaggtcagtgggttcaagacgcagtctttactttgtattttgtagaaattatggttttaatcatgtatcgagttccatagtagttaagaaatcatgtgaagatgctttacaatatgtaataagtttgttgaagcaggttgcaattggatctcttttctagcttctacatattgtgtaggtactgtaaaaactacttgtatcatttcctcaattaaatgttagtttgattactataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8592" stop="7464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8292" g_stop="7765" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="541"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E733890" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8292" e_stop="7765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTAT</genome_strand>
        <mrna_strand>ATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215761" ref_strand="+" ref_description="SGN-E215761 [cLEL-15-C7](-)">
      <seq>agtttgctcgcgagtatgtctacttgccttttgacaatgagaaggttcctcatgttgtatgtgttgttcaaagttgaaacagtcttaaggtcagtgggttcaagacgcagtctttactttgtattttgtagaaattatggttttaatcatgtatcgagttccatagtagttaagaaatcatgtgaagatgctttacaatatgtaataagtttgttgaagcaggttgcaattggatctcttttctagcttctacatattgtgtaggtactgtaaaaactacttgtatcatttcctcaattaaatgttagtttgattactaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8384" stop="7464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8084" g_stop="7767" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="339"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E215761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8084" e_stop="7767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACT</genome_strand>
        <mrna_strand>AGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555325" ref_strand="+" ref_description="SGN-E555325 [cTSC-1-K13]">
      <seq>atcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaaagaaactgcacaccctgcaccacaatcacccgccaatagcccaaacagtaaaacaatcaaagcataattgacacgcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7471" stop="8895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7771" g_stop="8595" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E555325" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7771" e_stop="8595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCC-AAGAAACTGCACACCCTGCACCACAATCA-CCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGA</genome_strand>
        <mrna_strand>ATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAAGAAACTGCACACCCTGCACCACAATCACCCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAATTGACACGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554659" ref_strand="+" ref_description="SGN-E554659 [cTSC-5-A12]">
      <seq>atcaaactaacatttaattgaggaaatgatacaagttagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgctacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7471" stop="8417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7771" g_stop="8117" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E554659" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7771" e_stop="8117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAACTAACATTTAATTGAGGAAATGATACAAG-TAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCA</genome_strand>
        <mrna_strand>ATCAAACTAACATTTAATTGAGGAAATGATACAAGTTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCTACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216027" ref_strand="+" ref_description="SGN-E216027 [cLEL-13-L12](-)">
      <seq>ctagcattggatatcgcagaggagtttgctcgcaagtatgtcaacttgccttttgccaatgagaaggttcctcatgttgtatgtgttgttcaaagttgaaccagtcttaaggtcagtaggttcaagacgcagtctttactttgtatcttgtagaaattatggttttaatcatgtatcgagttccatagtagttaagaaatcatgtgaatatgctttacaatatgtaataagtttgttgaagcaggttgcaattgggtctcttttctagcttcaacatattgtgtaggacctgtaaaaactccttgtatcatttcctccattaaatgttagtttggttcctaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8406" stop="7464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8106" g_stop="7773" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="341" polyA_stop="359"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E216027" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8106" e_stop="7773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTG</genome_strand>
        <mrna_strand>CTAGCATTGGATATCGCAGAGGAGTTTGCTCGCAAGTATGTCAACTTGCCTTTTGCCAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAACCAGTCTTAAGGTCAGTAGGTTCAAGACGCAGTCTTTACTTTGTATCTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAATATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGGTCTCTTTTCTAGCTTCAACATATTGTGTAGGACCTGTAAAAACTCCTTGTATCATTTCCTCCATTAAATGTTAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707548" ref_strand="+" ref_description="SGN-E707548 [FA33BC10]">
      <seq>cattaagcggataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcagggtgtgcagtttcttgggtttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtacttgttgtattggttgttatgtggttgcaggttaattggtcattagcttatgtgattgtagttgtggaatcgaaatggggttaccaagcattgcgaagaagtgcttatttggtgaaggggatgagatgggtggcgttgtcagtgttgctatttttcggggttctgattggattgttagtgggtggttgttcaagttttctggtgagtgtaggagctgctagtggtgggtggacaagctttggggtgatattgcagatggtggtgagttcgggcttcgctactctcctgatgcttcagaacattgcagcgagtgtcgtgttgtatatgtattgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9291" stop="7822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8996" g_stop="8122" g_length="875"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="874" r_length="874" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E707548" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8996" e_stop="8122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAG</genome_strand>
        <mrna_strand>CAT-TAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402211" ref_strand="+" ref_description="SGN-E402211 [PPC-7-G5]">
      <seq>tctgtcccttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtctgttttgtactctttcttgcctctagttgccacccttatcgtttcgcgtgtcatttatgctttaattgttctactgtttgggctattggcggtgattgtggtacagggtgtgcagtttctgggttttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtagtggttgtattggttgttatgtggttgcatgttaattggtcattagcttatgtgattgtagttgtggaatcgaaatggggttacgaagcattgcaaagaagtgcttatttggtgaaggggatgagatgggtggcgttatcggtgttgctatttttcggggttctgattggattgctagtgggtggttgttctagttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9028" stop="7957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8728" g_stop="8257" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E402211" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8728" e_stop="8257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTG</genome_strand>
        <mrna_strand>TCTGTCCCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCTGTTTTGTACTCTTTCTTGCCTCTAGTTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTAATTGTTCTACTGTTTGGGCTATTGGCGGTGATTGTGGTACAGGGTGTGCAGTTTCTGGGTTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTAGTGGTTGTATTGGTTGTTATGTGGTTGCATGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACGAAGCATTGCAAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTATCGGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGCTAGTGGGTGGTTGTTCTAGTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698028" ref_strand="+" ref_description="SGN-E698028 [FA05AB10]">
      <seq>ccctttttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcagggtgtgcagtttcttgggtttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtacttgttgtattggttgttatgtggttgcaggttaattggtcattagcttatgtgattgtagttgtggaatcgaaatggggttaccaagcattgcgaagaagtgcttatttggtgaaggggatgagatgggtggcgttgtcagtgttgctatttttcggggttctgattggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9245" stop="7985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8950" g_stop="8285" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E698028" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8950" e_stop="8285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATT</genome_strand>
        <mrna_strand>CCCTTTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407103" ref_strand="+" ref_description="SGN-E407103 [PPI-6-C1]">
      <seq>aatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctcgttttccctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttcacacacacccatctcacctttccttctccttcacctccactgacccatatgacccgattcggaatctgacccaaccggatccccagtcccttcttcttctccttgcgtacacccttttggctgctgttctgtcccttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtctgttttgtactctttcttgcctctagttgccacccttatcgtttcgcgtgtcatttatgctttaattgttctactgtttgggctattggcggtgattgtggtacagggtgtgcagtttctgggttttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtagtggttgtattggttgttatgtggttgcatgttaattggtcattagcttatgtgattgtagttgtggaatcgaaatggggttacgaagcattgcaaagaagtgcttatttggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9283" stop="8044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8983" g_stop="8344" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E407103" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8983" e_stop="8344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTG</genome_strand>
        <mrna_strand>AATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCGTTTTCCCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTCACACACACCCATCTCACCTTTCCTTCT-C--CTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATCCCCAGTCCCTTCTTCTTCTCCTTGCGTACACCCTTTTGGCTGCTGTTCTGTCCCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCTGTTTTGTACTCTTTCTTGCCTCTAGTTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTAATTGTTCTACTGTTTGGGCTATTGGCGGTGATTGTGGTACAGGGTGTGCAGTTTCTGGGTTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTAGTGGTTGTATTGGTTGTTATGTGGTTGCATGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACGAAGCATTGCAAAGAAGTGCTTATTTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248047" ref_strand="+" ref_description="SGN-E248047 [cLEF-47-B9]">
      <seq>atccacacacccttaatctctggggagtactttcccaatcaaagcgggtaatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcagggtgtgcagtttcttgggtttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtacttgttgtattggttgttatgtggttgcaggttaattggtcattagcttatgtgattgtagttgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9332" stop="8090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9032" g_stop="8390" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E248047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9032" e_stop="8390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGA</genome_strand>
        <mrna_strand>ATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGGTAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618590" ref_strand="+" ref_description="SGN-E618590 [69270]">
      <seq>ggtttccttgttccaattcttcatcatcatcttcaatgtctggttatccacatacccttaatctctggggagtactttcccaatcaaagcgtataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctcgttttccctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttcacacacacccatctcacctttccttctccttcacctccactgacccatatgacccgattcggaatctgacccaaccggatccccagtcccttcttcttctccttgcgtacacccttttggctgctgttctgtcccttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtctgtttggtactctttcttgcctctagttgccacccttatcgtttcgcgtgtcatttatgctttaattgttctactgtttgggctattggcggtgattgtggtacagggtgtgcagtttctgggttttgaagtgggttacgattcgaattacttaatgggttggggtgtataggtaggtgtagtggttgtatcggtaggtatgtggttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9361" stop="8129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9361" g_stop="9358" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="18" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9357" i_stop="9060" i_length="298">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9059" g_stop="8428" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="647" r_length="629" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E618590" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9361" e_stop="9358"/>
          <exon e_start="9059" e_stop="8428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTAAGTTAGTGATTGAAATTTGAAAATGTGTTAATCAGTATTTTATTAATCATATCAAATTTGTGTTAGTTTAATTAGAGGTTAGTAAAAAATTAAATAATTATATCGAAATATATAAATCGAATCGAATTGACCAAAGGCTAATGGAAAGACCAATTTTCTAGTGAATTGAGTAAAATATTGAACCTTATTGCCACTTGTCTCCTCCTTCACATCAATCCTGAAAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAG</genome_strand>
        <mrna_strand>AATT..........................................................................................................................................................................................................................................................................................................CTTCATCATCATCTTCAATGTCTGGTTATCCACATACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGTATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCGTTTTCCCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTCACACACACCCATCTCACCTTTCCTTCT-C--CTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATCCCCAGTCCCTTCTTCTTCTCCTTGCGTACACCCTTTTGGCTGCTGTTCTGTCCCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCTGTTTGGTACTCTTTCTTGCCTCTAGTTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTAATTGTTCTACTGTTTGGGCTATTGGCGGTGATTGTGGTACAGGGTGTGCAGTTTCTGGGTTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTGGGGTGTATAGGTAGGTGTAGTGGTTGTATCGGTAGGTATGTGGTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271633" ref_strand="+" ref_description="SGN-E271633 [cLEM-23-G3]">
      <seq>gaggcccgattccaatctttttaaccgaccacccatctcacctttccttctgcttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtaccacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaaggcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcaaggtgtgcagtttcttgggtttgaagtgggttaccattcgaattacttaatgggtttgggtgtttttgtaggtgtacttgttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9176" stop="8148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8881" g_stop="8448" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E271633" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8881" e_stop="8448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCCGATTCCAACCTTTTTAACCGA-CACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTA-CACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTAT</genome_strand>
        <mrna_strand>GAGGCCCGATTCCAATCTTTTTAACCGACCACCCATCTCACCTTTCCTTCTGCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACCACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGGCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAAGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACCATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401901" ref_strand="+" ref_description="SGN-E401901 [PPC-5-P1]">
      <seq>ggattttatggaagacccgtcaagcttgtttcgtctatgaagtctgttttgtactctttcttgcctctagttgccacccttatcgtttcgcgtgtcatttatgctttaattgttctactgtttgggctattggcggtgattgtggtacagggtgtgcagtttctgggttttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtagtggttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8982" stop="8148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8682" g_stop="8448" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E401901" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8682" e_stop="8448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTAT</genome_strand>
        <mrna_strand>GGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCTGTTTTGTACTCTTTCTTGCCTCTAGTTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTAATTGTTCTACTGTTTGGGCTATTGGCGGTGATTGTGGTACAGGGTGTGCAGTTTCTGGGTTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTAGTGGTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249252" ref_strand="+" ref_description="SGN-E249252 [cLEF-50-B20]">
      <seq>tcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcaaggtgtgcagtttcttgggtttgaagtgggttacgattcgaattacttaatgggtttgggtgtttttgtaggtgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9274" stop="8157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8974" g_stop="8457" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E249252" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8974" e_stop="8457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTAC</genome_strand>
        <mrna_strand>TCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAAGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339116" ref_strand="+" ref_description="SGN-E339116 [cTOF-6-E16]">
      <seq>agccccaaatacaaaaacagagactagtttttctcatcatctctttggtttcttcatcatcatcttcaatgtctggttatccacacacccttaatctctggggagtactttcccaatcaaagcggataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtntcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcanggtgtgcagtttcttgggtttgaagtgggttacgattcgaatacttaatggtttggggtgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9411" stop="8167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9111" g_stop="8467" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E339116" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9111" e_stop="8467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCCCAAATCACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTT</genome_strand>
        <mrna_strand>AGCCCCAAAT-ACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTNTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCANGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAA-TACTTAATGGTTTGGGGTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308079" ref_strand="+" ref_description="SGN-E308079 [cLEY-14-H18]">
      <seq>acacacccttaatctctggggagtactttcccaatcaaagcggataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcanggtgtgcagtttcttgggtttgaagtgggttacgattcgaattacttaatgggtttgggtgttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9328" stop="8167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9028" g_stop="8467" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E308079" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9028" e_stop="8467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTT</genome_strand>
        <mrna_strand>ACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCANGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549325" ref_strand="+" ref_description="SGN-E549325 [TUS-69-G1]">
      <seq>gtggattgaggaaaatattgaaccttattgccaattgtctcctccttcacatcaatcctgcaaaattcaagaaaagggaaaaaagccccaaatcacaaaaacagagaccagtttatctcatcatctctttggtttcttcatcatcatcttcaatgtctggttatccacatacccttaatctctggggagtactttcccaatcaaagcggataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttccctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttacctctaattgccactcttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtacagggtgtgcagtttcttgggtttgaagtgggctacgattcgaaatacttaatgggtttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9494" stop="8175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9194" g_stop="8475" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E549325" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9194" e_stop="8475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTGAGTAAAATATTGAACCTTATTGCCACTTGTCTCCTCCTTCACATCAATCCTGAAAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGG</genome_strand>
        <mrna_strand>GTGGATTGAGGAAAATATTGAACCTTATTGCCAATTGTCTCCTCCTTCACATCAATCCTGCAAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACCAGTTTATCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACATACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCCCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTACCTCTAATTGCCACTCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTACAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGCTACGATTCGAAATACTTAATGGGTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308053" ref_strand="+" ref_description="SGN-E308053 [cLEY-14-H17]">
      <seq>acacacccttaatctctggggagtactttcccaatcaaagcggataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctctttttctctcatcatctatcctactcttcaaaccgctctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcggttttgtactctttcttgcctctaattgccacccttatcgtttcgcgtgtcatttatgctttgattgttttactgtttgggctattggcggtgattgtggtgcanggtgtgcagtttcttgggtttgaagtgggttacgattcgaattacttaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9328" stop="8181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9028" g_stop="8481" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E308053" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9028" e_stop="8481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGG</genome_strand>
        <mrna_strand>ACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCANGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546419" ref_strand="-" ref_description="SGN-E546419 [TUS-69-M10]">
      <seq>cgccaatagcccaaacagtaaaacaatcaaagcataaatgacacgcgaaacgataagagtggcaattagaggtaagaaagagtacaaaaccgacttcatagacgaaacaagcttgacgggtcttccataaaatccatggaaagtactgtagctgattgtagccaacgccaaaagagacagaacagaagctaaaagggtgtacacaaggagaagaagaagggactgggaatccggttgggtcagattccgaatcgggtcatatgggtctgtggaggtgaagaaagagaaggaaaggtgagatgggtgtcggttaaaaaggttggaatcggagtgaaagagagcggtttgaagagtaggatagatgatgagggaaaaagagagaggcaaaaggaaggaaactgaaagggctaagaaatggcgtgagtgagcattgattatccgctttgattgggaaagtactccccagagattaagggtatgtggataaccagacattgaagatgatgatgaagaaaccaaagagatgatgagataaactggtctctgtttttgtgatttggggcttttttcccttttcttgaattttgcaggattgatgtgaaggtggagacaattggcaataaggttcaatattttcctcaatccactagaaaattttttttaaagcagaaaataacatgtattactttatgaagattgggttgtatcagttgtcaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="8248" stop="50080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8548" g_stop="9202" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9203" i_stop="9546" i_length="344">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9547" g_stop="9574" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="683" r_length="28" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9575" i_stop="9759" i_length="185">
            <donor d_prob="0.635" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9760" g_stop="9771" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="695" r_length="12" r_score="0.583"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9772" i_stop="9915" i_length="144">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.080" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9916" g_stop="9949" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="728" r_length="33" r_score="0.618"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9950" i_stop="10230" i_length="281">
            <donor d_prob="0.552" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10231" g_stop="10257" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="754" r_length="26" r_score="0.630"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E546419" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546419" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8548" e_stop="9202"/>
          <exon e_start="9547" e_stop="9574"/>
          <exon e_start="9760" e_stop="9771"/>
          <exon e_start="9916" e_stop="9949"/>
          <exon e_start="10231" e_stop="10257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATAGACGAAACAAGCTTGACGGGTCTTCCATAAAATCCATGGAAAGTACTGTAGCTGATTGTAGCCAACGCCAAAAGAGACAGAACAGAAGCTAAAAGGGTGTACACAAGGAGAAGAAGAAGGGACTGGGAATCCGGTTGGGTCAGATTCCGAATCGGGTCATATGGGTCAGTGGAGGTGAAGAAGGAGAAGGAAAGGTGAGATGGGTGTCGGTTAAAAAGGTTGGAATCGGAGTGAAAGAGAGCGGTTTGAAGAGTAGGATAGATGATGAGAGAAAAAGAGAGAGGCAAAAGGAAGGAAACTGAAAGGGCTAAGAAATGGCGTGAGTGAGCATTGATTATCCGCTTTGATTGGGAAAGTACTCCCCAGAGATTAAGGGTGTGTGGATAACCAGACATTGAAGATGATGATGAAGAAACCAAAGAGATGATGAGAAAAACTAGTCTCTGTTTTTGTGATTTGGGGCTTTTTTCCCTTTTCTTGAATTTTTCAGGATTGATGTGAAGGAGGAGACAAGTGGCAATAAGGTTCAATATTTTACTCAATTCACTAGAAAATTGGTCTTTCCATTAGCCTTTGGTCAATTCGATTCGATTTATATATTTCGATATAATTATTTAATTTTTTACTAACCTCTAATTAAACTAACACAAATTTGATATGATTAATAAAATACTGATTAACACATTTTCAAATTTCAATCACTAACTTACAATTTTTGTCTTTAGATTTGGGTCACTCCAATTCCCCTCAATTGGGCCATATTGATATTGGGCTTGGCCTAGACTAGCCATTAGTGTCGTTAAATTCGATTTTTCGATTAAATCGAATTTAATTTGTTCAAAATCAAAAATCTAAATTAAAAAAGTTTGTTTTGATCAATTTTTTTCGATTTAAACCAGAGTGTGTGCAGCCGTACATATGATTCAAGCAAAGACAAGAAAATTGAATCATGGGATGTTTTTTAAGTCTTAACCTAACTTTTGGATTGAGTTACAATCGGGTGTCATGTGAAAAATATATCTTTCACCTAGTTCCGTGAGACTTGTCTAGTGTATTTCTACCATTCCGTTTGCACACAGGATAAACTCCAATCCATCTTCGCATTTAACGACCAGTTTACTATGGCAAGGCTCTTCAAGCAACTATTAAAAAGGGATAAAGTTTACGTACATTCTAAACATAATTATTTCGAATAGGTTGACATATGCTCATGTATATTAATGCAAAATCCATGTCATTCTAGCCAAATTTAAACCTTGTTTGAATAGTTTGTCATTCACCTAGTTCTAAAAGAGAAGAAAAGTAAGTCATTTAGACTATACATGAAAAGGTTGACTATTTGCTTTACTTAAGTGCTAAGATATTATTTTGCTAACATCTTTTTCAATAATAGAAGTATTTTTCTTACTTTATAAAATAGATTGTATACATGCATTTAAATATATGTTGAAATACTTTTGAGAGAATTATCAAAGTTTGGGTGGGTGGGTGAGAGTAATTATGGAGTTGTTCAATTATCAGATAGACAAAGCAAGTTAAGAATTGACAAAACATTTCATTTTCTGAGTAATAGTACAAATTTAACAACTACCTCCTAGTTTTTTTCTCTC</genome_strand>
        <mrna_strand>CGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGAGTGGCAATTAGAGGTAAGAAAGAGTACAAAACCGACTTCATAGACGAAACAAGCTTGACGGGTCTTCCATAAAATCCATGGAAAGTACTGTAGCTGATTGTAGCCAACGCCAAAAGAGACAGAACAGAAGCTAAAAGGGTGTACACAAGGAGAAGAAGAAGGGACTGGGAATCCGGTTGGGTCAGATTCCGAATCGGGTCATATGGGTCTGTGGAGGTGAAGAAAGAGAAGGAAAGGTGAGATGGGTGTCGGTTAAAAAGGTTGGAATCGGAGTGAAAGAGAGCGGTTTGAAGAGTAGGATAGATGATGAGGGAAAAAGAGAGAGGCAAAAGGAAGGAAACTGAAAGGGCTAAGAAATGGCGTGAGTGAGCATTGATTATCCGCTTTGATTGGGAAAGTACTCCCCAGAGATTAAGGGTATGTGGATAACCAGACATTGAAGATGATGATGAAGAAACCAAAGAGATGATGAGATAAACTGGTCTCTGTTTTTGTGATTTGGGGCTTTTTTCCCTTTTCTTGAATTTTGCAGGATTGATGTGAAGGTGGAGACAATTGGCAATAAGGTTCAATATTTTCCTCAATCCACTAGAAAAT........................................................................................................................................................................................................................................................................................................................................................TTTTTTTAAAGCAGAAAATAACATGTAT.........................................................................................................................................................................................TACTTTATGAAG................................................................................................................................................ATTGGGTTGTATC-AGTTGTCAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................AAAAAAAACT-CGAGACTAGTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334019" ref_strand="+" ref_description="SGN-E334019 [cTOD-24-C10]">
      <seq>tctctttcactccgattccaacctttttaaccgacacccatctcacctttccttctccttcttcacctccactgacccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctccttgtgtacacccttttagcttctgttctgtctcttttggcgttggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcgggtttgtactctttcttgcctctaattggcacccttatcgcttcgcgtggcatttatgctttgaatggtttactggttgggctattggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9187" stop="8248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8887" g_stop="8548" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E334019" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8887" e_stop="8548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCG</genome_strand>
        <mrna_strand>TCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGGTTTGTACTCTTTCTTGCCTCTAATTGGCACCCTTATCGCTTCGCGTGGCATTTATGCTTTGAATGGTTTACTGGTTGGGCTATTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365809" ref_strand="+" ref_description="SGN-E365809 [cLPT-8-C4]">
      <seq>ccatatgacccgattcggaatctgacccaaccggattcccagtcccttcttcttctgcttgtgtacacccttttagcttctgttctgtctcttttggcggtggctacaatcagctacagtactttccatggattttatggaagacccgtcaagcttgtttcgtctatgaagtcgggtttgtactctttcttgcctctaattgccacccttatcggttcgcgtgtcatttatgctttgaatggtttactggttgggctattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9111" stop="8250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8811" g_stop="8550" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E365809" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>262</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8811" e_stop="8550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGG</genome_strand>
        <mrna_strand>CCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTGCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGGTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGGTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGGTTCGCGTGTCATTTATGCTTTGAATGGTTTACTGGTTGGGCTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473408" ref_strand="+" ref_description="SGN-E473408 [cSTB-32-C4]">
      <seq>gagagaactagtctcgagttttttttttttttttttggtttccttgttcaattcttcatcatcatcttcaatgtctggttatccacatacccttaatctctggggagtactttcccaatcaaagcgtataatcaatgctcactcacgccatttcttagccctttcagtttccttccttttgcctctctcgttttccctcatcatctatcctactcttcaaaccgctctctttcactccgattccaaccttttttacacacacccatctcacctttccttctccttcacctccactgacccatatgacccgattcggaatctgacccaaccggatccccagtcccttcttcttctccttgcgtacacccttttggctgctgttctgtcccttttggcgttggctacaatcagctacagtactttccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="50068" stop="8381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9211" g_stop="9186" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.577"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9185" i_stop="9087" i_length="99">
            <donor d_prob="0.037" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9086" g_stop="8681" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="429" r_length="403" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E473408" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9211" e_stop="9186"/>
          <exon e_start="9086" e_stop="8681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACCAATTTTCTAGTGAATTGAGTAAAATATTGAACCTTATTGCCACTTGTCTCCTCCTTCACATCAATCCTGAAAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGG</genome_strand>
        <mrna_strand>GAGAGAACTAGTCTCGAGTTTTTTTT...................................................................................................TTTTTTTTTTGGTTTCCTTGTTCAATTCTTCATCATCATCTTCAATGTCTGGTTATCCACATACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGTATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCGTTTTCCCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTTACACACACCCATCTCACCTTTCCTTCT-C--CTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATCCCCAGTCCCTTCTTCTTCTCCTTGCGTACACCCTTTTGGCTGCTGTTCTGTCCCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356037" ref_strand="+" ref_description="SGN-E356037 [cLHT-21-J20]">
      <seq>gtggattgaggaaaatatagcaccttattgccaatggtctcctccttcacatcaatcctgcgaaattcaagaaaagggaaaaaagccccaaatcacaaaaacagagaccagtttatctcatcatctctttggtttcttcatcatcatcttcaatgtctggttatccacatacccttaatctttggggagtactttcccaatcaaagcggataatcaatgctcactcacgccatttcttagccctgacagtttccttccttttgcctgtctctttttccctcatcatctatcctactattcaaaccgctctctttcactccgattccaaccttgttaaccgacacccatctcacctttacttctccttcttcacctccactgacccatatgacccgattcagaatctgacccaaccggattcccagtcccttcttcttgtccttgagtacacccttttagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="9494" stop="8434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9194" g_stop="8734" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E356037" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9194" e_stop="8734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTGAGTAAAATATTGAACCTTATTGCCACTTGTCTCCTCCTTCACATCAATCCTGAAAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCT</genome_strand>
        <mrna_strand>GTGGATTGAGGAAAATATAGCACCTTATTGCCAATGGTCTCCTCCTTCACATCAATCCTGCGAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACCAGTTTATCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACATACCCTTAATCTTTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTGACAGTTTCCTTCCTTTTGCCTGTCTCTTTTTCCCTCATCATCTATCCTACTATTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTGTTAACCGACACCCATCTCACCTTTACTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCAGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTGTCCTTGAGTACACCCTTTTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316563" ref_strand="+" ref_description="SGN-E316563 [cTOA-25-J19]">
      <seq>ctgcaatgaactttttcctctgttaaacatccttttttttcattgaattgaagaagaacttgtgattttcatctgatcctgcctttgcttccttgtaaatttagtcaatagctatggaattcttatctatttttgtggaaaaactaactgattgcttgatccagccagttgcgcggcagattggttatttctactactacaagagaaacatgagatgtatggataaagaatgtgagaagctgaagaatatcagaatgacaatgcagcgaaaagcggaagatgccaggagaaacttacaagacatttcacctaatggcaaggtttggttaactagtgttgatacaactactgcagatgtggaaggcgtgatgcgaggtgtagctgaggttgaaaggggttgcttctatggtgtgtgcccgaatttgaagtcacgttactcgatgagtaggagagctaagaaaattacactggagttgattgaacttcaaaatgaaagcaataagcctgatgttttgtcatttgatcatccagtcgaaagtgaacctgaggctatgtgtagtaacaatgttgaggagtttgagtccagaaaattgaaggaggatgaggtcatggcagctttgagagatgacgaggttgctattattgggatatgtggtatggggtggagttggtaagacaacactgactgagaaaatcagacaaatggcgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="10384" stop="11696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10684" g_stop="11396" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E316563" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10684" e_stop="11396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATGAACTTTTTCCTCTGTTAAACATCCTTTTTTTTCATTGAATTGAAGAAGAACTTGTGATTTTCATCTGATCCTGCCTTTGCTTCCTTGTAAATTTAGTCAATAGCTATGGAATTCTTATCTATTTTTGTGGAAAAACTAACTGATTGCTTGATCCAGCCAGTTGCGCGGCAGATTGGTTATTTCTACTACTACAAGAGAAACATGAGATGTATGGATAAAGAATGTGAGAAGCTGAAGAATATCAGAATGACAATGCAGCGAAAAGCGGAAGATGCCAGGAGAAACTTACAAGACATTTCACCTAATGGCAAGGTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTAT-GGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAA</genome_strand>
        <mrna_strand>CTGCAATGAACTTTTTCCTCTGTTAAACATCCTTTTTTTTCATTGAATTGAAGAAGAACTTGTGATTTTCATCTGATCCTGCCTTTGCTTCCTTGTAAATTTAGTCAATAGCTATGGAATTCTTATCTATTTTTGTGGAAAAACTAACTGATTGCTTGATCCAGCCAGTTGCGCGGCAGATTGGTTATTTCTACTACTACAAGAGAAACATGAGATGTATGGATAAAGAATGTGAGAAGCTGAAGAATATCAGAATGACAATGCAGCGAAAAGCGGAAGATGCCAGGAGAAACTTACAAGACATTTCACCTAATGGCAAGGTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736051" ref_strand="+" ref_description="SGN-E736051 [LC04AF08]">
      <seq>gtttggttaactagtgttgatacactactgcagatgtggaaggcgtgatgcgaggtgtagctgaggttgaaaggggttgcttctatggtgtgtgcccgaatttgaagtcacgttactcgatgagtaggagagctaagaaaattacactggagttgattgaacttcaaaatgaaagcaataagcctgatgttttgtcatttgatcatccagtcgaaagtgaacctgaggctatgtgtagtaacaatgttgaggagtttgagtccagaaaattgaaggaggatgaggtcatggcagctttgagagatgacgaggttgctattattgggatatgtggtatgggtggagttggtaagacaacactgactgagaaaatcagacaaatggcgaaaaaagaaaggttgtttaaagatgttgtcatggtaattgtcagtcaacaaatagactttaaaagaattcaggatgagattgcaggaggagttgggctgacattagaaggggatgatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="10704" stop="11812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11004" g_stop="11512" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E736051" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11004" e_stop="11512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</genome_strand>
        <mrna_strand>GTTTGGTTAACTAGTGTTGATAC-ACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740022" ref_strand="+" ref_description="SGN-E740022 [LC19DA09]">
      <seq>gtttggttaactagtgttgatacaactactgcagatgtggaaggcgtgatgcgaggtgtagctgaggttgaaaggggttgcttctatggtgtgtgcccgaatttgaagtcacgttactcgatgagtaggagagctaagaaaattacactggagttgattgaacttcaaaatgaaagcaataagcctgatgttttgtcatttgatcatccagtcgaaagtgaacctgaggctatgtgtagtaacaatgttgaggagtttgagtccagaaaattgaaggaggatgaggtcatggcagctttgagagatgacgaggttgctattattgggatatgtggtatgggtggagttggtaagacaacactgactgagaaaatcagacaaatggcgaaaaaagaaaggttgtttaaagatgttgtcatggtaattgtcagtcaacaaatagactttaaaagaattcaggatgagattgcaggaggagttgggctgacattagaaggggatgatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="10704" stop="11812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11004" g_stop="11512" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E740022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11004" e_stop="11512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</genome_strand>
        <mrna_strand>GTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371299" ref_strand="+" ref_description="SGN-E371299 [TUS-27-K15]">
      <seq>ctcactcacttttgcaatgacactgttgagggcattgagttccctcggttgcggaaaatgcacttcagtagcttaccagagttccaaaatttctggcatacagccaacaactctatcactgactcaaatcctctttttgatgaaaaggtttcttgtcccaacctggaagatctgtatatcgatagggctgacagcataactgctctctggtctcaccaacttccaactacctacttcagtaaacttgtaaaattcgaagtagatggttgcggaaaattgacaaacttgatgtctccatcagtggccagaggtctcctgaatctccggaaactaaagatagaaaattgtgagtcaatggaagaagtgatcacagaagaggaacaacaaggagaagaaatcatgagtaatgagcctttattccccctgttggaacagctgaacctttacaatctgccaaagctggggcacttctttctagcgaagcgtggtcttgaatttccatttctcagggatgtgtgcattcataactgctctgaaatgaaggcgtttgtccaacagggaatatatgtgagtacaccgagtctcgaaagtgtaaacaatgatgatgaggtgaaagtggttgatctcaataaagcgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="13095" stop="14488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13395" g_stop="13541" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13542" i_stop="13693" i_length="152">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="14188" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="642" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E371299" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13395" e_stop="13541"/>
          <exon e_start="13694" e_stop="14188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAGGTTCCCTTCTAATGCTCTACATGTGACCTATCATGAAAAAAAGAAAAACTTTTATGAATTAAAAGCTACCTTTTACTTGAGCATTAGAGATATTTACTTACACAAAATCAAGTTCATAATCAAATAGATATTTATAAATTGTATATTTGCAGGTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAACTGCTCTGAAATGAAGGCGTTTGTCCAACAGGGAATATATGTGAGTACACCGAGTCTCGAAAGTGTAAACAATGATGATGAGGTGAAAGTGGTTGATCTCAATAAAGCGATGTTC</genome_strand>
        <mrna_strand>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAG........................................................................................................................................................GTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAACTGCTCTGAAATGAAGGCGTTTGTCCAACAGGGAATATATGTGAGTACACCGAGTCTCGAAAGTGTAAACAATGATGATGAGGTGAAAGTGGTTGATCTCAATAAAGCGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271222" ref_strand="+" ref_description="SGN-E271222 [cLEM-5-E24]">
      <seq>ctcactcacttttgcaatgacactgttgagggcattgagttccctcggttgcggaaaatgcacttcaatagcttaccagagttccaaaatttctggcatacagccaacaactctatcactgactcaaatcctctttttgatgaaaaggtttcttgtcccaacctggaagatctgtatatcgatagggctgacagcataactgctctctggtctcaccaacttccaactacctacttcagtaaacttgtaaaattcgaagtagatggttgcggaaaattgacaaacttgatgtctccatcagtggccagaggtctcctgaatctccggaaactaaagatagaaaattgtgagtcaatggaagaagtgatcacagaagaggaacaacaaggagaagaaatcatgagtaatgagcctttattccccctgttggaacagctgaacctttacaatctgccaaagctggggcacttctttctagcgaagcgtggtcttgaatttccatttctcagggatgtgtgcattcataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="13095" stop="14374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13395" g_stop="13541" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13542" i_stop="13693" i_length="152">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="14074" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="528" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E271222" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13395" e_stop="13541"/>
          <exon e_start="13694" e_stop="14074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAGGTTCCCTTCTAATGCTCTACATGTGACCTATCATGAAAAAAAGAAAAACTTTTATGAATTAAAAGCTACCTTTTACTTGAGCATTAGAGATATTTACTTACACAAAATCAAGTTCATAATCAAATAGATATTTATAAATTGTATATTTGCAGGTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAAC</genome_strand>
        <mrna_strand>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAATAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAG........................................................................................................................................................GTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314368" ref_strand="+" ref_description="SGN-E314368 [cTOA-21-G5]">
      <seq>gatctcaataaagcgatgttcaattctaaggtttcgtgtcccagactggaaaagctacaactcttttgtgctcatagtataactgctctatgctctcatcaacttccaacaggctactttagcaaacttgaagcgttgcatgtatcgttttgtggaaatttgagaaacttgatgtcttcatcagtggccaggggtgttttgaatctccaaattctacatataggatattgcgagttgatggaagaagtgatcacaaaagaggaacaaggagaagaaattatgacaaatgagcccttatttcccctgttggaagagttgaggcttcaaagcctgccaaagctggggcatttctttctcgctatgcacgctcttgaatttccatttctcagagaagtgtcgattcatgaatgccctgatataaagacgtttgtccaacagggatctgtgagtacaccgagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcancacataactgctctatgctctcaccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="13868" stop="15973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14168" g_stop="14197" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14198" i_stop="14421" i_length="224">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14422" g_stop="14919" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="528" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15600" g_stop="15673" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="602" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E314368" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14168" e_stop="14197"/>
          <exon e_start="14422" e_stop="14919"/>
          <exon e_start="15600" e_stop="15673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCAATAAAGCGATGTTCAATTCTAAGGTTTGTCTTGTGCCTCTAGTTGTTTAACTAATTACTGCTTTCTTTCCGCTTTAACTAGTAAATAGTAATAGTTATTTCTGTTTGTCACTTAAAGCAACTTTTTTTAGTTTTTACTTGTTGTTACTATGATGTAAGATGAGAATATGGTTCAATTTTGGATTTGTACTTTAAGCTATATTGATTTTCCATCCCTTATATAAAACACAAGGCCTCAACATTCGCAGGTTTCGTGTCCCAGACTGGAAAAGCTACAACTCTTTTGTGCTCATAGTATAACTGCTCTATGCTCTCATCAACTTCCAACAGGCTACTTTAGCAAACTTGAAGCGTTGCATGTATCGTTTTGTGGAAATTTGAGAAACTTGATGTCTTCATCAGTGGCCAGGGGTGTTTTGAATCTCCAAATTCTACATATAGGATATTGCGAGTTGATGGAAGAAGTGATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACT</genome_strand>
        <mrna_strand>GATCTCAATAAAGCGATGTTCAATTCTAAG................................................................................................................................................................................................................................GTTTCGTGTCCCAGACTGGAAAAGCTACAACTCTTTTGTGCTCATAGTATAACTGCTCTATGCTCTCATCAACTTCCAACAGGCTACTTTAGCAAACTTGAAGCGTTGCATGTATCGTTTTGTGGAAATTTGAGAAACTTGATGTCTTCATCAGTGGCCAGGGGTGTTTTGAATCTCCAAATTCTACATATAGGATATTGCGAGTTGATGGAAGAAGTGATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCANCACATAACTGCTCTATGCTCTCACCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203463" ref_strand="+" ref_description="SGN-E203463 [cLEC-15-C14]">
      <seq>gatcacaaaagaggaacaaggagaagaaattatgacaaatgagcccttatttcccctgttggaagagttgaggcttcaaagcctgccaaagctggggcatttctttctcgctatgcacgctcttgaatttccatttctcagagaagtgtcgattcatgaatgccctgatataaagacgtttgtccaacagggatctgtgagtacaccgagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcacaacataactgctctatgctctcaccaacttccaactgcctactttagcaaacttgaaagtttggatgtatcgacttgtggaaaattgagaaacttgatgtctccattactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="14340" stop="16055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14640" g_stop="14919" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15600" g_stop="15755" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="436" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E203463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14640" e_stop="14919"/>
          <exon e_start="15600" e_stop="15755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTG</genome_strand>
        <mrna_strand>GATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245853" ref_strand="+" ref_description="SGN-E245853 [cLEF-51-K19]">
      <seq>agaaattatgacaaatgagcccttatttcccctgttggaagagttgaggcttcaaagcctgccaaagctggggcatttctttctcgctatgcacgctcttgaatttccatttctcagagaagtgtcgattcatgaatgccctgatataaagacgtttgtccaacagggatctgtgagtacaccgagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcacaacataactgctctatgctctcaccaacttccaactgcctactttagcaaacttgaaagtttggatgtatcgacttgtggaaaattgagaaacttgatgtctccattactggctagaggtgttttgaatctccgaatactaaagatacaagactgtcaatcaatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="14364" stop="16113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14664" g_stop="14919" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15600" g_stop="15813" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="470" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E245853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14664" e_stop="14919"/>
          <exon e_start="15600" e_stop="15813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAG</genome_strand>
        <mrna_strand>AGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251314" ref_strand="+" ref_description="SGN-E251314 [cLEG-10-L22]">
      <seq>ctttctcgctatgcacgctcttgaatttccatttctcagagaagtgtcgattcatgaatgccctgatataaagacgtttgtccaacagggatctgtgagtacaccgagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcacaacataactgctctatgctctcaccaacttccaactgcctactttagcaaacttgaaagtttggatgtatcgacttgtggaaaattgagaaacttgatgtctccattactggctagaggtgttttgaatctccgaatactaaagatacaagactgtcaatcaatggaagaagtcatcacagaagaggaacaaggagaaaatatgactaatgggcccttatttccccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaagtgaaagtagatgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="14442" stop="16366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14742" g_stop="14919" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15600" g_stop="16066" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="645" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E251314" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14742" e_stop="14919"/>
          <exon e_start="15600" e_stop="16066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCT</genome_strand>
        <mrna_strand>CTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAAGTGAAAGTAGATGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736780" ref_strand="+" ref_description="SGN-E736780 [LC07AF10]">
      <seq>ccgagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcacaacataactgctctatgctctcaccaacttccaactgcctactttagcaaacttgaaagtttggatgtatcgacttgtggaaaattgagaaacttgatgtctccattactggctagaggtgttttgaatctccgaatactaaagatacaagactgtcaatcaatggaagaagtcatcacagaagaggaacaaggagaaaatatgactaatgggcccttatttccccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaggtgaaagtagatgatctgaatacatggatacaacagatgttcaattctaaggaagaagatgtaagtgatgactgtgaatatgaaaaagacgttactgacggtaatgaatctgaagaagatttaagtgatggctgtaaatctgaacaagatgtaagtgatggcagtgaatctgaatcttcagtccagtgaaggcagaagctagcatgttgtcgatgaatccaaagctatgaaggtaataagttctcgatggaatagtttaagtgtgacaagtgaagctcgaagacctatatatgctcgttatgaaagcagagatgtatacctgtaactttattagtaatatctagtatttccttgactgtgaacacaagtattatttttgatatcactgtaagattctataaaactttaattttgaaatccgactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="14545" stop="16962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14845" g_stop="14919" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15600" g_stop="16100" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="576" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16288" g_stop="16659" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="949" r_length="373" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E736780" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14845" e_stop="14919"/>
          <exon e_start="15600" e_stop="16100"/>
          <exon e_start="16288" e_stop="16659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAGGTTTGTCTTGTGCTGCGAGCTGTATAAATTAATTAACTCTAGTGCTCTCTTTACGTCTTAACTAGTACTCCATTTCATAGTTGCAATAGTAATATTGAGATACTTATAATTTATGTTTGTTCAAGTATATATTGTACTTTTATATATTGTACTTTCATCTATGTTCTTTTCCAATCTCTACTCTCAGGAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTAT-AAACTTTAAATTTTGAATCCGACT</genome_strand>
        <mrna_strand>CCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG...........................................................................................................................................................................................GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGAAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTATTTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAAGATTCTATAAAACTTTAATTTTGAAATCCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738423" ref_strand="+" ref_description="SGN-E738423 [LC13CD11]">
      <seq>cctagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcacaacataactgctctatgctctcaccaacttccaactgcctactttagcaaacttgaaagtttggatgtatcgacttgtggaaaattgagaaacttgatgtctccattactggctagaggtgttttgaatctccgaatactaaagatacaagactgtcaatcaatggaagaagtcatcacagaagaggaacaaggagaaaatatgactaatgggcccttatttccccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaggtgaaagtagatgatctgaatacatggatacaacagatgttcaattctaaggaagaagatgtaagtgatgactgtgaatatgaaaaagacgttactgacggtaatgaatctgaagaagatttaagtgatggctgtaaatctgaacaagatgtaagtgatggcagtgaatctgaatcttcagtccagtgaaggcagaagctagcatgttgtcgatgaatccaaagctatgaaggtaataagttctcgatggaatagtttaagtgtgacaagtgaagctcgaagacctatatatgctcgttatgggagcaaagatgtatacctgtaactttattagtaatatctagtaattccttgactgtgaacacaagtattatttttgatatcactgtaggattctataaatttaaattttgaatccgactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="14545" stop="16962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14845" g_stop="14919" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15600" g_stop="16100" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="576" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16288" g_stop="16659" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="947" r_length="371" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="948" polyA_stop="957"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E738423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>948</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14845" e_stop="14919"/>
          <exon e_start="15600" e_stop="16100"/>
          <exon e_start="16288" e_stop="16659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAGGTTTGTCTTGTGCTGCGAGCTGTATAAATTAATTAACTCTAGTGCTCTCTTTACGTCTTAACTAGTACTCCATTTCATAGTTGCAATAGTAATATTGAGATACTTATAATTTATGTTTGTTCAAGTATATATTGTACTTTTATATATTGTACTTTCATCTATGTTCTTTTCCAATCTCTACTCTCAGGAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACT</genome_strand>
        <mrna_strand>CCTAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG...........................................................................................................................................................................................GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGGAGCAAAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAA-TTTAAATTTTGAATCCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371298" ref_strand="+" ref_description="SGN-E371298 [TUS-27-K15](-)">
      <seq>aaagatacaagactgtcaatcaatggaagaagtcatcacagaagaggaacaaggagaaaatatgactaatgggcccttatttccccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaggtgaaagtagatgatctgaatacatggatacaacagatgttcaattctaaggaagaagatgtaagtgatgactgtgaatatgaaaaagacgttactgacggtaatgaatctgaagaagatttaagtgatggctgtaaatctgaacaagatgtaagtgatggcagtgaatctgaatcttcagtccagtgaaggcagaagctagcatgttgtcgatgaatccaaagctatgaaggtaataagttctcgatggaatagtttaagtgtgacaagtgaagctcgaagacctatatatgctcgttatggaagcagagatgtatacctgtaactttattagtaatatctagtaattccttgactgtgaacacaagtattatttttgatatcactgtaggattctataaactttaaattttgaatccgactatatgttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="15485" stop="16968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15785" g_stop="16100" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16288" g_stop="16666" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="695" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="707"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E371298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15785" e_stop="16100"/>
          <exon e_start="16288" e_stop="16666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAGGTTTGTCTTGTGCTGCGAGCTGTATAAATTAATTAACTCTAGTGCTCTCTTTACGTCTTAACTAGTACTCCATTTCATAGTTGCAATAGTAATATTGAGATACTTATAATTTATGTTTGTTCAAGTATATATTGTACTTTTATATATTGTACTTTCATCTATGTTCTTTTCCAATCTCTACTCTCAGGAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTT</genome_strand>
        <mrna_strand>AAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG...........................................................................................................................................................................................GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349225" ref_strand="+" ref_description="SGN-E349225 [cTOS-2-B9]">
      <seq>ccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaggtgaaagtagatgatctgaatacatggatacaacagatgttcaattctaaggaagaagatgtaagtgatgactgtgaatatgaaaaagacgttactgacggtaatgaatctgaagaagatttaagtgatggctgtaaatctgaacaagatgtaagtgatggcagtgaatctgaatcttcagtccagtgaaggcagaagctagcatgttgtcgatgaatccaaagctatgaaggtaataagttctcgatggaatagtttaagtgtgacaagtgaagctcgaagacctatatatgctcgttatggaagcagagatgtatacctgtaactntattagtaatatctagtaattccttgactgtgaacacaagtattatttttgatatcactgtaggattctataaactttaaattttgaatccgactatatgttgntcattcttctttcatttatatttaacagctaatatgttgctttattttctcatgtaatcttgcattctgtgtcgttttgaaagatttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="15569" stop="17063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15869" g_stop="16100" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16288" g_stop="16763" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="708" r_length="476" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E349225" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15869" e_stop="16100"/>
          <exon e_start="16288" e_stop="16763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAGGTTTGTCTTGTGCTGCGAGCTGTATAAATTAATTAACTCTAGTGCTCTCTTTACGTCTTAACTAGTACTCCATTTCATAGTTGCAATAGTAATATTGAGATACTTATAATTTATGTTTGTTCAAGTATATATTGTACTTTTATATATTGTACTTTCATCTATGTTCTTTTCCAATCTCTACTCTCAGGAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAAA</genome_strand>
        <mrna_strand>CCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG...........................................................................................................................................................................................GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTNTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGNTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355209" ref_strand="+" ref_description="SGN-E355209 [cTOS-18-N20]">
      <seq>ccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaggtgaaagtagatgatctgaatacatggatacaacagatgttcaattctaaggaagaagatgtaagtgatgactgtgaatatgaaaaagacgttactgacggtaatgaatctgaagaagatttaagtgatggctgtaaatctgaacaagatgtaagtgatggcagtgaatctgaatcttcagtccagtgaaggcagaagctagcatgttgtcgatgaatccaaagctatgaaggtaataagttctcgatggaatagtttaagtgtgacaagtgaagctcgaagacctatatatgctcgttatggaagcagagatgtatacctgtaactttattagtaatatctagtaattccttgactgtgaacacaagtattatttttgatatcactgtaggattctataaactttaaattttgaatccgactatatgttgttcattcttctttcatttatatttaacagctaatatgttgctttattttctcatgtaatcttgcattctgtgtcgttttgaaagatttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="15569" stop="17062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15869" g_stop="16100" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16288" g_stop="16762" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="707" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E355209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15869" e_stop="16100"/>
          <exon e_start="16288" e_stop="16762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAGGTTTGTCTTGTGCTGCGAGCTGTATAAATTAATTAACTCTAGTGCTCTCTTTACGTCTTAACTAGTACTCCATTTCATAGTTGCAATAGTAATATTGAGATACTTATAATTTATGTTTGTTCAAGTATATATTGTACTTTTATATATTGTACTTTCATCTATGTTCTTTTCCAATCTCTACTCTCAGGAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAA</genome_strand>
        <mrna_strand>CCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG...........................................................................................................................................................................................GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460472" ref_strand="+" ref_description="SGN-E460472 [cPRO-31-K18]">
      <seq>gccgcttgcaattgttacagttgcaggagcactaaagcttaaaactaagccttcgtgggaggatgcccttaaacaattatgcaatgcagaaacaagaaatatccctggagtgcacacgaaggtgtatagacctctgaggctaagctatgatcacttggaaagtgatgaagccaggtatatctttttgctttgttctttgttcgaggaagatagtgatatttcgaccgaagaattacttagatatggaatggggcttcgcatctttttggaagttaaaaatatagaaggagcaagaaatagagtgtgtcatctgttagaaacactgaaagatcgtttcttgttatcccaaggttcaaacagaaattatgtcaaaatgcatgatgtggttcgtgacgtggctatatatattgcgtctgagggaaagcatatatttatggtaagtcatgatgtgaactcagaagagttcccaagaaaagacttttacgagcaatatagtcacgtgtccattgttgcaaataaatttgatgagcatcttagtccaaaaatttgcccaaatttgaagcttctaatgttgaaactctattgtaaagagccaatccaattacaagacaatttttttgatgggatgagtaaactcaatgtcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="18556" stop="19803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18856" g_stop="19503" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E460472" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18856" e_stop="19503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTTGCAATTGTTACAGTTGCAGGAGCACTAAAGCTTAAAACTAAGCCTTCGTGGGAGGATGCCCTCAAACAATTACGCAATGCAGAAACAAGAAATATCCCTGATGTGCACACAAAGGTGTATAGACCTCTGAGGCTAAGCTATGATCACTTGGAAAGTGATGAAGCCAGGTACATCTTTTTGCTTTGTTCTTTGTTTGAGGAAGATAGTGATATTTCGACTGAAGAATTACTTAGATATGGAATGGGGCTTGGCATCTTTTTGGAAATTAAAAATATAGAAGGAGCAAGAAATAGAGTGTGTCATCTGTTAGAAACACTGAAAGATCGTTTCTTGTTATCCCAAGGTTCAAACAGAAATTCTGTCAAAATGCATGATGTAGTTCGTGATGTGGCTATATATATTGCGTCTGAGGGAAAGCATATATTTATGGTAAGTCATGATGTGAACTCAGAAGAGTTCCCAAGAAAAGATTCTTACGAGCAATATAGTCACGTCTCAATTGTTGCAAATAAATTTGATGAGCATCCTAGCCCAATAATTGGCCCAAATTTGAAGCTTCTAATGTTGAAACTCTATTTTAAAGAGCCAATCAAATTACAAGACGATTTTTTTGATGGGATGAGTAAACTCAATGTCTTAAG</genome_strand>
        <mrna_strand>GCCGCTTGCAATTGTTACAGTTGCAGGAGCACTAAAGCTTAAAACTAAGCCTTCGTGGGAGGATGCCCTTAAACAATTATGCAATGCAGAAACAAGAAATATCCCTGGAGTGCACACGAAGGTGTATAGACCTCTGAGGCTAAGCTATGATCACTTGGAAAGTGATGAAGCCAGGTATATCTTTTTGCTTTGTTCTTTGTTCGAGGAAGATAGTGATATTTCGACCGAAGAATTACTTAGATATGGAATGGGGCTTCGCATCTTTTTGGAAGTTAAAAATATAGAAGGAGCAAGAAATAGAGTGTGTCATCTGTTAGAAACACTGAAAGATCGTTTCTTGTTATCCCAAGGTTCAAACAGAAATTATGTCAAAATGCATGATGTGGTTCGTGACGTGGCTATATATATTGCGTCTGAGGGAAAGCATATATTTATGGTAAGTCATGATGTGAACTCAGAAGAGTTCCCAAGAAAAGACTTTTACGAGCAATATAGTCACGTGTCCATTGTTGCAAATAAATTTGATGAGCATCTTAGTCCAAAAATTTGCCCAAATTTGAAGCTTCTAATGTTGAAACTCTATTGTAAAGAGCCAATCCAATTACAAGACAATTTTTTTGATGGGATGAGTAAACTCAATGTCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436261" ref_strand="+" ref_description="SGN-E436261 [STM-62-B20]">
      <seq>gccgcttgcaattgttacagttgcaggagcactaaagcttaaaactaagccttcgtgggaggatgcccttaaacaattatgcaatgcagaaacaagaaatatccctggagtgcacacgaaggtgtatagacctctgaggctaagctatgatcacttggaaagtgatgaagccaggtatatctttttgctttgttctttgttcgaggaagatagtgatatttcgaccgaagaattacttagatatggaatggggcttcgcatctttttggaagttaaaaatatagaaggagcaagaaatagagtgtgtcatctgttagaaacactgaaagatcgtttcttgttatcccaaagttcaaacagaaattatgtcaaaatgcatgatgtggttcgtgacgtggctatatatattgcgtctgagggaaagcatatatttatggtaagtcatgatgtgaactcagaagagttcccaagaaaagacttttacgagccatatagtcacgtgtccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="18556" stop="19663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18856" g_stop="19363" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E436261" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18856" e_stop="19363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTTGCAATTGTTACAGTTGCAGGAGCACTAAAGCTTAAAACTAAGCCTTCGTGGGAGGATGCCCTCAAACAATTACGCAATGCAGAAACAAGAAATATCCCTGATGTGCACACAAAGGTGTATAGACCTCTGAGGCTAAGCTATGATCACTTGGAAAGTGATGAAGCCAGGTACATCTTTTTGCTTTGTTCTTTGTTTGAGGAAGATAGTGATATTTCGACTGAAGAATTACTTAGATATGGAATGGGGCTTGGCATCTTTTTGGAAATTAAAAATATAGAAGGAGCAAGAAATAGAGTGTGTCATCTGTTAGAAACACTGAAAGATCGTTTCTTGTTATCCCAAGGTTCAAACAGAAATTCTGTCAAAATGCATGATGTAGTTCGTGATGTGGCTATATATATTGCGTCTGAGGGAAAGCATATATTTATGGTAAGTCATGATGTGAACTCAGAAGAGTTCCCAAGAAAAGATTCTTACGAGCAATATAGTCACGTCTCAATT</genome_strand>
        <mrna_strand>GCCGCTTGCAATTGTTACAGTTGCAGGAGCACTAAAGCTTAAAACTAAGCCTTCGTGGGAGGATGCCCTTAAACAATTATGCAATGCAGAAACAAGAAATATCCCTGGAGTGCACACGAAGGTGTATAGACCTCTGAGGCTAAGCTATGATCACTTGGAAAGTGATGAAGCCAGGTATATCTTTTTGCTTTGTTCTTTGTTCGAGGAAGATAGTGATATTTCGACCGAAGAATTACTTAGATATGGAATGGGGCTTCGCATCTTTTTGGAAGTTAAAAATATAGAAGGAGCAAGAAATAGAGTGTGTCATCTGTTAGAAACACTGAAAGATCGTTTCTTGTTATCCCAAAGTTCAAACAGAAATTATGTCAAAATGCATGATGTGGTTCGTGACGTGGCTATATATATTGCGTCTGAGGGAAAGCATATATTTATGGTAAGTCATGATGTGAACTCAGAAGAGTTCCCAAGAAAAGACTTTTACGAGCCATATAGTCACGTGTCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261966" ref_strand="+" ref_description="SGN-E261966 [cLEG-58-I2]">
      <seq>tttggccttttccagtatccattcagaggttgtcgaatctgaggacgttgtgtctgagtaatttaaggttggaggacatatccattattggtcaacttgtcactttagagattcttagcataagagattctcagttagaggagctgcccaaggagataggtaaattgactaatctaatcatgttagagttgcggaatgagaaaaaaccactggaaatgatttcaccaggggtcttatcaagactagttcgattggaggaactacatataatgaatgtaagaaattgtagttactccaccttgaaggaactagaatccttatcgagattgactgcactgacattaagtgaatgttccggagatgtgatctacagtaacatgggccttacctccaagttgacacagtttgcaattacagtgggtaaagcttacagagcgactccaagcatggatgattacgacaagaatatttctttagaggtcaccgagactgccccattaggtgattggatccgccacctgttgagcaagagcgaacttgtacattcaaccggagagggaaccaagaacgtgctggccgagttgcagctggatgaatttcagaatgtgaaatatctctgcctngaatcttttgattcattgacacatatccaatgtcagaataatgtttcatttcccaaactcgaaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="19227" stop="20518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19527" g_stop="20218" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E261966" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19527" e_stop="20218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTTTTCCAGTATCCATTCAGAGGTTGTCGAATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGATCCGCCACCTGTTGAGCAAGAGCGAACTTGTACATTCAACCGGAGAGGGAACCAAGAACGTGCTGGCCGAGTTGCAGCTGGATGAATTTCAGAATGTGAAATATCTCTGCCTGAAATCTTTTGATTCATTGACACATATCCAATGTCAGAATAATGTTTCATTTCCCAAACTCGAAAAACTG</genome_strand>
        <mrna_strand>TTTGGCCTTTTCCAGTATCCATTCAGAGGTTGTCGAATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGATCCGCCACCTGTTGAGCAAGAGCGAACTTGTACATTCAACCGGAGAGGGAACCAAGAACGTGCTGGCCGAGTTGCAGCTGGATGAATTTCAGAATGTGAAATATCTCTGCCTNGAATCTTTTGATTCATTGACACATATCCAATGTCAGAATAATGTTTCATTTCCCAAACTCGAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551128" ref_strand="+" ref_description="SGN-E551128 [TUS-55-G17]">
      <seq>aatctgaggacgttgtgtctgagtaatttaaggttggaggacatatcccttattggtcaacttgtcactttagagattcttagcataagagattctcagttagaggagctgcccaaggagataggtaaattgactaatctaatcatgttagagttgcggaatgagaaaaaaccactggaaatgatttccccaggggtcttatcaagactagttcgattggaggaactacatataatgaatgtaagaaattgtagttactccaccttgaaggaactagaatccttatcgagattgactgcactgacattaagtgaatgttccggagatgtgatctacagtaacatgggccttacctccaagttgacacagtttgcaattacagtgggtaaagcttacagagcgactccaagcatggatgattacgaccagaatatttctttagaggtcaccgagactgccccattaggtgattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="19262" stop="20337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19562" g_stop="20037" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E551128" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19562" e_stop="20037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGAT</genome_strand>
        <mrna_strand>AATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCCTTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCCCCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACCAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688936" ref_strand="+" ref_description="SGN-E688936 [t3_tus_55_G17]">
      <seq>aatctgaggacgttgtgtctgagtaatttaaggttggaggacatatcccttattggtcaacttgtcactttagagattcttagcataagagattctcagttagaggagctgcccaaggagataggtaaattgactaatctaatcatgttagagttgcggaatgagaaaaaaccactggaaatgatttccccaggggtcttatcaagactagttcgattggaggaactacatataatgaatgtaagaaattgtagttactccaccttgaaggaactagaatccttatcgagattgactgcactgacattaagtgaatgttccggagatgtgatctacagtaacatgggccttacctccaagttgacacagtttgcaattacagtgggtaaagcttacagagcgactccaagcatggatgattacgaccagaatatttctttagaggtcaccgagactgccccattaggtgattggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="19262" stop="20337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19562" g_stop="20037" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E688936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19562" e_stop="20037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGAT</genome_strand>
        <mrna_strand>AATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCCTTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCCCCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACCAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618483" ref_strand="+" ref_description="SGN-E618483 [69161]">
      <seq>aaactttataaattcactttcaaggccctacattttacaattgatttcaaataagtccatctttctccggcgaactcctcgggatctcctttccttcctccgacgtaatccagccgtaagttccgccatttccattgtacatttcctgctcttttttcagataaaaatcctaattcctcttatgtattccattttgcttcacatttcgtaaaagctacgaatttttgggggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="25599" stop="50066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25899" g_stop="26133" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26134" i_stop="26847" i_length="714">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26848" g_stop="26880" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="268" r_length="33" r_score="0.606"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E618483" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25899" e_stop="26133"/>
          <exon e_start="26848" e_stop="26880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTATAAAATTCACTTTCAAGGCCCTACATTTTACAATTGATTTCAAATAAGTCCATCATTCTCCGGCGAACTCCTCGGGATCTCCTTTCCTTCCTCCGACGTAATCCAGCCGTAAGTTCCGCCATTTCTGTTCTACATTTTCTGCTC-TTTTTCAGATAAAAACCCTAACTCCTCTTATGTATTTAATTTTGCTTCACATTTCGTAAAAACTATGAATTTTTGGAGGTTTAGTTTTTGTTCTCTCCGTTTCGAGTATTCATATATCGTAATCTGGTTATTTTTTGCTTCTATAGCTACGTAATGTATTGTGATCTTTCTAATAATTCAAACTGCTAATTAGTCGAGTTAAAATATTGCTTATAAAATTCACTAATTTTGAGAATTAATTTTTGTCTGGTAAGTAGTGATTTGTTTGTCCACTAAGTTTATTAAATTAAATGAAAAACTCCATTTTTTCCTATTTGAGCTAATTATTTTGGCATTATTTGGCTAATGATGTTTATTATAATAGTAACATACTATCAGAACTTTCAAGCAGTCAAATTTATTTAATTATTCAGATTTTAAGGTTTGATGTGATCTGTTTTTCTATTTTTTCAGATGAAAATGACTTTTTTTCAAGTAAATTTAATGTGCAGTACAATATAATTCATGTTTATAATAGTGTAGAACCTATTTTGACTAGAAAGTGAAAACATATTCATATATATTTAGATATTAATAAAATGAACTATCTGATATCAAATGGTAAACAATTTTGGTTTTTTATTCCTACTTTGAATTAGTCTTCCAACATTCTCCCATTATTCAAAGTTATATTTTCAATTGTTGAATGCACTAGTCACCAAAATTTTTATGCACTTATCACCAAACTTCAATTGTTGACACACTTAGTCTCCAACGCTCAATTGTTGATGCACTTTGTAACCAACTCGTAATTGTTGAAAATAAAAGCATAATACTGAATGAAATGTAAA</genome_strand>
        <mrna_strand>AAACTTTAT-AAATTCACTTTCAAGGCCCTACATTTTACAATTGATTTCAAATAAGTCCATCTTTCTCCGGCGAACTCCTCGGGATCTCCTTTCCTTCCTCCGACGTAATCCAGCCGTAAGTTCCGCCATTTCCATTGTACATTTCCTGCTCTTTTTTCAGATAAAAATCCTAATTCCTCTTATGTATTCCATTTTGCTTCACATTTCGTAAAAGCTACGAATTTTTGGGGGTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213783" ref_strand="+" ref_description="SGN-E213783 [cLEC-76-M5]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="29085" stop="28194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28785" g_stop="28494" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E213783" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28785" e_stop="28494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGACGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCTGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207313" ref_strand="+" ref_description="SGN-E207313 [cLEC-30-L1]">
      <seq>gcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaagtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgccggctaagggcgttgacaagacaacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="29084" stop="28310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28784" g_stop="28610" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E207313" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28784" e_stop="28610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGACGTTGGCAAGACAGCATGTTGAC</genome_strand>
        <mrna_strand>GCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAAGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCCGGCTAAGGGCGTTGACAAGACAACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559287" ref_strand="+" ref_description="SGN-E559287 [18761]">
      <seq>tgatagcatctttacagaaagtaagtttcttctagctgattccttgctacagttggcacgggctctcatatgggctgcaggaagatctcagaagggtagtagttctcctgaagatgaagacactgcagtattctgcttggaactgctgattgcgatcaccttgaacaacagagatagaattagacttctttggcagggagtttatgagcatattgctagtattgtccactcaacagtaatgccttgtgctttgattgagaaagctatatttggactccttcgcatctgcctgaggttgcttccctataaagagaacttagctgatgaacttttgagatcactacaacttgttctcaagcttgacgcccgggttgctgatgcatactgtgagcagattacacaggaagtcagtcggctggttaaagcaaatgccacgcacattcgttctcaaatgggatggcgaacgattactcttttactttctataacagcaagacatccagaagcttctgaagcaggattcgatgccctggttttcattatgtctgatggagcccatttgtccccagctaattatgttctttgcatcgatgcagctagaaattttgcagagtctcgtgttggacctgcggatagacctgctcgcgcggtggatcttatggcaggttcagttgctaggtttagcatgctggtccaaagatactanggaggctcttggcagagactgaagctgtgaaagttgtcccaagatatcggagacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="33129" stop="34488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33429" g_stop="34188" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E559287" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33429" e_stop="34188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGCATCTTTACAGAAAGTAAGTTTCTTCTAGCTGATTCCTTGCTACAGTTGGCACGGGCTCTCATATGGGCTGCAGGAAGACCTCAGAAGGGTAGTAGTTCTCCTGAAGATGAAGACACTGCAGTATTCTGCTTGGAACTGCTGATTGCAATCACCTTGAACAACAGAGATAGAATTAGACTTCTTTGGCAGGGAGTTTATGAGCATATTGCTAGTATTGTCCACTCAACAGTAATGCCTTGTGCTTTGATTGAGAAAGCTATATTTGGACTCCTTCGCATCTGCCTGAGGTTGCTTCCCTATAAAGAGAACTTAGCTGATGAACTTTTGAGATCACTACAACTTGTTCTCAAGCTTGATGCCCGGGTTGCTGATGCATACTGTGAGCAGATTACACAGGAAGTCAGTCGGCTTGTTAAAGCAAATGCCACACACATTCGTTCTCAAATGGGATGGCGAACAATTACTCTTTTACTTTCTATCACAGCAAGACATCCAGAAGCTTCTGAAGCAGGATTCAATGCCCTGGTTTTCATTATGTCTGATGGAGCCCATTTGTCCCCAGCTAATTATGTTCTTTGCATCGATGCAGCTAGAAATTTTGCAGAGTCTCGTGTTGGACCTGCGGATAGACCTGCTCGTGCAGTGGATCTTATGGCAGGTTCAGTTGCTA-GTTTAGCATGCTGGTCCAAAGATACTAGGGAAGCTC-TGGCAGAGACTGAAGCTGTG-AAGTTGTCCCAAGATATCGGAGACATG</genome_strand>
        <mrna_strand>TGATAGCATCTTTACAGAAAGTAAGTTTCTTCTAGCTGATTCCTTGCTACAGTTGGCACGGGCTCTCATATGGGCTGCAGGAAGATCTCAGAAGGGTAGTAGTTCTCCTGAAGATGAAGACACTGCAGTATTCTGCTTGGAACTGCTGATTGCGATCACCTTGAACAACAGAGATAGAATTAGACTTCTTTGGCAGGGAGTTTATGAGCATATTGCTAGTATTGTCCACTCAACAGTAATGCCTTGTGCTTTGATTGAGAAAGCTATATTTGGACTCCTTCGCATCTGCCTGAGGTTGCTTCCCTATAAAGAGAACTTAGCTGATGAACTTTTGAGATCACTACAACTTGTTCTCAAGCTTGACGCCCGGGTTGCTGATGCATACTGTGAGCAGATTACACAGGAAGTCAGTCGGCTGGTTAAAGCAAATGCCACGCACATTCGTTCTCAAATGGGATGGCGAACGATTACTCTTTTACTTTCTATAACAGCAAGACATCCAGAAGCTTCTGAAGCAGGATTCGATGCCCTGGTTTTCATTATGTCTGATGGAGCCCATTTGTCCCCAGCTAATTATGTTCTTTGCATCGATGCAGCTAGAAATTTTGCAGAGTCTCGTGTTGGACCTGCGGATAGACCTGCTCGCGCGGTGGATCTTATGGCAGGTTCAGTTGCTAGGTTTAGCATGCTGGTCCAAAGATACTANGGAGGCTCTTGGCAGAGACTGAAGCTGTGAAAGTTGTCCCAAGATATCGGAGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559315" ref_strand="+" ref_description="SGN-E559315 [18793]">
      <seq>tgatagcatctttacagaagtaagtttcttctagctgattccttgctacagttggcacgggctctcatatgggctgcaggaagatctcagaagggtagtagttctcctgaagatgaagacactgcagtattctgcttggaactgctgattgcgatcaccttgaacaacagagatagaattagacttctttggcagggagtttatgagcatattgctagtattgtccactcaacagtaatgccttgtgctttgattgagaaagctatatttggactccttcgcatctgcctgaggttgcttccctataaagagaacttagctgatgaacttttgagatcactacaacttgttctcaagcttgacgcccgggttgctgatgcatactgtgagcagattacacaggaagtcagtcggctggttaaagcaaatgccacgcacattcgttctcaaatgggatggcgaacgattactcttttactttctataacagcaagacatccagaagcttctgaagcaggattcgatgccctggttttcattatgtctgatggagcccatttgtccccagctaattatgttctttgcatcgatgcagctagaaattttgcagagtctcgtgttggacctgcggatagacctgctcgcgcggtggatcttatggcaggttcagttgctagtttagcatgctggtccaaaggatactaggggagggctctggcagagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="33129" stop="34442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33429" g_stop="34151" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E559315" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33429" e_stop="34151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGCATCTTTACAGAAAGTAAGTTTCTTCTAGCTGATTCCTTGCTACAGTTGGCACGGGCTCTCATATGGGCTGCAGGAAGACCTCAGAAGGGTAGTAGTTCTCCTGAAGATGAAGACACTGCAGTATTCTGCTTGGAACTGCTGATTGCAATCACCTTGAACAACAGAGATAGAATTAGACTTCTTTGGCAGGGAGTTTATGAGCATATTGCTAGTATTGTCCACTCAACAGTAATGCCTTGTGCTTTGATTGAGAAAGCTATATTTGGACTCCTTCGCATCTGCCTGAGGTTGCTTCCCTATAAAGAGAACTTAGCTGATGAACTTTTGAGATCACTACAACTTGTTCTCAAGCTTGATGCCCGGGTTGCTGATGCATACTGTGAGCAGATTACACAGGAAGTCAGTCGGCTTGTTAAAGCAAATGCCACACACATTCGTTCTCAAATGGGATGGCGAACAATTACTCTTTTACTTTCTATCACAGCAAGACATCCAGAAGCTTCTGAAGCAGGATTCAATGCCCTGGTTTTCATTATGTCTGATGGAGCCCATTTGTCCCCAGCTAATTATGTTCTTTGCATCGATGCAGCTAGAAATTTTGCAGAGTCTCGTGTTGGACCTGCGGATAGACCTGCTCGTGCAGTGGATCTTATGGCAGGTTCAGTTGCTAGTTTAGCATGCTGGTCCAAA-GATACTA-GGGA-AGCTCTGGCAGAGAC</genome_strand>
        <mrna_strand>TGATAGCATCTTTACAG-AAGTAAGTTTCTTCTAGCTGATTCCTTGCTACAGTTGGCACGGGCTCTCATATGGGCTGCAGGAAGATCTCAGAAGGGTAGTAGTTCTCCTGAAGATGAAGACACTGCAGTATTCTGCTTGGAACTGCTGATTGCGATCACCTTGAACAACAGAGATAGAATTAGACTTCTTTGGCAGGGAGTTTATGAGCATATTGCTAGTATTGTCCACTCAACAGTAATGCCTTGTGCTTTGATTGAGAAAGCTATATTTGGACTCCTTCGCATCTGCCTGAGGTTGCTTCCCTATAAAGAGAACTTAGCTGATGAACTTTTGAGATCACTACAACTTGTTCTCAAGCTTGACGCCCGGGTTGCTGATGCATACTGTGAGCAGATTACACAGGAAGTCAGTCGGCTGGTTAAAGCAAATGCCACGCACATTCGTTCTCAAATGGGATGGCGAACGATTACTCTTTTACTTTCTATAACAGCAAGACATCCAGAAGCTTCTGAAGCAGGATTCGATGCCCTGGTTTTCATTATGTCTGATGGAGCCCATTTGTCCCCAGCTAATTATGTTCTTTGCATCGATGCAGCTAGAAATTTTGCAGAGTCTCGTGTTGGACCTGCGGATAGACCTGCTCGCGCGGTGGATCTTATGGCAGGTTCAGTTGCTAGTTTAGCATGCTGGTCCAAAGGATACTAGGGGAGGGCTCTGGCAGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614853" ref_strand="-" ref_description="SGN-E614853 [64645]">
      <seq>atctggtcgcacaaaatgcatagctgaagatatcaagagtcattccatgactgttggcaaatatcatattgtcaatcccaatgaaccacatcctttgccagatactcacaaagtcaccctcagggtgacatctacgcatgggaatacctttcactatgcggataatgttcatgaggggcattttgcttttgagacaacagaagctggggattatatggcttgcttctatgctgctgatcacaagccccccgttactatgactattaatttcgactggaagagtggtgtagctgctaaggactggactaatgttgccaagaaaggctcagttgaccttatggaattagaactgaagaagatgtatgaacatgttaaaaacatccatgatgagatgttttatctacgtgaaagggaggaagaaatgcaagaacttaacagatcaaccaactccaaaatggcttggatgactggactgtcaatctgtgtatgcttatctgtagcaggattgcaattgtggcatttgaaaacctttttcgaaaagaagaagctaatctaatgttattctgatattttcactattctcacgttcgagtagaattttttatagacaacacagtagttagaagaaagttatgtttcatgtacaatgtgatagaaaattgtattctgaaatgcatgtgttactctcaaaaaaaaaaaaaaaaaactcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="38272" stop="35074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37972" g_stop="37849" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37848" i_stop="36624" i_length="1225">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36623" g_stop="36414" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="334" r_length="210" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36413" i_stop="35799" i_length="615">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35798" g_stop="35722" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="411" r_length="77" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35721" i_stop="35635" i_length="87">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35634" g_stop="35380" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="665" r_length="254" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="707"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E614853" ref_strand="-">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614853" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37972" e_stop="37849"/>
          <exon e_start="36623" e_stop="36414"/>
          <exon e_start="35798" e_stop="35722"/>
          <exon e_start="35634" e_stop="35380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGTCGTACAAAATGCATAGCTGAAGATATCAAGAGTCATTCCATGACTGTTGGCAAATATCATATTGTCAATCCCAATGAATCACATCCTTTGCCAGATACTCACAAAGTCACTCTCAGGGTAAATTTTTTTTTTTTTTAGATATTTATATGATTTTGATTGATATTTGGGATATGAAGCAATTGGGTGTGTTTGATTTGATTTTTCTAGGGTAAAAAAGATGAGTTTTTGAACTTTTGGGTAAGGGTGTATGAGCTTTACTCGAATTAACAAGTATTGTGGTGGAGTGGTAGATGCTCGTTAATCCTTAATAAGAGGTATCAGTTTTGAGTCTTAGAGCTTGTTTTGATTGGTTTATTTTAGGTGTTTTTAAGCTAAAATAGCTTTTGAACACTTTTGTAGTGTTTGAGTAAGATTGTAAAGTGAGTTTAAGGACTTGTTTTTTAAGACCAAAATAACAAAGAAAAGAAGCTAAAAGTCACAAGGGAGGATGCACTCTTCAAAAATGTCAATGTGTGTCGGATTCTCCAGAAGTAGTGTATTTTTTGGAGAATTCGACGTGGTGTGGCATCGAAAGTGAAGAGTCCATGCAAAATTGGTTATAAGTTAGAAAACTTATGACTTTTAGCTTATAAGTCCGATCAAACAAACTCTTCTTATCGGGTACAAAGTTGCTTTTGTTAAGAAGCATTTTGCCCTCAATATGGTCTTCTACAACAACCATATTAATATGCCTTACTTCCAAATTAGTTGGGATAGGTTATATGAATATGTTAACCTTCCCATATTACTACCACGTTACTTAACATATTTGTCCCAAATTACTCGTCAATTCACAAAACAAGGATAGAATTAGTTAAAATTCCTCTTAGAAGTCATCTTTGTTTCTCTCTTATATTGGGATTGTGGCCAAAAATGTGAGCAGGCAGGGTTAGCTTCTGAACCGTTGAGTTGGAACTTTTGGTTAGTTAATATCTGCTTGATTGATTTGCATTTTGTCTGTATCAACCTTACCCCATTTATTTGTTTGGGAATGGGATTGGCAATGTGAGCTCACACAGTATACGGAACTCAATTAGGTGGAGTTAGCTTCTAATACTTGAGTTTGGATATTTTGGCTAGAAAAATTCTGTGTAGTAAGAGTTTTCTTTTCTCTAAAGCTATTTGGACGCACGAGTTTAAGGATACATGTGATCTAAGGATTTTCGTAGGTTCATAAATGAAGAGTTCTGCTCCTCATGCAGAAAACAAGAGTTTATTTTTGTGTATCGTGTGTTATGTTGATCAGACTAATCAGTTTCCTCTGTTCAAAAAGATGAAGTTTTGTATGGTATGTGTGAATTAGGTGACATCTACACATGGGAATACCTTTCACTATGCTGATAATGTTCATGAGGGGCATTTTGCTTTTGAGACAACAGAAGCTGGGGATTATATGGCTTGCTTCTATGCTGCTGATCACAAGCCTCCCGTTACTATGACTATTAATTTCGACTGGAAGAGTGGTGTAGCTGCTAAGGACTGGACAAATGTTGCCAAGAAAGGCTCTATTGATGTAAGCCTTCTTTCTTCTTCATGATGGCTTATCTCAAATCACACGTACATGGGTGTCCCTATCTATTCGTCTTGAGTCACACTGGCTGTTTCACACATATTGACTCGTTCCTATTCTGTGCCTCCATGACTCCCTATTTGTTTCATCAAACTAATGTTCAGATGAGAATGCATAACTCTTAGAGCGTTTCACTTTAACAATATGAAAGGAGCACTTATTGAATAACTTTTAAATGTTCATGAACGTCTGATCTGCGACTATATTAAAGAAGCTTCTAAATTGCACTTAAGCAGCCTCAAAGACTGCAGCTTTCTGGCTCAGCCTAACAATTTGGCCGTTATATATGAATTTTAGTTGAATATAATTCAATTAGAGCAGAATATACTGCATTTTATTCTATTCTTGTTTGAATACTCAGGTTCTTAACTTGGTAGGTACATTTGATCTGCAGTGTGATTATTGACCTTGAACTCATACCAAGTACTAGTAGTCTCTCCATGCTTTTTTTTTTTCTCTTGTATATGTGCCGTTTTGCCTGAGAAAAAAAAGAATGTTAAGAGAGGTTTTCTTTCGACTGCTTGATTTGTAATGCTTTTTCATTTGTTATCTTGTCAGCTTATGGAACTTGAACTGAAGAAGATGTATGAACATGTTCAAAGCATCCATGACGAGATGTTTTATCTACGTGAAAGGTGAGTTAACCTTATTCTTGTTATCAATCTCATCTTCGTGTATCTAAGCTAATGAAATAGAGTTTGAAATTTTTCGACATGTTACAGGGAGGAAGAAATGCAAGAACTTAACAGATCAACCAACTCCAAAATGGCCTGGATGACTGGACTGTCAATCTGTGTATGCTTATCTGTAGCAGGATTGCAATTGTGGCATTTGAAAACCTTTTTCGAAAAGAAGAAGCTAATCTAATGTTATTCTCATATTTTCACTACCCTCACGTTCGAGTAGAATCTTTTATAGACAACACAATAGTTAGAAGGAAAGTTGTGTTACATGTACTATGTGGTAGAAAATTGCAT</genome_strand>
        <mrna_strand>ATCTGGTCGCACAAAATGCATAGCTGAAGATATCAAGAGTCATTCCATGACTGTTGGCAAATATCATATTGTCAATCCCAATGAACCACATCCTTTGCCAGATACTCACAAAGTCACCCTCAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATCTACGCATGGGAATACCTTTCACTATGCGGATAATGTTCATGAGGGGCATTTTGCTTTTGAGACAACAGAAGCTGGGGATTATATGGCTTGCTTCTATGCTGCTGATCACAAGCCCCCCGTTACTATGACTATTAATTTCGACTGGAAGAGTGGTGTAGCTGCTAAGGACTGGACTAATGTTGCCAAGAAAGGCTCAGTTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGGAATTAGAACTGAAGAAGATGTATGAACATGTTAAAAACATCCATGATGAGATGTTTTATCTACGTGAAAG.......................................................................................GGAGGAAGAAATGCAAGAACTTAACAGATCAACCAACTCCAAAATGGCTTGGATGACTGGACTGTCAATCTGTGTATGCTTATCTGTAGCAGGATTGCAATTGTGGCATTTGAAAACCTTTTTCGAAAAGAAGAAGCTAATCTAATGTTATTCTGATATTTTCACTATTCTCACGTTCGAGTAGAATTTTTTATAGACAACACAGTAGTTAGAA-GAAAGTTATGTTTCATGTACAATGTGATAGAAAATTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343724" ref_strand="+" ref_description="SGN-E343724 [cTOF-20-B6]">
      <seq>ccaaaacccagcaaaaatggcgttaaggggaacgatgctacgaaccgccgggaagttcgccggcgtgaactccagtctccgacgatttgcccacatcacttcccgtccggcgcctctagatagcgtggttgatcggccgacggcgacatcaccgtcgttggttttacctgaaaatgagaataacagcaatatgtttccaaattcacctttcaattgggggtccatggagcttatggctgtccctaagaagaaggtttctcctcacaagagaggcataaggaatggaccaaaggctctaaaacccgttccagtgattattcgttgcaaggcttgtggtcgagtcaagttgccacatttcttttgttgcagtgggattaagcaaaaccctggtgaagagaacaattccaccggttgatcaaatcgaagggattattttcttcattttcaaatccctttctttgtagtagaatctccggttagaaactaggaaggctacgttatatcatgccggcattgtgtacaatagtgtagtcattgcagcatgtactcaaattctatatcagttgctttatttcacttcaattggtgacaagtaaatcttgccaaataataagaattggagactagaaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="44793" stop="40773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44493" g_stop="44241" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42932" g_stop="42859" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="327" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41379" g_stop="41073" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="634" r_length="307" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E343724" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44493" e_stop="44241"/>
          <exon e_start="42932" e_stop="42859"/>
          <exon e_start="41379" e_stop="41073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAGGTTTGATTTTCTTCTCCTCAAAGATCCTTCTTCTTAAAAGTGTTGCGAGTCTCAGCTCAGTTCAAGTTAAATTTAAGCTTAATTTATTGAATCGTTAAATGTATCCTTTAAGATAGATATATAACAGGAAGTATTGCATATTTGTTTGTGCATAGCAATTTCAGTCAATACAAGCTAGATGACTCGAGGAATATTCTGAAGATAGTTGCCACTTAGGATCACTGTGAACCTATCTTTCCCCTTGAGGATCAGTGATAGATTGGGAATATGATCCTTGTTGTAGAAAAGCAAAAAGCCATTGTCTCTGACTCTCTGTCGCTTGGATCCTCTAAAATGATGTTACACCGTGTCGGATCCTCTCAAAATGCAAGTTGTGTTCTAGCACGTATTAGTACGTTGAATAGCAACTAATAGATCATAAACATTTGGTTGGTTAAAAATAAGCAATGAAGCCATGATTAGAAGATGTTGAGGTGGGCATACTAGGAGTGATAAGATTGATAATAAGATATCTAGGAAAAGGTAGGAGTGTCCTCCGTGGTGGACAAGAGCATGAAAGCGAGACTAAGATAGTTTGGGCATATAAAATGACATGTTAAGATGCCCCCACGAGGACGTGTGAGAAGTTGACTGTGGTGGATTCAGGGAGAGATAGAGATAGGCCGAAGAAGTATTGGGGAGAGGCGATTAGACATGACATGATATATATTCTCCTTATTGGGGACATGACTAGATTATGGATTAGGATAGAAGGTTAATAGATAGTAAACGTTGTCTCACTTTCTCATGAGATAAGCTTGGTGGTAGTTTGGTGCAACGTACCTGTTTCTCCATACCGGTAGTAGTATCATTTACTCTTGTAGTTTCTTATCCAACAATTTTTGTTACTAGCTATTGTTTCTTTTGCTTTGGTTATTGCATTATTTGGCTGTTGTTATTGTTCCTTGTTTTCTGAATGCTATGTAATACTGTTCCTATTATTTGATGTCCTCTCTTTTCTTCTGTATTTTCCTTTTCATATTGCGATAATATGCATTACTTGAGTTGAGAGTCTTTTGGAAATAATCTCTCTATCATTTGTTTGTGCATGGATTTGCGCTTGTTTAGATATTCGTATTCGTAATGTTTTTCATTTGGTTGTGCATGTTGGCTTTGCGCTTATTTAGATTTTCCTATTCTATCACATGTATGCACAAAATATGTACATGTTCTGAACTTATGTGTGTTGGATGGTGCTCTGTAGAAGAGAGAGTGTTATAGAATTTACATCTGACTGTTTTTCTTAATGGATTGTGGTCAATAATGCAGGTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAAGTAAGAGCTCTTCCAGTAAAGTGTACAAGATGGATTTGAAAATTTTTAACTAATAAGCAAAATCCCTGGTGTCATTTAGCCTGTATACTCTTGAATTTCGAAAGCTGGTTTGAGGTTATTGGAAAAAAACACAACTTTACCTGCAATCTCTCAAAAATAATAGGAACCTACATCTCGAGAACATGTAAACCAAACAAAAGAGTAAAAGAGGAGTTTTACAATTTTTGAGTAAAAGAAAAATCAAATAAGAAGGAAATGATTATTTCGATAATAGCTTCACCTATTGAGCTTGCCTTGGATTGCTTAGCTTATTCGCCATTATTTGGTCAACATTTTGTCCTTTTTGGAAGTTCAAATTGTTGTTTTTCTTCCGTGTAGAGATAAATAAAAGGAAGCAATTGGTCTGAGAACTTGGACAGAGTCTGAAATATCAGATTGAGAAATTAAGTGCTTGCAAACTTTCAGTGCTGGCTTTGTTAATATCTCTTAACTAGGTTCTATAACTACATACTATTATTATAGTTGGTTTTATTTTAGTTGAGGCACTTCAGTTTTAAAATTTTGCTTCAAACTGGGGTGTTGGTAGTGGCAACGTTTCGCCTTATTGTTGAAGTATCAATTGCTGACAGCATTGGTCTTAACTGTGTTTTGAAGCAGATGATAGTTAAACGTTTCTCTTTACTCGTAAAAAAACAGAATTAATTGATAACTGTGAAGTGTGATCAAAAGGGAAACATCTACTCAGGAAAGATACAAACACGCTGTTAGAAAACCTCTGGTTGTGTTTCCAAATGTCAGGAAGATTTTATCTGCTATCCACATTTTCTTTTTCCAGGCATTTGCCTGTTTTGAATTTCGTTTATCTGCTGTTATCATTGACATCTCTCTTCCTCTATGAGCCCCCCCATGTTGTGCATTGTTAATTCATTCTTCTTTTCAGTTTTATATTCTTTATTTTACTGAAAAACATATGATGGCTCGTTTTAAAGCCAGTGCTCATATGTAGAGTAACATTGAGTCAGCTTTCAAGAGGGTCTATGTTTTTAGCATAATTTGGTTAAGAAAATGATTTGAAAGATGTTATCTTTTTAAGTGACTGAATGATCAGTATATATTGAACGTGCGGGTCTCTGAGGTTTGTCATGCAGTCAGTAATCCTTGCTTAAAAGCTAGAAGTCATGAGCAGGACTTTTAAAGCTGGTATTCCTCTCTGCGGGTGTGTTGGAGTTACTATTGATAATGATGCTTCTCTATAGTTGTTCAGAACGCCGATGATGATGCTTATCTAGGTTTACACTTTGGAAGACAAGGGCATGACATCTTACGTTTGCCTCCATCCGCTCTGCTCTCTTTGTCTTCTACATTTGCCTTTATCCGCCCTGCTCTTTTTGTCTTCTACTTATCTTTTCCTTATTGCACCTGCAATTCCTTTTGCATAATAGCACTCTTTGACATTTGTTGATGCAAACAAACTTGCAGGGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCAATTGGTGACAAGTAAATCTTGCCAAATAATAAGAATTGGAGACTAGAAAGCAT</genome_strand>
        <mrna_strand>CCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCAATTGGTGACAAGTAAATCTTGCCAAATAATAAGAATTGGAGACTAGAAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717744" ref_strand="+" ref_description="SGN-E717744 [FC02CE01]">
      <seq>gacggccaaaacccagcaaaaatggcgttaaggggaacgatgctacgaaccgccgggaagttcgccggcgtgaactccagtctccgacgatttgcccacatcacttcccgtccggcgcctctagatagcgtggttgatcggccgacggcgacatcaccgtcgttggttttacctgaaaatgagaataacagcaatatgtttccaaattcacctttcaattgggggtccatggagcttatggctgtccctaagaagaaggtttctcctcacaagagaggcataaggaatggaccaaaggctctaaaacccgttccagtgattattcgttgcaaggcttgtggtcgagtcaagttgccacatttcttttgttgcagtgggattaagcaaaaccctggtgaagagaacaattccaccggttgatcaaatcgaagggattattttcttcattttcaaatccctttctttgtagtagaatctccggttagaaactaggaaggctacgttatatcatgccggcattgtgtacaatagtgtagtcattgcagcatgtactcaaattctatatcagttgctttatttcacttcaattggtgacnaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="44797" stop="40810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44498" g_stop="44241" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42932" g_stop="42859" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="332" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41379" g_stop="41115" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="597" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="640"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E717744" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44498" e_stop="44241"/>
          <exon e_start="42932" e_stop="42859"/>
          <exon e_start="41379" e_stop="41115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGCCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAGGTTTGATTTTCTTCTCCTCAAAGATCCTTCTTCTTAAAAGTGTTGCGAGTCTCAGCTCAGTTCAAGTTAAATTTAAGCTTAATTTATTGAATCGTTAAATGTATCCTTTAAGATAGATATATAACAGGAAGTATTGCATATTTGTTTGTGCATAGCAATTTCAGTCAATACAAGCTAGATGACTCGAGGAATATTCTGAAGATAGTTGCCACTTAGGATCACTGTGAACCTATCTTTCCCCTTGAGGATCAGTGATAGATTGGGAATATGATCCTTGTTGTAGAAAAGCAAAAAGCCATTGTCTCTGACTCTCTGTCGCTTGGATCCTCTAAAATGATGTTACACCGTGTCGGATCCTCTCAAAATGCAAGTTGTGTTCTAGCACGTATTAGTACGTTGAATAGCAACTAATAGATCATAAACATTTGGTTGGTTAAAAATAAGCAATGAAGCCATGATTAGAAGATGTTGAGGTGGGCATACTAGGAGTGATAAGATTGATAATAAGATATCTAGGAAAAGGTAGGAGTGTCCTCCGTGGTGGACAAGAGCATGAAAGCGAGACTAAGATAGTTTGGGCATATAAAATGACATGTTAAGATGCCCCCACGAGGACGTGTGAGAAGTTGACTGTGGTGGATTCAGGGAGAGATAGAGATAGGCCGAAGAAGTATTGGGGAGAGGCGATTAGACATGACATGATATATATTCTCCTTATTGGGGACATGACTAGATTATGGATTAGGATAGAAGGTTAATAGATAGTAAACGTTGTCTCACTTTCTCATGAGATAAGCTTGGTGGTAGTTTGGTGCAACGTACCTGTTTCTCCATACCGGTAGTAGTATCATTTACTCTTGTAGTTTCTTATCCAACAATTTTTGTTACTAGCTATTGTTTCTTTTGCTTTGGTTATTGCATTATTTGGCTGTTGTTATTGTTCCTTGTTTTCTGAATGCTATGTAATACTGTTCCTATTATTTGATGTCCTCTCTTTTCTTCTGTATTTTCCTTTTCATATTGCGATAATATGCATTACTTGAGTTGAGAGTCTTTTGGAAATAATCTCTCTATCATTTGTTTGTGCATGGATTTGCGCTTGTTTAGATATTCGTATTCGTAATGTTTTTCATTTGGTTGTGCATGTTGGCTTTGCGCTTATTTAGATTTTCCTATTCTATCACATGTATGCACAAAATATGTACATGTTCTGAACTTATGTGTGTTGGATGGTGCTCTGTAGAAGAGAGAGTGTTATAGAATTTACATCTGACTGTTTTTCTTAATGGATTGTGGTCAATAATGCAGGTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAAGTAAGAGCTCTTCCAGTAAAGTGTACAAGATGGATTTGAAAATTTTTAACTAATAAGCAAAATCCCTGGTGTCATTTAGCCTGTATACTCTTGAATTTCGAAAGCTGGTTTGAGGTTATTGGAAAAAAACACAACTTTACCTGCAATCTCTCAAAAATAATAGGAACCTACATCTCGAGAACATGTAAACCAAACAAAAGAGTAAAAGAGGAGTTTTACAATTTTTGAGTAAAAGAAAAATCAAATAAGAAGGAAATGATTATTTCGATAATAGCTTCACCTATTGAGCTTGCCTTGGATTGCTTAGCTTATTCGCCATTATTTGGTCAACATTTTGTCCTTTTTGGAAGTTCAAATTGTTGTTTTTCTTCCGTGTAGAGATAAATAAAAGGAAGCAATTGGTCTGAGAACTTGGACAGAGTCTGAAATATCAGATTGAGAAATTAAGTGCTTGCAAACTTTCAGTGCTGGCTTTGTTAATATCTCTTAACTAGGTTCTATAACTACATACTATTATTATAGTTGGTTTTATTTTAGTTGAGGCACTTCAGTTTTAAAATTTTGCTTCAAACTGGGGTGTTGGTAGTGGCAACGTTTCGCCTTATTGTTGAAGTATCAATTGCTGACAGCATTGGTCTTAACTGTGTTTTGAAGCAGATGATAGTTAAACGTTTCTCTTTACTCGTAAAAAAACAGAATTAATTGATAACTGTGAAGTGTGATCAAAAGGGAAACATCTACTCAGGAAAGATACAAACACGCTGTTAGAAAACCTCTGGTTGTGTTTCCAAATGTCAGGAAGATTTTATCTGCTATCCACATTTTCTTTTTCCAGGCATTTGCCTGTTTTGAATTTCGTTTATCTGCTGTTATCATTGACATCTCTCTTCCTCTATGAGCCCCCCCATGTTGTGCATTGTTAATTCATTCTTCTTTTCAGTTTTATATTCTTTATTTTACTGAAAAACATATGATGGCTCGTTTTAAAGCCAGTGCTCATATGTAGAGTAACATTGAGTCAGCTTTCAAGAGGGTCTATGTTTTTAGCATAATTTGGTTAAGAAAATGATTTGAAAGATGTTATCTTTTTAAGTGACTGAATGATCAGTATATATTGAACGTGCGGGTCTCTGAGGTTTGTCATGCAGTCAGTAATCCTTGCTTAAAAGCTAGAAGTCATGAGCAGGACTTTTAAAGCTGGTATTCCTCTCTGCGGGTGTGTTGGAGTTACTATTGATAATGATGCTTCTCTATAGTTGTTCAGAACGCCGATGATGATGCTTATCTAGGTTTACACTTTGGAAGACAAGGGCATGACATCTTACGTTTGCCTCCATCCGCTCTGCTCTCTTTGTCTTCTACATTTGCCTTTATCCGCCCTGCTCTTTTTGTCTTCTACTTATCTTTTCCTTATTGCACCTGCAATTCCTTTTGCATAATAGCACTCTTTGACATTTGTTGATGCAAACAAACTTGCAGGGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCAATTGGTGACAA</genome_strand>
        <mrna_strand>GACGGCCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCAATTGGTGACNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732484" ref_strand="+" ref_description="SGN-E732484 [LB02BC01]">
      <seq>ctctgcacggccaaaacccagcaaaaatggcgttaaggggaacgatgctacgaaccgccgggaagttcgccggcgtgaactccagtctccgacgatttgcccacatcacttcccgtccggcgcctctagatagcgtggttgatcggccgacggcgacatcaccgtcgttggttttacctgaaaatgagaataacagcaatatgtttccaaattcacctttcaattgggggtccatggagcttatggctgtccctaagaagaaggtttctcctcacaagagaggcataaggaatggaccaaaggctctaaaacccgttccagtgattattcgttgcaaggcttgtggtcgagtcaagttgccacatttcttttgttgcagtgggattaagcaaaaccctggtgaagagaacaattccaccggttgatcaaatcgaagggattattttcttcattttcaaatccctttctttgtagtagaatctccggttagaaactaggaaggctacgttatatcatgccggcattgtgtacaatagtgtagtcattgcagcatgtactcaaattctatatcagttgctttatttcacttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="44803" stop="40825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44503" g_stop="44241" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42932" g_stop="42859" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="337" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41379" g_stop="41126" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="591" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="608"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E732484" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44503" e_stop="44241"/>
          <exon e_start="42932" e_stop="42859"/>
          <exon e_start="41379" e_stop="41126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCACGGCCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAGGTTTGATTTTCTTCTCCTCAAAGATCCTTCTTCTTAAAAGTGTTGCGAGTCTCAGCTCAGTTCAAGTTAAATTTAAGCTTAATTTATTGAATCGTTAAATGTATCCTTTAAGATAGATATATAACAGGAAGTATTGCATATTTGTTTGTGCATAGCAATTTCAGTCAATACAAGCTAGATGACTCGAGGAATATTCTGAAGATAGTTGCCACTTAGGATCACTGTGAACCTATCTTTCCCCTTGAGGATCAGTGATAGATTGGGAATATGATCCTTGTTGTAGAAAAGCAAAAAGCCATTGTCTCTGACTCTCTGTCGCTTGGATCCTCTAAAATGATGTTACACCGTGTCGGATCCTCTCAAAATGCAAGTTGTGTTCTAGCACGTATTAGTACGTTGAATAGCAACTAATAGATCATAAACATTTGGTTGGTTAAAAATAAGCAATGAAGCCATGATTAGAAGATGTTGAGGTGGGCATACTAGGAGTGATAAGATTGATAATAAGATATCTAGGAAAAGGTAGGAGTGTCCTCCGTGGTGGACAAGAGCATGAAAGCGAGACTAAGATAGTTTGGGCATATAAAATGACATGTTAAGATGCCCCCACGAGGACGTGTGAGAAGTTGACTGTGGTGGATTCAGGGAGAGATAGAGATAGGCCGAAGAAGTATTGGGGAGAGGCGATTAGACATGACATGATATATATTCTCCTTATTGGGGACATGACTAGATTATGGATTAGGATAGAAGGTTAATAGATAGTAAACGTTGTCTCACTTTCTCATGAGATAAGCTTGGTGGTAGTTTGGTGCAACGTACCTGTTTCTCCATACCGGTAGTAGTATCATTTACTCTTGTAGTTTCTTATCCAACAATTTTTGTTACTAGCTATTGTTTCTTTTGCTTTGGTTATTGCATTATTTGGCTGTTGTTATTGTTCCTTGTTTTCTGAATGCTATGTAATACTGTTCCTATTATTTGATGTCCTCTCTTTTCTTCTGTATTTTCCTTTTCATATTGCGATAATATGCATTACTTGAGTTGAGAGTCTTTTGGAAATAATCTCTCTATCATTTGTTTGTGCATGGATTTGCGCTTGTTTAGATATTCGTATTCGTAATGTTTTTCATTTGGTTGTGCATGTTGGCTTTGCGCTTATTTAGATTTTCCTATTCTATCACATGTATGCACAAAATATGTACATGTTCTGAACTTATGTGTGTTGGATGGTGCTCTGTAGAAGAGAGAGTGTTATAGAATTTACATCTGACTGTTTTTCTTAATGGATTGTGGTCAATAATGCAGGTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAAGTAAGAGCTCTTCCAGTAAAGTGTACAAGATGGATTTGAAAATTTTTAACTAATAAGCAAAATCCCTGGTGTCATTTAGCCTGTATACTCTTGAATTTCGAAAGCTGGTTTGAGGTTATTGGAAAAAAACACAACTTTACCTGCAATCTCTCAAAAATAATAGGAACCTACATCTCGAGAACATGTAAACCAAACAAAAGAGTAAAAGAGGAGTTTTACAATTTTTGAGTAAAAGAAAAATCAAATAAGAAGGAAATGATTATTTCGATAATAGCTTCACCTATTGAGCTTGCCTTGGATTGCTTAGCTTATTCGCCATTATTTGGTCAACATTTTGTCCTTTTTGGAAGTTCAAATTGTTGTTTTTCTTCCGTGTAGAGATAAATAAAAGGAAGCAATTGGTCTGAGAACTTGGACAGAGTCTGAAATATCAGATTGAGAAATTAAGTGCTTGCAAACTTTCAGTGCTGGCTTTGTTAATATCTCTTAACTAGGTTCTATAACTACATACTATTATTATAGTTGGTTTTATTTTAGTTGAGGCACTTCAGTTTTAAAATTTTGCTTCAAACTGGGGTGTTGGTAGTGGCAACGTTTCGCCTTATTGTTGAAGTATCAATTGCTGACAGCATTGGTCTTAACTGTGTTTTGAAGCAGATGATAGTTAAACGTTTCTCTTTACTCGTAAAAAAACAGAATTAATTGATAACTGTGAAGTGTGATCAAAAGGGAAACATCTACTCAGGAAAGATACAAACACGCTGTTAGAAAACCTCTGGTTGTGTTTCCAAATGTCAGGAAGATTTTATCTGCTATCCACATTTTCTTTTTCCAGGCATTTGCCTGTTTTGAATTTCGTTTATCTGCTGTTATCATTGACATCTCTCTTCCTCTATGAGCCCCCCCATGTTGTGCATTGTTAATTCATTCTTCTTTTCAGTTTTATATTCTTTATTTTACTGAAAAACATATGATGGCTCGTTTTAAAGCCAGTGCTCATATGTAGAGTAACATTGAGTCAGCTTTCAAGAGGGTCTATGTTTTTAGCATAATTTGGTTAAGAAAATGATTTGAAAGATGTTATCTTTTTAAGTGACTGAATGATCAGTATATATTGAACGTGCGGGTCTCTGAGGTTTGTCATGCAGTCAGTAATCCTTGCTTAAAAGCTAGAAGTCATGAGCAGGACTTTTAAAGCTGGTATTCCTCTCTGCGGGTGTGTTGGAGTTACTATTGATAATGATGCTTCTCTATAGTTGTTCAGAACGCCGATGATGATGCTTATCTAGGTTTACACTTTGGAAGACAAGGGCATGACATCTTACGTTTGCCTCCATCCGCTCTGCTCTCTTTGTCTTCTACATTTGCCTTTATCCGCCCTGCTCTTTTTGTCTTCTACTTATCTTTTCCTTATTGCACCTGCAATTCCTTTTGCATAATAGCACTCTTTGACATTTGTTGATGCAAACAAACTTGCAGGGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCA</genome_strand>
        <mrna_strand>CTCTGCACGGCCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619700" ref_strand="+" ref_description="SGN-E619700 [70393]">
      <seq>aaatggcgttaagggaaacgatgctacgaaccgccgggaagttcgccggtatgaactctaatctccgacgatttatccacatcacttcacgtccggcgcctctagatagcgtggttgatcggctgacggcgacatcaccgtcgttggttttacctgaaaatgagaataacagcaacatgtttccaaattcacctttcaattgggggtccatggagcttatggctgttcctaagaagaaggtttctcctcacaagagaggcataaggaatggaccaaaggctctaaaacccgttccagtgattattcgttgcaaggcttgtggtcgagtcaagttgccacatttcttttgttgcagtgggattaagcagaaccctggtgaagagaacaactctaccggttgatcaaattgaagggatcattcgacatattttcttcattttcaaatccctttctttgtagtagaatctccggttagaaactaggaaggttacgttatttcatgcccgcattgtgtacaatagtgtagtcattgcagcatgtactcaaattccatgttaagttgcactatatcagttgctttaaaaacacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="44779" stop="40828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44479" g_stop="44241" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42932" g_stop="42859" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="313" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41379" g_stop="41149" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="553" r_length="240" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E619700" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44479" e_stop="44241"/>
          <exon e_start="42932" e_stop="42859"/>
          <exon e_start="41379" e_stop="41149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAGGTTTGATTTTCTTCTCCTCAAAGATCCTTCTTCTTAAAAGTGTTGCGAGTCTCAGCTCAGTTCAAGTTAAATTTAAGCTTAATTTATTGAATCGTTAAATGTATCCTTTAAGATAGATATATAACAGGAAGTATTGCATATTTGTTTGTGCATAGCAATTTCAGTCAATACAAGCTAGATGACTCGAGGAATATTCTGAAGATAGTTGCCACTTAGGATCACTGTGAACCTATCTTTCCCCTTGAGGATCAGTGATAGATTGGGAATATGATCCTTGTTGTAGAAAAGCAAAAAGCCATTGTCTCTGACTCTCTGTCGCTTGGATCCTCTAAAATGATGTTACACCGTGTCGGATCCTCTCAAAATGCAAGTTGTGTTCTAGCACGTATTAGTACGTTGAATAGCAACTAATAGATCATAAACATTTGGTTGGTTAAAAATAAGCAATGAAGCCATGATTAGAAGATGTTGAGGTGGGCATACTAGGAGTGATAAGATTGATAATAAGATATCTAGGAAAAGGTAGGAGTGTCCTCCGTGGTGGACAAGAGCATGAAAGCGAGACTAAGATAGTTTGGGCATATAAAATGACATGTTAAGATGCCCCCACGAGGACGTGTGAGAAGTTGACTGTGGTGGATTCAGGGAGAGATAGAGATAGGCCGAAGAAGTATTGGGGAGAGGCGATTAGACATGACATGATATATATTCTCCTTATTGGGGACATGACTAGATTATGGATTAGGATAGAAGGTTAATAGATAGTAAACGTTGTCTCACTTTCTCATGAGATAAGCTTGGTGGTAGTTTGGTGCAACGTACCTGTTTCTCCATACCGGTAGTAGTATCATTTACTCTTGTAGTTTCTTATCCAACAATTTTTGTTACTAGCTATTGTTTCTTTTGCTTTGGTTATTGCATTATTTGGCTGTTGTTATTGTTCCTTGTTTTCTGAATGCTATGTAATACTGTTCCTATTATTTGATGTCCTCTCTTTTCTTCTGTATTTTCCTTTTCATATTGCGATAATATGCATTACTTGAGTTGAGAGTCTTTTGGAAATAATCTCTCTATCATTTGTTTGTGCATGGATTTGCGCTTGTTTAGATATTCGTATTCGTAATGTTTTTCATTTGGTTGTGCATGTTGGCTTTGCGCTTATTTAGATTTTCCTATTCTATCACATGTATGCACAAAATATGTACATGTTCTGAACTTATGTGTGTTGGATGGTGCTCTGTAGAAGAGAGAGTGTTATAGAATTTACATCTGACTGTTTTTCTTAATGGATTGTGGTCAATAATGCAGGTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAAGTAAGAGCTCTTCCAGTAAAGTGTACAAGATGGATTTGAAAATTTTTAACTAATAAGCAAAATCCCTGGTGTCATTTAGCCTGTATACTCTTGAATTTCGAAAGCTGGTTTGAGGTTATTGGAAAAAAACACAACTTTACCTGCAATCTCTCAAAAATAATAGGAACCTACATCTCGAGAACATGTAAACCAAACAAAAGAGTAAAAGAGGAGTTTTACAATTTTTGAGTAAAAGAAAAATCAAATAAGAAGGAAATGATTATTTCGATAATAGCTTCACCTATTGAGCTTGCCTTGGATTGCTTAGCTTATTCGCCATTATTTGGTCAACATTTTGTCCTTTTTGGAAGTTCAAATTGTTGTTTTTCTTCCGTGTAGAGATAAATAAAAGGAAGCAATTGGTCTGAGAACTTGGACAGAGTCTGAAATATCAGATTGAGAAATTAAGTGCTTGCAAACTTTCAGTGCTGGCTTTGTTAATATCTCTTAACTAGGTTCTATAACTACATACTATTATTATAGTTGGTTTTATTTTAGTTGAGGCACTTCAGTTTTAAAATTTTGCTTCAAACTGGGGTGTTGGTAGTGGCAACGTTTCGCCTTATTGTTGAAGTATCAATTGCTGACAGCATTGGTCTTAACTGTGTTTTGAAGCAGATGATAGTTAAACGTTTCTCTTTACTCGTAAAAAAACAGAATTAATTGATAACTGTGAAGTGTGATCAAAAGGGAAACATCTACTCAGGAAAGATACAAACACGCTGTTAGAAAACCTCTGGTTGTGTTTCCAAATGTCAGGAAGATTTTATCTGCTATCCACATTTTCTTTTTCCAGGCATTTGCCTGTTTTGAATTTCGTTTATCTGCTGTTATCATTGACATCTCTCTTCCTCTATGAGCCCCCCCATGTTGTGCATTGTTAATTCATTCTTCTTTTCAGTTTTATATTCTTTATTTTACTGAAAAACATATGATGGCTCGTTTTAAAGCCAGTGCTCATATGTAGAGTAACATTGAGTCAGCTTTCAAGAGGGTCTATGTTTTTAGCATAATTTGGTTAAGAAAATGATTTGAAAGATGTTATCTTTTTAAGTGACTGAATGATCAGTATATATTGAACGTGCGGGTCTCTGAGGTTTGTCATGCAGTCAGTAATCCTTGCTTAAAAGCTAGAAGTCATGAGCAGGACTTTTAAAGCTGGTATTCCTCTCTGCGGGTGTGTTGGAGTTACTATTGATAATGATGCTTCTCTATAGTTGTTCAGAACGCCGATGATGATGCTTATCTAGGTTTACACTTTGGAAGACAAGGGCATGACATCTTACGTTTGCCTCCATCCGCTCTGCTCTCTTTGTCTTCTACATTTGCCTTTATCCGCCCTGCTCTTTTTGTCTTCTACTTATCTTTTCCTTATTGCACCTGCAATTCCTTTTGCATAATAGCACTCTTTGACATTTGTTGATGCAAACAAACTTGCAGGGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGG---A-T-----TATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTAT</genome_strand>
        <mrna_strand>AAATGGCGTTAAGGGAAACGATGCTACGAACCGCCGGGAAGTTCGCCGGTATGAACTCTAATCTCCGACGATTTATCCACATCACTTCACGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCTGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAACATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTTCCTAAGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAGAACCCTGGTGAAGAGAACAACTCTACCGGTTGATCAAATTGAAGGGATCATTCGACATATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGTTACGTTATTTCATGCCCGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619511" ref_strand="+" ref_description="SGN-E619511 [70202]">
      <seq>tggaaacgatgctacgaaccgccgggaagttcgccggtatgaaccctaatccccgacgatttatccacatcacttcacgtccggcgcctctagatagcgtggttgatcggctgacggcgacatcaccgtcgttggttttacctgaaaatgagaataacagcaatatgtttccaaattcacctttcaattgggggtccatggagcttatggctgttcctaagaagaaggtttctcctcacaagagaggcataaggaatggaccaaaggctctaaaacccgttccagtgattattcgttgcaaggcttgtggtcgagtcaagttgccacatttcttttgttgcagtgggattaagcagaaccctggtgaagagaacaattctaccggttgatcaaattgaagggatcattcgacatattttcttcattttcaaatccctttctttgtagtagaatctccagttagaaactaggaaggttacgttatatcatgcccgcattgtgtacaatagtgtagtcattgcagcatgtactcaaattccatgttaagttgcactatatcagttgctttattctaaaaaaaaaaacacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="44766" stop="40808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44467" g_stop="44241" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42932" g_stop="42859" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="301" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41379" g_stop="41149" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="541" r_length="240" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="586"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E619511" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44467" e_stop="44241"/>
          <exon e_start="42932" e_stop="42859"/>
          <exon e_start="41379" e_stop="41149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAGGTTTGATTTTCTTCTCCTCAAAGATCCTTCTTCTTAAAAGTGTTGCGAGTCTCAGCTCAGTTCAAGTTAAATTTAAGCTTAATTTATTGAATCGTTAAATGTATCCTTTAAGATAGATATATAACAGGAAGTATTGCATATTTGTTTGTGCATAGCAATTTCAGTCAATACAAGCTAGATGACTCGAGGAATATTCTGAAGATAGTTGCCACTTAGGATCACTGTGAACCTATCTTTCCCCTTGAGGATCAGTGATAGATTGGGAATATGATCCTTGTTGTAGAAAAGCAAAAAGCCATTGTCTCTGACTCTCTGTCGCTTGGATCCTCTAAAATGATGTTACACCGTGTCGGATCCTCTCAAAATGCAAGTTGTGTTCTAGCACGTATTAGTACGTTGAATAGCAACTAATAGATCATAAACATTTGGTTGGTTAAAAATAAGCAATGAAGCCATGATTAGAAGATGTTGAGGTGGGCATACTAGGAGTGATAAGATTGATAATAAGATATCTAGGAAAAGGTAGGAGTGTCCTCCGTGGTGGACAAGAGCATGAAAGCGAGACTAAGATAGTTTGGGCATATAAAATGACATGTTAAGATGCCCCCACGAGGACGTGTGAGAAGTTGACTGTGGTGGATTCAGGGAGAGATAGAGATAGGCCGAAGAAGTATTGGGGAGAGGCGATTAGACATGACATGATATATATTCTCCTTATTGGGGACATGACTAGATTATGGATTAGGATAGAAGGTTAATAGATAGTAAACGTTGTCTCACTTTCTCATGAGATAAGCTTGGTGGTAGTTTGGTGCAACGTACCTGTTTCTCCATACCGGTAGTAGTATCATTTACTCTTGTAGTTTCTTATCCAACAATTTTTGTTACTAGCTATTGTTTCTTTTGCTTTGGTTATTGCATTATTTGGCTGTTGTTATTGTTCCTTGTTTTCTGAATGCTATGTAATACTGTTCCTATTATTTGATGTCCTCTCTTTTCTTCTGTATTTTCCTTTTCATATTGCGATAATATGCATTACTTGAGTTGAGAGTCTTTTGGAAATAATCTCTCTATCATTTGTTTGTGCATGGATTTGCGCTTGTTTAGATATTCGTATTCGTAATGTTTTTCATTTGGTTGTGCATGTTGGCTTTGCGCTTATTTAGATTTTCCTATTCTATCACATGTATGCACAAAATATGTACATGTTCTGAACTTATGTGTGTTGGATGGTGCTCTGTAGAAGAGAGAGTGTTATAGAATTTACATCTGACTGTTTTTCTTAATGGATTGTGGTCAATAATGCAGGTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAAGTAAGAGCTCTTCCAGTAAAGTGTACAAGATGGATTTGAAAATTTTTAACTAATAAGCAAAATCCCTGGTGTCATTTAGCCTGTATACTCTTGAATTTCGAAAGCTGGTTTGAGGTTATTGGAAAAAAACACAACTTTACCTGCAATCTCTCAAAAATAATAGGAACCTACATCTCGAGAACATGTAAACCAAACAAAAGAGTAAAAGAGGAGTTTTACAATTTTTGAGTAAAAGAAAAATCAAATAAGAAGGAAATGATTATTTCGATAATAGCTTCACCTATTGAGCTTGCCTTGGATTGCTTAGCTTATTCGCCATTATTTGGTCAACATTTTGTCCTTTTTGGAAGTTCAAATTGTTGTTTTTCTTCCGTGTAGAGATAAATAAAAGGAAGCAATTGGTCTGAGAACTTGGACAGAGTCTGAAATATCAGATTGAGAAATTAAGTGCTTGCAAACTTTCAGTGCTGGCTTTGTTAATATCTCTTAACTAGGTTCTATAACTACATACTATTATTATAGTTGGTTTTATTTTAGTTGAGGCACTTCAGTTTTAAAATTTTGCTTCAAACTGGGGTGTTGGTAGTGGCAACGTTTCGCCTTATTGTTGAAGTATCAATTGCTGACAGCATTGGTCTTAACTGTGTTTTGAAGCAGATGATAGTTAAACGTTTCTCTTTACTCGTAAAAAAACAGAATTAATTGATAACTGTGAAGTGTGATCAAAAGGGAAACATCTACTCAGGAAAGATACAAACACGCTGTTAGAAAACCTCTGGTTGTGTTTCCAAATGTCAGGAAGATTTTATCTGCTATCCACATTTTCTTTTTCCAGGCATTTGCCTGTTTTGAATTTCGTTTATCTGCTGTTATCATTGACATCTCTCTTCCTCTATGAGCCCCCCCATGTTGTGCATTGTTAATTCATTCTTCTTTTCAGTTTTATATTCTTTATTTTACTGAAAAACATATGATGGCTCGTTTTAAAGCCAGTGCTCATATGTAGAGTAACATTGAGTCAGCTTTCAAGAGGGTCTATGTTTTTAGCATAATTTGGTTAAGAAAATGATTTGAAAGATGTTATCTTTTTAAGTGACTGAATGATCAGTATATATTGAACGTGCGGGTCTCTGAGGTTTGTCATGCAGTCAGTAATCCTTGCTTAAAAGCTAGAAGTCATGAGCAGGACTTTTAAAGCTGGTATTCCTCTCTGCGGGTGTGTTGGAGTTACTATTGATAATGATGCTTCTCTATAGTTGTTCAGAACGCCGATGATGATGCTTATCTAGGTTTACACTTTGGAAGACAAGGGCATGACATCTTACGTTTGCCTCCATCCGCTCTGCTCTCTTTGTCTTCTACATTTGCCTTTATCCGCCCTGCTCTTTTTGTCTTCTACTTATCTTTTCCTTATTGCACCTGCAATTCCTTTTGCATAATAGCACTCTTTGACATTTGTTGATGCAAACAAACTTGCAGGGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGG---A-T-----TATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTAT</genome_strand>
        <mrna_strand>TGGAAACGATGCTACGAACCGCCGGGAAGTTCGCCGGTATGAACCCTAATCCCCGACGATTTATCCACATCACTTCACGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCTGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTTCCTAAGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAGAACCCTGGTGAAGAGAACAATTCTACCGGTTGATCAAATTGAAGGGATCATTCGACATATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCAGTTAGAAACTAGGAAGGTTACGTTATATCATGCCCGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338143" ref_strand="+" ref_description="SGN-E338143 [cTOE-13-D17]">
      <seq>ttaaggggaacgatgctacgaaccgccgggaagttcgccggcgtgaactccagtctccgacgatttgcccacatcacttcccgtccggcgcctctagatagcgtggttgatcggccgacggcgacatcaccgtcgttggttttacctgaaaatgagaataacagcaatatgtttgcaaattcacctttcaattgggggtccatggagcttatggctgtccctaagaagaaggtttctcctcacaagagaggcataaggaatggaccaaaggctctaaaacccgttccagtgattattcattgcaaggcttgtggtcgagtcaagttgccacatttcttttgttgcagtgggattaagccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="44771" stop="41023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44471" g_stop="44241" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42932" g_stop="42859" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="305" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.798" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41379" g_stop="41323" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="362" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E338143" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44471" e_stop="44241"/>
          <exon e_start="42932" e_stop="42859"/>
          <exon e_start="41379" e_stop="41323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAGGTTTGATTTTCTTCTCCTCAAAGATCCTTCTTCTTAAAAGTGTTGCGAGTCTCAGCTCAGTTCAAGTTAAATTTAAGCTTAATTTATTGAATCGTTAAATGTATCCTTTAAGATAGATATATAACAGGAAGTATTGCATATTTGTTTGTGCATAGCAATTTCAGTCAATACAAGCTAGATGACTCGAGGAATATTCTGAAGATAGTTGCCACTTAGGATCACTGTGAACCTATCTTTCCCCTTGAGGATCAGTGATAGATTGGGAATATGATCCTTGTTGTAGAAAAGCAAAAAGCCATTGTCTCTGACTCTCTGTCGCTTGGATCCTCTAAAATGATGTTACACCGTGTCGGATCCTCTCAAAATGCAAGTTGTGTTCTAGCACGTATTAGTACGTTGAATAGCAACTAATAGATCATAAACATTTGGTTGGTTAAAAATAAGCAATGAAGCCATGATTAGAAGATGTTGAGGTGGGCATACTAGGAGTGATAAGATTGATAATAAGATATCTAGGAAAAGGTAGGAGTGTCCTCCGTGGTGGACAAGAGCATGAAAGCGAGACTAAGATAGTTTGGGCATATAAAATGACATGTTAAGATGCCCCCACGAGGACGTGTGAGAAGTTGACTGTGGTGGATTCAGGGAGAGATAGAGATAGGCCGAAGAAGTATTGGGGAGAGGCGATTAGACATGACATGATATATATTCTCCTTATTGGGGACATGACTAGATTATGGATTAGGATAGAAGGTTAATAGATAGTAAACGTTGTCTCACTTTCTCATGAGATAAGCTTGGTGGTAGTTTGGTGCAACGTACCTGTTTCTCCATACCGGTAGTAGTATCATTTACTCTTGTAGTTTCTTATCCAACAATTTTTGTTACTAGCTATTGTTTCTTTTGCTTTGGTTATTGCATTATTTGGCTGTTGTTATTGTTCCTTGTTTTCTGAATGCTATGTAATACTGTTCCTATTATTTGATGTCCTCTCTTTTCTTCTGTATTTTCCTTTTCATATTGCGATAATATGCATTACTTGAGTTGAGAGTCTTTTGGAAATAATCTCTCTATCATTTGTTTGTGCATGGATTTGCGCTTGTTTAGATATTCGTATTCGTAATGTTTTTCATTTGGTTGTGCATGTTGGCTTTGCGCTTATTTAGATTTTCCTATTCTATCACATGTATGCACAAAATATGTACATGTTCTGAACTTATGTGTGTTGGATGGTGCTCTGTAGAAGAGAGAGTGTTATAGAATTTACATCTGACTGTTTTTCTTAATGGATTGTGGTCAATAATGCAGGTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAAGTAAGAGCTCTTCCAGTAAAGTGTACAAGATGGATTTGAAAATTTTTAACTAATAAGCAAAATCCCTGGTGTCATTTAGCCTGTATACTCTTGAATTTCGAAAGCTGGTTTGAGGTTATTGGAAAAAAACACAACTTTACCTGCAATCTCTCAAAAATAATAGGAACCTACATCTCGAGAACATGTAAACCAAACAAAAGAGTAAAAGAGGAGTTTTACAATTTTTGAGTAAAAGAAAAATCAAATAAGAAGGAAATGATTATTTCGATAATAGCTTCACCTATTGAGCTTGCCTTGGATTGCTTAGCTTATTCGCCATTATTTGGTCAACATTTTGTCCTTTTTGGAAGTTCAAATTGTTGTTTTTCTTCCGTGTAGAGATAAATAAAAGGAAGCAATTGGTCTGAGAACTTGGACAGAGTCTGAAATATCAGATTGAGAAATTAAGTGCTTGCAAACTTTCAGTGCTGGCTTTGTTAATATCTCTTAACTAGGTTCTATAACTACATACTATTATTATAGTTGGTTTTATTTTAGTTGAGGCACTTCAGTTTTAAAATTTTGCTTCAAACTGGGGTGTTGGTAGTGGCAACGTTTCGCCTTATTGTTGAAGTATCAATTGCTGACAGCATTGGTCTTAACTGTGTTTTGAAGCAGATGATAGTTAAACGTTTCTCTTTACTCGTAAAAAAACAGAATTAATTGATAACTGTGAAGTGTGATCAAAAGGGAAACATCTACTCAGGAAAGATACAAACACGCTGTTAGAAAACCTCTGGTTGTGTTTCCAAATGTCAGGAAGATTTTATCTGCTATCCACATTTTCTTTTTCCAGGCATTTGCCTGTTTTGAATTTCGTTTATCTGCTGTTATCATTGACATCTCTCTTCCTCTATGAGCCCCCCCATGTTGTGCATTGTTAATTCATTCTTCTTTTCAGTTTTATATTCTTTATTTTACTGAAAAACATATGATGGCTCGTTTTAAAGCCAGTGCTCATATGTAGAGTAACATTGAGTCAGCTTTCAAGAGGGTCTATGTTTTTAGCATAATTTGGTTAAGAAAATGATTTGAAAGATGTTATCTTTTTAAGTGACTGAATGATCAGTATATATTGAACGTGCGGGTCTCTGAGGTTTGTCATGCAGTCAGTAATCCTTGCTTAAAAGCTAGAAGTCATGAGCAGGACTTTTAAAGCTGGTATTCCTCTCTGCGGGTGTGTTGGAGTTACTATTGATAATGATGCTTCTCTATAGTTGTTCAGAACGCCGATGATGATGCTTATCTAGGTTTACACTTTGGAAGACAAGGGCATGACATCTTACGTTTGCCTCCATCCGCTCTGCTCTCTTTGTCTTCTACATTTGCCTTTATCCGCCCTGCTCTTTTTGTCTTCTACTTATCTTTTCCTTATTGCACCTGCAATTCCTTTTGCATAATAGCACTCTTTGACATTTGTTGATGCAAACAAACTTGCAGGGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAA</genome_strand>
        <mrna_strand>TTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTGCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCATTGCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212080" ref_strand="+" ref_description="SGN-E212080 [cLEC-75-G23]">
      <seq>tcaatattattattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctcctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatgagtgttactaatcctattcatgaaagtgtggcttctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60017" stop="61965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60317" g_stop="60642" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="606" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61665" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="747" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E212080" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60317" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAAT</genome_strand>
        <mrna_strand>TCAATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCT-CCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAAGTGTGGCTTCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240661" ref_strand="+" ref_description="SGN-E240661 [cLED-21-G23]">
      <seq>aatattattattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtttatatagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60019" stop="61176"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60319" g_stop="60642" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60876" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="463" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E240661" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60319" e_stop="60642"/>
          <exon e_start="60738" e_stop="60876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGG</genome_strand>
        <mrna_strand>AATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTTTATATAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237924" ref_strand="+" ref_description="SGN-E237924 [cLED-18-O11]">
      <seq>atattattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaagattgagtgaatcaaggactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60024" stop="61290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60323" g_stop="60642" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="447" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60970" g_stop="60990" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="468" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E237924" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60323" e_stop="60642"/>
          <exon e_start="60738" e_stop="60863"/>
          <exon e_start="60970" e_stop="60990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAG-AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCA</genome_strand>
        <mrna_strand>ATATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG..........................................................................................................ATTGAGTGAATCAAGGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393509" ref_strand="+" ref_description="SGN-E393509 [TUS-39-A16]">
      <seq>attattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagtttgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaaatagggcagctgtgtctggttattggaaagccacaggcacagataaagattgagtgaatcaaggactccaccaactaggccaaatggatccatgaggttggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60025" stop="61320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60325" g_stop="60642" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="445" r_length="127" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60970" g_stop="61018" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="494" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E393509" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60325" e_stop="60642"/>
          <exon e_start="60738" e_stop="60863"/>
          <exon e_start="60970" e_stop="61018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCC-AAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG</genome_strand>
        <mrna_strand>ATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTTGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG..........................................................................................................ATTGAGTGAATCAAGGACTCCACCAACTAGGCCAAATGGATCCATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237824" ref_strand="+" ref_description="SGN-E237824 [cLED-18-B17]">
      <seq>ttattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60026" stop="61926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60326" g_stop="60642" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="443" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60970" g_stop="61018" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="492" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61525" g_stop="61626" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="594" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E237824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60326" e_stop="60642"/>
          <exon e_start="60738" e_stop="60863"/>
          <exon e_start="60970" e_stop="61018"/>
          <exon e_start="61525" e_stop="61626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATG</genome_strand>
        <mrna_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG..........................................................................................................ATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377127" ref_strand="+" ref_description="SGN-E377127 [TUS-21-C21]">
      <seq>ttattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaactttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaaatttatagaagaagaatttggaagagctatagagatgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60026" stop="61891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60326" g_stop="60642" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="597" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61591" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="663" r_length="66" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E377127" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60326" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGA</genome_strand>
        <mrna_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAAC-TTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAAATTTATAGAAGAAGAATTTGG-AAGAGCTATAGAGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241370" ref_strand="+" ref_description="SGN-E241370 [cLED-28-F7]">
      <seq>ttattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60026" stop="61877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60326" g_stop="60642" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="443" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60970" g_stop="61018" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="492" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61525" g_stop="61577" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="545" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E241370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60326" e_stop="60642"/>
          <exon e_start="60738" e_stop="60863"/>
          <exon e_start="60970" e_stop="61018"/>
          <exon e_start="61525" e_stop="61577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGC</genome_strand>
        <mrna_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG..........................................................................................................ATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236465" ref_strand="+" ref_description="SGN-E236465 [cLED-13-P21]">
      <seq>ttattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaactttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60026" stop="61272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60326" g_stop="60642" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60972" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="551" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E236465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60326" e_stop="60642"/>
          <exon e_start="60738" e_stop="60972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATT</genome_strand>
        <mrna_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAAC-TTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241719" ref_strand="+" ref_description="SGN-E241719 [cLED-36-L23]">
      <seq>ttattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaactttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtgtttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60026" stop="61231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60326" g_stop="60642" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60931" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="510" r_length="194" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E241719" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60326" e_stop="60642"/>
          <exon e_start="60738" e_stop="60931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCT</genome_strand>
        <mrna_strand>TTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAAC-TTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTGTTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208807" ref_strand="+" ref_description="SGN-E208807 [cLEC-51-H22]">
      <seq>ttttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaactttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggctcagataaagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60029" stop="61841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60329" g_stop="60642" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="439" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60970" g_stop="61018" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="488" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61525" g_stop="61541" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="505" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E208807" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60329" e_stop="60642"/>
          <exon e_start="60738" e_stop="60863"/>
          <exon e_start="60970" e_stop="61018"/>
          <exon e_start="61525" e_stop="61541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACT</genome_strand>
        <mrna_strand>TTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAAC-TTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCTCAGATAAAG..........................................................................................................ATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211053" ref_strand="+" ref_description="SGN-E211053 [cLEC-69-E10]">
      <seq>ttttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60029" stop="61101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60329" g_stop="60642" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60801" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="378" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E211053" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60329" e_stop="60642"/>
          <exon e_start="60738" e_stop="60801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAA</genome_strand>
        <mrna_strand>TTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245002" ref_strand="+" ref_description="SGN-E245002 [cLEF-2-F2]">
      <seq>ctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60034" stop="61320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60334" g_stop="60642" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="590" r_length="281" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E245002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60334" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG</genome_strand>
        <mrna_strand>CTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233381" ref_strand="+" ref_description="SGN-E233381 [cLED-9-K16]">
      <seq>tagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatgggtggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaaggtgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60042" stop="61072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60342" g_stop="60642" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60772" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="336" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E233381" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60342" e_stop="60642"/>
          <exon e_start="60738" e_stop="60772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTC</genome_strand>
        <mrna_strand>TAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGGTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGGTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212595" ref_strand="+" ref_description="SGN-E212595 [cLEC-74-F6]">
      <seq>gaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaaatcaaggactcaccaactangccaaatggatccatgangttggatgattgggtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60044" stop="61842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60344" g_stop="60642" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="580" r_length="281" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61542" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="598" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E212595" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60344" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTG-AATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTT</genome_strand>
        <mrna_strand>GAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAAATCAAGGACTC-ACCAACTANGCCAAATGGATCCATGANG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207187" ref_strand="+" ref_description="SGN-E207187 [cLEC-30-O10]">
      <seq>ccctacatcaaccccactttatcatacttcttttagcttataattaattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60055" stop="61064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60355" g_stop="60642" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60764" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="315" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E207187" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60355" e_stop="60642"/>
          <exon e_start="60738" e_stop="60764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAAT</genome_strand>
        <mrna_strand>CCCTACATCAACCCCACTTTATCATACTTCTTTTAGCTTATAATTAATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302324" ref_strand="+" ref_description="SGN-E302324 [cLEW-19-L6]">
      <seq>cactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaactttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60069" stop="61874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60369" g_stop="60642" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="554" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61574" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="604" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E302324" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60369" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAG</genome_strand>
        <mrna_strand>CACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAAC-TTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301064" ref_strand="+" ref_description="SGN-E301064 [cLEW-22-H19]">
      <seq>aaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatgagtgttactaatcctattcatgaagttgtggcttctaatggacaacaaacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60136" stop="61980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60436" g_stop="60642" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="488" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61680" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="644" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E301064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60436" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTG</genome_strand>
        <mrna_strand>AAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393435" ref_strand="+" ref_description="SGN-E393435 [TUS-39-A8]">
      <seq>tttttttaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatgagtgttactaatcctattcatgaagttgtggcttctaatggacaacaaacattgaaactaccaaggacttgttcactatctcattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60160" stop="62013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60460" g_stop="60642" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="464" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61713" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="653" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E393435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60460" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTA</genome_strand>
        <mrna_strand>TTTTTTTAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236197" ref_strand="+" ref_description="SGN-E236197 [cLED-20-O15]">
      <seq>ttttttaaaaaaaaatggttgttaataataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60160" stop="61859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60460" g_stop="60642" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="464" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="61559" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="499" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E236197" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60460" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="61559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAA</genome_strand>
        <mrna_strand>TTTTTTAAAAAAAAATGGTTGTTAATAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233601" ref_strand="+" ref_description="SGN-E233601 [cLED-14-C23]">
      <seq>ttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60160" stop="61287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60460" g_stop="60642" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60987" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="433" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E233601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60460" e_stop="60642"/>
          <exon e_start="60738" e_stop="60987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGAC</genome_strand>
        <mrna_strand>TTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233466" ref_strand="+" ref_description="SGN-E233466 [cLED-9-F6]">
      <seq>tatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgagggtaagcctttggaaacactatttttttcctagatattttgattgaatattcactaagaaaattagtggatattttaaagtagttcaatgtaaatgtatacgtttttttttctttcagtgagctgattaatgggaattgagtagaaaaatattttttttatagctcattgattcgtgatgggaaaaataattatttccgataatgagtctctaattttgtttagctataaaatttggttatcgcttttttttttcatagagtatagtttaagttttgtatattaatcaaataatcatttaaaaaataattatgtgtaatgattgatatatactatattgaaaaatatggcatgtaactttctatagcaagttaagttgtacttataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60584" stop="61707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60884" g_stop="61407" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E233466" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60884" e_stop="61407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAA</genome_strand>
        <mrna_strand>TATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGGTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204525" ref_strand="+" ref_description="SGN-E204525 [cLEC-24-C17]">
      <seq>ttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatgagtgttactaatcctattcatgaagttgtggcttctaatggacaacaaacattgaaactaccaaggacttgttcactatctcatttattagaaatggattattttggatcaatttcacaactatttgatgacaataattcatacaatactattagccaaaataatacattaatgaccaatgttaatggatatgttatgcctcatcaagccatggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60606" stop="62144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60906" g_stop="61018" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61525" g_stop="61844" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="433" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E204525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60906" e_stop="61018"/>
          <exon e_start="61525" e_stop="61844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAA</genome_strand>
        <mrna_strand>TTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377126" ref_strand="+" ref_description="SGN-E377126 [TUS-21-C21](-)">
      <seq>aggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatgagtgttactaatcctattcatgaagttgtggcttctaatggacaacaaacattgaaactaccaaggacttgttcactatctcatttattagaaatggattattttggatcaatttcacaactatttgatgacaataattcatacaatactattagccaaaataatacattaatgaccaatgttaatggatatgttatgcctcatcaagccatggagaaatttcaactaggggaagtgtcacaaatttctatgaatccatcctatcaatttcagtaagaaggcggtacgcggcgattaaatatttcgacaacaataattactatgcctcaatttaaaacaagttgattactagtatctcatcaataattgtaacgtatagatgaaatttaaaggtcatggtactataggtaaaaaaaaaaaaaaagattgttgtattactatagaattttattttcgagcacttgtttgaaaaataattaatttggttctgaaattataatattaatattttacaaaggttacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60634" stop="62454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60934" g_stop="61018" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61525" g_stop="62153" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="714" r_length="629" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="724"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E377126" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377126" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60934" e_stop="61018"/>
          <exon e_start="61525" e_stop="62153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAGGTTACCTTTC</genome_strand>
        <mrna_strand>AGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAGGTTACCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233818" ref_strand="+" ref_description="SGN-E233818 [cLEL-8-A13](-)">
      <seq>attattttggatcaatttcacaactatttgatgacaataattcattcaatactataagccaaaataatacattaatgaccaatgttaatggatatgttatgcctcatcaagccatggagaaatttcaactaggggaagtgtcacaaatttctatgaatccatcctatcaatttcagtaagaaggcggtacgcggcgattaaatatttcgacaacaataattactatgcctcaatttaaaacaagttgattactagtatctcatcaataattgtaacgtatagatgaaatttaaaggtcatggtactataggtaaaaaaaaaaaaaaagattgttgtattactatagaattttattttcgagcacttgtttgaaaaataattaatttggttctgaaattataatattaatattttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="61424" stop="62442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61724" g_stop="62143" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="433"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E233818" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61724" e_stop="62143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAG</genome_strand>
        <mrna_strand>ATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATTCAATACTATAAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543370" ref_strand="+" ref_description="SGN-E543370 [TUS-65-C11](-)">
      <seq>cttaatagatacttgagccatcgaaaaaacgaatgatgaaggcggtatcagttgaatctggagaagcatcaaaggctaaaggtcatggagttaacagaggactctctgtatttgatcttgttcttcgtattgttgcgattgttggtaccttagctggagctgtagcaatgggaactgctgaacaaactcttccttttgccacacaacttgtgcaattttcagctcaatatgatgattttgactcatttaagttgttcgtgattgtgaatgcaatagtatgtgcatatcttgctcttactctaccattttccatctttcatattatgaggagcagagcaggaaaaagtcggatcttgctcatcttccttgacgcgataatgctggttcttctcacatctggagcctctgcagcagctgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtataccgatttctgccaacgatctgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttctcagctgtcgcgatatccaggcgataaatcaatgctgtttacattggcttgtgtatctgttgtgtttgatatttgactaaagtttcatgctttggattttgtatgcaatttatcctgttacttatatcaataatatatattgtgcctgtttagtttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="65178" stop="63299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64878" g_stop="64629" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64331" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="374" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63949" g_stop="63600" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="724" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63599" i_stop="63430" i_length="170">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63429" g_stop="63421" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="725" r_stop="733" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E543370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64878" e_stop="64629"/>
          <exon e_start="64454" e_stop="64331"/>
          <exon e_start="63949" e_stop="63600"/>
          <exon e_start="63429" e_stop="63421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAAGTATGTCCATCTATAGAAACTACACATTTTCTATATTTTGAATGATTGATACAGTCTCGGAACTACAAGTTTCAAAAGTCTTTCTTTCTTAAACTTCGTATTCAGGTCAAACTACTTCATATAATTAACACAGAGGGAGTATATTTCATCATCTTTTTTTTTTTCTTGATATAGGTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCGGTAATGTAGATTGAGCTGTTTTTTATATAGTCAGACCTCTTTATAACAACGTTGTTTGTGAGGATATTTTCTGACATCTATAGTGAAATGATAGGGTAAGGTGTATACATATTGTATCCCTATCTCTATCTCGTGGAGATAGTGAGGTTGAGTTTGAAAGATGCTTAGCTCAAAATAACATCAAAATAATGTGATAAATTGAAGCAAAGAACGATACGTGATAAGAAAAATCGAAGGGCAAGATGAAGAGTTAGTTTCACGCAGAGTTGGTTGTTACATACAAACGTTGTTATAGAGAAGTCTGACTGTAGTGTTTCGCTATAACTTTGTGGTTGATTAGAGTAGATTATATGTTTATAATTTTCTTGTTAAATTTTGAAGATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAAATTGGAGTTCAAAAAATGATTCATTTTTTCTCAATTTACTCATCAATTGGAAGTTTAAGCCTCAAAATGAGAAAAAACTCAAAATATTCCATTTTATCTTTGGTTTAGGATTCAATTTACCTATCAAAATTTTATGTATGAAATGCTCAATCATCTTTTTATGTATTCAGAAGAAATAA</genome_strand>
        <mrna_strand>CTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA..............................................................................................................................................................................GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAA..........................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548867" ref_strand="+" ref_description="SGN-E548867 [TUS-65-C11]">
      <seq>cttaatagatacttgagccatcgaaaaaacgaatgatgaaggcggtatcagttgaatctggagaagcatcaaaggctaaaggtcatggagttaacagaggactctctgtatttgatcttgttcttcgtattgttgcgattgttggtaccttagctggagctgtagcaatgggaactgctgaacaaactcttccttttgccacacaacttgtgcaattttcagctcaatatgatgattttgactcatttaagttgttcgtgattgtgaatgcaatagtatgtgcatatcttgctcttactctaccattttccatctttcatattatgaggagcagagcaggaaaaagtcggatcttgctcatcttccttgacgcgataatgctggttcttctcacatctggagcctctgcagcagctgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtataccgatttctgccaacgatctgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttctcagctgtcgcgatatccaggcgataaatcaatgctgtttacattggcttgtgtatctgttgtgtttgatatttgactaaagtttcatgctttggattttgtatgcaatttatcctgttacttatatcaataatatatattgtgcctgtttagtttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="65178" stop="63299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64878" g_stop="64629" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64331" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="374" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63949" g_stop="63593" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="731" r_length="357" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E548867" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64878" e_stop="64629"/>
          <exon e_start="64454" e_stop="64331"/>
          <exon e_start="63949" e_stop="63593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAAGTATGTCCATCTATAGAAACTACACATTTTCTATATTTTGAATGATTGATACAGTCTCGGAACTACAAGTTTCAAAAGTCTTTCTTTCTTAAACTTCGTATTCAGGTCAAACTACTTCATATAATTAACACAGAGGGAGTATATTTCATCATCTTTTTTTTTTTCTTGATATAGGTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCGGTAATGTAGATTGAGCTGTTTTTTATATAGTCAGACCTCTTTATAACAACGTTGTTTGTGAGGATATTTTCTGACATCTATAGTGAAATGATAGGGTAAGGTGTATACATATTGTATCCCTATCTCTATCTCGTGGAGATAGTGAGGTTGAGTTTGAAAGATGCTTAGCTCAAAATAACATCAAAATAATGTGATAAATTGAAGCAAAGAACGATACGTGATAAGAAAAATCGAAGGGCAAGATGAAGAGTTAGTTTCACGCAGAGTTGGTTGTTACATACAAACGTTGTTATAGAGAAGTCTGACTGTAGTGTTTCGCTATAACTTTGTGGTTGATTAGAGTAGATTATATGTTTATAATTTTCTTGTTAAATTTTGAAGATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAAATTGGAG</genome_strand>
        <mrna_strand>CTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA..............................................................................................................................................................................GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309684" ref_strand="+" ref_description="SGN-E309684 [cLEY-26-G19]">
      <seq>tgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtataccgatttctgccaacgatctgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttctcagctgtcgcgatatccaggcgataaatcaatgctgtttacattggcttgtgtatctgttgtgtttgatatttgactaaagtttcatgctttggattttgtatgcaatttatcctgttacttatatcaataatatatattgtgcctgtttagtttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="64208" stop="63299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63908" g_stop="63593" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E309684" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63908" e_stop="63593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAAATTGGAG</genome_strand>
        <mrna_strand>TGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304215" ref_strand="+" ref_description="SGN-E304215 [cLEX-6-F19]">
      <seq>ttaatagatacttgagccatcgaaaaaacgaatgatgaaggcggtatcagttgaatctggagaagcatcaaaggctaaaggtcatggagttaacagaggactctctgtatttgatcttgttcttcgtattgttgcgattgttggtaccttagctggagctgtagcaatgggaactgctgaacaaactcttccttttgccacacaacttgtgcaattttcagctcaatatgatgattttgactcatttaagttgttcgtgattgtgaatgcaatagtatgtgcatatcttgctcttactctaccattttccatctttcatattatgaggagcagagcaggaaaaagtcggatcttgctcatcttccttgacgcgataatgctggttcttctcacatctggagcctctgcagcagctgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtataccgatttctgccaacgatctgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttctcagctgtcgcgatatccaggcgataaatcaatgctgtttacattggctngtgtatctgttgtgtttgatatttgactaaagtttcatgctttggattttgtatgcaatttatcctgttacttatatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="65177" stop="63330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64877" g_stop="64629" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64331" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="373" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63949" g_stop="63630" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="693" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E304215" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64877" e_stop="64629"/>
          <exon e_start="64454" e_stop="64331"/>
          <exon e_start="63949" e_stop="63630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAAGTATGTCCATCTATAGAAACTACACATTTTCTATATTTTGAATGATTGATACAGTCTCGGAACTACAAGTTTCAAAAGTCTTTCTTTCTTAAACTTCGTATTCAGGTCAAACTACTTCATATAATTAACACAGAGGGAGTATATTTCATCATCTTTTTTTTTTTCTTGATATAGGTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCGGTAATGTAGATTGAGCTGTTTTTTATATAGTCAGACCTCTTTATAACAACGTTGTTTGTGAGGATATTTTCTGACATCTATAGTGAAATGATAGGGTAAGGTGTATACATATTGTATCCCTATCTCTATCTCGTGGAGATAGTGAGGTTGAGTTTGAAAGATGCTTAGCTCAAAATAACATCAAAATAATGTGATAAATTGAAGCAAAGAACGATACGTGATAAGAAAAATCGAAGGGCAAGATGAAGAGTTAGTTTCACGCAGAGTTGGTTGTTACATACAAACGTTGTTATAGAGAAGTCTGACTGTAGTGTTTCGCTATAACTTTGTGGTTGATTAGAGTAGATTATATGTTTATAATTTTCTTGTTAAATTTTGAAGATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAAT</genome_strand>
        <mrna_strand>TTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA..............................................................................................................................................................................GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTNGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301861" ref_strand="-" ref_description="SGN-E301861 [cLEW-25-M3]">
      <seq>aattttcagctcaatatgatgattttgactcatttaagttgttcgtgattgtgaatgcaatagtatgtgcatatcttgctcttactctaccattttccatctttcatattatgaggagcagagcaggaaaaagtcggatcttgctcatcttccttgacgcgataatgctggttcttctcacatctggagcctctgcagcagctgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtaaaccgatttctgccaacgatttgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttctcaagctgtcgcgatatccaggcggataaatcaatcgctgtttacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="64965" stop="63415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64665" g_stop="64629" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174">
            <donor d_prob="0.870" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64331" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="161" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63949" g_stop="63715" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="399" r_length="238" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E301861" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64665" e_stop="64629"/>
          <exon e_start="64454" e_stop="64331"/>
          <exon e_start="63949" e_stop="63715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTCAGCTCAATATGATGATTTTGACTCATTTAAGTATGTCCATCTATAGAAACTACACATTTTCTATATTTTGAATGATTGATACAGTCTCGGAACTACAAGTTTCAAAAGTCTTTCTTTCTTAAACTTCGTATTCAGGTCAAACTACTTCATATAATTAACACAGAGGGAGTATATTTCATCATCTTTTTTTTTTTCTTGATATAGGTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCGGTAATGTAGATTGAGCTGTTTTTTATATAGTCAGACCTCTTTATAACAACGTTGTTTGTGAGGATATTTTCTGACATCTATAGTGAAATGATAGGGTAAGGTGTATACATATTGTATCCCTATCTCTATCTCGTGGAGATAGTGAGGTTGAGTTTGAAAGATGCTTAGCTCAAAATAACATCAAAATAATGTGATAAATTGAAGCAAAGAACGATACGTGATAAGAAAAATCGAAGGGCAAGATGAAGAGTTAGTTTCACGCAGAGTTGGTTGTTACATACAAACGTTGTTATAGAGAAGTCTGACTGTAGTGTTTCGCTATAACTTTGTGGTTGATTAGAGTAGATTATATGTTTATAATTTTCTTGTTAAATTTTGAAGATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTC-AGCTGTCGCGATATCCAGGC-GATAAATCAAT-GCTGTTTACATTG</genome_strand>
        <mrna_strand>AATTTTCAGCTCAATATGATGATTTTGACTCATTTAA..............................................................................................................................................................................GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTAAACCGATTTCTGCCAACGATTTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAAGCTGTCGCGATATCCAGGCGGATAAATCAATCGCTGTTTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311112" ref_strand="+" ref_description="SGN-E311112 [cLEZ-16-I18]">
      <seq>aatcttaatagatacttgagccatcgaaaaaacgaatgatgaaggcggtatcagttgaatctggagaagcatcaaaggctaaaggtcatggagttaacagaggactctctgtatttgatcttgttcttcgtattgttgcgattgttggtaccttagctggagctgtagcaatgggaactgctgaacaaactcttccttttgccacacaacttgtgcaattttcagctcaatatgatgattttgactcatttaagttgttcgtgattgtgaatgcaatagtatgtgcatatcttgctcttactctaccattttccatctttcatattatgaggagcagagcaggaaaaagtcggatcttgctcatcttccttgacgcgataatgctggttcttctcacatctggagcctctgcagcagctgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtataccgatttctgccaacgatctgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="65181" stop="63460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64881" g_stop="64629" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64331" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="377" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63949" g_stop="63760" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="567" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E311112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64881" e_stop="64629"/>
          <exon e_start="64454" e_stop="64331"/>
          <exon e_start="63949" e_stop="63760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAAGTATGTCCATCTATAGAAACTACACATTTTCTATATTTTGAATGATTGATACAGTCTCGGAACTACAAGTTTCAAAAGTCTTTCTTTCTTAAACTTCGTATTCAGGTCAAACTACTTCATATAATTAACACAGAGGGAGTATATTTCATCATCTTTTTTTTTTTCTTGATATAGGTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCGGTAATGTAGATTGAGCTGTTTTTTATATAGTCAGACCTCTTTATAACAACGTTGTTTGTGAGGATATTTTCTGACATCTATAGTGAAATGATAGGGTAAGGTGTATACATATTGTATCCCTATCTCTATCTCGTGGAGATAGTGAGGTTGAGTTTGAAAGATGCTTAGCTCAAAATAACATCAAAATAATGTGATAAATTGAAGCAAAGAACGATACGTGATAAGAAAAATCGAAGGGCAAGATGAAGAGTTAGTTTCACGCAGAGTTGGTTGTTACATACAAACGTTGTTATAGAGAAGTCTGACTGTAGTGTTTCGCTATAACTTTGTGGTTGATTAGAGTAGATTATATGTTTATAATTTTCTTGTTAAATTTTGAAGATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCT</genome_strand>
        <mrna_strand>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA..............................................................................................................................................................................GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612613" ref_strand="+" ref_description="SGN-E612613 [62378]">
      <seq>atttggttgctttccctgctttcttcacttatggtctggagtccacaataaaaccaagacataaaaagatagctgagaagggcttaaaatgttcccttgcatggcttcttaattgttctgatgagaaatttgatcagcggatgagttacgacattattgacatggaagaaatggaagtaggtgaatcatccttcgatatgaatactctactggagcccagaaatgatgaatcagcctctgattacgacgatgattacagtgaagacgacaatgtatagactatcaagtggatgttctgttcaccccccagaatatgtaaatgctaactatttcaaattttctgagttttgaatggccatgaagcaatggggtttattaaactgaatatagaaaggggatataatgattgttgattggtcccaatttctgaaatgaatcttagaagttagaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="67181" stop="66120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66881" g_stop="66420" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E612613" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66881" e_stop="66420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGATATACTGATTGTTG-TTGGTCCCAATTTCTGAAATGCATCTTAGAAGTTAGAACCTT</genome_strand>
        <mrna_strand>ATTTGGTTGCTTTCCCTGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGGCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTACTGGAGCCCAGAAATGATGAATCAGCCTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTA-TCAAGTGGATGTTCTGTTCAC-CCCCCAGAATATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAA----G-CAATGGGGTTTATTAAACTGAATATA-GAAAGGGGATATAATGATTGTTGATTGGTCCCAATTTCTGAAATGAATCTTAGAAGTTAGAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551040" ref_strand="+" ref_description="SGN-E551040 [TUS-54-O8]">
      <seq>gatgtccccaggtacttgcactaaatctcgacattatgaagaagagttttgagtatttcaaaactacaatggctaggcctttggaagatttggtcgctttcccagctttcttcacttatggtctggagtccacaataaaaccaagacataaaaagatagctgagaaggccttaaaatgttcccttgcatggcttcttaattgttctgatgagaaatttgatcagcggatgagttacgacattattgacatggaagaaatggaagtaggtgaatcatccttcgatatgaatactctattggagcccagaaatgatgaatcagcttctgattacgacgatgattacagtgaagacgacaatgtatagactactcaagtggatgttctgttcactcccccagagtatgtaaatgctaactatttcaaattttctgagttttgaatggccatgaaggtggccaatggggtttatcaaactgaatataggaagggggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="67268" stop="66174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66968" g_stop="66474" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E551040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66968" e_stop="66474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGATA</genome_strand>
        <mrna_strand>GATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688804" ref_strand="+" ref_description="SGN-E688804 [t3_tus_54_O08]">
      <seq>cgtgggatgtccccaggtacttgcactaaatctcgacattatgaagaagagttttgagtatttcaaaactacaatggctaggcctttggaagatttggtcgctttcccagctttcttcacttatggtctggagtccacaataaaaccaagacataaaaagatagctgagaaggccttaaaatgttcccttgcatggcttcttaattgttctgatgagaaatttgatcagcggatgagttacgacattattgacatggaagaaatggaagtaggtgaatcatccttcgatatgaatactctattggagcccagaaatgatgaatcagcttctgattacgacgatgattacagtgaagacgacaatgtatagactactcaagtggatgttctgttcactcccccagagtatgtaaatgctaactatttcaaattttctgagttttgaatggccatgaaggtggccaatggggtttatcaaactgaatataggaagggggatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="67273" stop="66172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66973" g_stop="66475" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="500" polyA_stop="517"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E688804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66973" e_stop="66475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGAT</genome_strand>
        <mrna_strand>CGTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258028" ref_strand="+" ref_description="SGN-E258028 [cLEG-48-A13]">
      <seq>gcgtgggatgtccccaggtacttgcactaaatctcgacattatgaagaagagttttgagtatttcaaaactacaatggctaggcctttggaagatttggtcgctttcccagctttcttcacttatggtctggagtccacaataaaaccaagacataaaaagatagctgagaaggccttaaaatgttcccttgcatggcttcttaattgttctgatgagaaatttgatcagcggatgagttacgacattattgacatggaagaaatggaagtaggtgaatcatccttcgatatgaatactctattggagcccacaaatgatgaatcagcttctgattacgacgatgattacagtgaagacgacaatgtatagactactccagtggatgttctgttcactcccccacagtatgtaaatgctaactatttcaaattttctgagttttgaatgggcatgaaagtggccaatgggggttatcaaactgaatataggaaaggggagtataaaaaaaaaaaaaaaaaaatcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="67273" stop="66172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66974" g_stop="66477" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="522"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E258028" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66974" e_stop="66477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGG</genome_strand>
        <mrna_strand>GCGTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCACAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCCAGTGGATGTTCTGTTCACTCCCCCACAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGGCATGAAAGTGGCCAATGGGGGTTATCAAACTGAATATAGGAAAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420302" ref_strand="+" ref_description="SGN-E420302 [STM-31-C13]">
      <seq>tccctttttttcagttnaataaaccccatgttctcatggccattcaaaactcagaaaatttgaaatagttagcatttacatactctggggggtgaacagaacatccacttgatagtctatacattgtcgtcttcactgtaatcatcgtcgtaatcagaggctgattcatcatttctgggctccagtagagtattcatatcgaaggatgattcacctacttccatttcttccatgtcaataatgtcgtaactcatccgctgatcaaatttctcatcagaacaattaagaagccatgccagggaacattttaagcccttctcagcgatctttttatgtcttggttttatagtggactccagaccataagtgaagaaagcagggaaagcgaccaaatcttccaaaggccttgccattgtggttttgaaatactcaaaactctgcttcataatatcgagatttagagcaagtacctggggacatcccacgaccatttctctcacttgttccgaggaaaaccacatcccttgaggaaatcaacatgcttcactacaggtgctttactgaggctgataatctgtggcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="66219" stop="67374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66519" g_stop="67074" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="586" r_length="553" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-E420302" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66519" e_stop="67074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCCATTCAAAACTCAGAAAATTTGAAATAGTTAGCATTTACATACTCTGGGGGAGTGAACAGAACATCCACTTGAGTAGTCTATACATTGTCGTCTTCACTGTAATCATCGTCGTAATCAGAAGCTGATTCATCATTTCTGGGCTCCAATAGAGTATTCATATCGAAGGATGATTCACCTACTTCCATTTCTTCCATGTCAATAATGTCGTAACTCATCCGCTGATCAAATTTCTCATCAGAACAATTAAGAAGCCATGCAAGGGAACATTTTAAGGCCTTCTCAGCTATCTTTTTATGTCTTGGTTTTATTGTGGACTCCAGACCATAAGTGAAGAAAGCTGGGAAAGCGACCAAATCTTCCAAAGGCCTAGCCATTGTAGTTTTGAAATACTCAAAACTCTTCTTCATAATGTCGAGATTTAGTGCAAGTACCTGGGGACATCCCACGACCATTTCTCTCACTTGTTCCGAGGAAAAACCACATTCCTTGAGGAAATCAACATGCTTCACAACAGGTGCTTTACTGAGGCTGATAATCTGTGGCATCTT</genome_strand>
        <mrna_strand>TCATGGCCATTCAAAACTCAGAAAATTTGAAATAGTTAGCATTTACATACTCTGGGGG-GTGAACAGAACATCCACTTGA-TAGTCTATACATTGTCGTCTTCACTGTAATCATCGTCGTAATCAGAGGCTGATTCATCATTTCTGGGCTCCAGTAGAGTATTCATATCGAAGGATGATTCACCTACTTCCATTTCTTCCATGTCAATAATGTCGTAACTCATCCGCTGATCAAATTTCTCATCAGAACAATTAAGAAGCCATGCCAGGGAACATTTTAAGCCCTTCTCAGCGATCTTTTTATGTCTTGGTTTTATAGTGGACTCCAGACCATAAGTGAAGAAAGCAGGGAAAGCGACCAAATCTTCCAAAGGCCTTGCCATTGTGGTTTTGAAATACTCAAAACTCTGCTTCATAATATCGAGATTTAGAGCAAGTACCTGGGGACATCCCACGACCATTTCTCTCACTTGTTCCGAGG-AAAACCACATCCCTTGAGGAAATCAACATGCTTCACTACAGGTGCTTTACTGAGGCTGATAATCTGTGGCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406039" ref_strand="+" ref_description="SGN-E406039 [PPI-2-B21]">
      <seq>gttttcatcttcagaatatgaaggtcattagttataaccgcatcattaatcccagttttttgctcataaatcatgagttgccttccaacacgttccatcgaccccggttaatatccacttcagctccaagtatttcaagtttcaatatgaagaaaaaggacttgatgatgagattaccgtgctgctttactacgagagctgctctttcatcttcagtgaagacagacacttacagtggaagtaagaaacaaaagagctcatctttctacactcatcctagtttattagagatgaagaatgagaaggcagccaaccgtgtacgtgtttatgaattcttgagaggcattggcatcgtacctgatgagctcgatggattagagcttcctgtgactgtggaggtcatgagagaacgtgtggactttcttcacaaattgggactcacaattgaagatattaacaactatcctcttgttctgggatgcagtgtgaagaaaaacatgattcctgtgcttgattatctgggcaaactgggtgttagaaaatccaccttgacagactntttgcggcggtacccacaagttctacatgcaagtgtggtggtagaccttgctccagttgtgaaatatcttcaaggcatggatattaaaccaaatgatattccgcgagtactggagaaatatcctgagtgntngggtttcaagcttgagggccnaatgagtacatcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="68483" stop="67155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68183" g_stop="67455" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E406039" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68183" e_stop="67455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATCTTCAGAATATGAAGGTCATTAGTTATAACCGCATCATTAATCCCAGTTTTTTGCTCATAAATCATGAATTGCCTTCCAACATGTTCCATCGACCCCGGTTAATATCCACTTCAGCTCCAAGTATTTCAAGTTTCAATATGAGGAAAAATGACTTGATGATGAGATTACCGTGCTGCTTTGCTACGAGAGCTGCTCTTTCATCTTCAGTGAAGACAGACACTTCCAGTGGAAGTAAGAAACAAAAGAGCTCATCTTTCTACACTCATCCTAGTTTATTAGAGATGAAGAATGAGAAGGCAGCCAACCGTGTACGTGTTTATGAATTCTTGAGAAGCATTGGCATTGTACCTGATGAGCTCGATGGATTAGAGCTTCCTGTGACTGTGGAGGTCATGAGAGAACGCGTGGACTTTCTTCACAAATTGGGACTCACTATTGAAGATATTAACAACTATCCTCTTGTTCTGGGATGCAGTGTGAAGAAAAACATGATTCCTGTGCTTGATTATCTGGGCAAATTGGGTGTTAGAAAATCCACCTTGACAGACTTTTTGCGGCGGTACCCACAAGTTCTACATGCAAGTGTGGTGGTAGACCTTGCTCCAGTTGTGAAATATCTTCAAGGCATGGATATTAAACCAAATGATATTCCACGAGTACTGGAGAAATATCCTGAAGTGTTGGGGTTCAAGCTTGAGGGCACAATGAGTACATCAGTTG</genome_strand>
        <mrna_strand>GTTTTCATCTTCAGAATATGAAGGTCATTAGTTATAACCGCATCATTAATCCCAGTTTTTTGCTCATAAATCATGAGTTGCCTTCCAACACGTTCCATCGACCCCGGTTAATATCCACTTCAGCTCCAAGTATTTCAAGTTTCAATATGAAGAAAAAGGACTTGATGATGAGATTACCGTGCTGCTTTACTACGAGAGCTGCTCTTTCATCTTCAGTGAAGACAGACACTTACAGTGGAAGTAAGAAACAAAAGAGCTCATCTTTCTACACTCATCCTAGTTTATTAGAGATGAAGAATGAGAAGGCAGCCAACCGTGTACGTGTTTATGAATTCTTGAGAGGCATTGGCATCGTACCTGATGAGCTCGATGGATTAGAGCTTCCTGTGACTGTGGAGGTCATGAGAGAACGTGTGGACTTTCTTCACAAATTGGGACTCACAATTGAAGATATTAACAACTATCCTCTTGTTCTGGGATGCAGTGTGAAGAAAAACATGATTCCTGTGCTTGATTATCTGGGCAAACTGGGTGTTAGAAAATCCACCTTGACAGACTNTTTGCGGCGGTACCCACAAGTTCTACATGCAAGTGTGGTGGTAGACCTTGCTCCAGTTGTGAAATATCTTCAAGGCATGGATATTAAACCAAATGATATTCCGCGAGTACTGGAGAAATATCCTGAGTGNTNGGGTTTCAAGCTTGAGGGCCNAATGAGTACATCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420301" ref_strand="+" ref_description="SGN-E420301 [STM-31-C13]">
      <seq>gttttcatcttcagaatatgaaggtcattagttataaccgcatcattaatcccagttttttgctcataaatcatgagttgccttccaacacgttccatcgaccccggttaatatccacttcagctccaagtatttcaagtttcaatatgaagaaaaaggacttgatgatgagattaccgtgctgctttactacgagagctgctctttcatcttcagtgaagacagacacttacagtggaagtaagaaacaaaagagctcatctttctacactcatcctagtttattagagatgaagaatgagaaggcagccaaccgtgtacgtgtttatgaattcttgagaggcattggcatcgtacctgatgagctcgatggattagagcttcctgtgactgtggaggtcatgagagaacgtgtggactttcttcacaaattgggactcacaattgaagatattaacaactatcctcttgttctgggatgcagtgtgaagaaaaacatgattcctgtgcttgattatctgggcaaactgggtgttagaaaatccaccttgacagactttttgcggcggtacccacaagttctacatgcaagtgtggtggtagaccttgctccagttgtgaaatatcttcaaggcatggatattaaaccaaatgatattccgcgagtactggagaaatatcctgaagtgttgggtttcaagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="68483" stop="67178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68183" g_stop="67478" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E420301" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68183" e_stop="67478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATCTTCAGAATATGAAGGTCATTAGTTATAACCGCATCATTAATCCCAGTTTTTTGCTCATAAATCATGAATTGCCTTCCAACATGTTCCATCGACCCCGGTTAATATCCACTTCAGCTCCAAGTATTTCAAGTTTCAATATGAGGAAAAATGACTTGATGATGAGATTACCGTGCTGCTTTGCTACGAGAGCTGCTCTTTCATCTTCAGTGAAGACAGACACTTCCAGTGGAAGTAAGAAACAAAAGAGCTCATCTTTCTACACTCATCCTAGTTTATTAGAGATGAAGAATGAGAAGGCAGCCAACCGTGTACGTGTTTATGAATTCTTGAGAAGCATTGGCATTGTACCTGATGAGCTCGATGGATTAGAGCTTCCTGTGACTGTGGAGGTCATGAGAGAACGCGTGGACTTTCTTCACAAATTGGGACTCACTATTGAAGATATTAACAACTATCCTCTTGTTCTGGGATGCAGTGTGAAGAAAAACATGATTCCTGTGCTTGATTATCTGGGCAAATTGGGTGTTAGAAAATCCACCTTGACAGACTTTTTGCGGCGGTACCCACAAGTTCTACATGCAAGTGTGGTGGTAGACCTTGCTCCAGTTGTGAAATATCTTCAAGGCATGGATATTAAACCAAATGATATTCCACGAGTACTGGAGAAATATCCTGAAGTGTTGGGGTTCAAGCTTGA</genome_strand>
        <mrna_strand>GTTTTCATCTTCAGAATATGAAGGTCATTAGTTATAACCGCATCATTAATCCCAGTTTTTTGCTCATAAATCATGAGTTGCCTTCCAACACGTTCCATCGACCCCGGTTAATATCCACTTCAGCTCCAAGTATTTCAAGTTTCAATATGAAGAAAAAGGACTTGATGATGAGATTACCGTGCTGCTTTACTACGAGAGCTGCTCTTTCATCTTCAGTGAAGACAGACACTTACAGTGGAAGTAAGAAACAAAAGAGCTCATCTTTCTACACTCATCCTAGTTTATTAGAGATGAAGAATGAGAAGGCAGCCAACCGTGTACGTGTTTATGAATTCTTGAGAGGCATTGGCATCGTACCTGATGAGCTCGATGGATTAGAGCTTCCTGTGACTGTGGAGGTCATGAGAGAACGTGTGGACTTTCTTCACAAATTGGGACTCACAATTGAAGATATTAACAACTATCCTCTTGTTCTGGGATGCAGTGTGAAGAAAAACATGATTCCTGTGCTTGATTATCTGGGCAAACTGGGTGTTAGAAAATCCACCTTGACAGACTTTTTGCGGCGGTACCCACAAGTTCTACATGCAAGTGTGGTGGTAGACCTTGCTCCAGTTGTGAAATATCTTCAAGGCATGGATATTAAACCAAATGATATTCCGCGAGTACTGGAGAAATATCCTGAAGTGTTGGGTTTCAAGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693961" ref_strand="+" ref_description="SGN-E693961 [LH_Ea02K23](-)">
      <seq>cttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtaatcccagcgttgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccgttgttggttgtgaagtcgaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaagatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctatgctgttttggctaacaaaagtaaggttaatgtacagcttgcagtcataaagtgaactatttaataaatcttcttgctggatgattgcatatgattgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaagaaagccattgtaagcttgaaagtgaaaagtagctcagatgaatgaaactattatttgagataactgcccttttggggttataattggataattagtgcatctgttgactataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75752" stop="71194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75452" g_stop="74690" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74689" i_stop="74583" i_length="107">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74582" g_stop="74564" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="781" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E693961" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75452" e_stop="74690"/>
          <exon e_start="74582" e_stop="74564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGTGCTTCTGCTATGCCAAAACTAAAGGGGTCGTTTTGTTTGGAGCAAGTTATACTAGGATTAATTAGATCTCGAAACAAGTATGGAACATTGAGTGAAAAGTCAAAATAAACAACAAAAG</genome_strand>
        <mrna_strand>CTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTAATCCCAGCGTTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCGTTGTTGGTTGTGAAGTCGAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAGATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTATGCTGTTTTGGCTAACAAAAGTAAGGTTAATGTACAGCTTGCAGTCATAAAGTGAACTATTTAATAAATCTTCTTGCTGGATGATTGCATATGA-TTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATTGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATAATTGGATAATTAGTGCATCTGTTGACTA...........................................................................................................TAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350643" ref_strand="+" ref_description="SGN-E350643 [cTOS-7-C19]">
      <seq>cctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcantaagtgaactacttaaataatcttcttgctgggatattgcatatgatttgtactgtatttgtattcaattacagagtaataattgtatattnccctaagaaagcatagtaagctttgaagtgaaagtagctcagatgaatgaactattattgagatactgcccttttgggttatattttgataatagtgcatctggtgacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75794" stop="74386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75494" g_stop="74682" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E350643" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75494" e_stop="74682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</genome_strand>
        <mrna_strand>CCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCANTAAGTGAACTACTTAAATAATCTTCTTGCTGGGATATTGCATATGATTTGTACTGTATTTGTATTC-AATTACAGAGTAATAATTGT-ATATTNCCCTAAGAAAG-CATAGTAAGCTTTGAAGTG-AAAGTAGCTCAGATGAATG-AACTATTA-TTGAGAT-ACTGCCCTTTT-GGGTTATATTTTGATAA-TAGTGCATCTGGTGACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617166" ref_strand="+" ref_description="SGN-E617166 [90641]">
      <seq>gttaagggctaaacgtgctgcaaagaataaagaccagcagaatataactgctttggaggtttttgttatcggagcctttgctaaacttggagcaactgtctgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaacgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcatgaaggattcagatgcttctatcagggaatgcgcacaaagatagtgcagagcgtctttgcagcctccgtacttttcatggtgaaggaagagctcgtcaaagtctatgctgttttggctaacaagagtaaggttaatgtatagcttgcagtcataaagtgaactatttaataaatcttcttgctgcataattgcatatgattgtactgtattcaaattacaaagtaataattgtaatattccctaaagaaagccattgtaagcttgaaagtgaaaagtagctcaggtgaatgaaactattatttgagataactttgtcctttttggttatattttgataaatagtgcatctgttgactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75569" stop="74386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75269" g_stop="74690" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="586"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E617166" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75269" e_stop="74690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAAC-TGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTT</genome_strand>
        <mrna_strand>GTTAAGGGCTAAACGTGCTGCAAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAGGTTTTTGTTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTCTGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAACGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCATGAAGGATTCAGATGCTTCTATCAGGGAATGCGCACAAAGATAGTGCAGAGCGTCTTTGCAGCCTCCGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTATGCTGTTTTGGCTAACAAGAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTATTTAATAAATCTTCTTGCTGCATAATTGCATATGA-TTGTAC------TGTATTCAAATTACAAAGTAATAATTGTAATATTCCCTAAAGAAAGCCATTGTAAGCTTGAAAGTGAAAAGTAGCTCAGGTGAATGAAACTATTATTTGAGATAACTTTGTCCTTTTTGGTTATATTTTGATAAATAGTGCATCTGTTGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573745" ref_strand="+" ref_description="SGN-E573745 [33105]">
      <seq>caaaaaaaggaaacctattaaagaagcttctcaaagtgtcttaacagcttcttccttggaagtacaactcgctgagcttgattcattgaaacctcatccttacgggacattgcaagcagcacgggaagtttataatgaatcaggagttacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcaaagaataaagaccagcagaatataactgctttggaggtttttgttatcggagcctttgctaaacttggagcaactgtctgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaacgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcatgaaggattcagatgcttctatcagggaatgcgcacaaagatagtgcagagcgtctttgcagcctccgtacttttcatggtgaaggaagagctcgtcaaagtctatgctgttttggctaacaagagtaaggttaatgtatagcttgcagtcataaagtgaactatttaataaatcttcttgctgcataattgcatatgattgtactgtattcaaattacaaagtaataattgtaatattccctaaagaaagcattgtaagcttgaaagtgaaaagtaggctcaggtgaaatgaaactattatttgagataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75806" stop="74435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75507" g_stop="74735" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="766" r_length="766" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E573745" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75507" e_stop="74735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTA-GCTCAGATG-AATGAAACTATTATTTGAGATAACT</genome_strand>
        <mrna_strand>CAAAAAAAGGAAACCTATT-AAAGAAGCTTCTCAAAGTGTCTTAACAGCTTCTTCCTTGGAAGTACAACTCGCTGAGCTTGATTCATTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGGGAAGTTTATAATGAATCAGGAGTTACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCAAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAGGTTTTTGTTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTCTGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAACGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCATGAAGGATTCAGATGCTTCTATCAGGGAATGCGCACAAAGATAGTGCAGAGCGTCTTTGCAGCCTCCGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTATGCTGTTTTGGCTAACAAGAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTATTTAATAAATCTTCTTGCTGCATAATTGCATATGA-TTGTAC------TGTATTCAAATTACAAAGTAATAATTGTAATATTCCCTAAAGAAAG-CATTGTAAGCTTGAAAGTGAAAAGTAGGCTCAGGTGAAATGAAACTATTATTTGAGATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349497" ref_strand="+" ref_description="SGN-E349497 [cTOS-1-K1]">
      <seq>cctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtatattcccctaagaaagccatagntagcttgaaagtgaaagtagctcagatgaaatgaactattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75794" stop="74443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75494" g_stop="74743" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="750" r_length="750" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E349497" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75494" e_stop="74743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTG</genome_strand>
        <mrna_strand>CCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGT-ATATTCCCCTAAGAAAGCCATAGNTAGCTTGAAAGTG-AAAGTAGCTCAGATGAAATGAACTATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221727" ref_strand="+" ref_description="SGN-E221727 [cLEL-10-P20](-)">
      <seq>ttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaagaaagccatagtaagcttgaaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75509" stop="71194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75209" g_stop="74758" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E221727" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75209" e_stop="74758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAA</genome_strand>
        <mrna_strand>TTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221820" ref_strand="+" ref_description="SGN-E221820 [cLEL-10-P20](-)">
      <seq>attgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaagaaagccatagtaagcttgaaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75458" stop="71194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75158" g_stop="74758" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E221820" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75158" e_stop="74758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAA</genome_strand>
        <mrna_strand>ATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326731" ref_strand="+" ref_description="SGN-E326731 [cTOC-25-C19]">
      <seq>ttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75758" stop="74497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75458" g_stop="74794" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E326731" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75458" e_stop="74794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCC</genome_strand>
        <mrna_strand>TTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351188" ref_strand="+" ref_description="SGN-E351188 [cTOS-6-A20]">
      <seq>tcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75839" stop="74505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75539" g_stop="74805" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E351188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75539" e_stop="74805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCC</genome_strand>
        <mrna_strand>TCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349265" ref_strand="+" ref_description="SGN-E349265 [cTOS-2-B10]">
      <seq>cctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75794" stop="74556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75494" g_stop="74856" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E349265" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75494" e_stop="74856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATG</genome_strand>
        <mrna_strand>CCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273394" ref_strand="+" ref_description="SGN-E273394 [cLEN-3-L20]">
      <seq>tcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggaagaaattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75895" stop="74644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75595" g_stop="74944" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E273394" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75595" e_stop="74944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGG-AG--ATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTG</genome_strand>
        <mrna_strand>TCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAAGAAATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352858" ref_strand="+" ref_description="SGN-E352858 [cTOS-11-M6]">
      <seq>tcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75776" stop="74680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75476" g_stop="74980" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E352858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75476" e_stop="74980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTT</genome_strand>
        <mrna_strand>TCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273396" ref_strand="+" ref_description="SGN-E273396 [cLEN-3-L24]">
      <seq>tcagggaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagggatgccagcattgatcatggggtctaatccctcgattcagttcatgattattgagagtttgtccaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgatggttgtgaagtcaaggcttcaagcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75895" stop="74824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75595" g_stop="75124" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E273396" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75595" e_stop="75124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGC</genome_strand>
        <mrna_strand>TCAGGGAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGGGATGCCAGCATTGATCATGGGGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCCAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGATGGTTGTGAAGTCAAGGCTTCAAGCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E569105" ref_strand="+" ref_description="SGN-E569105 [13493]">
      <seq>ctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggccaaaaaggaaaccctattaaaagaagcttctcaaagtgtcttaacagcttcttccttggaagtacaactcgctgagcttgattcattgaaacctcatccttacgggacattgcaagcagcacgggaagtttataatgaatcaggagttacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcaaagaataaagaccagcagaatataactgctttggaggtttttgttatcggagcctttgctaaacttggagcaactgtctgcacatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75870" stop="74860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75570" g_stop="75160" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E569105" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75570" e_stop="75160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATC</genome_strand>
        <mrna_strand>CTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCCAAAAAGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTAACAGCTTCTTCCTTGGAAGTACAACTCGCTGAGCTTGATTCATTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGGGAAGTTTATAATGAATCAGGAGTTACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCAAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAGGTTTTTGTTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTCTGCACATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407207" ref_strand="+" ref_description="SGN-E407207 [PPI-6-I12]">
      <seq>cggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggttgttagaagcgaaggcttgccagggctttacagtggcctgaagccttctctgcttggaactgccgtgtcacagggtgtctactactatttttaccaggtttttaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttttagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaaaggaaaccctattaaaagaagcttctcaaagtgtcttaacagcttcttccttggaagtacaactcgctgagcttgattcattgaaacctcatccttacgggacattgcaagcagcacgggaagtttataatgaatcaggagttacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcaaagaataaagaccagcagaatataactgctnntggaagtttttgtaatcggagcctttgctaaacttggagcaactgtctgcacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="76174" stop="74862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75874" g_stop="75162" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E407207" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75874" e_stop="75162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCT-TTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATA</genome_strand>
        <mrna_strand>CGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTTGTTAGAAGCGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTTGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTTAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTTTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAAGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTAACAGCTTCTTCCTTGGAAGTACAACTCGCTGAGCTTGATTCATTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGGGAAGTTTATAATGAATCAGGAGTTACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCAAAGAATAAAGACCAGCAGAATATAACTGCTNNTGGAAGTTTTTGTAATCGGAGCCTTTGCTAAACTTGGAGCAACTGTCTGCACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404538" ref_strand="+" ref_description="SGN-E404538 [PPC-14-I20]">
      <seq>caaggctgaagctatagcagctgcaaataagaaaagaagccgaagggatggttctgttgggatgctctcttggctcgttgtggcagctcttgcaagttcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaaaggaaaccttattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacaactcgctgaacttgattcgttgaaacctcatccttacaggacattgcaagcagcacgagaggtttataatgaatcaagagttacaagattctggaaaggagtcatcccagcattgatcatggtatctaatccctcgattcagttcatgattatctgagagtttgtcgaagcagctaagggctaaacgtgctgcaaagaataaagaccagcagaatataactgctttggaaagttttgtaatcagagcctttgctaaacttggagcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75992" stop="74873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75692" g_stop="75173" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E404538" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75692" e_stop="75173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTAT-TGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACT</genome_strand>
        <mrna_strand>CAAGGCTGAAGCTATAGCAGCTGCAAATAAGAAAAGAAGCCGAAGGGATGGTTCTGTTGGGATGCTCTCTTGGCTCGTTGTGGCAGCTCTTGCAAGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAAGGAAACCTTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAACTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACAGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAAGAGTTACAAGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTATCTAATCCCTCGATTCAGTTCATGATTATCTGAGAGTTTGTCGAAGCAGCTAAGGGCTAAACGTGCTGCAAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAAGTTTTGTAATCAGAGCCTTTGCTAAACTTGGAGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690121" ref_strand="+" ref_description="SGN-E690121 [LH_Ea02K23]">
      <seq>cacgttacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatactgggaagtttgtgtttctggcagaactatcgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgtgtcacagggtgtctactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgtagggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcacgagtcacaggattctggaaaggagtaatcccagcgttgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77753" stop="74951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77460" g_stop="77386" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="76022" i_length="1364">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75251" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="845" r_length="771" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E690121" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77460" e_stop="77386"/>
          <exon e_start="76021" e_stop="75251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCT</genome_strand>
        <mrna_strand>CACGT-TACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCAGAACTATCGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTAGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCACGAGTCACAGGATTCTGGAAAGGAGTAATCCCAGCGTTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706966" ref_strand="+" ref_description="SGN-E706966 [FA31CG04]">
      <seq>cagtatagactgaacaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcgatacacggcagcaaactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgagacacagggtgactactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaagatcactaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcacactcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaaataccgctcgctgaacttgattcctggaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcatgagtcacaggattctggaaaggagtcatcccagcattgatcatggtgactaatccctcgattcagttcatgattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="76280" stop="74986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75980" g_stop="75286" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E706966" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75980" e_stop="75286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTG</genome_strand>
        <mrna_strand>CAGTATAGACTGAACAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCGATACACGGCAGCAAACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGAGACACAGGGTGACTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAAGATCACTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCACACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAATACCGCTCGCTGAACTTGATTCCTGGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCATGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGACTAATCCCTCGATTCAGTTCATGATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479016" ref_strand="+" ref_description="SGN-E479016 [cSTD-8-O7]">
      <seq>cataaacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatattgggaagtttgtgtttctggcacaaatagtctttacgctgaacagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggttgttagaagcgaaggcttgccagggctttacagtggcctgaagccttctctgcttggaactgccgtgtcacaggggtgtctactactatttttaccaggtttttaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatgggttctgtttggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttttagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaaaggaaaccctattaaaagaagcttctcaaagtgtcttaacagcttcttccttggaagtacaactcgctgagcttgattcattgaaacctcatccttacgggacattgcaagcacacggggaagtttataatgaatcangagttacaggattctggaaaggagtcatcccagcattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77758" stop="75023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77458" g_stop="77386" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="76022" i_length="1364">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75323" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="772" r_length="699" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E479016" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77458" e_stop="77386"/>
          <exon e_start="76021" e_stop="75323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACA-GGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGAT-GGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATC</genome_strand>
        <mrna_strand>CATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCACAA--ATAGTCTTTACGCTGAACAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTTGTTAGAAGCGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTTGGAACTGCCGTGTCACAGGGGTGTCTACTACTATTTTTACCAGGTTTTTAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGGTTCTGTTTGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTTTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAAGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTAACAGCTTCTTCCTTGGAAGTACAACTCGCTGAGCTTGATTCATTGAAACCTCATCCTTACGGGACATTGCAAGCACACGGGGAAGTTTATAATGAATCANGAGTTACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407360" ref_strand="+" ref_description="SGN-E407360 [PPI-6-H12]">
      <seq>aaacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatattgggcatgccaattattgagatggcatctcggtctgttagttgctgtgcagtatgatcactgtggcaggatctgtgtgttatgcaatagaagtttgtgtttctggcacaaatagtctttacgctgaacagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggttgttagaagcgaaggcttgccagggctttacagtggcctgaagccttctctgcttggaactgccgtgtcacagggtgtctactactatttttaccaggtttttaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttttagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaaaggaaaccctattaaaagaagcttctcaaagtgtcttaacagctttctccttggaagtacaactcgctgagctggattcattgaaacctcatccttacgggacattgcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77755" stop="75090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77455" g_stop="77386" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77135" g_stop="77053" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="155" r_length="85" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="0.90"/>
            <acceptor a_prob="0.711" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76021" g_stop="75390" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="785" r_length="630" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E407360" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77455" e_stop="77386"/>
          <exon e_start="77135" e_stop="77053"/>
          <exon e_start="76021" e_stop="75390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATC--TGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGC</genome_strand>
        <mrna_strand>AAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATATTGG..........................................................................................................................................................................................................................................................GCATGCCAATTATTGAGATGGCATCTCGGTCTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTGTTATGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCACAA--ATAGTCTTTACGCTGAACAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTTGTTAGAAGCGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTTGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTTAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTTTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAAGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTAACAGCTTTCTCCTTGGAAGTACAACTCGCTGAGCTGGATTCATTGAAACCTCATCCTTACGGGACATTGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339464" ref_strand="+" ref_description="SGN-E339464 [cTOF-4-F16]">
      <seq>actgtttcataaacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatactgggcatgccaactattgggatggcatctcggtttgttagttgctgtgcagtatgatcactgtggcaggatctgtgttctgcaatagaagtttgtgtttctggcagaaccattgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgtgtcacagggtgtctactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77765" stop="75214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77465" g_stop="77386" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77135" g_stop="77053" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76021" g_stop="75514" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="671" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E339464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77465" e_stop="77386"/>
          <exon e_start="77135" e_stop="77053"/>
          <exon e_start="76021" e_stop="75514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCG</genome_strand>
        <mrna_strand>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG..........................................................................................................................................................................................................................................................GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443796" ref_strand="+" ref_description="SGN-E443796 [cSTA-40-G15]">
      <seq>tttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatattgggaagtttgtgtttctggcacaaatagtctttacgctgaacagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggttgttagaagcgaaggcttgccagggctttacagtggcctgaagccttctctgcttggaactgccgtgtcacagggtgtctactactatttttaccaggtttttaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77746" stop="75233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77446" g_stop="77386" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="76022" i_length="1364">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.711" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75533" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="548" r_length="487" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E443796" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77446" e_stop="77386"/>
          <exon e_start="76021" e_stop="75533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACA</genome_strand>
        <mrna_strand>TTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATATTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCACAA--ATAGTCTTTACGCTGAACAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTTGTTAGAAGCGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTTGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTTAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469016" ref_strand="+" ref_description="SGN-E469016 [cSTB-10-M1]">
      <seq>atgatcactgtggcaggatctgcgtgttatacaatataagtttgtgtccctggcacaaatagtctttacgctgaacagtaaagactgaaaaatgtcaagtgccttgaataatgcgatctactcagccaggaggggcataatagcgcaaataatcacttaccccctccaaactgtcaatacacggcagcagactgatagggtctcgagagagggccgtgattatcgtggcaatgccctgtttcaaatcttacaggttgttagaagcgaaagcttgccagggctttacagtggcctgaagccttctctgcttggaactgctgtgtcacagggtgtctactactatttttaccaggtttttaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcaagaaatgtattgttgacaaaccctatatgggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77386" stop="75258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77086" g_stop="77053" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.711" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75558" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="498" r_length="462" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E469016" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77086" e_stop="77053"/>
          <exon e_start="76021" e_stop="75558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATCACTGTGGCAGGATCT--GTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCT</genome_strand>
        <mrna_strand>ATGATCACTGTGGCAGGATCTGCGTGTTATACAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTGTGTCCCTGGCACAA--ATAGTCTTTACGCTGAACAGTAAAGACTGAAAAATGTCAAGTGCCTTGAATAATGCGATCTACTCAGCCAGGAGGGGCATAATAGCGCAAATAATCACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGATAGGGTCTCGAGAGAGGGCCGTGATTATCGTGGCAATGCCCTGTTTCAAATCTTACAGGTTGTTAGAAGCGAAAGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTTGGAACTGCTGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTTAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAAGAAATGTATTGTTGACAAACCCTATATGGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719335" ref_strand="+" ref_description="SGN-E719335 [FC07CB09]">
      <seq>gatcactgtggcaggatctgtgttctgcaataaaccattgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacccggcatcagactgagagggtctccagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcgaaactgccgtgtcacagggtgtctactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataataaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtgacagctcttgcaggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77384" stop="75294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77084" g_stop="77053" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77052" i_stop="76002" i_length="1051">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76001" g_stop="75594" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="440" r_length="408" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E719335" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77084" e_stop="77053"/>
          <exon e_start="76001" e_stop="75594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTC</genome_strand>
        <mrna_strand>GATCACTGTGGCAGGATCTGTGTTCTGCAATA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACCCGGCATCAGACTGAGAGGGTCTCCAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGAAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAATAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGACAGCTCTTGCAGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337319" ref_strand="+" ref_description="SGN-E337319 [cTOE-7-L24]">
      <seq>aacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatactgggaagtttgtgtttctggcagaaccattgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgtgtcacagggtgtctactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77754" stop="75329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77454" g_stop="77386" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="76022" i_length="1364">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75629" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="462" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E337319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77454" e_stop="77386"/>
          <exon e_start="76021" e_stop="75629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATG</genome_strand>
        <mrna_strand>AACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255956" ref_strand="+" ref_description="SGN-E255956 [cLEG-35-A4]">
      <seq>gctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctccacagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccatggctttacaacagcctgaagccttctctgatcggaactgccgtgtcacaaggtgtctactactatatttaccaggttttcaagaacatggctgaggctatatcatctgcaaattaaaaaagaggccgaggggatggttctgttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="76249" stop="75330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75949" g_stop="75630" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E255956" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>320</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75949" e_stop="75630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGAT</genome_strand>
        <mrna_strand>GCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCCACAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCATGGCTTTACAACAGCCTGAAGCCTTCTCTGATCGGAACTGCCGTGTCACAAGGTGTCTACTACTATATTTACCAGGTTTTCAAGAACATGGCTGAGGCTATATCATCTGCAAATTAAAAAAGAGGCCGAGGGGATGGTTCTGTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331723" ref_strand="+" ref_description="SGN-E331723 [cTOD-7-F24]">
      <seq>tgtttcataaacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatactgggcatgccaactattgggatggcatctcggtttgttagttgctgtgcagtatgatcactgtggcaggatctgtgttctgcaatagaagtttgtgtttctggcagaaccattgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgtgtcacagggtgtctactactatttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77763" stop="75406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77463" g_stop="77386" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77135" g_stop="77053" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="161" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76021" g_stop="75706" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="477" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E331723" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77463" e_stop="77386"/>
          <exon e_start="77135" e_stop="77053"/>
          <exon e_start="76021" e_stop="75706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACC</genome_strand>
        <mrna_strand>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG..........................................................................................................................................................................................................................................................GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486040" ref_strand="+" ref_description="SGN-E486040 [cSTE-20-B2]">
      <seq>tgtttcatagacaaccattttgttaaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctgtattgggtaagatatctctgcccaaattcaactgatacagagtatatttttggatttttttttttacctaattctggtataccaacaattgagataacatctaggtttgatgatcttttgattagctaattgtatagttatcacctgtacacttgcacaaaaatattattgaaccttgatgttatctcagtgttggcatgcataaattgggtaaatttatgattgaatgtgtattttggtgttgtaccaaatccaggcatgccaattattgagatggcatctcggtctgttagttgctgtgcagtatgatcactgtggcaggatctgtgtgttatgcaatagaagtttgtgtttctggcacaaatagtctttacgctgaacagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctcccaactgtcaatacacggcagcagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77763" stop="75562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77463" g_stop="77053" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="0.90"/>
            <acceptor a_prob="0.711" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75862" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="570" r_length="158" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E486040" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77463" e_stop="77053"/>
          <exon e_start="76021" e_stop="75862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGAT---GAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATC--TGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTG</genome_strand>
        <mrna_strand>TGTTTCATAGACAACCA-TTTTGTTAAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTGTATTGGGTAAGATATCTCTGCCC-AAATTCAACTGATACAGAGTATATTTTTGGAT-TTTTTTTTTTACCTAATTCTGGTATACCAACAATTGAGATAACATCTAGGTTTGATGATCTTTTGATTAGCTAA-TTGTATAGTTATCACCTGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAATTATTGAGATGGCATCTCGGTCTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTGTTATGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCACAA--ATAGTCTTTACGCTGAACAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCCAACTGTCAATACACGGCAGCAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482065" ref_strand="+" ref_description="SGN-E482065 [cSTD-20-B2]">
      <seq>tgtttcatagacaaccattttgttaaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctgtattgggtaagatatctctgcccaaattcaactgatacagagtatatttttggatttttttttttacctaattctggtataccaacaattgagataacatctaggtttgatgatcttttgattagctaattgtatagttatcacctgtacacttgcacaaaaatattattgaaccttgatgttatctcagtgttggcatgcataaattgggtaaatttatgattgaatgtgtattttggtgttgtaccaaatccaggcatgccaattattgagatggcatctcggtctgttagttgctgtgcagtatgatcactgtggcaggatctgtgtgttatgcaatagaagtttgtgtttctggcacaaatagtctttacgctgaacagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgccacaataattacttaccccctccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77763" stop="75587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77463" g_stop="77053" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="0.90"/>
            <acceptor a_prob="0.711" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76021" g_stop="75887" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="545" r_length="133" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E482065" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77463" e_stop="77053"/>
          <exon e_start="76021" e_stop="75887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGAT---GAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATC--TGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAA</genome_strand>
        <mrna_strand>TGTTTCATAGACAACCA-TTTTGTTAAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTGTATTGGGTAAGATATCTCTGCCC-AAATTCAACTGATACAGAGTATATTTTTGGAT-TTTTTTTTTTACCTAATTCTGGTATACCAACAATTGAGATAACATCTAGGTTTGATGATCTTTTGATTAGCTAA-TTGTATAGTTATCACCTGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAATTATTGAGATGGCATCTCGGTCTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTGTTATGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCACAA--ATAGTCTTTACGCTGAACAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCCACAATAATTACTTACCCCCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486054" ref_strand="+" ref_description="SGN-E486054 [cSTE-20-F2]">
      <seq>tgtttcatagacaaccattttgttaaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctgtattgggtaagatatctctgcccaaattcaactgatacagagtatatttttggatttttttttttacctaattctggtataccaacaattgagataacatctaggtttgatgatcttttgattagctaattgtatagttatcacctgtacacttgcacaaaaatattattgaaccttgatgttatctccctgttggcatgcataaattgggtaaatttatgatttgaatgtgtattttggtgttgtaccaaatcccagcatgccaattattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77763" stop="76821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77463" g_stop="77121" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E486054" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77463" e_stop="77121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGAT---GAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGA-TTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTG</genome_strand>
        <mrna_strand>TGTTTCATAGACAACCA-TTTTGTTAAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTGTATTGGGTAAGATATCTCTGCCC-AAATTCAACTGATACAGAGTATATTTTTGGAT-TTTTTTTTTTACCTAATTCTGGTATACCAACAATTGAGATAACATCTAGGTTTGATGATCTTTTGATTAGCTAA-TTGTATAGTTATCACCTGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCCCTGTTGGCATGCATAAATTGGGTAAATTTATGATTTGAATGTGTATTTTGGTGTTGTACCAAATCCCAGCATGCCAATTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348051" ref_strand="+" ref_description="SGN-E348051 [cTOF-31-K12]">
      <seq>ttcacctccaacacttgttccttagtgtttttttttccttctaatcttcttcatatggttcccttctctctttgtccataacttgtctctcaaatagttatcatcctcttctctttttaaactccccacaacacacacacacacattcattcaaacaacatattctatctattgacaccttaattaacacaaattcttgccttcttaacacagtataatgtcaaatcgaagaacacgcggttcgagacaatcatcaggagcttctagaataagtgatgatcaaattgctgatctcgtatcaaagttacaattacttatccctgaaagccggagcactaggagttccgataaggtagtatttttcagtttaagttatatataccgacagtttgaattccttagttatatataagcatgttgaattgtacttgttgtggtacattcacacattttgacaatgttatttggttacattttgtttgttctcttcttttacttgctataaactatatatgttgtgtttgtaaaaatgaattgaattatatttttccttgaagccattcatatttttttgtggccttcattatctttttagggataagtttaatttgaaagtcatattctcatgcccactaggccatattgcaagctccctcatttaatatttttgtgtgcttaagcatgtggtgtaggactctttgtcacttcataacatttcttggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="85721" stop="84397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85421" g_stop="84697" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-E348051" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85421" e_stop="84697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTGTGTTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</genome_strand>
        <mrna_strand>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTTGTGTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>144</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="990" PGL_stop="444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="990" e_stop="926"/>
            <exon e_start="842" e_stop="444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="990" e_stop="926" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="925" i_stop="843" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="842" e_stop="444" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="990" stop="926"/>
              <exon start="842" stop="444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="990" stop="926"/>
              <exon start="842" stop="444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="989" stop="926"/>
              <exon start="842" stop="444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAG : GCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</gDNA_template>
            <first_frame> W  *  Q  K  *  Q  K  P  P  *  L  P  S  L  G  L  M  S  T  *  L  R :   Q  E  Q  T  I  Q  *  K  P  L  V  D  S  *  R  V  A  Y  L  M  T  G  S  E  Q  P  S  V  T  *  A  E  L  D  H  R  L  L  V  L  N  T  R  V  *  I  I  *  K  R  H  I  P  L  T  A  S  F  R  F  M  T  C  S  P  L  P  C  G  L  S  I  H  P  F  S  C  S  F  L  R  F  S  E  L  Y  Y  *  F  V  D  *  *  *  L  F  *  F  K  E  A  K  F  *  L  D  *  L  C  C  N  V  I  L  I  E  L  T  L  L  L  M  H  L  M  C  C  L  M  E  T  I   </first_frame>
            <second_frame>  G  N  K  N  N  R  S  R  H  D  C  Q  A  W  D  *  C  L  H  N  *   : G  R  N  R  P  F  S  E  S  P  *  W  I  L  E  G  W  H  T  *  *  L  A  R  N  S  H  P  L  H  E  L  S  *  I  I  G  C  S  C  *  I  R  G  F  K  S  F  E  K  D  T  F  H  *  Q  Q  V  F  V  L  *  R  A  V  P  S  L  V  V  S  L  F  I  L  F  P  V  H  F  S  D  F  L  N  C  T  I  N  L  L  I  N  S  S  C  F  D  L  R  K  R  N  F  D  L  I  N  C  V  V  M  S  Y  *  S  N  *  H  F  Y  *  C  I  S  C  V  A  *  W  K  P  S  </second_frame>
            <third_frame>   V  T  K  I  T  E  A  A  M  I  A  K  L  G  I  D  V  Y  I  T  K  :  A  G  T  D  H  S  V  K  A  L  S  G  F  L  K  G  G  I  P  D  D  W  L  G  T  A  I  R  Y  M  S  *  A  R  S  *  V  A  R  A  E  Y  E  G  L  N  H  L  K  K  T  H  S  T  N  S  K  F  S  F  Y  D  V  Q  S  P  P  L  W  S  L  Y  S  S  F  F  L  F  I  S  Q  I  F  *  T  V  L  L  I  C  *  L  I  V  V  V  L  I  *  G  S  E  I  L  T  *  L  I  V  L  *  C  H  I  D  R  I  D  T  S  I  N  A  S  H  V  L  P  D  G  N  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0101P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="5770" PGL_stop="1795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5770" e_stop="5669"/>
            <exon e_start="4827" e_stop="4597"/>
            <exon e_start="4423" e_stop="4326"/>
            <exon e_start="3918" e_stop="3876"/>
            <exon e_start="3298" e_stop="3237"/>
            <exon e_start="3118" e_stop="3062"/>
            <exon e_start="1958" e_stop="1923"/>
            <exon e_start="1848" e_stop="1795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.941"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="0.401" acc_prob="0.996" e_score="0.980"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.495" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="5770" e_stop="5669" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="5668" i_stop="4828" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="4827" e_stop="4597" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4596" i_stop="4424" i_length="173"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="4423" e_stop="4326" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.401" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4325" i_stop="3919" i_length="407"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3918" e_stop="3876" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="3875" i_stop="3299" i_length="577"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3298" e_stop="3237" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.495" acc_prob="0.976">
            <gDNA_intron_boundary i_start="3236" i_stop="3119" i_length="118"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3118" e_stop="3062" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="3061" i_stop="1959" i_length="1103"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="1958" e_stop="1923" e_length="36"/>
          </exon>
          <intron i_serial="7" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="1922" i_stop="1849" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.926">
            <gDNA_exon_boundary e_start="1848" e_stop="1795" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5770" stop="5669"/>
              <exon start="4827" stop="4597"/>
              <exon start="4423" stop="4326"/>
              <exon start="3918" stop="3876"/>
              <exon start="3298" stop="3237"/>
              <exon start="3118" stop="3062"/>
              <exon start="1958" stop="1923"/>
              <exon start="1848" stop="1795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5770" stop="5669"/>
              <exon start="4827" stop="4597"/>
              <exon start="4423" stop="4326"/>
              <exon start="3918" stop="3876"/>
              <exon start="3298" stop="3237"/>
              <exon start="3118" stop="3062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5750" stop="5669"/>
              <exon start="4827" stop="4597"/>
              <exon start="4423" stop="4326"/>
              <exon start="3918" stop="3876"/>
              <exon start="3298" stop="3237"/>
              <exon start="3118" stop="3062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCATCCAACTTTTAGAGTGAATTGACCAAAGCAGCAGAGCATTCACCAAAAATGGAGCACAAGAAAACAACTAAGCGTCTCCGTTGTATCGTTAAACTCG : GAGGTGCAGCCATCACGTGTAAAAATAAATTGGAGACTATAGATGAGGAGAATCTTAAGGAAGTTTCGTCCCAGATTCGTCAAGCATTTGTTCCGGACTCTACTTCTGCAAATGTTCTTGGAATGGATTGGAGTAAAAGGCTGGGACAGTCTGAAGCTCCAAGTTTCGTTAATGATTTCAGTGATCAACCAGTTGTGGATTCAGAAAGTTTTATTGTTGTTCATGGAGCAG : GTTCCTTTGGACACTTTCAAGCTAGCAAGTCAGGGGTTCATAAGGGTGGACTAAGCCGGCCTCTTGTCAAGGCAGGTTTTGTTGCCACAAGAATTTCA : GTCACATCCCTCAATCTTGAAATCGTGAGAGCCCTAGCAAGAG : AGGGTATTCCTTCCATCGGAATGTCTCCATTCTCATGTGGTTGGTCAACATGTCAAAGAAAT : ATGACGGAGGCTGACATTTCCATGGTCATTAAAGCTATTGATGCTGGTTTTATACCT : GTCCTGCATGGAGATGCAGTTCTGGATACATTACAG : GAGTGCACTATTCTGAGTGGAGACGTGATAATACGTCATTTAGCAGCTGAACTA</gDNA_template>
            <first_frame> F  H  P  T  F  R  V  N  *  P  K  Q  Q  S  I  H  Q  K  W  S  T  R  K  Q  L  S  V  S  V  V  S  L  N  S  :  E  V  Q  P  S  R  V  K  I  N  W  R  L  *  M  R  R  I  L  R  K  F  R  P  R  F  V  K  H  L  F  R  T  L  L  L  Q  M  F  L  E  W  I  G  V  K  G  W  D  S  L  K  L  Q  V  S  L  M  I  S  V  I  N  Q  L  W  I  Q  K  V  L  L  L  F  M  E  Q  :  V  P  L  D  T  F  K  L  A  S  Q  G  F  I  R  V  D  *  A  G  L  L  S  R  Q  V  L  L  P  Q  E  F  Q :   S  H  P  S  I  L  K  S  *  E  P  *  Q  E  :  R  V  F  L  P  S  E  C  L  H  S  H  V  V  G  Q  H  V  K  E  I :   *  R  R  L  T  F  P  W  S  L  K  L  L  M  L  V  L  Y  L :   S  C  M  E  M  Q  F  W  I  H  Y  R :   S  A  L  F  *  V  E  T  *  *  Y  V  I  *  Q  L  N   </first_frame>
            <second_frame>  F  I  Q  L  L  E  *  I  D  Q  S  S  R  A  F  T  K  N  G  A  Q  E  N  N  *  A  S  P  L  Y  R  *  T  R :   R  C  S  H  H  V  *  K  *  I  G  D  Y  R  *  G  E  S  *  G  S  F  V  P  D  S  S  S  I  C  S  G  L  Y  F  C  K  C  S  W  N  G  L  E  *  K  A  G  T  V  *  S  S  K  F  R  *  *  F  Q  *  S  T  S  C  G  F  R  K  F  Y  C  C  S  W  S  R :   F  L  W  T  L  S  S  *  Q  V  R  G  S  *  G  W  T  K  P  A  S  C  Q  G  R  F  C  C  H  K  N  F   : S  H  I  P  Q  S  *  N  R  E  S  P  S  K  R :   G  Y  S  F  H  R  N  V  S  I  L  M  W  L  V  N  M  S  K  K   : Y  D  G  G  *  H  F  H  G  H  *  S  Y  *  C  W  F  Y  T   : C  P  A  W  R  C  S  S  G  Y  I  T   : G  V  H  Y  S  E  W  R  R  D  N  T  S  F  S  S  *  T  </second_frame>
            <third_frame>   S  S  N  F  *  S  E  L  T  K  A  A  E  H  S  P  K  M  E  H  K  K  T  T  K  R  L  R  C  I  V  K  L   : G  G  A  A  I  T  C  K  N  K  L  E  T  I  D  E  E  N  L  K  E  V  S  S  Q  I  R  Q  A  F  V  P  D  S  T  S  A  N  V  L  G  M  D  W  S  K  R  L  G  Q  S  E  A  P  S  F  V  N  D  F  S  D  Q  P  V  V  D  S  E  S  F  I  V  V  H  G  A   : G  S  F  G  H  F  Q  A  S  K  S  G  V  H  K  G  G  L  S  R  P  L  V  K  A  G  F  V  A  T  R  I  S  :  V  T  S  L  N  L  E  I  V  R  A  L  A  R   : E  G  I  P  S  I  G  M  S  P  F  S  C  G  W  S  T  C  Q  R  N  :  M  T  E  A  D  I  S  M  V  I  K  A  I  D  A  G  F  I  P  :  V  L  H  G  D  A  V  L  D  T  L  Q  :  E  C  T  I  L  S  G  D  V  I  I  R  H  L  A  A  E  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5753" stop="5669"/>
                    <exon start="4827" stop="4597"/>
                    <exon start="4423" stop="4326"/>
                    <exon start="3918" stop="3876"/>
                    <exon start="3298" stop="3237"/>
                    <exon start="3118" stop="3062"/>
                    <exon start="1958" stop="1923"/>
                    <exon start="1848" stop="1795"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELTKAAEHSPKMEHKKTTKRLRCIVKLGGAAITCKNKLETIDEENLKEVSSQIRQAFVPDSTSANVLGMDWSKRLGQSEAPSFVNDFSDQPVVDSESFIVVHGAGSFGHFQASKSGVHKGGLSRPLVKAGFVATRISVTSLNLEIVRALAREGIPSIGMSPFSCGWSTCQRNMTEADISMVIKAIDAGFIPVLHGDAVLDTLQECTILSGDVIIRHLAAEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="7737" PGL_stop="10257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7737" e_stop="9202"/>
            <exon e_start="9547" e_stop="9574"/>
            <exon e_start="9760" e_stop="9771"/>
            <exon e_start="9916" e_stop="9949"/>
            <exon e_start="10231" e_stop="10257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.968" e_score="0.998"/>
          <exon-intron don_prob="0.635" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="1.000" acc_prob="0.080" e_score="0.583"/>
          <exon-intron don_prob="0.552" acc_prob="0.000" e_score="0.618"/>
          <exon-only e_score="0.630"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="7737" e_stop="9202" e_length="1466"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="9203" i_stop="9546" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="9547" e_stop="9574" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.635" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9575" i_stop="9759" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="0.583">
            <gDNA_exon_boundary e_start="9760" e_stop="9771" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.080">
            <gDNA_intron_boundary i_start="9772" i_stop="9915" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="0.618">
            <gDNA_exon_boundary e_start="9916" e_stop="9949" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.552" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9950" i_stop="10230" i_length="281"/>
          </intron>
          <exon e_serial="5" e_score="0.630">
            <gDNA_exon_boundary e_start="10231" e_stop="10257" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="8362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7747" stop="8229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7751" stop="8510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7756" stop="8373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7763" stop="8565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7771" stop="8595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7771" stop="8117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8548" stop="9202"/>
              <exon start="9547" stop="9574"/>
              <exon start="9760" stop="9771"/>
              <exon start="9916" stop="9949"/>
              <exon start="10231" stop="10257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546419" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATAGACGAAACAAGCTTGACGGGTCTTCCATAAAATCCATGGAAAGTACTGTAGCTGATTGTAGCCAACGCCAAAAGAGACAGAACAGAAGCTAAAAGGGTGTACACAAGGAGAAGAAGAAGGGACTGGGAATCCGGTTGGGTCAGATTCCGAATCGGGTCATATGGGTCAGTGGAGGTGAAGAAGGAGAAGGAAAGGTGAGATGGGTGTCGGTTAAAAAGGTTGGAATCGGAGTGAAAGAGAGCGGTTTGAAGAGTAGGATAGATGATGAGAGAAAAAGAGAGAGGCAAAAGGAAGGAAACTGAAAGGGCTAAGAAATGGCGTGAGTGAGCATTGATTATCCGCTTTGATTGGGAAAGTACTCCCCAGAGATTAAGGGTGTGTGGATAACCAGACATTGAAGATGATGATGAAGAAACCAAAGAGATGATGAGAAAAACTAGTCTCTGTTTTTGTGATTTGGGGCTTTTTTCCCTTTTCTTGAATTTTTCAGGATTGATGTGAAGGAGGAGACAAGTGGCAATAAGGTTCAATATTTTACTCAATTCACTAGAAAAT : AGTGTGTGCAGCCGTACATATGATTCAA : CAGTTTACTATG : TTTGTCATTCACCTAGTTCTAAAAGAGAAGAAAA : ACAACTACCTCCTAGTTTTTTTCTCTC</gDNA_template>
            <first_frame> A  L  T  E  S  E  P  F  G  Y  S  N  Q  T  N  I  *  L  R  K  *  Y  K  *  F  L  Q  Y  L  H  N  M  *  K  L  E  K  R  S  N  C  N  L  L  Q  Q  T  Y  Y  I  L  *  S  I  F  T  *  F  L  N  Y  Y  G  T  R  Y  M  I  K  T  I  I  S  T  K  Y  K  V  K  T  A  S  *  T  H  *  P  *  D  C  F  N  F  E  Q  H  I  Q  H  E  E  P  S  H  C  Q  K  A  S  R  H  T  R  E  Q  T  P  L  R  Y  P  M  L  A  P  R  A  T  P  C  N  T  Y  T  T  R  H  S  L  Q  C  S  E  A  S  G  E  *  R  S  P  N  S  P  P  S  A  I  S  P  Q  S  L  S  T  H  H  *  Q  L  L  H  S  P  E  N  L  N  N  H  P  L  T  I  Q  S  E  P  R  K  I  A  T  L  T  T  P  P  I  S  S  P  S  P  N  K  H  F  F  A  M  L  G  N  P  I  S  I  P  Q  L  Q  S  H  K  L  M  T  N  *  P  A  T  T  *  Q  P  I  Q  Q  V  H  L  Q  K  H  P  N  P  L  S  N  S  N  R  N  P  L  Q  T  Q  E  T  A  H  P  A  P  Q  S  P  P  I  A  Q  T  V  K  Q  S  K  H  K  *  H  A  K  R  *  G  W  Q  L  E  A  R  K  S  T  K  P  T  S  *  T  K  Q  A  *  R  V  F  H  K  I  H  G  K  Y  C  S  *  L  *  P  T  P  K  E  T  E  Q  K  L  K  G  C  T  Q  G  E  E  E  G  T  G  N  P  V  G  S  D  S  E  S  G  H  M  G  Q  W  R  *  R  R  R  R  K  G  E  M  G  V  G  *  K  G  W  N  R  S  E  R  E  R  F  E  E  *  D  R  *  *  E  K  K  R  E  A  K  G  R  K  L  K  G  L  R  N  G  V  S  E  H  *  L  S  A  L  I  G  K  V  L  P  R  D  *  G  C  V  D  N  Q  T  L  K  M  M  M  K  K  P  K  R  *  *  E  K  L  V  S  V  F  V  I  W  G  F  F  P  F  S  *  I  F  Q  D  *  C  E  G  G  D  K  W  Q  *  G  S  I  F  Y  S  I  H  *  K  I :   V  C  A  A  V  H  M  I  Q  :  Q  F  T  M  :  F  V  I  H  L  V  L  K  E  K  K   : N  N  Y  L  L  V  F  F  S  </first_frame>
            <second_frame>  H  *  L  K  A  S  H  L  D  I  V  I  K  L  T  F  N  *  G  N  D  T  S  S  F  Y  S  T  Y  T  I  C  R  S  *  K  R  D  P  I  A  T  C  F  N  K  L  I  T  Y  C  K  A  S  S  H  D  F  L  T  T  M  E  L  D  T  *  L  K  P  *  F  L  Q  N  T  K  *  R  L  R  L  E  P  T  D  L  K  T  V  S  T  L  N  N  T  Y  N  M  R  N  L  L  I  V  K  R  Q  V  D  I  L  A  S  K  L  L  C  D  I  Q  C  *  L  P  V  Q  R  L  A  I  H  I  Q  H  D  T  R  C  N  V  L  K  H  Q  E  S  S  E  A  R  T  H  H  H  L  Q  Y  H  P  K  A  C  P  P  T  T  S  S  S  Y  T  H  Q  K  T  *  T  T  T  H  *  Q  S  N  Q  N  P  E  K  *  Q  H  *  Q  R  H  P  S  H  P  L  H  Q  I  S  T  S  S  Q  C  L  V  T  P  F  R  F  H  N  Y  N  H  I  S  *  *  P  I  N  L  Q  P  H  N  N  Q  Y  N  K  Y  T  Y  K  N  T  Q  T  H  *  V  I  R  I  V  T  H  F  K  P  K  K  L  H  T  L  H  H  N  H  R  Q  *  P  K  Q  *  N  N  Q  S  I  N  D  T  R  N  D  K  G  G  N  *  R  Q  E  R  V  Q  N  R  L  H  R  R  N  K  L  D  G  S  S  I  K  S  M  E  S  T  V  A  D  C  S  Q  R  Q  K  R  Q  N  R  S  *  K  G  V  H  K  E  K  K  K  G  L  G  I  R  L  G  Q  I  P  N  R  V  I  W  V  S  G  G  E  E  G  E  G  K  V  R  W  V  S  V  K  K  V  G  I  G  V  K  E  S  G  L  K  S  R  I  D  D  E  R  K  R  E  R  Q  K  E  G  N  *  K  G  *  E  M  A  *  V  S  I  D  Y  P  L  *  L  G  K  Y  S  P  E  I  K  G  V  W  I  T  R  H  *  R  *  *  *  R  N  Q  R  D  D  E  K  N  *  S  L  F  L  *  F  G  A  F  F  P  F  L  E  F  F  R  I  D  V  K  E  E  T  S  G  N  K  V  Q  Y  F  T  Q  F  T  R  K   : *  C  V  Q  P  Y  I  *  F  N :   S  L  L  C :   L  S  F  T  *  F  *  K  R  R  K  :  T  T  T  S  *  F  F  S  L </second_frame>
            <third_frame>   I  N  *  K  R  A  I  W  I  *  *  S  N  *  H  L  I  E  E  M  I  Q  V  V  F  T  V  P  T  Q  Y  V  E  A  R  K  E  I  Q  L  Q  P  A  S  T  N  L  L  H  I  V  K  H  L  H  M  I  S  *  L  L  W  N  S  I  H  D  *  N  H  N  F  Y  K  I  Q  S  K  D  C  V  L  N  P  L  T  L  R  L  F  Q  L  *  T  T  H  T  T  *  G  T  F  S  L  S  K  G  K  *  T  Y  S  R  A  N  S  S  A  I  S  N  A  S  S  P  C  N  A  L  Q  Y  I  Y  N  T  T  L  A  A  M  F  *  S  I  R  R  V  A  K  P  E  L  T  T  I  C  N  I  T  P  K  L  V  H  P  P  L  A  A  P  T  L  T  R  K  L  E  Q  P  P  T  N  N  P  I  R  T  P  K  N  S  N  T  D  N  A  T  H  L  I  P  F  T  K  *  A  L  L  R  N  A  W  *  P  H  F  D  S  T  T  T  I  T  *  A  N  D  Q  L  T  C  N  H  I  T  T  N  T  T  S  T  P  T  K  T  P  K  P  I  K  *  F  E  S  *  P  T  S  N  P  R  N  C  T  P  C  T  T  I  T  A  N  S  P  N  S  K  T  I  K  A  *  M  T  R  E  T  I  R  V  A  I  R  G  K  K  E  Y  K  T  D  F  I  D  E  T  S  L  T  G  L  P  *  N  P  W  K  V  L  *  L  I  V  A  N  A  K  R  D  R  T  E  A  K  R  V  Y  T  R  R  R  R  R  D  W  E  S  G  W  V  R  F  R  I  G  S  Y  G  S  V  E  V  K  K  E  K  E  R  *  D  G  C  R  L  K  R  L  E  S  E  *  K  R  A  V  *  R  V  G  *  M  M  R  E  K  E  R  G  K  R  K  E  T  E  R  A  K  K  W  R  E  *  A  L  I  I  R  F  D  W  E  S  T  P  Q  R  L  R  V  C  G  *  P  D  I  E  D  D  D  E  E  T  K  E  M  M  R  K  T  S  L  C  F  C  D  L  G  L  F  S  L  F  L  N  F  S  G  L  M  *  R  R  R  Q  V  A  I  R  F  N  I  L  L  N  S  L  E  N  :  S  V  C  S  R  T  Y  D  S   : T  V  Y  Y   : V  C  H  S  P  S  S  K  R  E  E  K :   Q  L  P  P  S  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8740" stop="8949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGVHKEKKKGLGIRLGQIPNRVIWVSGGEEGEGKVRWVSVKKVGIGVKESGLKSRIDDERKRERQKEGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="9361" PGL_stop="7759"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9194" e_stop="7759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="9194" e_stop="7759" e_length="1436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9194" stop="8475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9194" stop="8734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9111" stop="8467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9032" stop="8390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9028" stop="8467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9028" stop="8481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8983" stop="8344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8974" stop="8457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8950" stop="8285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8887" stop="8548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8881" stop="8448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8811" stop="8550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8728" stop="8257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8682" stop="8448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8186" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8179" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAATTGAGTAAAATATTGAACCTTATTGCCACTTGTCTCCTCCTTCACATCAATCCTGAAAAATTCAAGAAAAGGGAAAAAAGCCCCAAATCACAAAAACAGAGACTAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</gDNA_template>
            <first_frame> V  N  *  V  K  Y  *  T  L  L  P  L  V  S  S  F  T  S  I  L  K  N  S  R  K  G  K  K  A  P  N  H  K  N  R  D  *  F  F  S  S  S  L  W  F  L  H  H  H  L  Q  C  L  V  I  H  T  P  L  I  S  G  E  Y  F  P  N  Q  S  G  *  S  M  L  T  H  A  I  S  *  P  F  Q  F  P  S  F  C  L  S  L  F  L  S  S  S  I  L  L  F  K  P  L  S  F  T  P  I  P  T  F  L  T  D  T  H  L  T  F  P  S  P  S  S  P  P  L  T  H  M  T  R  F  G  I  *  P  N  R  I  P  S  P  F  F  F  S  L  C  T  P  F  *  L  L  F  C  L  F  W  R  W  L  Q  S  A  T  V  L  S  M  D  F  M  E  D  P  S  S  L  F  R  L  *  S  R  F  C  T  L  S  C  L  *  L  P  P  L  S  F  R  V  S  F  M  L  *  L  F  Y  C  L  G  Y  W  R  *  L  W  C  R  V  C  S  F  L  G  L  K  W  V  T  I  R  I  T  *  W  V  W  V  F  L  *  V  Y  L  L  Y  W  L  L  C  G  C  R  L  I  G  H  *  L  M  *  L  *  L  W  N  R  N  G  V  T  K  H  C  E  E  V  L  I  W  *  R  G  *  D  G  W  R  C  Q  C  C  Y  F  S  G  F  *  L  D  C  *  W  V  V  V  Q  V  F  W  *  V  *  E  L  L  V  V  G  G  Q  A  L  G  *  Y  C  R  W  W  *  V  R  A  S  L  L  S  *  C  F  R  T  L  Q  R  V  S  C  C  I  C  I  A  R  R  C  T  G  S  *  H  W  I  S  Q  R  S  L  L  A  S  M  S  T  C  L  L  T  M  R  R  F  L  M  L  Y  V  L  F  K  V  E  T  V  L  R  S  V  G  S  R  R  S  L  Y  F  V  F  C  R  N  Y  G  F  N  H  V  S  S  S  I  V  V  K  K  S  C  E  D  A  L  Q  Y  V  I  S  L  L  K  Q  V  A  I  G  S  L  F  *  L  L  H  I  V  *  V  L  *  K  L  L  V  S  F  P  Q  L  N  V  S  L  I  T  I  S   </first_frame>
            <second_frame>  *  I  E  *  N  I  E  P  Y  C  H  L  S  P  P  S  H  Q  S  *  K  I  Q  E  K  G  K  K  P  Q  I  T  K  T  E  T  S  F  S  H  H  L  F  G  F  F  I  I  I  F  N  V  W  L  S  T  H  P  *  S  L  G  S  T  F  P  I  K  A  D  N  Q  C  S  L  T  P  F  L  S  P  F  S  F  L  P  F  A  S  L  F  F  S  H  H  L  S  Y  S  S  N  R  S  L  S  L  R  F  Q  P  F  *  P  T  P  I  S  P  F  L  L  L  L  H  L  H  *  P  I  *  P  D  S  E  S  D  P  T  G  F  P  V  P  S  S  S  P  C  V  H  P  F  S  F  C  S  V  S  F  G  V  G  Y  N  Q  L  Q  Y  F  P  W  I  L  W  K  T  R  Q  A  C  F  V  Y  E  V  G  F  V  L  F  L  A  S  N  C  H  P  Y  R  F  A  C  H  L  C  F  D  C  F  T  V  W  A  I  G  G  D  C  G  A  G  C  A  V  S  W  V  *  S  G  L  R  F  E  L  L  N  G  F  G  C  F  C  R  C  T  C  C  I  G  C  Y  V  V  A  G  *  L  V  I  S  L  C  D  C  S  C  G  I  E  M  G  L  P  S  I  A  K  K  C  L  F  G  E  G  D  E  M  G  G  V  V  S  V  A  I  F  R  G  S  D  W  I  V  S  G  W  L  F  K  F  S  G  E  C  R  S  C  *  W  W  V  D  K  L  W  G  D  I  A  D  G  G  E  F  G  L  R  Y  S  P  D  A  S  E  H  C  S  E  C  R  V  V  Y  V  L  Q  G  V  A  R  G  A  S  I  G  Y  R  R  G  V  C  S  R  V  C  L  L  A  F  *  Q  *  E  G  S  S  C  C  M  C  C  S  K  L  K  Q  S  *  G  Q  W  V  Q  D  A  V  F  T  L  Y  F  V  E  I  M  V  L  I  M  Y  R  V  P  *  *  L  R  N  H  V  K  M  L  Y  N  M  *  *  V  C  *  S  R  L  Q  L  D  L  F  S  S  F  Y  I  L  C  R  Y  C  K  N  Y  L  Y  H  F  L  N  *  M  L  V  *  L  L  Y  P  </second_frame>
            <third_frame>   E  L  S  K  I  L  N  L  I  A  T  C  L  L  L  H  I  N  P  E  K  F  K  K  R  E  K  S  P  K  S  Q  K  Q  R  L  V  F  L  I  I  S  L  V  S  S  S  S  S  S  M  S  G  Y  P  H  T  L  N  L  W  G  V  L  S  Q  S  K  R  I  I  N  A  H  S  R  H  F  L  A  L  S  V  S  F  L  L  P  L  S  F  S  L  I  I  Y  P  T  L  Q  T  A  L  F  H  S  D  S  N  L  F  N  R  H  P  S  H  L  S  F  S  F  F  T  S  T  D  P  Y  D  P  I  R  N  L  T  Q  P  D  S  Q  S  L  L  L  L  L  V  Y  T  L  L  A  S  V  L  S  L  L  A  L  A  T  I  S  Y  S  T  F  H  G  F  Y  G  R  P  V  K  L  V  S  S  M  K  S  V  L  Y  S  F  L  P  L  I  A  T  L  I  V  S  R  V  I  Y  A  L  I  V  L  L  F  G  L  L  A  V  I  V  V  Q  G  V  Q  F  L  G  F  E  V  G  Y  D  S  N  Y  L  M  G  L  G  V  F  V  G  V  L  V  V  L  V  V  M  W  L  Q  V  N  W  S  L  A  Y  V  I  V  V  V  E  S  K  W  G  Y  Q  A  L  R  R  S  A  Y  L  V  K  G  M  R  W  V  A  L  S  V  L  L  F  F  G  V  L  I  G  L  L  V  G  G  C  S  S  F  L  V  S  V  G  A  A  S  G  G  W  T  S  F  G  V  I  L  Q  M  V  V  S  S  G  F  A  T  L  L  M  L  Q  N  I  A  A  S  V  V  L  Y  M  Y  C  K  A  L  H  G  E  L  A  L  D  I  A  E  E  F  A  R  E  Y  V  Y  L  P  F  D  N  E  K  V  P  H  V  V  C  V  V  Q  S  *  N  S  L  K  V  S  G  F  K  T  Q  S  L  L  C  I  L  *  K  L  W  F  *  S  C  I  E  F  H  S  S  *  E  I  M  *  R  C  F  T  I  C  N  K  F  V  E  A  G  C  N  W  I  S  F  L  A  S  T  Y  C  V  G  T  V  K  T  T  C  I  I  S  S  I  K  C  *  F  D  Y  Y  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9192" stop="8008"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELSKILNLIATCLLLHINPEKFKKREKSPKSQKQRLVFLIISLVSSSSSSMSGYPHTLNLWGVLSQSKRIINAHSRHFLALSVSFLLPLSFSLIIYPTLQTALFHSDSNLFNRHPSHLSFSFFTSTDPYDPIRNLTQPDSQSLLLLLVYTLLASVLSLLALATISYSTFHGFYGRPVKLVSSMKSVLYSFLPLIATLIVSRVIYALIVLLFGLLAVIVVQGVQFLGFEVGYDSNYLMGLGVFVGVLVVLVVMWLQVNWSLAYVIVVVESKWGYQALRRSAYLVKGMRWVALSVLLFFGVLIGLLVGGCSSFLVSVGAASGGWTSFGVILQMVVSSGFATLLMLQNIAASVVLYMYCKALHGELALDIAEEFAREYVYLPFDNEKVPHVVCVVQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9211" e_stop="9186"/>
            <exon e_start="9086" e_stop="7759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.037" acc_prob="0.000" e_score="0.577"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.577">
            <gDNA_exon_boundary e_start="9211" e_stop="9186" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.037" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9185" i_stop="9087" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="9086" e_stop="7759" e_length="1328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9211" stop="9186"/>
              <exon start="9086" stop="8681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9032" stop="8390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9028" stop="8467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9028" stop="8481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8983" stop="8344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8974" stop="8457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8950" stop="8285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8887" stop="8548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8881" stop="8448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8811" stop="8550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8728" stop="8257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8682" stop="8448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8186" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8179" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGACCAATTTTCTAGTGAATTGA : TAGTTTTTCTCATCATCTCTTTGGTTTCTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</gDNA_template>
            <first_frame> E  R  P  I  F  *  *  I  D :   S  F  S  H  H  L  F  G  F  F  I  I  I  F  N  V  W  L  S  T  H  P  *  S  L  G  S  T  F  P  I  K  A  D  N  Q  C  S  L  T  P  F  L  S  P  F  S  F  L  P  F  A  S  L  F  F  S  H  H  L  S  Y  S  S  N  R  S  L  S  L  R  F  Q  P  F  *  P  T  P  I  S  P  F  L  L  L  L  H  L  H  *  P  I  *  P  D  S  E  S  D  P  T  G  F  P  V  P  S  S  S  P  C  V  H  P  F  S  F  C  S  V  S  F  G  V  G  Y  N  Q  L  Q  Y  F  P  W  I  L  W  K  T  R  Q  A  C  F  V  Y  E  V  G  F  V  L  F  L  A  S  N  C  H  P  Y  R  F  A  C  H  L  C  F  D  C  F  T  V  W  A  I  G  G  D  C  G  A  G  C  A  V  S  W  V  *  S  G  L  R  F  E  L  L  N  G  F  G  C  F  C  R  C  T  C  C  I  G  C  Y  V  V  A  G  *  L  V  I  S  L  C  D  C  S  C  G  I  E  M  G  L  P  S  I  A  K  K  C  L  F  G  E  G  D  E  M  G  G  V  V  S  V  A  I  F  R  G  S  D  W  I  V  S  G  W  L  F  K  F  S  G  E  C  R  S  C  *  W  W  V  D  K  L  W  G  D  I  A  D  G  G  E  F  G  L  R  Y  S  P  D  A  S  E  H  C  S  E  C  R  V  V  Y  V  L  Q  G  V  A  R  G  A  S  I  G  Y  R  R  G  V  C  S  R  V  C  L  L  A  F  *  Q  *  E  G  S  S  C  C  M  C  C  S  K  L  K  Q  S  *  G  Q  W  V  Q  D  A  V  F  T  L  Y  F  V  E  I  M  V  L  I  M  Y  R  V  P  *  *  L  R  N  H  V  K  M  L  Y  N  M  *  *  V  C  *  S  R  L  Q  L  D  L  F  S  S  F  Y  I  L  C  R  Y  C  K  N  Y  L  Y  H  F  L  N  *  M  L  V  *  L  L  Y  P  </first_frame>
            <second_frame>  K  D  Q  F  S  S  E  L   : I  V  F  L  I  I  S  L  V  S  S  S  S  S  S  M  S  G  Y  P  H  T  L  N  L  W  G  V  L  S  Q  S  K  R  I  I  N  A  H  S  R  H  F  L  A  L  S  V  S  F  L  L  P  L  S  F  S  L  I  I  Y  P  T  L  Q  T  A  L  F  H  S  D  S  N  L  F  N  R  H  P  S  H  L  S  F  S  F  F  T  S  T  D  P  Y  D  P  I  R  N  L  T  Q  P  D  S  Q  S  L  L  L  L  L  V  Y  T  L  L  A  S  V  L  S  L  L  A  L  A  T  I  S  Y  S  T  F  H  G  F  Y  G  R  P  V  K  L  V  S  S  M  K  S  V  L  Y  S  F  L  P  L  I  A  T  L  I  V  S  R  V  I  Y  A  L  I  V  L  L  F  G  L  L  A  V  I  V  V  Q  G  V  Q  F  L  G  F  E  V  G  Y  D  S  N  Y  L  M  G  L  G  V  F  V  G  V  L  V  V  L  V  V  M  W  L  Q  V  N  W  S  L  A  Y  V  I  V  V  V  E  S  K  W  G  Y  Q  A  L  R  R  S  A  Y  L  V  K  G  M  R  W  V  A  L  S  V  L  L  F  F  G  V  L  I  G  L  L  V  G  G  C  S  S  F  L  V  S  V  G  A  A  S  G  G  W  T  S  F  G  V  I  L  Q  M  V  V  S  S  G  F  A  T  L  L  M  L  Q  N  I  A  A  S  V  V  L  Y  M  Y  C  K  A  L  H  G  E  L  A  L  D  I  A  E  E  F  A  R  E  Y  V  Y  L  P  F  D  N  E  K  V  P  H  V  V  C  V  V  Q  S  *  N  S  L  K  V  S  G  F  K  T  Q  S  L  L  C  I  L  *  K  L  W  F  *  S  C  I  E  F  H  S  S  *  E  I  M  *  R  C  F  T  I  C  N  K  F  V  E  A  G  C  N  W  I  S  F  L  A  S  T  Y  C  V  G  T  V  K  T  T  C  I  I  S  S  I  K  C  *  F  D  Y  Y  I  Q </second_frame>
            <third_frame>   K  T  N  F  L  V  N  *  :  *  F  F  S  S  S  L  W  F  L  H  H  H  L  Q  C  L  V  I  H  T  P  L  I  S  G  E  Y  F  P  N  Q  S  G  *  S  M  L  T  H  A  I  S  *  P  F  Q  F  P  S  F  C  L  S  L  F  L  S  S  S  I  L  L  F  K  P  L  S  F  T  P  I  P  T  F  L  T  D  T  H  L  T  F  P  S  P  S  S  P  P  L  T  H  M  T  R  F  G  I  *  P  N  R  I  P  S  P  F  F  F  S  L  C  T  P  F  *  L  L  F  C  L  F  W  R  W  L  Q  S  A  T  V  L  S  M  D  F  M  E  D  P  S  S  L  F  R  L  *  S  R  F  C  T  L  S  C  L  *  L  P  P  L  S  F  R  V  S  F  M  L  *  L  F  Y  C  L  G  Y  W  R  *  L  W  C  R  V  C  S  F  L  G  L  K  W  V  T  I  R  I  T  *  W  V  W  V  F  L  *  V  Y  L  L  Y  W  L  L  C  G  C  R  L  I  G  H  *  L  M  *  L  *  L  W  N  R  N  G  V  T  K  H  C  E  E  V  L  I  W  *  R  G  *  D  G  W  R  C  Q  C  C  Y  F  S  G  F  *  L  D  C  *  W  V  V  V  Q  V  F  W  *  V  *  E  L  L  V  V  G  G  Q  A  L  G  *  Y  C  R  W  W  *  V  R  A  S  L  L  S  *  C  F  R  T  L  Q  R  V  S  C  C  I  C  I  A  R  R  C  T  G  S  *  H  W  I  S  Q  R  S  L  L  A  S  M  S  T  C  L  L  T  M  R  R  F  L  M  L  Y  V  L  F  K  V  E  T  V  L  R  S  V  G  S  R  R  S  L  Y  F  V  F  C  R  N  Y  G  F  N  H  V  S  S  S  I  V  V  K  K  S  C  E  D  A  L  Q  Y  V  I  S  L  L  K  Q  V  A  I  G  S  L  F  *  L  L  H  I  V  *  V  L  *  K  L  L  V  S  F  P  Q  L  N  V  S  L  I  T  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9210" stop="9186"/>
                    <exon start="9086" stop="8008"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDQFSSELIVFLIISLVSSSSSSMSGYPHTLNLWGVLSQSKRIINAHSRHFLALSVSFLLPLSFSLIIYPTLQTALFHSDSNLFNRHPSHLSFSFFTSTDPYDPIRNLTQPDSQSLLLLLVYTLLASVLSLLALATISYSTFHGFYGRPVKLVSSMKSVLYSFLPLIATLIVSRVIYALIVLLFGLLAVIVVQGVQFLGFEVGYDSNYLMGLGVFVGVLVVLVVMWLQVNWSLAYVIVVVESKWGYQALRRSAYLVKGMRWVALSVLLFFGVLIGLLVGGCSSFLVSVGAASGGWTSFGVILQMVVSSGFATLLMLQNIAASVVLYMYCKALHGELALDIAEEFAREYVYLPFDNEKVPHVVCVVQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9361" e_stop="9358"/>
            <exon e_start="9059" e_stop="7759"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9361" e_stop="9358" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9357" i_stop="9060" i_length="298"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="9059" e_stop="7759" e_length="1301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9361" stop="9358"/>
              <exon start="9059" stop="8428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9032" stop="8390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9028" stop="8467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9028" stop="8481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8983" stop="8344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8974" stop="8457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8950" stop="8285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8887" stop="8548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8881" stop="8448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8811" stop="8550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8728" stop="8257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8682" stop="8448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8292" stop="7765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8186" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8179" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="7759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="7773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8084" stop="7767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215761" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATT : CTTCATCATCATCTTCAATGTCTGGTTATCCACACACCCTTAATCTCTGGGGAGTACTTTCCCAATCAAAGCGGATAATCAATGCTCACTCACGCCATTTCTTAGCCCTTTCAGTTTCCTTCCTTTTGCCTCTCTCTTTTTCTCTCATCATCTATCCTACTCTTCAAACCGCTCTCTTTCACTCCGATTCCAACCTTTTTAACCGACACCCATCTCACCTTTCCTTCTCCTTCTTCACCTCCACTGACCCATATGACCCGATTCGGAATCTGACCCAACCGGATTCCCAGTCCCTTCTTCTTCTCCTTGTGTACACCCTTTTAGCTTCTGTTCTGTCTCTTTTGGCGTTGGCTACAATCAGCTACAGTACTTTCCATGGATTTTATGGAAGACCCGTCAAGCTTGTTTCGTCTATGAAGTCGGTTTTGTACTCTTTCTTGCCTCTAATTGCCACCCTTATCGTTTCGCGTGTCATTTATGCTTTGATTGTTTTACTGTTTGGGCTATTGGCGGTGATTGTGGTGCAGGGTGTGCAGTTTCTTGGGTTTGAAGTGGGTTACGATTCGAATTACTTAATGGGTTTGGGTGTTTTTGTAGGTGTACTTGTTGTATTGGTTGTTATGTGGTTGCAGGTTAATTGGTCATTAGCTTATGTGATTGTAGTTGTGGAATCGAAATGGGGTTACCAAGCATTGCGAAGAAGTGCTTATTTGGTGAAGGGGATGAGATGGGTGGCGTTGTCAGTGTTGCTATTTTTCGGGGTTCTGATTGGATTGTTAGTGGGTGGTTGTTCAAGTTTTCTGGTGAGTGTAGGAGCTGCTAGTGGTGGGTGGACAAGCTTTGGGGTGATATTGCAGATGGTGGTGAGTTCGGGCTTCGCTACTCTCCTGATGCTTCAGAACATTGCAGCGAGTGTCGTGTTGTATATGTATTGCAAGGCGTTGCACGGGGAGCTAGCATTGGATATCGCAGAGGAGTTTGCTCGCGAGTATGTCTACTTGCCTTTTGACAATGAGAAGGTTCCTCATGTTGTATGTGTTGTTCAAAGTTGAAACAGTCTTAAGGTCAGTGGGTTCAAGACGCAGTCTTTACTTTGTATTTTGTAGAAATTATGGTTTTAATCATGTATCGAGTTCCATAGTAGTTAAGAAATCATGTGAAGATGCTTTACAATATGTAATAAGTTTGTTGAAGCAGGTTGCAATTGGATCTCTTTTCTAGCTTCTACATATTGTGTAGGTACTGTAAAAACTACTTGTATCATTTCCTCAATTAAATGTTAGTTTGATTACTATATCCAA</gDNA_template>
            <first_frame> N   : S  S  S  S  S  S  M  S  G  Y  P  H  T  L  N  L  W  G  V  L  S  Q  S  K  R  I  I  N  A  H  S  R  H  F  L  A  L  S  V  S  F  L  L  P  L  S  F  S  L  I  I  Y  P  T  L  Q  T  A  L  F  H  S  D  S  N  L  F  N  R  H  P  S  H  L  S  F  S  F  F  T  S  T  D  P  Y  D  P  I  R  N  L  T  Q  P  D  S  Q  S  L  L  L  L  L  V  Y  T  L  L  A  S  V  L  S  L  L  A  L  A  T  I  S  Y  S  T  F  H  G  F  Y  G  R  P  V  K  L  V  S  S  M  K  S  V  L  Y  S  F  L  P  L  I  A  T  L  I  V  S  R  V  I  Y  A  L  I  V  L  L  F  G  L  L  A  V  I  V  V  Q  G  V  Q  F  L  G  F  E  V  G  Y  D  S  N  Y  L  M  G  L  G  V  F  V  G  V  L  V  V  L  V  V  M  W  L  Q  V  N  W  S  L  A  Y  V  I  V  V  V  E  S  K  W  G  Y  Q  A  L  R  R  S  A  Y  L  V  K  G  M  R  W  V  A  L  S  V  L  L  F  F  G  V  L  I  G  L  L  V  G  G  C  S  S  F  L  V  S  V  G  A  A  S  G  G  W  T  S  F  G  V  I  L  Q  M  V  V  S  S  G  F  A  T  L  L  M  L  Q  N  I  A  A  S  V  V  L  Y  M  Y  C  K  A  L  H  G  E  L  A  L  D  I  A  E  E  F  A  R  E  Y  V  Y  L  P  F  D  N  E  K  V  P  H  V  V  C  V  V  Q  S  *  N  S  L  K  V  S  G  F  K  T  Q  S  L  L  C  I  L  *  K  L  W  F  *  S  C  I  E  F  H  S  S  *  E  I  M  *  R  C  F  T  I  C  N  K  F  V  E  A  G  C  N  W  I  S  F  L  A  S  T  Y  C  V  G  T  V  K  T  T  C  I  I  S  S  I  K  C  *  F  D  Y  Y  I  Q </first_frame>
            <second_frame>  I  :  L  H  H  H  L  Q  C  L  V  I  H  T  P  L  I  S  G  E  Y  F  P  N  Q  S  G  *  S  M  L  T  H  A  I  S  *  P  F  Q  F  P  S  F  C  L  S  L  F  L  S  S  S  I  L  L  F  K  P  L  S  F  T  P  I  P  T  F  L  T  D  T  H  L  T  F  P  S  P  S  S  P  P  L  T  H  M  T  R  F  G  I  *  P  N  R  I  P  S  P  F  F  F  S  L  C  T  P  F  *  L  L  F  C  L  F  W  R  W  L  Q  S  A  T  V  L  S  M  D  F  M  E  D  P  S  S  L  F  R  L  *  S  R  F  C  T  L  S  C  L  *  L  P  P  L  S  F  R  V  S  F  M  L  *  L  F  Y  C  L  G  Y  W  R  *  L  W  C  R  V  C  S  F  L  G  L  K  W  V  T  I  R  I  T  *  W  V  W  V  F  L  *  V  Y  L  L  Y  W  L  L  C  G  C  R  L  I  G  H  *  L  M  *  L  *  L  W  N  R  N  G  V  T  K  H  C  E  E  V  L  I  W  *  R  G  *  D  G  W  R  C  Q  C  C  Y  F  S  G  F  *  L  D  C  *  W  V  V  V  Q  V  F  W  *  V  *  E  L  L  V  V  G  G  Q  A  L  G  *  Y  C  R  W  W  *  V  R  A  S  L  L  S  *  C  F  R  T  L  Q  R  V  S  C  C  I  C  I  A  R  R  C  T  G  S  *  H  W  I  S  Q  R  S  L  L  A  S  M  S  T  C  L  L  T  M  R  R  F  L  M  L  Y  V  L  F  K  V  E  T  V  L  R  S  V  G  S  R  R  S  L  Y  F  V  F  C  R  N  Y  G  F  N  H  V  S  S  S  I  V  V  K  K  S  C  E  D  A  L  Q  Y  V  I  S  L  L  K  Q  V  A  I  G  S  L  F  *  L  L  H  I  V  *  V  L  *  K  L  L  V  S  F  P  Q  L  N  V  S  L  I  T  I  S   </second_frame>
            <third_frame>   F :   F  I  I  I  F  N  V  W  L  S  T  H  P  *  S  L  G  S  T  F  P  I  K  A  D  N  Q  C  S  L  T  P  F  L  S  P  F  S  F  L  P  F  A  S  L  F  F  S  H  H  L  S  Y  S  S  N  R  S  L  S  L  R  F  Q  P  F  *  P  T  P  I  S  P  F  L  L  L  L  H  L  H  *  P  I  *  P  D  S  E  S  D  P  T  G  F  P  V  P  S  S  S  P  C  V  H  P  F  S  F  C  S  V  S  F  G  V  G  Y  N  Q  L  Q  Y  F  P  W  I  L  W  K  T  R  Q  A  C  F  V  Y  E  V  G  F  V  L  F  L  A  S  N  C  H  P  Y  R  F  A  C  H  L  C  F  D  C  F  T  V  W  A  I  G  G  D  C  G  A  G  C  A  V  S  W  V  *  S  G  L  R  F  E  L  L  N  G  F  G  C  F  C  R  C  T  C  C  I  G  C  Y  V  V  A  G  *  L  V  I  S  L  C  D  C  S  C  G  I  E  M  G  L  P  S  I  A  K  K  C  L  F  G  E  G  D  E  M  G  G  V  V  S  V  A  I  F  R  G  S  D  W  I  V  S  G  W  L  F  K  F  S  G  E  C  R  S  C  *  W  W  V  D  K  L  W  G  D  I  A  D  G  G  E  F  G  L  R  Y  S  P  D  A  S  E  H  C  S  E  C  R  V  V  Y  V  L  Q  G  V  A  R  G  A  S  I  G  Y  R  R  G  V  C  S  R  V  C  L  L  A  F  *  Q  *  E  G  S  S  C  C  M  C  C  S  K  L  K  Q  S  *  G  Q  W  V  Q  D  A  V  F  T  L  Y  F  V  E  I  M  V  L  I  M  Y  R  V  P  *  *  L  R  N  H  V  K  M  L  Y  N  M  *  *  V  C  *  S  R  L  Q  L  D  L  F  S  S  F  Y  I  L  C  R  Y  C  K  N  Y  L  Y  H  F  L  N  *  M  L  V  *  L  L  Y  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9361" stop="9358"/>
                    <exon start="9059" stop="8008"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSSSSSSMSGYPHTLNLWGVLSQSKRIINAHSRHFLALSVSFLLPLSFSLIIYPTLQTALFHSDSNLFNRHPSHLSFSFFTSTDPYDPIRNLTQPDSQSLLLLLVYTLLASVLSLLALATISYSTFHGFYGRPVKLVSSMKSVLYSFLPLIATLIVSRVIYALIVLLFGLLAVIVVQGVQFLGFEVGYDSNYLMGLGVFVGVLVVLVVMWLQVNWSLAYVIVVVESKWGYQALRRSAYLVKGMRWVALSVLLFFGVLIGLLVGGCSSFLVSVGAASGGWTSFGVILQMVVSSGFATLLMLQNIAASVVLYMYCKALHGELALDIAEEFAREYVYLPFDNEKVPHVVCVVQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="10684" PGL_stop="11512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10684" e_stop="11512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="10684" e_stop="11512" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10684" stop="11396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11004" stop="11512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11004" stop="11512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAATGAACTTTTTCCTCTGTTAAACATCCTTTTTTTTCATTGAATTGAAGAAGAACTTGTGATTTTCATCTGATCCTGCCTTTGCTTCCTTGTAAATTTAGTCAATAGCTATGGAATTCTTATCTATTTTTGTGGAAAAACTAACTGATTGCTTGATCCAGCCAGTTGCGCGGCAGATTGGTTATTTCTACTACTACAAGAGAAACATGAGATGTATGGATAAAGAATGTGAGAAGCTGAAGAATATCAGAATGACAATGCAGCGAAAAGCGGAAGATGCCAGGAGAAACTTACAAGACATTTCACCTAATGGCAAGGTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</gDNA_template>
            <first_frame> L  Q  *  T  F  S  S  V  K  H  P  F  F  S  L  N  *  R  R  T  C  D  F  H  L  I  L  P  L  L  P  C  K  F  S  Q  *  L  W  N  S  Y  L  F  L  W  K  N  *  L  I  A  *  S  S  Q  L  R  G  R  L  V  I  S  T  T  T  R  E  T  *  D  V  W  I  K  N  V  R  S  *  R  I  S  E  *  Q  C  S  E  K  R  K  M  P  G  E  T  Y  K  T  F  H  L  M  A  R  F  G  *  L  V  L  I  Q  L  L  Q  M  W  K  A  *  C  E  V  *  L  R  L  K  G  V  A  S  M  V  C  A  R  I  *  S  H  V  T  R  *  V  G  E  L  R  K  L  H  W  S  *  L  N  F  K  M  K  A  I  S  L  M  F  C  H  L  I  I  Q  S  K  V  N  L  R  L  C  V  V  T  M  L  R  S  L  S  P  E  N  *  R  R  M  R  S  W  Q  L  *  E  M  T  R  L  L  L  L  G  Y  V  V  W  V  E  L  V  R  Q  H  *  L  R  K  S  D  K  W  R  K  K  K  G  C  L  K  M  L  S  W  *  L  S  V  N  K  *  T  L  K  E  F  R  M  R  L  Q  E  E  L  G  *  H  *  K  G  M  I  C  </first_frame>
            <second_frame>  C  N  E  L  F  P  L  L  N  I  L  F  F  H  *  I  E  E  E  L  V  I  F  I  *  S  C  L  C  F  L  V  N  L  V  N  S  Y  G  I  L  I  Y  F  C  G  K  T  N  *  L  L  D  P  A  S  C  A  A  D  W  L  F  L  L  L  Q  E  K  H  E  M  Y  G  *  R  M  *  E  A  E  E  Y  Q  N  D  N  A  A  K  S  G  R  C  Q  E  K  L  T  R  H  F  T  *  W  Q  G  L  V  N  *  C  *  Y  N  Y  C  R  C  G  R  R  D  A  R  C  S  *  G  *  K  G  L  L  L  W  C  V  P  E  F  E  V  T  L  L  D  E  *  E  S  *  E  N  Y  T  G  V  D  *  T  S  K  *  K  Q  *  A  *  C  F  V  I  *  S  S  S  R  K  *  T  *  G  Y  V  *  *  Q  C  *  G  V  *  V  Q  K  I  E  G  G  *  G  H  G  S  F  E  R  *  R  G  C  Y  Y  W  D  M  W  Y  G  W  S  W  *  D  N  T  D  *  E  N  Q  T  N  G  E  K  R  K  V  V  *  R  C  C  H  G  N  C  Q  S  T  N  R  L  *  K  N  S  G  *  D  C  R  R  S  W  A  D  I  R  R  G  *  F  V </second_frame>
            <third_frame>   A  M  N  F  F  L  C  *  T  S  F  F  F  I  E  L  K  K  N  L  *  F  S  S  D  P  A  F  A  S  L  *  I  *  S  I  A  M  E  F  L  S  I  F  V  E  K  L  T  D  C  L  I  Q  P  V  A  R  Q  I  G  Y  F  Y  Y  Y  K  R  N  M  R  C  M  D  K  E  C  E  K  L  K  N  I  R  M  T  M  Q  R  K  A  E  D  A  R  R  N  L  Q  D  I  S  P  N  G  K  V  W  L  T  S  V  D  T  T  T  A  D  V  E  G  V  M  R  G  V  A  E  V  E  R  G  C  F  Y  G  V  C  P  N  L  K  S  R  Y  S  M  S  R  R  A  K  K  I  T  L  E  L  I  E  L  Q  N  E  S  N  K  P  D  V  L  S  F  D  H  P  V  E  S  E  P  E  A  M  C  S  N  N  V  E  E  F  E  S  R  K  L  K  E  D  E  V  M  A  A  L  R  D  D  E  V  A  I  I  G  I  C  G  M  G  G  V  G  K  T  T  L  T  E  K  I  R  Q  M  A  K  K  E  R  L  F  K  D  V  V  M  V  I  V  S  Q  Q  I  D  F  K  R  I  Q  D  E  I  A  G  G  V  G  L  T  L  E  G  D  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10788" stop="11510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIAMEFLSIFVEKLTDCLIQPVARQIGYFYYYKRNMRCMDKECEKLKNIRMTMQRKAEDARRNLQDISPNGKVWLTSVDTTTADVEGVMRGVAEVERGCFYGVCPNLKSRYSMSRRAKKITLELIELQNESNKPDVLSFDHPVESEPEAMCSNNVEEFESRKLKEDEVMAALRDDEVAIIGICGMGGVGKTTLTEKIRQMAKKERLFKDVVMVIVSQQIDFKRIQDEIAGGVGLTLEGDDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="13395" PGL_stop="16763"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13395" e_stop="13541"/>
            <exon e_start="13694" e_stop="14197"/>
            <exon e_start="14422" e_stop="14919"/>
            <exon e_start="15600" e_stop="16100"/>
            <exon e_start="16288" e_stop="16763"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13395" e_stop="13541" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13542" i_stop="13693" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13694" e_stop="14197" e_length="504"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.779">
            <gDNA_intron_boundary i_start="14198" i_stop="14421" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14422" e_stop="14919" e_length="498"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.678">
            <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15600" e_stop="16100" e_length="501"/>
          </exon>
          <intron i_serial="4" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16288" e_stop="16763" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13395" stop="13541"/>
              <exon start="13694" stop="14188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13395" stop="13541"/>
              <exon start="13694" stop="14074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14168" stop="14197"/>
              <exon start="14422" stop="14919"/>
              <exon start="15600" stop="15673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14640" stop="14919"/>
              <exon start="15600" stop="15755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14664" stop="14919"/>
              <exon start="15600" stop="15813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14742" stop="14919"/>
              <exon start="15600" stop="16066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14845" stop="14919"/>
              <exon start="15600" stop="16100"/>
              <exon start="16288" stop="16659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14845" stop="14919"/>
              <exon start="15600" stop="16100"/>
              <exon start="16288" stop="16659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15785" stop="16100"/>
              <exon start="16288" stop="16666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15869" stop="16100"/>
              <exon start="16288" stop="16763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15869" stop="16100"/>
              <exon start="16288" stop="16762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAG : GTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAACTGCTCTGAAATGAAGGCGTTTGTCCAACAGGGAATATATGTGAGTACACCGAGTCTCGAAAGTGTAAACAATGATGATGAGGTGAAAGTGGTTGATCTCAATAAAGCGATGTTCAATTCTAAG : GTTTCGTGTCCCAGACTGGAAAAGCTACAACTCTTTTGTGCTCATAGTATAACTGCTCTATGCTCTCATCAACTTCCAACAGGCTACTTTAGCAAACTTGAAGCGTTGCATGTATCGTTTTGTGGAAATTTGAGAAACTTGATGTCTTCATCAGTGGCCAGGGGTGTTTTGAATCTCCAAATTCTACATATAGGATATTGCGAGTTGATGGAAGAAGTGATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG : GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG : GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAAA</gDNA_template>
            <first_frame> L  T  H  F  C  N  D  T  V  E  G  I  E  F  P  R  L  R  K  M  H  F  S  S  L  P  E  F  Q  N  F  W  H  T  A  N  N  S  I  T  D  S  N  P  L  F  D  E  K  :  V  S  C  P  N  L  E  D  L  Y  I  D  R  A  D  S  I  T  A  L  W  S  H  Q  L  P  T  T  Y  F  S  K  L  V  K  F  E  V  D  G  C  G  K  L  T  N  L  M  S  P  S  V  A  R  G  L  L  N  L  R  K  L  K  I  E  N  C  E  S  M  E  E  V  I  T  E  E  E  Q  Q  G  E  E  I  M  S  N  E  P  L  F  P  L  L  E  Q  L  N  L  Y  N  L  P  K  L  G  H  F  F  L  A  K  R  G  L  E  F  P  F  L  R  D  V  C  I  H  N  C  S  E  M  K  A  F  V  Q  Q  G  I  Y  V  S  T  P  S  L  E  S  V  N  N  D  D  E  V  K  V  V  D  L  N  K  A  M  F  N  S  K  :  V  S  C  P  R  L  E  K  L  Q  L  F  C  A  H  S  I  T  A  L  C  S  H  Q  L  P  T  G  Y  F  S  K  L  E  A  L  H  V  S  F  C  G  N  L  R  N  L  M  S  S  S  V  A  R  G  V  L  N  L  Q  I  L  H  I  G  Y  C  E  L  M  E  E  V  I  T  K  E  E  Q  G  E  E  I  M  T  N  E  P  L  F  P  L  L  E  E  L  R  L  Q  S  L  P  K  L  G  H  F  F  L  A  M  H  A  L  E  F  P  F  L  R  E  V  S  I  H  E  C  P  D  I  K  T  F  V  Q  Q  G  S  V  S  T  P  S  L  G  S  L  N  N  D  D  E  V  K  V  V  D  L  N  K  V  M  F  N  F  K  :  V  T  C  P  S  L  E  E  L  C  I  W  M  A  H  N  I  T  A  L  C  S  H  Q  L  P  T  A  Y  F  S  K  L  E  S  L  D  V  S  T  C  G  K  L  R  N  L  M  S  P  L  L  A  R  G  V  L  N  L  R  I  L  K  I  Q  D  C  Q  S  M  E  E  V  I  T  E  E  E  Q  G  E  N  M  T  N  G  P  L  F  P  R  L  E  Q  L  D  L  Y  D  L  P  K  L  G  H  F  F  Q  T  K  H  A  L  E  F  P  F  L  R  K  V  F  I  Y  S  C  P  S  M  K  T  F  G  L  G  S  V  S  T  P  S  L  E  S  V  N  Y  D  D  E  V  K  V  D  D  L  N  T  W  I  Q  Q  M  F  N  S  K  :  E  E  D  V  S  D  D  C  E  Y  E  K  D  V  T  D  G  N  E  S  E  E  D  L  S  D  G  C  K  S  E  Q  D  V  S  D  G  S  E  S  E  S  S  V  Q  *  R  Q  K  L  A  C  C  R  *  I  Q  S  Y  E  G  N  K  F  S  M  E  *  F  K  C  D  K  *  S  S  K  T  Y  I  C  S  L  W  K  Q  R  C  I  P  V  T  L  L  V  I  S  S  N  S  L  T  V  N  T  S  I  I  F  D  I  T  V  G  F  Y  K  L  *  I  L  N  P  T  I  C  C  S  F  F  F  H  L  Y  L  T  A  N  M  L  L  Y  F  L  M  *  S  C  I  L  C  R  F  E  R  F  K  K   </first_frame>
            <second_frame>  S  L  T  F  A  M  T  L  L  R  A  L  S  S  L  G  C  G  K  C  T  S  V  A  Y  Q  S  S  K  I  S  G  I  Q  P  T  T  L  S  L  T  Q  I  L  F  L  M  K  R :   F  L  V  P  T  W  K  I  C  I  S  I  G  L  T  A  *  L  L  S  G  L  T  N  F  Q  L  P  T  S  V  N  L  *  N  S  K  *  M  V  A  E  N  *  Q  T  *  C  L  H  Q  W  P  E  V  S  *  I  S  G  N  *  R  *  K  I  V  S  Q  W  K  K  *  S  Q  K  R  N  N  K  E  K  K  S  *  V  M  S  L  Y  S  P  C  W  N  S  *  T  F  T  I  C  Q  S  W  G  T  S  F  *  R  S  V  V  L  N  F  H  F  S  G  M  C  A  F  I  T  A  L  K  *  R  R  L  S  N  R  E  Y  M  *  V  H  R  V  S  K  V  *  T  M  M  M  R  *  K  W  L  I  S  I  K  R  C  S  I  L  R :   F  R  V  P  D  W  K  S  Y  N  S  F  V  L  I  V  *  L  L  Y  A  L  I  N  F  Q  Q  A  T  L  A  N  L  K  R  C  M  Y  R  F  V  E  I  *  E  T  *  C  L  H  Q  W  P  G  V  F  *  I  S  K  F  Y  I  *  D  I  A  S  *  W  K  K  *  S  Q  K  R  N  K  E  K  K  L  *  Q  M  S  P  Y  F  P  C  W  K  S  *  G  F  K  A  C  Q  S  W  G  I  S  F  S  L  C  T  L  L  N  F  H  F  S  E  K  C  R  F  M  N  A  L  I  *  R  R  L  S  N  R  D  L  *  V  H  R  V  S  E  V  *  T  M  M  M  R  *  K  *  L  I  S  I  K  *  C  S  I  L  R :   L  L  V  P  V  W  K  S  Y  V  S  G  W  L  T  T  *  L  L  Y  A  L  T  N  F  Q  L  P  T  L  A  N  L  K  V  W  M  Y  R  L  V  E  N  *  E  T  *  C  L  H  Y  W  L  E  V  F  *  I  S  E  Y  *  R  Y  K  T  V  N  Q  W  K  K  S  S  Q  K  R  N  K  E  K  I  *  L  M  G  P  Y  F  P  G  *  N  S  W  I  F  T  I  C  Q  S  W  G  I  S  F  R  R  S  M  L  L  N  F  H  F  S  G  K  C  L  F  I  A  A  L  Q  *  R  R  L  A  S  V  L  *  A  H  R  V  S  K  V  *  T  M  M  M  R  *  K  *  M  I  *  I  H  G  Y  N  R  C  S  I  L  R :   K  K  M  *  V  M  T  V  N  M  K  K  T  L  L  T  V  M  N  L  K  K  I  *  V  M  A  V  N  L  N  K  M  *  V  M  A  V  N  L  N  L  Q  S  S  E  G  R  S  *  H  V  V  D  E  S  K  A  M  K  V  I  S  S  R  W  N  S  L  S  V  T  S  E  A  R  R  P  I  Y  A  R  Y  G  S  R  D  V  Y  L  *  L  Y  *  *  Y  L  V  I  P  *  L  *  T  Q  V  L  F  L  I  S  L  *  D  S  I  N  F  K  F  *  I  R  L  Y  V  V  H  S  S  F  I  Y  I  *  Q  L  I  C  C  F  I  F  S  C  N  L  A  F  C  V  V  L  K  D  L  K  K  </second_frame>
            <third_frame>   H  S  L  L  Q  *  H  C  *  G  H  *  V  P  S  V  A  E  N  A  L  Q  *  L  T  R  V  P  K  F  L  A  Y  S  Q  Q  L  Y  H  *  L  K  S  S  F  *  *  K   : G  F  L  S  Q  P  G  R  S  V  Y  R  *  G  *  Q  H  N  C  S  L  V  S  P  T  S  N  Y  L  L  Q  *  T  C  K  I  R  S  R  W  L  R  K  I  D  K  L  D  V  S  I  S  G  Q  R  S  P  E  S  P  E  T  K  D  R  K  L  *  V  N  G  R  S  D  H  R  R  G  T  T  R  R  R  N  H  E  *  *  A  F  I  P  P  V  G  T  A  E  P  L  Q  S  A  K  A  G  A  L  L  S  S  E  A  W  S  *  I  S  I  S  Q  G  C  V  H  S  *  L  L  *  N  E  G  V  C  P  T  G  N  I  C  E  Y  T  E  S  R  K  C  K  Q  *  *  *  G  E  S  G  *  S  Q  *  S  D  V  Q  F  *   : G  F  V  S  Q  T  G  K  A  T  T  L  L  C  S  *  Y  N  C  S  M  L  S  S  T  S  N  R  L  L  *  Q  T  *  S  V  A  C  I  V  L  W  K  F  E  K  L  D  V  F  I  S  G  Q  G  C  F  E  S  P  N  S  T  Y  R  I  L  R  V  D  G  R  S  D  H  K  R  G  T  R  R  R  N  Y  D  K  *  A  L  I  S  P  V  G  R  V  E  A  S  K  P  A  K  A  G  A  F  L  S  R  Y  A  R  S  *  I  S  I  S  Q  R  S  V  D  S  *  M  P  *  Y  K  D  V  C  P  T  G  I  C  E  Y  T  E  S  R  K  F  E  Q  *  *  *  G  E  S  S  *  S  Q  *  S  D  V  Q  F  *   : G  Y  L  S  Q  S  G  R  A  M  Y  L  D  G  S  Q  H  N  C  S  M  L  S  P  T  S  N  C  L  L  *  Q  T  *  K  F  G  C  I  D  L  W  K  I  E  K  L  D  V  S  I  T  G  *  R  C  F  E  S  P  N  T  K  D  T  R  L  S  I  N  G  R  S  H  H  R  R  G  T  R  R  K  Y  D  *  W  A  L  I  S  P  V  R  T  A  G  S  L  R  S  A  K  A  G  A  F  L  S  D  E  A  C  S  *  I  S  I  S  Q  E  S  V  Y  L  *  L  P  F  N  E  D  V  W  P  R  F  C  E  H  T  E  S  R  K  C  E  L  *  *  *  G  E  S  R  *  S  E  Y  M  D  T  T  D  V  Q  F  *   : G  R  R  C  K  *  *  L  *  I  *  K  R  R  Y  *  R  *  *  I  *  R  R  F  K  *  W  L  *  I  *  T  R  C  K  *  W  Q  *  I  *  I  F  S  P  V  K  A  E  A  S  M  L  S  M  N  P  K  L  *  R  *  *  V  L  D  G  I  V  *  V  *  Q  V  K  L  E  D  L  Y  M  L  V  M  E  A  E  M  Y  T  C  N  F  I  S  N  I  *  *  F  L  D  C  E  H  K  Y  Y  F  *  Y  H  C  R  I  L  *  T  L  N  F  E  S  D  Y  M  L  F  I  L  L  S  F  I  F  N  S  *  Y  V  A  L  F  S  H  V  I  L  H  S  V  S  F  *  K  I  *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13395" stop="13541"/>
                    <exon start="13694" stop="14197"/>
                    <exon start="14422" stop="14919"/>
                    <exon start="15600" stop="16100"/>
                    <exon start="16288" stop="16425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1785</number_coding_nucleotides>
                  <number_encoded_amino_acids>595</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTHFCNDTVEGIEFPRLRKMHFSSLPEFQNFWHTANNSITDSNPLFDEKVSCPNLEDLYIDRADSITALWSHQLPTTYFSKLVKFEVDGCGKLTNLMSPSVARGLLNLRKLKIENCESMEEVITEEEQQGEEIMSNEPLFPLLEQLNLYNLPKLGHFFLAKRGLEFPFLRDVCIHNCSEMKAFVQQGIYVSTPSLESVNNDDEVKVVDLNKAMFNSKVSCPRLEKLQLFCAHSITALCSHQLPTGYFSKLEALHVSFCGNLRNLMSSSVARGVLNLQILHIGYCELMEEVITKEEQGEEIMTNEPLFPLLEELRLQSLPKLGHFFLAMHALEFPFLREVSIHECPDIKTFVQQGSVSTPSLGSLNNDDEVKVVDLNKVMFNFKVTCPSLEELCIWMAHNITALCSHQLPTAYFSKLESLDVSTCGKLRNLMSPLLARGVLNLRILKIQDCQSMEEVITEEEQGENMTNGPLFPRLEQLDLYDLPKLGHFFQTKHALEFPFLRKVFIYSCPSMKTFGLGSVSTPSLESVNYDDEVKVDDLNTWIQQMFNSKEEDVSDDCEYEKDVTDGNESEEDLSDGCKSEQDVSDGSESESSVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="18856" PGL_stop="19503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18856" e_stop="19503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="18856" e_stop="19503" e_length="648"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18856" stop="19503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18856" stop="19363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGCTTGCAATTGTTACAGTTGCAGGAGCACTAAAGCTTAAAACTAAGCCTTCGTGGGAGGATGCCCTCAAACAATTACGCAATGCAGAAACAAGAAATATCCCTGATGTGCACACAAAGGTGTATAGACCTCTGAGGCTAAGCTATGATCACTTGGAAAGTGATGAAGCCAGGTACATCTTTTTGCTTTGTTCTTTGTTTGAGGAAGATAGTGATATTTCGACTGAAGAATTACTTAGATATGGAATGGGGCTTGGCATCTTTTTGGAAATTAAAAATATAGAAGGAGCAAGAAATAGAGTGTGTCATCTGTTAGAAACACTGAAAGATCGTTTCTTGTTATCCCAAGGTTCAAACAGAAATTCTGTCAAAATGCATGATGTAGTTCGTGATGTGGCTATATATATTGCGTCTGAGGGAAAGCATATATTTATGGTAAGTCATGATGTGAACTCAGAAGAGTTCCCAAGAAAAGATTCTTACGAGCAATATAGTCACGTCTCAATTGTTGCAAATAAATTTGATGAGCATCCTAGCCCAATAATTGGCCCAAATTTGAAGCTTCTAATGTTGAAACTCTATTTTAAAGAGCCAATCAAATTACAAGACGATTTTTTTGATGGGATGAGTAAACTCAATGTCTTAAG</gDNA_template>
            <first_frame> A  A  C  N  C  Y  S  C  R  S  T  K  A  *  N  *  A  F  V  G  G  C  P  Q  T  I  T  Q  C  R  N  K  K  Y  P  *  C  A  H  K  G  V  *  T  S  E  A  K  L  *  S  L  G  K  *  *  S  Q  V  H  L  F  A  L  F  F  V  *  G  R  *  *  Y  F  D  *  R  I  T  *  I  W  N  G  A  W  H  L  F  G  N  *  K  Y  R  R  S  K  K  *  S  V  S  S  V  R  N  T  E  R  S  F  L  V  I  P  R  F  K  Q  K  F  C  Q  N  A  *  C  S  S  *  C  G  Y  I  Y  C  V  *  G  K  A  Y  I  Y  G  K  S  *  C  E  L  R  R  V  P  K  K  R  F  L  R  A  I  *  S  R  L  N  C  C  K  *  I  *  *  A  S  *  P  N  N  W  P  K  F  E  A  S  N  V  E  T  L  F  *  R  A  N  Q  I  T  R  R  F  F  *  W  D  E  *  T  Q  C  L  K </first_frame>
            <second_frame>  P  L  A  I  V  T  V  A  G  A  L  K  L  K  T  K  P  S  W  E  D  A  L  K  Q  L  R  N  A  E  T  R  N  I  P  D  V  H  T  K  V  Y  R  P  L  R  L  S  Y  D  H  L  E  S  D  E  A  R  Y  I  F  L  L  C  S  L  F  E  E  D  S  D  I  S  T  E  E  L  L  R  Y  G  M  G  L  G  I  F  L  E  I  K  N  I  E  G  A  R  N  R  V  C  H  L  L  E  T  L  K  D  R  F  L  L  S  Q  G  S  N  R  N  S  V  K  M  H  D  V  V  R  D  V  A  I  Y  I  A  S  E  G  K  H  I  F  M  V  S  H  D  V  N  S  E  E  F  P  R  K  D  S  Y  E  Q  Y  S  H  V  S  I  V  A  N  K  F  D  E  H  P  S  P  I  I  G  P  N  L  K  L  L  M  L  K  L  Y  F  K  E  P  I  K  L  Q  D  D  F  F  D  G  M  S  K  L  N  V  L   </second_frame>
            <third_frame>   R  L  Q  L  L  Q  L  Q  E  H  *  S  L  K  L  S  L  R  G  R  M  P  S  N  N  Y  A  M  Q  K  Q  E  I  S  L  M  C  T  Q  R  C  I  D  L  *  G  *  A  M  I  T  W  K  V  M  K  P  G  T  S  F  C  F  V  L  C  L  R  K  I  V  I  F  R  L  K  N  Y  L  D  M  E  W  G  L  A  S  F  W  K  L  K  I  *  K  E  Q  E  I  E  C  V  I  C  *  K  H  *  K  I  V  S  C  Y  P  K  V  Q  T  E  I  L  S  K  C  M  M  *  F  V  M  W  L  Y  I  L  R  L  R  E  S  I  Y  L  W  *  V  M  M  *  T  Q  K  S  S  Q  E  K  I  L  T  S  N  I  V  T  S  Q  L  L  Q  I  N  L  M  S  I  L  A  Q  *  L  A  Q  I  *  S  F  *  C  *  N  S  I  L  K  S  Q  S  N  Y  K  T  I  F  L  M  G  *  V  N  S  M  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18857" stop="19501"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>645</number_coding_nucleotides>
                  <number_encoded_amino_acids>215</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLAIVTVAGALKLKTKPSWEDALKQLRNAETRNIPDVHTKVYRPLRLSYDHLESDEARYIFLLCSLFEEDSDISTEELLRYGMGLGIFLEIKNIEGARNRVCHLLETLKDRFLLSQGSNRNSVKMHDVVRDVAIYIASEGKHIFMVSHDVNSEEFPRKDSYEQYSHVSIVANKFDEHPSPIIGPNLKLLMLKLYFKEPIKLQDDFFDGMSKLNVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="19527" PGL_stop="20218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19527" e_stop="20218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="19527" e_stop="20218" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19527" stop="20218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19562" stop="20037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19562" stop="20037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTTTTCCAGTATCCATTCAGAGGTTGTCGAATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGATCCGCCACCTGTTGAGCAAGAGCGAACTTGTACATTCAACCGGAGAGGGAACCAAGAACGTGCTGGCCGAGTTGCAGCTGGATGAATTTCAGAATGTGAAATATCTCTGCCTGAAATCTTTTGATTCATTGACACATATCCAATGTCAGAATAATGTTTCATTTCCCAAACTCGAAAAACTG</gDNA_template>
            <first_frame> F  G  L  F  Q  Y  P  F  R  G  C  R  I  *  G  R  C  V  *  V  I  *  G  W  R  T  Y  P  L  L  V  N  L  S  L  *  R  F  L  A  *  E  I  L  S  *  R  S  C  P  R  R  *  V  N  *  L  I  *  S  C  *  S  C  G  M  R  K  N  H  W  K  *  F  H  Q  G  S  Y  Q  D  *  F  D  W  R  N  Y  I  *  *  M  *  E  I  V  V  T  P  P  *  R  N  *  N  P  Y  R  D  *  L  H  *  H  *  V  N  V  P  E  M  *  S  T  V  T  W  A  L  P  P  S  *  H  S  L  Q  L  Q  W  V  K  L  T  E  R  L  Q  A  W  M  I  T  T  R  I  F  L  *  R  S  P  R  L  P  H  *  V  I  G  S  A  T  C  *  A  R  A  N  L  Y  I  Q  P  E  R  E  P  R  T  C  W  P  S  C  S  W  M  N  F  R  M  *  N  I  S  A  *  N  L  L  I  H  *  H  I  S  N  V  R  I  M  F  H  F  P  N  S  K  N   </first_frame>
            <second_frame>  L  A  F  S  S  I  H  S  E  V  V  E  S  E  D  V  V  S  E  *  F  K  V  G  G  H  I  H  Y  W  S  T  C  H  F  R  D  S  *  H  K  R  F  S  V  R  G  A  A  Q  G  D  R  *  I  D  *  S  N  H  V  R  V  A  E  *  E  K  T  T  G  N  D  F  T  R  G  L  I  K  T  S  S  I  G  G  T  T  Y  N  E  C  K  K  L  *  L  L  H  L  E  G  T  R  I  L  I  E  I  D  C  T  D  I  K  *  M  F  R  R  C  D  L  Q  *  H  G  P  Y  L  Q  V  D  T  V  C  N  Y  S  G  *  S  L  Q  S  D  S  K  H  G  *  L  R  Q  E  Y  F  F  R  G  H  R  D  C  P  I  R  *  L  D  P  P  P  V  E  Q  E  R  T  C  T  F  N  R  R  G  N  Q  E  R  A  G  R  V  A  A  G  *  I  S  E  C  E  I  S  L  P  E  I  F  *  F  I  D  T  Y  P  M  S  E  *  C  F  I  S  Q  T  R  K  T  </second_frame>
            <third_frame>   W  P  F  P  V  S  I  Q  R  L  S  N  L  R  T  L  C  L  S  N  L  R  L  E  D  I  S  I  I  G  Q  L  V  T  L  E  I  L  S  I  R  D  S  Q  L  E  E  L  P  K  E  I  G  K  L  T  N  L  I  M  L  E  L  R  N  E  K  K  P  L  E  M  I  S  P  G  V  L  S  R  L  V  R  L  E  E  L  H  I  M  N  V  R  N  C  S  Y  S  T  L  K  E  L  E  S  L  S  R  L  T  A  L  T  L  S  E  C  S  G  D  V  I  Y  S  N  M  G  L  T  S  K  L  T  Q  F  A  I  T  V  G  K  A  Y  R  A  T  P  S  M  D  D  Y  D  K  N  I  S  L  E  V  T  E  T  A  P  L  G  D  W  I  R  H  L  L  S  K  S  E  L  V  H  S  T  G  E  G  T  K  N  V  L  A  E  L  Q  L  D  E  F  Q  N  V  K  Y  L  C  L  K  S  F  D  S  L  T  H  I  Q  C  Q  N  N  V  S  F  P  K  L  E  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19529" stop="20218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPFPVSIQRLSNLRTLCLSNLRLEDISIIGQLVTLEILSIRDSQLEELPKEIGKLTNLIMLELRNEKKPLEMISPGVLSRLVRLEELHIMNVRNCSYSTLKELESLSRLTALTLSECSGDVIYSNMGLTSKLTQFAITVGKAYRATPSMDDYDKNISLEVTETAPLGDWIRHLLSKSELVHSTGEGTKNVLAELQLDEFQNVKYLCLKSFDSLTHIQCQNNVSFPKLEKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="25899" PGL_stop="26880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25899" e_stop="26133"/>
            <exon e_start="26848" e_stop="26880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.606"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="25899" e_stop="26133" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26134" i_stop="26847" i_length="714"/>
          </intron>
          <exon e_serial="2" e_score="0.606">
            <gDNA_exon_boundary e_start="26848" e_stop="26880" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25899" stop="26133"/>
              <exon start="26848" stop="26880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTTATAAAATTCACTTTCAAGGCCCTACATTTTACAATTGATTTCAAATAAGTCCATCATTCTCCGGCGAACTCCTCGGGATCTCCTTTCCTTCCTCCGACGTAATCCAGCCGTAAGTTCCGCCATTTCTGTTCTACATTTTCTGCTCTTTTTCAGATAAAAACCCTAACTCCTCTTATGTATTTAATTTTGCTTCACATTTCGTAAAAACTATGAATTTTTGGAGGTTTA : AAAATAAAAGCATAATACTGAATGAAATGTAAA</gDNA_template>
            <first_frame> K  L  Y  K  I  H  F  Q  G  P  T  F  Y  N  *  F  Q  I  S  P  S  F  S  G  E  L  L  G  I  S  F  P  S  S  D  V  I  Q  P  *  V  P  P  F  L  F  Y  I  F  C  S  F  S  D  K  N  P  N  S  S  Y  V  F  N  F  A  S  H  F  V  K  T  M  N  F  W  R  F   : K  N  K  S  I  I  L  N  E  M  *  </first_frame>
            <second_frame>  N  F  I  K  F  T  F  K  A  L  H  F  T  I  D  F  K  *  V  H  H  S  P  A  N  S  S  G  S  P  F  L  P  P  T  *  S  S  R  K  F  R  H  F  C  S  T  F  S  A  L  F  Q  I  K  T  L  T  P  L  M  Y  L  I  L  L  H  I  S  *  K  L  *  I  F  G  G  L  :  K  I  K  A  *  Y  *  M  K  C  K </second_frame>
            <third_frame>   T  L  *  N  S  L  S  R  P  Y  I  L  Q  L  I  S  N  K  S  I  I  L  R  R  T  P  R  D  L  L  S  F  L  R  R  N  P  A  V  S  S  A  I  S  V  L  H  F  L  L  F  F  R  *  K  P  *  L  L  L  C  I  *  F  C  F  T  F  R  K  N  Y  E  F  L  E  V  * :   K  *  K  H  N  T  E  *  N  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0101P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="28785" PGL_stop="28494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28785" e_stop="28494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="28785" e_stop="28494" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28785" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28784" stop="28610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207313" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGACGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCTGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  *  N  C  *  N  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  T  W  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  A  Y  V  R  A  K  D  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  L  T  C  G  L  R  T  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  L  K  L  L  K  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0101P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="33429" PGL_stop="34188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33429" e_stop="34188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="33429" e_stop="34188" e_length="760"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33429" stop="34188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33429" stop="34151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATAGCATCTTTACAGAAAGTAAGTTTCTTCTAGCTGATTCCTTGCTACAGTTGGCACGGGCTCTCATATGGGCTGCAGGAAGACCTCAGAAGGGTAGTAGTTCTCCTGAAGATGAAGACACTGCAGTATTCTGCTTGGAACTGCTGATTGCAATCACCTTGAACAACAGAGATAGAATTAGACTTCTTTGGCAGGGAGTTTATGAGCATATTGCTAGTATTGTCCACTCAACAGTAATGCCTTGTGCTTTGATTGAGAAAGCTATATTTGGACTCCTTCGCATCTGCCTGAGGTTGCTTCCCTATAAAGAGAACTTAGCTGATGAACTTTTGAGATCACTACAACTTGTTCTCAAGCTTGATGCCCGGGTTGCTGATGCATACTGTGAGCAGATTACACAGGAAGTCAGTCGGCTTGTTAAAGCAAATGCCACACACATTCGTTCTCAAATGGGATGGCGAACAATTACTCTTTTACTTTCTATCACAGCAAGACATCCAGAAGCTTCTGAAGCAGGATTCAATGCCCTGGTTTTCATTATGTCTGATGGAGCCCATTTGTCCCCAGCTAATTATGTTCTTTGCATCGATGCAGCTAGAAATTTTGCAGAGTCTCGTGTTGGACCTGCGGATAGACCTGCTCGTGCAGTGGATCTTATGGCAGGTTCAGTTGCTAGTTTAGCATGCTGGTCCAAAGATACTAGGGAAGCTCTGGCAGAGACTGAAGCTGTGAAGTTGTCCCAAGATATCGGAGACATG</gDNA_template>
            <first_frame> *  *  H  L  Y  R  K  *  V  S  S  S  *  F  L  A  T  V  G  T  G  S  H  M  G  C  R  K  T  S  E  G  *  *  F  S  *  R  *  R  H  C  S  I  L  L  G  T  A  D  C  N  H  L  E  Q  Q  R  *  N  *  T  S  L  A  G  S  L  *  A  Y  C  *  Y  C  P  L  N  S  N  A  L  C  F  D  *  E  S  Y  I  W  T  P  S  H  L  P  E  V  A  S  L  *  R  E  L  S  *  *  T  F  E  I  T  T  T  C  S  Q  A  *  C  P  G  C  *  C  I  L  *  A  D  Y  T  G  S  Q  S  A  C  *  S  K  C  H  T  H  S  F  S  N  G  M  A  N  N  Y  S  F  T  F  Y  H  S  K  T  S  R  S  F  *  S  R  I  Q  C  P  G  F  H  Y  V  *  W  S  P  F  V  P  S  *  L  C  S  L  H  R  C  S  *  K  F  C  R  V  S  C  W  T  C  G  *  T  C  S  C  S  G  S  Y  G  R  F  S  C  *  F  S  M  L  V  Q  R  Y  *  G  S  S  G  R  D  *  S  C  E  V  V  P  R  Y  R  R  H  </first_frame>
            <second_frame>  D  S  I  F  T  E  S  K  F  L  L  A  D  S  L  L  Q  L  A  R  A  L  I  W  A  A  G  R  P  Q  K  G  S  S  S  P  E  D  E  D  T  A  V  F  C  L  E  L  L  I  A  I  T  L  N  N  R  D  R  I  R  L  L  W  Q  G  V  Y  E  H  I  A  S  I  V  H  S  T  V  M  P  C  A  L  I  E  K  A  I  F  G  L  L  R  I  C  L  R  L  L  P  Y  K  E  N  L  A  D  E  L  L  R  S  L  Q  L  V  L  K  L  D  A  R  V  A  D  A  Y  C  E  Q  I  T  Q  E  V  S  R  L  V  K  A  N  A  T  H  I  R  S  Q  M  G  W  R  T  I  T  L  L  L  S  I  T  A  R  H  P  E  A  S  E  A  G  F  N  A  L  V  F  I  M  S  D  G  A  H  L  S  P  A  N  Y  V  L  C  I  D  A  A  R  N  F  A  E  S  R  V  G  P  A  D  R  P  A  R  A  V  D  L  M  A  G  S  V  A  S  L  A  C  W  S  K  D  T  R  E  A  L  A  E  T  E  A  V  K  L  S  Q  D  I  G  D  M </second_frame>
            <third_frame>   I  A  S  L  Q  K  V  S  F  F  *  L  I  P  C  Y  S  W  H  G  L  S  Y  G  L  Q  E  D  L  R  R  V  V  V  L  L  K  M  K  T  L  Q  Y  S  A  W  N  C  *  L  Q  S  P  *  T  T  E  I  E  L  D  F  F  G  R  E  F  M  S  I  L  L  V  L  S  T  Q  Q  *  C  L  V  L  *  L  R  K  L  Y  L  D  S  F  A  S  A  *  G  C  F  P  I  K  R  T  *  L  M  N  F  *  D  H  Y  N  L  F  S  S  L  M  P  G  L  L  M  H  T  V  S  R  L  H  R  K  S  V  G  L  L  K  Q  M  P  H  T  F  V  L  K  W  D  G  E  Q  L  L  F  Y  F  L  S  Q  Q  D  I  Q  K  L  L  K  Q  D  S  M  P  W  F  S  L  C  L  M  E  P  I  C  P  Q  L  I  M  F  F  A  S  M  Q  L  E  I  L  Q  S  L  V  L  D  L  R  I  D  L  L  V  Q  W  I  L  W  Q  V  Q  L  L  V  *  H  A  G  P  K  I  L  G  K  L  W  Q  R  L  K  L  *  S  C  P  K  I  S  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33430" stop="34188"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSIFTESKFLLADSLLQLARALIWAAGRPQKGSSSPEDEDTAVFCLELLIAITLNNRDRIRLLWQGVYEHIASIVHSTVMPCALIEKAIFGLLRICLRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITLLLSITARHPEASEAGFNALVFIMSDGAHLSPANYVLCIDAARNFAESRVGPADRPARAVDLMAGSVASLACWSKDTREALAETEAVKLSQDIGDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="37972" PGL_stop="35380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37972" e_stop="37849"/>
            <exon e_start="36623" e_stop="36414"/>
            <exon e_start="35798" e_stop="35722"/>
            <exon e_start="35634" e_stop="35380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.976"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="0.967"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.935"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="37972" e_stop="37849" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="37848" i_stop="36624" i_length="1225"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="36623" e_stop="36414" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="36413" i_stop="35799" i_length="615"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="35798" e_stop="35722" e_length="77"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="35721" i_stop="35635" i_length="87"/>
          </intron>
          <exon e_serial="4" e_score="0.953">
            <gDNA_exon_boundary e_start="35634" e_stop="35380" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37972" stop="37849"/>
              <exon start="36623" stop="36414"/>
              <exon start="35798" stop="35722"/>
              <exon start="35634" stop="35380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614853" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTGGTCGTACAAAATGCATAGCTGAAGATATCAAGAGTCATTCCATGACTGTTGGCAAATATCATATTGTCAATCCCAATGAATCACATCCTTTGCCAGATACTCACAAAGTCACTCTCAGG : GTGACATCTACACATGGGAATACCTTTCACTATGCTGATAATGTTCATGAGGGGCATTTTGCTTTTGAGACAACAGAAGCTGGGGATTATATGGCTTGCTTCTATGCTGCTGATCACAAGCCTCCCGTTACTATGACTATTAATTTCGACTGGAAGAGTGGTGTAGCTGCTAAGGACTGGACAAATGTTGCCAAGAAAGGCTCTATTGAT : CTTATGGAACTTGAACTGAAGAAGATGTATGAACATGTTCAAAGCATCCATGACGAGATGTTTTATCTACGTGAAAG : GGAGGAAGAAATGCAAGAACTTAACAGATCAACCAACTCCAAAATGGCCTGGATGACTGGACTGTCAATCTGTGTATGCTTATCTGTAGCAGGATTGCAATTGTGGCATTTGAAAACCTTTTTCGAAAAGAAGAAGCTAATCTAATGTTATTCTCATATTTTCACTACCCTCACGTTCGAGTAGAATCTTTTATAGACAACACAATAGTTAGAAGGAAAGTTGTGTTACATGTACTATGTGGTAGAAAATTGCAT</gDNA_template>
            <first_frame> I  W  S  Y  K  M  H  S  *  R  Y  Q  E  S  F  H  D  C  W  Q  I  S  Y  C  Q  S  Q  *  I  T  S  F  A  R  Y  S  Q  S  H  S  Q   : G  D  I  Y  T  W  E  Y  L  S  L  C  *  *  C  S  *  G  A  F  C  F  *  D  N  R  S  W  G  L  Y  G  L  L  L  C  C  *  S  Q  A  S  R  Y  Y  D  Y  *  F  R  L  E  E  W  C  S  C  *  G  L  D  K  C  C  Q  E  R  L  Y  *   : S  Y  G  T  *  T  E  E  D  V  *  T  C  S  K  H  P  *  R  D  V  L  S  T  *  K  :  G  G  R  N  A  R  T  *  Q  I  N  Q  L  Q  N  G  L  D  D  W  T  V  N  L  C  M  L  I  C  S  R  I  A  I  V  A  F  E  N  L  F  R  K  E  E  A  N  L  M  L  F  S  Y  F  H  Y  P  H  V  R  V  E  S  F  I  D  N  T  I  V  R  R  K  V  V  L  H  V  L  C  G  R  K  L  H </first_frame>
            <second_frame>  S  G  R  T  K  C  I  A  E  D  I  K  S  H  S  M  T  V  G  K  Y  H  I  V  N  P  N  E  S  H  P  L  P  D  T  H  K  V  T  L  R  :  V  T  S  T  H  G  N  T  F  H  Y  A  D  N  V  H  E  G  H  F  A  F  E  T  T  E  A  G  D  Y  M  A  C  F  Y  A  A  D  H  K  P  P  V  T  M  T  I  N  F  D  W  K  S  G  V  A  A  K  D  W  T  N  V  A  K  K  G  S  I  D  :  L  M  E  L  E  L  K  K  M  Y  E  H  V  Q  S  I  H  D  E  M  F  Y  L  R  E  R :   E  E  E  M  Q  E  L  N  R  S  T  N  S  K  M  A  W  M  T  G  L  S  I  C  V  C  L  S  V  A  G  L  Q  L  W  H  L  K  T  F  F  E  K  K  K  L  I  *  C  Y  S  H  I  F  T  T  L  T  F  E  *  N  L  L  *  T  T  Q  *  L  E  G  K  L  C  Y  M  Y  Y  V  V  E  N  C   </second_frame>
            <third_frame>   L  V  V  Q  N  A  *  L  K  I  S  R  V  I  P  *  L  L  A  N  I  I  L  S  I  P  M  N  H  I  L  C  Q  I  L  T  K  S  L  S  G :   *  H  L  H  M  G  I  P  F  T  M  L  I  M  F  M  R  G  I  L  L  L  R  Q  Q  K  L  G  I  I  W  L  A  S  M  L  L  I  T  S  L  P  L  L  *  L  L  I  S  T  G  R  V  V  *  L  L  R  T  G  Q  M  L  P  R  K  A  L  L  I :   L  W  N  L  N  *  R  R  C  M  N  M  F  K  A  S  M  T  R  C  F  I  Y  V  K   : G  R  K  K  C  K  N  L  T  D  Q  P  T  P  K  W  P  G  *  L  D  C  Q  S  V  Y  A  Y  L  *  Q  D  C  N  C  G  I  *  K  P  F  S  K  R  R  S  *  S  N  V  I  L  I  F  S  L  P  S  R  S  S  R  I  F  Y  R  Q  H  N  S  *  K  E  S  C  V  T  C  T  M  W  *  K  I  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37971" stop="37849"/>
                    <exon start="36623" stop="36414"/>
                    <exon start="35798" stop="35722"/>
                    <exon start="35634" stop="35490"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGRTKCIAEDIKSHSMTVGKYHIVNPNESHPLPDTHKVTLRVTSTHGNTFHYADNVHEGHFAFETTEAGDYMACFYAADHKPPVTMTINFDWKSGVAAKDWTNVAKKGSIDLMELELKKMYEHVQSIHDEMFYLREREEEMQELNRSTNSKMAWMTGLSICVCLSVAGLQLWHLKTFFEKKKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="44503" PGL_stop="41073"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44503" e_stop="44241"/>
            <exon e_start="42932" e_stop="42859"/>
            <exon e_start="41379" e_stop="41073"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.798" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44503" e_stop="44241" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44240" i_stop="42933" i_length="1308"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42932" e_stop="42859" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.798">
            <gDNA_intron_boundary i_start="42858" i_stop="41380" i_length="1479"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41379" e_stop="41073" e_length="307"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44503" stop="44241"/>
              <exon start="42932" stop="42859"/>
              <exon start="41379" stop="41126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44498" stop="44241"/>
              <exon start="42932" stop="42859"/>
              <exon start="41379" stop="41115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44493" stop="44241"/>
              <exon start="42932" stop="42859"/>
              <exon start="41379" stop="41073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44479" stop="44241"/>
              <exon start="42932" stop="42859"/>
              <exon start="41379" stop="41149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44471" stop="44241"/>
              <exon start="42932" stop="42859"/>
              <exon start="41379" stop="41323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44467" stop="44241"/>
              <exon start="42932" stop="42859"/>
              <exon start="41379" stop="41149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAGCACGGCCAAAACCCAGCAAAAATGGCGTTAAGGGGAACGATGCTACGAACCGCCGGGAAGTTCGCCGGCGTGAACTCCAGTCTCCGACGATTTGCCCACATCACTTCCCGTCCGGCGCCTCTAGATAGCGTGGTTGATCGGCCGACGGCGACATCACCGTCGTTGGTTTTACCTGAAAATGAGAATAACAGCAATATGTTTCCAAATTCACCTTTCAATTGGGGGTCCATGGAGCTTATGGCTGTCCCTAAGAAGAAG : GTTTCTCCTCACAAGAGAGGCATAAGGAATGGACCAAAGGCTCTAAAACCCGTTCCAGTGATTATTCGTTGCAA : GGCTTGTGGTCGAGTCAAGTTGCCACATTTCTTTTGTTGCAGTGGGATTAAGCAAAACCCTGGTGAAGAGAACAATTCCACCGGTTGATCAAATCGAAGGGATTATTTTCTTCATTTTCAAATCCCTTTCTTTGTAGTAGAATCTCCGGTTAGAAACTAGGAAGGCTACGTTATATCATGCCGGCATTGTGTACAATAGTGTAGTCATTGCAGCATGTACTCAAATTCTATATCAGTTGCTTTATTTCACTTCAATTGGTGACAAGTAAATCTTGCCAAATAATAAGAATTGGAGACTAGAAAGCAT</gDNA_template>
            <first_frame> L  S  T  A  K  T  Q  Q  K  W  R  *  G  E  R  C  Y  E  P  P  G  S  S  P  A  *  T  P  V  S  D  D  L  P  T  S  L  P  V  R  R  L  *  I  A  W  L  I  G  R  R  R  H  H  R  R  W  F  Y  L  K  M  R  I  T  A  I  C  F  Q  I  H  L  S  I  G  G  P  W  S  L  W  L  S  L  R  R  R :   F  L  L  T  R  E  A  *  G  M  D  Q  R  L  *  N  P  F  Q  *  L  F  V  A   : R  L  V  V  E  S  S  C  H  I  S  F  V  A  V  G  L  S  K  T  L  V  K  R  T  I  P  P  V  D  Q  I  E  G  I  I  F  F  I  F  K  S  L  S  L  *  *  N  L  R  L  E  T  R  K  A  T  L  Y  H  A  G  I  V  Y  N  S  V  V  I  A  A  C  T  Q  I  L  Y  Q  L  L  Y  F  T  S  I  G  D  K  *  I  L  P  N  N  K  N  W  R  L  E  S   </first_frame>
            <second_frame>  S  A  R  P  K  P  S  K  N  G  V  K  G  N  D  A  T  N  R  R  E  V  R  R  R  E  L  Q  S  P  T  I  C  P  H  H  F  P  S  G  A  S  R  *  R  G  *  S  A  D  G  D  I  T  V  V  G  F  T  *  K  *  E  *  Q  Q  Y  V  S  K  F  T  F  Q  L  G  V  H  G  A  Y  G  C  P  *  E  E   : G  F  S  S  Q  E  R  H  K  E  W  T  K  G  S  K  T  R  S  S  D  Y  S  L  Q  :  G  L  W  S  S  Q  V  A  T  F  L  L  L  Q  W  D  *  A  K  P  W  *  R  E  Q  F  H  R  L  I  K  S  K  G  L  F  S  S  F  S  N  P  F  L  C  S  R  I  S  G  *  K  L  G  R  L  R  Y  I  M  P  A  L  C  T  I  V  *  S  L  Q  H  V  L  K  F  Y  I  S  C  F  I  S  L  Q  L  V  T  S  K  S  C  Q  I  I  R  I  G  D  *  K  A  </second_frame>
            <third_frame>   Q  H  G  Q  N  P  A  K  M  A  L  R  G  T  M  L  R  T  A  G  K  F  A  G  V  N  S  S  L  R  R  F  A  H  I  T  S  R  P  A  P  L  D  S  V  V  D  R  P  T  A  T  S  P  S  L  V  L  P  E  N  E  N  N  S  N  M  F  P  N  S  P  F  N  W  G  S  M  E  L  M  A  V  P  K  K  K  :  V  S  P  H  K  R  G  I  R  N  G  P  K  A  L  K  P  V  P  V  I  I  R  C  K :   A  C  G  R  V  K  L  P  H  F  F  C  C  S  G  I  K  Q  N  P  G  E  E  N  N  S  T  G  *  S  N  R  R  D  Y  F  L  H  F  Q  I  P  F  F  V  V  E  S  P  V  R  N  *  E  G  Y  V  I  S  C  R  H  C  V  Q  *  C  S  H  C  S  M  Y  S  N  S  I  S  V  A  L  F  H  F  N  W  *  Q  V  N  L  A  K  *  *  E  L  E  T  R  K  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44501" stop="44241"/>
                    <exon start="42932" stop="42859"/>
                    <exon start="41379" stop="41292"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHGQNPAKMALRGTMLRTAGKFAGVNSSLRRFAHITSRPAPLDSVVDRPTATSPSLVLPENENNSNMFPNSPFNWGSMELMAVPKKKVSPHKRGIRNGPKALKPVPVIIRCKACGRVKLPHFFCCSGIKQNPGEENNSTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="60317" PGL_stop="62153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60317" e_stop="60642"/>
            <exon e_start="60738" e_stop="61018"/>
            <exon e_start="61525" e_stop="62153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60317" e_stop="60642" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60738" e_stop="61018" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="61525" e_stop="62153" e_length="629"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60317" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60319" stop="60642"/>
              <exon start="60738" stop="60876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="60972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="60931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60329" stop="60642"/>
              <exon start="60738" stop="60801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60334" stop="60642"/>
              <exon start="60738" stop="61018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60342" stop="60642"/>
              <exon start="60738" stop="60772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60344" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60355" stop="60642"/>
              <exon start="60738" stop="60764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60369" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60436" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60460" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60460" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="61559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60460" stop="60642"/>
              <exon start="60738" stop="60987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60906" stop="61018"/>
              <exon start="61525" stop="61844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60934" stop="61018"/>
              <exon start="61525" stop="62153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377126" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61724" stop="62143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG : AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG : TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAGGTTACCTTTC</gDNA_template>
            <first_frame> S  I  L  L  F  S  S  Y  I  E  S  N  S  P  T  S  T  P  L  Y  H  T  S  L  S  L  *  F  I  F  F  I  K  P  L  F  F  S  S  T  N  I  H  I  Y  *  L  F  F  L  K  K  N  G  W  *  K  *  F  Q  S  P  P  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  K  S  S  Y  L  Q  A  L  S  I  F  N  H  P  R  S  *  C  L  *  V  R  S  L  G  I  A  * :   K  N  *  I  W  R  K  R  M  V  F  L  H  P  T  *  *  K  I  S  K  W  C  *  A  K  *  G  S  C  V  W  L  L  E  S  H  R  H  R  *  R  Y  I  *  W  N  K  I  C  W  Y  *  K  S  S  C  I  L  *  R  K  T  P  *  R  Y  Q  D  *  L  D  H  A  *  I  *  I  E  *  I  K  D  S  T  N  *  A  K  W  I  H  E   : V  G  *  L  G  T  L  *  N  L  *  E  E  E  F  G  K  S  Y  R  D  D  E  S  *  R  R  H  T  R  T  S  N  N  E  C  Y  *  S  Y  S  *  S  C  G  F  *  W  T  T  N  I  E  T  T  K  D  L  F  T  I  S  F  I  R  N  G  L  F  W  I  N  F  T  T  I  *  *  Q  *  F  I  Q  Y  Y  *  P  K  *  Y  I  N  D  Q  C  *  W  I  C  Y  A  S  S  S  H  G  E  I  S  T  R  G  S  V  T  N  F  Y  E  S  I  L  S  I  S  V  R  R  R  Y  A  A  I  K  Y  F  D  N  N  N  Y  Y  A  S  I  *  N  K  L  I  T  S  I  S  S  I  I  V  T  Y  R  *  N  L  K  V  M  V  L  *  V  K  K  K  K  K  I  V  V  L  L  *  N  F  I  F  E  H  L  F  E  K  *  L  I  W  F  *  N  Y  N  I  N  I  L  Q  R  L  P  F </first_frame>
            <second_frame>  Q  Y  Y  Y  F  P  L  T  *  N  Q  I  P  L  H  Q  P  H  F  I  I  L  L  L  A  Y  N  L  F  F  L  *  N  L  C  S  S  P  P  Q  I  F  I  Y  I  N  F  F  F  *  K  K  M  V  G  K  N  N  S  N  H  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  N  Q  A  T  S  K  P  C  P  S  S  I  I  P  E  V  D  V  Y  K  F  D  P  W  E  L  P   : E  K  T  E  F  G  E  K  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  G  I  Y  S  G  T  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  I  K  T  D  W  I  M  H  E  Y  R  L  S  E  S  R  T  Q  P  T  R  P  N  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  E  R  A  I  E  M  M  K  V  E  E  D  T  Q  E  P  Q  I  M  S  V  T  N  P  I  H  E  V  V  A  S  N  G  Q  Q  T  L  K  L  P  R  T  C  S  L  S  H  L  L  E  M  D  Y  F  G  S  I  S  Q  L  F  D  D  N  N  S  Y  N  T  I  S  Q  N  N  T  L  M  T  N  V  N  G  Y  V  M  P  H  Q  A  M  E  K  F  Q  L  G  E  V  S  Q  I  S  M  N  P  S  Y  Q  F  Q  *  E  G  G  T  R  R  L  N  I  S  T  T  I  I  T  M  P  Q  F  K  T  S  *  L  L  V  S  H  Q  *  L  *  R  I  D  E  I  *  R  S  W  Y  Y  R  *  K  K  K  K  R  L  L  Y  Y  Y  R  I  L  F  S  S  T  C  L  K  N  N  *  F  G  S  E  I  I  I  L  I  F  Y  K  G  Y  L   </second_frame>
            <third_frame>   N  I  I  I  F  L  L  H  R  I  K  F  P  Y  I  N  P  T  L  S  Y  F  S  *  L  I  I  Y  F  F  Y  K  T  F  V  L  L  L  H  K  Y  S  Y  I  L  T  F  F  F  K  K  K  W  L  V  K  I  I  P  I  T  S  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  I  I  F  E  I  K  L  P  P  S  L  V  H  L  Q  S  S  P  K  L  M  S  I  S  S  I  P  G  N  C  L  :  K  K  L  N  L  E  K  K  N  G  I  S  S  P  H  V  I  E  N  I  Q  M  V  L  G  Q  I  G  Q  L  C  L  V  I  G  K  P  Q  A  Q  I  K  V  Y  I  V  E  Q  N  M  L  V  L  K  K  L  L  Y  F  I  K  E  N  P  L  K  V  S  R  L  I  G  S  C  M  N  I  D  *  V  N  Q  G  L  N  Q  L  G  Q  M  D  P  *  G :   W  M  I  G  Y  F  V  E  F  I  R  R  R  I  W  K  E  L  *  R  *  *  K  L  K  K  T  H  K  N  L  K  *  *  V  L  L  I  L  F  M  K  L  W  L  L  M  D  N  K  H  *  N  Y  Q  G  L  V  H  Y  L  I  Y  *  K  W  I  I  L  D  Q  F  H  N  Y  L  M  T  I  I  H  T  I  L  L  A  K  I  I  H  *  *  P  M  L  M  D  M  L  C  L  I  K  P  W  R  N  F  N  *  G  K  C  H  K  F  L  *  I  H  P  I  N  F  S  K  K  A  V  R  G  D  *  I  F  R  Q  Q  *  L  L  C  L  N  L  K  Q  V  D  Y  *  Y  L  I  N  N  C  N  V  *  M  K  F  K  G  H  G  T  I  G  K  K  K  K  K  D  C  C  I  T  I  E  F  Y  F  R  A  L  V  *  K  I  I  N  L  V  L  K  L  *  Y  *  Y  F  T  K  V  T  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60468" stop="60642"/>
                    <exon start="60738" stop="61018"/>
                    <exon start="61525" stop="61902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVGKNNSNHLPPGFRFHPTDEELIMYYLRNQATSKPCPSSIIPEVDVYKFDPWELPEKTEFGEKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKGIYSGTKYVGIKKALVFYKGKPPKGIKTDWIMHEYRLSESRTQPTRPNGSMRLDDWVLCRIYKKKNLERAIEMMKVEEDTQEPQIMSVTNPIHEVVASNGQQTLKLPRTCSLSHLLEMDYFGSISQLFDDNNSYNTISQNNTLMTNVNGYVMPHQAMEKFQLGEVSQISMNPSYQFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60319" e_stop="60642"/>
            <exon e_start="60738" e_stop="61407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60319" e_stop="60642" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="60738" e_stop="61407" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60319" stop="60642"/>
              <exon start="60738" stop="60876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="60972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="60931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60329" stop="60642"/>
              <exon start="60738" stop="60801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60334" stop="60642"/>
              <exon start="60738" stop="61018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60342" stop="60642"/>
              <exon start="60738" stop="60772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60355" stop="60642"/>
              <exon start="60738" stop="60764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60460" stop="60642"/>
              <exon start="60738" stop="60987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60884" stop="61407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG : AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAA</gDNA_template>
            <first_frame> N  I  I  I  F  L  L  H  R  I  K  F  P  Y  I  N  P  T  L  S  Y  F  S  *  L  I  I  Y  F  F  Y  K  T  F  V  L  L  L  H  K  Y  S  Y  I  L  T  F  F  F  K  K  K  W  L  V  K  I  I  P  I  T  S  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  I  I  F  E  I  K  L  P  P  S  L  V  H  L  Q  S  S  P  K  L  M  S  I  S  S  I  P  G  N  C  L  :  K  K  L  N  L  E  K  K  N  G  I  S  S  P  H  V  I  E  N  I  Q  M  V  L  G  Q  I  G  Q  L  C  L  V  I  G  K  P  Q  A  Q  I  K  V  Y  I  V  E  Q  N  M  L  V  L  K  K  L  L  Y  F  I  K  E  N  P  L  K  V  S  R  L  I  G  S  C  M  N  I  D  *  V  N  Q  G  L  N  Q  L  G  Q  M  D  P  *  G  *  A  F  G  N  T  I  F  F  L  D  I  L  I  E  Y  S  L  R  K  L  V  D  I  L  K  *  F  N  V  N  V  Y  V  F  F  S  F  S  E  L  I  N  G  N  *  V  E  K  Y  F  F  Y  S  S  L  I  R  D  G  K  N  N  Y  F  R  *  *  V  S  N  F  V  *  L  *  N  L  F  I  A  F  F  F  H  R  V  *  F  K  F  C  I  L  I  K  *  S  F  K  K  *  L  C  V  M  I  D  I  Y  Y  I  E  K  Y  G  M  *  L  S  I  A  S  *  V  V  L  I  I  </first_frame>
            <second_frame>  I  L  L  F  S  S  Y  I  E  S  N  S  P  T  S  T  P  L  Y  H  T  S  L  S  L  *  F  I  F  F  I  K  P  L  F  F  S  S  T  N  I  H  I  Y  *  L  F  F  L  K  K  N  G  W  *  K  *  F  Q  S  P  P  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  K  S  S  Y  L  Q  A  L  S  I  F  N  H  P  R  S  *  C  L  *  V  R  S  L  G  I  A  * :   K  N  *  I  W  R  K  R  M  V  F  L  H  P  T  *  *  K  I  S  K  W  C  *  A  K  *  G  S  C  V  W  L  L  E  S  H  R  H  R  *  R  Y  I  *  W  N  K  I  C  W  Y  *  K  S  S  C  I  L  *  R  K  T  P  *  R  Y  Q  D  *  L  D  H  A  *  I  *  I  E  *  I  K  D  S  T  N  *  A  K  W  I  H  E  G  K  P  L  E  T  L  F  F  S  *  I  F  *  L  N  I  H  *  E  N  *  W  I  F  *  S  S  S  M  *  M  Y  T  F  F  F  L  S  V  S  *  L  M  G  I  E  *  K  N  I  F  F  I  A  H  *  F  V  M  G  K  I  I  I  S  D  N  E  S  L  I  L  F  S  Y  K  I  C  L  S  L  F  F  F  I  E  Y  S  L  S  F  V  Y  *  S  N  N  H  L  K  N  N  Y  V  *  *  L  I  Y  T  I  L  K  N  M  A  C  N  F  L  *  Q  V  K  L  Y  L  *  * </second_frame>
            <third_frame>   Y  Y  Y  F  P  L  T  *  N  Q  I  P  L  H  Q  P  H  F  I  I  L  L  L  A  Y  N  L  F  F  L  *  N  L  C  S  S  P  P  Q  I  F  I  Y  I  N  F  F  F  *  K  K  M  V  G  K  N  N  S  N  H  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  N  Q  A  T  S  K  P  C  P  S  S  I  I  P  E  V  D  V  Y  K  F  D  P  W  E  L  P   : E  K  T  E  F  G  E  K  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  G  I  Y  S  G  T  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  I  K  T  D  W  I  M  H  E  Y  R  L  S  E  S  R  T  Q  P  T  R  P  N  G  S  M  R  V  S  L  W  K  H  Y  F  F  P  R  Y  F  D  *  I  F  T  K  K  I  S  G  Y  F  K  V  V  Q  C  K  C  I  R  F  F  F  F  Q  *  A  D  *  W  E  L  S  R  K  I  F  F  L  *  L  I  D  S  *  W  E  K  *  L  F  P  I  M  S  L  *  F  C  L  A  I  K  F  V  Y  R  F  F  F  S  *  S  I  V  *  V  L  Y  I  N  Q  I  I  I  *  K  I  I  M  C  N  D  *  Y  I  L  Y  *  K  I  W  H  V  T  F  Y  S  K  L  S  C  T  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60468" stop="60642"/>
                    <exon start="60738" stop="61063"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVGKNNSNHLPPGFRFHPTDEELIMYYLRNQATSKPCPSSIIPEVDVYKFDPWELPEKTEFGEKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKGIYSGTKYVGIKKALVFYKGKPPKGIKTDWIMHEYRLSESRTQPTRPNGSMRVSLWKHYFFPRYFD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60323" e_stop="60642"/>
            <exon e_start="60738" e_stop="60863"/>
            <exon e_start="60970" e_stop="61018"/>
            <exon e_start="61525" e_stop="61626"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60323" e_stop="60642" e_length="320"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60738" e_stop="60863" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60970" e_stop="61018" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61525" e_stop="61626" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60323" stop="60642"/>
              <exon start="60738" stop="60863"/>
              <exon start="60970" stop="60990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60325" stop="60642"/>
              <exon start="60738" stop="60863"/>
              <exon start="60970" stop="61018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="60863"/>
              <exon start="60970" stop="61018"/>
              <exon start="61525" stop="61626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60326" stop="60642"/>
              <exon start="60738" stop="60863"/>
              <exon start="60970" stop="61018"/>
              <exon start="61525" stop="61577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60329" stop="60642"/>
              <exon start="60738" stop="60863"/>
              <exon start="60970" stop="61018"/>
              <exon start="61525" stop="61541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60329" stop="60642"/>
              <exon start="60738" stop="60801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60342" stop="60642"/>
              <exon start="60738" stop="60772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60355" stop="60642"/>
              <exon start="60738" stop="60764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG : AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG : ATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG : TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATG</gDNA_template>
            <first_frame> L  L  F  S  S  Y  I  E  S  N  S  P  T  S  T  P  L  Y  H  T  S  L  S  L  *  F  I  F  F  I  K  P  L  F  F  S  S  T  N  I  H  I  Y  *  L  F  F  L  K  K  N  G  W  *  K  *  F  Q  S  P  P  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  K  S  S  Y  L  Q  A  L  S  I  F  N  H  P  R  S  *  C  L  *  V  R  S  L  G  I  A  * :   K  N  *  I  W  R  K  R  M  V  F  L  H  P  T  *  *  K  I  S  K  W  C  *  A  K  *  G  S  C  V  W  L  L  E  S  H  R  H  R  *  R :   L  S  E  S  R  T  Q  P  T  R  P  N  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  E  R  A  I  E  M  M  K  V  E  E  D  T  Q  E  P  Q  I  M </first_frame>
            <second_frame>  Y  Y  F  P  L  T  *  N  Q  I  P  L  H  Q  P  H  F  I  I  L  L  L  A  Y  N  L  F  F  L  *  N  L  C  S  S  P  P  Q  I  F  I  Y  I  N  F  F  F  *  K  K  M  V  G  K  N  N  S  N  H  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  N  Q  A  T  S  K  P  C  P  S  S  I  I  P  E  V  D  V  Y  K  F  D  P  W  E  L  P   : E  K  T  E  F  G  E  K  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K   : D  *  V  N  Q  G  L  N  Q  L  G  Q  M  D  P  *  G :   W  M  I  G  Y  F  V  E  F  I  R  R  R  I  W  K  E  L  *  R  *  *  K  L  K  K  T  H  K  N  L  K  *   </second_frame>
            <third_frame>   I  I  F  L  L  H  R  I  K  F  P  Y  I  N  P  T  L  S  Y  F  S  *  L  I  I  Y  F  F  Y  K  T  F  V  L  L  L  H  K  Y  S  Y  I  L  T  F  F  F  K  K  K  W  L  V  K  I  I  P  I  T  S  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  I  I  F  E  I  K  L  P  P  S  L  V  H  L  Q  S  S  P  K  L  M  S  I  S  S  I  P  G  N  C  L  :  K  K  L  N  L  E  K  K  N  G  I  S  S  P  H  V  I  E  N  I  Q  M  V  L  G  Q  I  G  Q  L  C  L  V  I  G  K  P  Q  A  Q  I  K  :  I  E  *  I  K  D  S  T  N  *  A  K  W  I  H  E   : V  G  *  L  G  T  L  *  N  L  *  E  E  E  F  G  K  S  Y  R  D  D  E  S  *  R  R  H  T  R  T  S  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60468" stop="60642"/>
                    <exon start="60738" stop="60863"/>
                    <exon start="60970" stop="60974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVGKNNSNHLPPGFRFHPTDEELIMYYLRNQATSKPCPSSIIPEVDVYKFDPWELPEKTEFGEKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60544" stop="60642"/>
                    <exon start="60738" stop="60863"/>
                    <exon start="60970" stop="60978"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCIIFEIKLPPSLVHLQSSPKLMSISSIPGNCLKKLNLEKKNGISSPHVIENIQMVLGQIGQLCLVIGKPQAQIKIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="64881" PGL_stop="63421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64881" e_stop="64629"/>
            <exon e_start="64454" e_stop="64331"/>
            <exon e_start="63949" e_stop="63593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.870" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64881" e_stop="64629" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.870" acc_prob="0.970">
            <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64454" e_stop="64331" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.836" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="63949" e_stop="63593" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64881" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64878" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64877" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64665" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301861" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63908" stop="63593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309684" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA : GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG : ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAAATTGGAG</gDNA_template>
            <first_frame> N  L  N  R  Y  L  S  H  R  K  N  E  *  *  R  R  Y  Q  L  N  L  E  K  H  Q  R  L  K  V  M  E  L  T  E  D  S  L  Y  L  I  L  F  F  V  L  L  R  L  L  V  P  *  L  E  L  *  Q  W  E  L  L  N  K  L  F  L  L  P  H  N  L  C  N  F  Q  L  N  M  M  I  L  T  H  L   : S  C  S  *  L  *  M  Q  *  Y  V  H  I  L  L  L  L  Y  H  F  P  S  F  I  L  *  G  A  E  Q  E  K  V  G  S  C  S  S  S  L  T  R :   *  C  W  F  F  S  H  L  E  P  L  Q  Q  L  P  L  C  I  *  H  I  L  G  T  L  L  L  T  G  F  Q  F  V  N  S  I  P  I  S  A  N  D  L  L  A  L  S  S  A  H  L  A  R  W  C  V  L  F  S  S  S  F  S  Q  L  S  R  Y  P  G  D  K  S  M  L  F  T  L  A  C  V  S  V  V  F  D  I  *  L  K  F  H  A  L  D  F  V  C  N  L  S  C  Y  L  Y  Q  *  Y  I  L  C  L  F  S  F  S  N  W   </first_frame>
            <second_frame>  I  L  I  D  T  *  A  I  E  K  T  N  D  E  G  G  I  S  *  I  W  R  S  I  K  G  *  R  S  W  S  *  Q  R  T  L  C  I  *  S  C  S  S  Y  C  C  D  C  W  Y  L  S  W  S  C  S  N  G  N  C  *  T  N  S  S  F  C  H  T  T  C  A  I  F  S  S  I  *  *  F  *  L  I  *  :  V  V  R  D  C  E  C  N  S  M  C  I  S  C  S  Y  S  T  I  F  H  L  S  Y  Y  E  E  Q  S  R  K  K  S  D  L  A  H  L  P  *  R   : D  N  A  G  S  S  H  I  W  S  L  C  S  S  C  H  C  V  F  S  T  Y  W  E  H  F  C  *  L  V  F  S  L  S  T  V  Y  R  F  L  P  T  I  C  W  L  S  H  R  L  I  W  R  D  G  V  S  C  S  P  H  H  F  L  S  C  R  D  I  Q  A  I  N  Q  C  C  L  H  W  L  V  Y  L  L  C  L  I  F  D  *  S  F  M  L  W  I  L  Y  A  I  Y  P  V  T  Y  I  N  N  I  Y  C  A  C  L  V  F  Q  I  G  </second_frame>
            <third_frame>   S  *  *  I  L  E  P  S  K  K  R  M  M  K  A  V  S  V  E  S  G  E  A  S  K  A  K  G  H  G  V  N  R  G  L  S  V  F  D  L  V  L  R  I  V  A  I  V  G  T  L  A  G  A  V  A  M  G  T  A  E  Q  T  L  P  F  A  T  Q  L  V  Q  F  S  A  Q  Y  D  D  F  D  S  F  K :   L  F  V  I  V  N  A  I  V  C  A  Y  L  A  L  T  L  P  F  S  I  F  H  I  M  R  S  R  A  G  K  S  R  I  L  L  I  F  L  D  A  :  I  M  L  V  L  L  T  S  G  A  S  A  A  A  A  I  V  Y  L  A  H  T  G  N  T  S  A  N  W  F  S  V  C  Q  Q  Y  T  D  F  C  Q  R  S  A  G  S  L  I  G  S  F  G  A  M  V  C  L  V  L  L  I  I  F  S  A  V  A  I  S  R  R  *  I  N  A  V  Y  I  G  L  C  I  C  C  V  *  Y  L  T  K  V  S  C  F  G  F  C  M  Q  F  I  L  L  L  I  S  I  I  Y  I  V  P  V  *  F  F  K  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64870" stop="64629"/>
                    <exon start="64454" stop="64331"/>
                    <exon start="63949" stop="63734"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEPSKKRMMKAVSVESGEASKAKGHGVNRGLSVFDLVLRIVAIVGTLAGAVAMGTAEQTLPFATQLVQFSAQYDDFDSFKLFVIVNAIVCAYLALTLPFSIFHIMRSRAGKSRILLIFLDAIMLVLLTSGASAAAAIVYLAHTGNTSANWFSVCQQYTDFCQRSAGSLIGSFGAMVCLVLLIIFSAVAISRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64881" e_stop="64629"/>
            <exon e_start="64454" e_stop="64331"/>
            <exon e_start="63949" e_stop="63600"/>
            <exon e_start="63429" e_stop="63421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.870" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64881" e_stop="64629" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.870" acc_prob="0.970">
            <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64454" e_stop="64331" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.836" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63949" e_stop="63600" e_length="350"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="63599" i_stop="63430" i_length="170"/>
          </intron>
          <exon e_serial="4" e_score="0.778">
            <gDNA_exon_boundary e_start="63429" e_stop="63421" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64881" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64878" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63600"/>
              <exon start="63429" stop="63421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64877" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64665" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301861" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA : GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG : ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAA : AAGAAATAA</gDNA_template>
            <first_frame> N  L  N  R  Y  L  S  H  R  K  N  E  *  *  R  R  Y  Q  L  N  L  E  K  H  Q  R  L  K  V  M  E  L  T  E  D  S  L  Y  L  I  L  F  F  V  L  L  R  L  L  V  P  *  L  E  L  *  Q  W  E  L  L  N  K  L  F  L  L  P  H  N  L  C  N  F  Q  L  N  M  M  I  L  T  H  L   : S  C  S  *  L  *  M  Q  *  Y  V  H  I  L  L  L  L  Y  H  F  P  S  F  I  L  *  G  A  E  Q  E  K  V  G  S  C  S  S  S  L  T  R :   *  C  W  F  F  S  H  L  E  P  L  Q  Q  L  P  L  C  I  *  H  I  L  G  T  L  L  L  T  G  F  Q  F  V  N  S  I  P  I  S  A  N  D  L  L  A  L  S  S  A  H  L  A  R  W  C  V  L  F  S  S  S  F  S  Q  L  S  R  Y  P  G  D  K  S  M  L  F  T  L  A  C  V  S  V  V  F  D  I  *  L  K  F  H  A  L  D  F  V  C  N  L  S  C  Y  L  Y  Q  *  Y  I  L  C  L  F  S  F  S   : K  E  I  </first_frame>
            <second_frame>  I  L  I  D  T  *  A  I  E  K  T  N  D  E  G  G  I  S  *  I  W  R  S  I  K  G  *  R  S  W  S  *  Q  R  T  L  C  I  *  S  C  S  S  Y  C  C  D  C  W  Y  L  S  W  S  C  S  N  G  N  C  *  T  N  S  S  F  C  H  T  T  C  A  I  F  S  S  I  *  *  F  *  L  I  *  :  V  V  R  D  C  E  C  N  S  M  C  I  S  C  S  Y  S  T  I  F  H  L  S  Y  Y  E  E  Q  S  R  K  K  S  D  L  A  H  L  P  *  R   : D  N  A  G  S  S  H  I  W  S  L  C  S  S  C  H  C  V  F  S  T  Y  W  E  H  F  C  *  L  V  F  S  L  S  T  V  Y  R  F  L  P  T  I  C  W  L  S  H  R  L  I  W  R  D  G  V  S  C  S  P  H  H  F  L  S  C  R  D  I  Q  A  I  N  Q  C  C  L  H  W  L  V  Y  L  L  C  L  I  F  D  *  S  F  M  L  W  I  L  Y  A  I  Y  P  V  T  Y  I  N  N  I  Y  C  A  C  L  V  F  Q  :  K  K  * </second_frame>
            <third_frame>   S  *  *  I  L  E  P  S  K  K  R  M  M  K  A  V  S  V  E  S  G  E  A  S  K  A  K  G  H  G  V  N  R  G  L  S  V  F  D  L  V  L  R  I  V  A  I  V  G  T  L  A  G  A  V  A  M  G  T  A  E  Q  T  L  P  F  A  T  Q  L  V  Q  F  S  A  Q  Y  D  D  F  D  S  F  K :   L  F  V  I  V  N  A  I  V  C  A  Y  L  A  L  T  L  P  F  S  I  F  H  I  M  R  S  R  A  G  K  S  R  I  L  L  I  F  L  D  A  :  I  M  L  V  L  L  T  S  G  A  S  A  A  A  A  I  V  Y  L  A  H  T  G  N  T  S  A  N  W  F  S  V  C  Q  Q  Y  T  D  F  C  Q  R  S  A  G  S  L  I  G  S  F  G  A  M  V  C  L  V  L  L  I  I  F  S  A  V  A  I  S  R  R  *  I  N  A  V  Y  I  G  L  C  I  C  C  V  *  Y  L  T  K  V  S  C  F  G  F  C  M  Q  F  I  L  L  L  I  S  I  I  Y  I  V  P  V  *  F  F  K :   R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64870" stop="64629"/>
                    <exon start="64454" stop="64331"/>
                    <exon start="63949" stop="63734"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEPSKKRMMKAVSVESGEASKAKGHGVNRGLSVFDLVLRIVAIVGTLAGAVAMGTAEQTLPFATQLVQFSAQYDDFDSFKLFVIVNAIVCAYLALTLPFSIFHIMRSRAGKSRILLIFLDAIMLVLLTSGASAAAAIVYLAHTGNTSANWFSVCQQYTDFCQRSAGSLIGSFGAMVCLVLLIIFSAVAISRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="66974" PGL_stop="66420"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66974" e_stop="66420"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66974" e_stop="66420" e_length="555"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66974" stop="66477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66973" stop="66475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66968" stop="66474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66881" stop="66420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGATATACTGATTGTTGTTGGTCCCAATTTCTGAAATGCATCTTAGAAGTTAGAACCTT</gDNA_template>
            <first_frame> S  W  D  V  P  R  Y  L  H  *  I  S  T  L  *  R  R  V  L  S  I  S  K  L  Q  W  L  G  L  W  K  I  W  S  L  S  Q  L  S  S  L  M  V  W  S  P  Q  *  N  Q  D  I  K  R  *  L  R  R  P  *  N  V  P  L  H  G  F  L  I  V  L  M  R  N  L  I  S  G  *  V  T  T  L  L  T  W  K  K  W  K  *  V  N  H  P  S  I  *  I  L  Y  W  S  P  E  M  M  N  Q  L  L  I  T  T  M  I  T  V  K  T  T  M  Y  R  L  L  K  W  M  F  C  S  L  P  Q  S  M  *  M  L  T  I  S  N  F  L  S  F  E  W  P  *  R  W  P  M  G  F  I  K  L  N  I  G  R  G  I  Y  *  L  L  L  V  P  I  S  E  M  H  L  R  S  *  N  L </first_frame>
            <second_frame>  R  G  M  S  P  G  T  C  T  K  S  R  H  Y  E  E  E  F  *  V  F  Q  N  Y  N  G  *  A  F  G  R  F  G  R  F  P  S  F  L  H  L  W  S  G  V  H  N  K  T  K  T  *  K  D  S  *  E  G  L  K  M  F  P  C  M  A  S  *  L  F  *  *  E  I  *  S  A  D  E  L  R  H  Y  *  H  G  R  N  G  S  R  *  I  I  L  R  Y  E  Y  S  I  G  A  Q  K  *  *  I  S  F  *  L  R  R  *  L  Q  *  R  R  Q  C  I  D  Y  S  S  G  C  S  V  H  S  P  R  V  C  K  C  *  L  F  Q  I  F  *  V  L  N  G  H  E  G  G  Q  W  G  L  S  N  *  I  *  E  G  G  Y  T  D  C  C  W  S  Q  F  L  K  C  I  L  E  V  R  T   </second_frame>
            <third_frame>   V  G  C  P  Q  V  L  A  L  N  L  D  I  M  K  K  S  F  E  Y  F  K  T  T  M  A  R  P  L  E  D  L  V  A  F  P  A  F  F  T  Y  G  L  E  S  T  I  K  P  R  H  K  K  I  A  E  K  A  L  K  C  S  L  A  W  L  L  N  C  S  D  E  K  F  D  Q  R  M  S  Y  D  I  I  D  M  E  E  M  E  V  G  E  S  S  F  D  M  N  T  L  L  E  P  R  N  D  E  S  A  S  D  Y  D  D  D  Y  S  E  D  D  N  V  *  T  T  Q  V  D  V  L  F  T  P  P  E  Y  V  N  A  N  Y  F  K  F  S  E  F  *  M  A  M  K  V  A  N  G  V  Y  Q  T  E  Y  R  K  G  D  I  L  I  V  V  G  P  N  F  *  N  A  S  *  K  L  E  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66972" stop="66604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGCPQVLALNLDIMKKSFEYFKTTMARPLEDLVAFPAFFTYGLESTIKPRHKKIAEKALKCSLAWLLNCSDEKFDQRMSYDIIDMEEMEVGESSFDMNTLLEPRNDESASDYDDDYSEDDNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="66519" PGL_stop="67074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66519" e_stop="67074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="66519" e_stop="67074" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66519" stop="67074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420302" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATGGCCATTCAAAACTCAGAAAATTTGAAATAGTTAGCATTTACATACTCTGGGGGAGTGAACAGAACATCCACTTGAGTAGTCTATACATTGTCGTCTTCACTGTAATCATCGTCGTAATCAGAAGCTGATTCATCATTTCTGGGCTCCAATAGAGTATTCATATCGAAGGATGATTCACCTACTTCCATTTCTTCCATGTCAATAATGTCGTAACTCATCCGCTGATCAAATTTCTCATCAGAACAATTAAGAAGCCATGCAAGGGAACATTTTAAGGCCTTCTCAGCTATCTTTTTATGTCTTGGTTTTATTGTGGACTCCAGACCATAAGTGAAGAAAGCTGGGAAAGCGACCAAATCTTCCAAAGGCCTAGCCATTGTAGTTTTGAAATACTCAAAACTCTTCTTCATAATGTCGAGATTTAGTGCAAGTACCTGGGGACATCCCACGACCATTTCTCTCACTTGTTCCGAGGAAAAACCACATTCCTTGAGGAAATCAACATGCTTCACAACAGGTGCTTTACTGAGGCTGATAATCTGTGGCATCTT</gDNA_template>
            <first_frame> S  W  P  F  K  T  Q  K  I  *  N  S  *  H  L  H  T  L  G  E  *  T  E  H  P  L  E  *  S  I  H  C  R  L  H  C  N  H  R  R  N  Q  K  L  I  H  H  F  W  A  P  I  E  Y  S  Y  R  R  M  I  H  L  L  P  F  L  P  C  Q  *  C  R  N  S  S  A  D  Q  I  S  H  Q  N  N  *  E  A  M  Q  G  N  I  L  R  P  S  Q  L  S  F  Y  V  L  V  L  L  W  T  P  D  H  K  *  R  K  L  G  K  R  P  N  L  P  K  A  *  P  L  *  F  *  N  T  Q  N  S  S  S  *  C  R  D  L  V  Q  V  P  G  D  I  P  R  P  F  L  S  L  V  P  R  K  N  H  I  P  *  G  N  Q  H  A  S  Q  Q  V  L  Y  *  G  *  *  S  V  A  S  </first_frame>
            <second_frame>  H  G  H  S  K  L  R  K  F  E  I  V  S  I  Y  I  L  W  G  S  E  Q  N  I  H  L  S  S  L  Y  I  V  V  F  T  V  I  I  V  V  I  R  S  *  F  I  I  S  G  L  Q  *  S  I  H  I  E  G  *  F  T  Y  F  H  F  F  H  V  N  N  V  V  T  H  P  L  I  K  F  L  I  R  T  I  K  K  P  C  K  G  T  F  *  G  L  L  S  Y  L  F  M  S  W  F  Y  C  G  L  Q  T  I  S  E  E  S  W  E  S  D  Q  I  F  Q  R  P  S  H  C  S  F  E  I  L  K  T  L  L  H  N  V  E  I  *  C  K  Y  L  G  T  S  H  D  H  F  S  H  L  F  R  G  K  T  T  F  L  E  E  I  N  M  L  H  N  R  C  F  T  E  A  D  N  L  W  H  L </second_frame>
            <third_frame>   M  A  I  Q  N  S  E  N  L  K  *  L  A  F  T  Y  S  G  G  V  N  R  T  S  T  *  V  V  Y  T  L  S  S  S  L  *  S  S  S  *  S  E  A  D  S  S  F  L  G  S  N  R  V  F  I  S  K  D  D  S  P  T  S  I  S  S  M  S  I  M  S  *  L  I  R  *  S  N  F  S  S  E  Q  L  R  S  H  A  R  E  H  F  K  A  F  S  A  I  F  L  C  L  G  F  I  V  D  S  R  P  *  V  K  K  A  G  K  A  T  K  S  S  K  G  L  A  I  V  V  L  K  Y  S  K  L  F  F  I  M  S  R  F  S  A  S  T  W  G  H  P  T  T  I  S  L  T  C  S  E  E  K  P  H  S  L  R  K  S  T  C  F  T  T  G  A  L  L  R  L  I  I  C  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66854" stop="67072"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKKAGKATKSSKGLAIVVLKYSKLFFIMSRFSASTWGHPTTISLTCSEEKPHSLRKSTCFTTGALLRLIICGI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="68183" PGL_stop="67455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68183" e_stop="67455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="68183" e_stop="67455" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68183" stop="67455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68183" stop="67478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTCATCTTCAGAATATGAAGGTCATTAGTTATAACCGCATCATTAATCCCAGTTTTTTGCTCATAAATCATGAATTGCCTTCCAACATGTTCCATCGACCCCGGTTAATATCCACTTCAGCTCCAAGTATTTCAAGTTTCAATATGAGGAAAAATGACTTGATGATGAGATTACCGTGCTGCTTTGCTACGAGAGCTGCTCTTTCATCTTCAGTGAAGACAGACACTTCCAGTGGAAGTAAGAAACAAAAGAGCTCATCTTTCTACACTCATCCTAGTTTATTAGAGATGAAGAATGAGAAGGCAGCCAACCGTGTACGTGTTTATGAATTCTTGAGAAGCATTGGCATTGTACCTGATGAGCTCGATGGATTAGAGCTTCCTGTGACTGTGGAGGTCATGAGAGAACGCGTGGACTTTCTTCACAAATTGGGACTCACTATTGAAGATATTAACAACTATCCTCTTGTTCTGGGATGCAGTGTGAAGAAAAACATGATTCCTGTGCTTGATTATCTGGGCAAATTGGGTGTTAGAAAATCCACCTTGACAGACTTTTTGCGGCGGTACCCACAAGTTCTACATGCAAGTGTGGTGGTAGACCTTGCTCCAGTTGTGAAATATCTTCAAGGCATGGATATTAAACCAAATGATATTCCACGAGTACTGGAGAAATATCCTGAAGTGTTGGGGTTCAAGCTTGAGGGCACAATGAGTACATCAGTTG</gDNA_template>
            <first_frame> V  F  I  F  R  I  *  R  S  L  V  I  T  A  S  L  I  P  V  F  C  S  *  I  M  N  C  L  P  T  C  S  I  D  P  G  *  Y  P  L  Q  L  Q  V  F  Q  V  S  I  *  G  K  M  T  *  *  *  D  Y  R  A  A  L  L  R  E  L  L  F  H  L  Q  *  R  Q  T  L  P  V  E  V  R  N  K  R  A  H  L  S  T  L  I  L  V  Y  *  R  *  R  M  R  R  Q  P  T  V  Y  V  F  M  N  S  *  E  A  L  A  L  Y  L  M  S  S  M  D  *  S  F  L  *  L  W  R  S  *  E  N  A  W  T  F  F  T  N  W  D  S  L  L  K  I  L  T  T  I  L  L  F  W  D  A  V  *  R  K  T  *  F  L  C  L  I  I  W  A  N  W  V  L  E  N  P  P  *  Q  T  F  C  G  G  T  H  K  F  Y  M  Q  V  W  W  *  T  L  L  Q  L  *  N  I  F  K  A  W  I  L  N  Q  M  I  F  H  E  Y  W  R  N  I  L  K  C  W  G  S  S  L  R  A  Q  *  V  H  Q  L </first_frame>
            <second_frame>  F  S  S  S  E  Y  E  G  H  *  L  *  P  H  H  *  S  Q  F  F  A  H  K  S  *  I  A  F  Q  H  V  P  S  T  P  V  N  I  H  F  S  S  K  Y  F  K  F  Q  Y  E  E  K  *  L  D  D  E  I  T  V  L  L  C  Y  E  S  C  S  F  I  F  S  E  D  R  H  F  Q  W  K  *  E  T  K  E  L  I  F  L  H  S  S  *  F  I  R  D  E  E  *  E  G  S  Q  P  C  T  C  L  *  I  L  E  K  H  W  H  C  T  *  *  A  R  W  I  R  A  S  C  D  C  G  G  H  E  R  T  R  G  L  S  S  Q  I  G  T  H  Y  *  R  Y  *  Q  L  S  S  C  S  G  M  Q  C  E  E  K  H  D  S  C  A  *  L  S  G  Q  I  G  C  *  K  I  H  L  D  R  L  F  A  A  V  P  T  S  S  T  C  K  C  G  G  R  P  C  S  S  C  E  I  S  S  R  H  G  Y  *  T  K  *  Y  S  T  S  T  G  E  I  S  *  S  V  G  V  Q  A  *  G  H  N  E  Y  I  S   </second_frame>
            <third_frame>   F  H  L  Q  N  M  K  V  I  S  Y  N  R  I  I  N  P  S  F  L  L  I  N  H  E  L  P  S  N  M  F  H  R  P  R  L  I  S  T  S  A  P  S  I  S  S  F  N  M  R  K  N  D  L  M  M  R  L  P  C  C  F  A  T  R  A  A  L  S  S  S  V  K  T  D  T  S  S  G  S  K  K  Q  K  S  S  S  F  Y  T  H  P  S  L  L  E  M  K  N  E  K  A  A  N  R  V  R  V  Y  E  F  L  R  S  I  G  I  V  P  D  E  L  D  G  L  E  L  P  V  T  V  E  V  M  R  E  R  V  D  F  L  H  K  L  G  L  T  I  E  D  I  N  N  Y  P  L  V  L  G  C  S  V  K  K  N  M  I  P  V  L  D  Y  L  G  K  L  G  V  R  K  S  T  L  T  D  F  L  R  R  Y  P  Q  V  L  H  A  S  V  V  V  D  L  A  P  V  V  K  Y  L  Q  G  M  D  I  K  P  N  D  I  P  R  V  L  E  K  Y  P  E  V  L  G  F  K  L  E  G  T  M  S  T  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68181" stop="67456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLQNMKVISYNRIINPSFLLINHELPSNMFHRPRLISTSAPSISSFNMRKNDLMMRLPCCFATRAALSSSVKTDTSSGSKKQKSSSFYTHPSLLEMKNEKAANRVRVYEFLRSIGIVPDELDGLELPVTVEVMRERVDFLHKLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTLTDFLRRYPQVLHASVVVDLAPVVKYLQGMDIKPNDIPRVLEKYPEVLGFKLEGTMSTSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="77465" PGL_stop="74564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77463" e_stop="77053"/>
            <exon e_start="76021" e_stop="74682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.711" e_score="0.922"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="77463" e_stop="77053" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.711">
            <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="76021" e_stop="74682" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77053"/>
              <exon start="76021" stop="75862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77053"/>
              <exon start="76021" stop="75887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77086" stop="77053"/>
              <exon start="76021" stop="75558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75980" stop="75286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75949" stop="75630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75874" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75692" stop="75173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="74944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="75124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75570" stop="75160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75539" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75507" stop="74735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75476" stop="74980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75458" stop="74794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75269" stop="74690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75158" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA : GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</gDNA_template>
            <first_frame> C  F  I  N  N  H  F  C  *  K  G  K  L  H  Y  R  C  *  R  I  V  V  R  L  Y  W  V  R  Y  L  C  P  K  F  K  *  *  V  Y  C  W  M  Y  F  F  Y  Q  I  L  V  Y  Q  *  L  R  *  H  L  G  L  M  I  F  *  V  A  N  L  Y  S  Y  F  M  Y  T  C  T  K  I  L  L  N  L  D  V  I  S  V  L  A  C  I  N  W  V  N  L  *  L  N  V  Y  F  G  V  V  P  N  P  G  M  P  T  I  G  M  A  S  R  F  V  S  C  C  A  V  *  S  L  W  Q  D  L  C  S  A  I  :  E  V  C  V  S  G  R  T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  I  I   </first_frame>
            <second_frame>  V  S  *  T  T  I  F  V  E  K  E  N  S  I  I  G  V  E  G  L  L  S  V  Y  T  G  *  D  I  S  A  Q  N  S  S  D  E  Y  I  V  G  C  I  F  F  T  K  F  W  Y  T  N  N  *  D  N  I  *  V  *  *  S  F  E  *  L  I  C  I  V  I  S  C  T  L  A  Q  K  Y  Y  *  T  L  M  L  S  Q  C  W  H  A  *  I  G  *  I  Y  D  *  M  C  I  L  V  L  Y  Q  I  Q  A  C  Q  L  L  G  W  H  L  G  L  L  V  A  V  Q  Y  D  H  C  G  R  I  C  V  L  Q  * :   K  F  V  F  L  A  E  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  L  *  L  </second_frame>
            <third_frame>   F  H  K  Q  P  F  L  L  K  R  K  T  P  L  S  V  L  K  D  C  C  P  S  I  L  G  K  I  S  L  P  K  I  Q  V  M  S  I  L  L  D  V  F  F  L  P  N  S  G  I  P  I  I  E  I  T  S  R  F  N  D  L  L  S  S  *  F  V  *  L  F  H  V  H  L  H  K  N  I  I  E  P  *  C  Y  L  S  V  G  M  H  K  L  G  K  F  M  I  E  C  V  F  W  C  C  T  K  S  R  H  A  N  Y  W  D  G  I  S  V  C  *  L  L  C  S  M  I  T  V  A  G  S  V  F  C  N   : R  S  L  C  F  W  Q  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T  Y  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77461" stop="77264"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHKQPFLLKRKTPLSVLKDCCPSILGKISLPKIQVMSILLDVFFLPNSGIPIIEITSRFNDLLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77463" e_stop="77053"/>
            <exon e_start="76021" e_stop="74690"/>
            <exon e_start="74582" e_stop="74564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.711" e_score="0.922"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.988"/>
          <exon-only e_score="0.737"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="77463" e_stop="77053" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.711">
            <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="76021" e_stop="74690" e_length="1332"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74689" i_stop="74583" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.737">
            <gDNA_exon_boundary e_start="74582" e_stop="74564" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77053"/>
              <exon start="76021" stop="75862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77053"/>
              <exon start="76021" stop="75887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77086" stop="77053"/>
              <exon start="76021" stop="75558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75980" stop="75286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75949" stop="75630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75874" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75692" stop="75173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="74944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="75124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75570" stop="75160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75539" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75507" stop="74735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75476" stop="74980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75458" stop="74794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75452" stop="74690"/>
              <exon start="74582" stop="74564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75269" stop="74690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75158" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA : GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTT : TCAAAATAAACAACAAAAG</gDNA_template>
            <first_frame> C  F  I  N  N  H  F  C  *  K  G  K  L  H  Y  R  C  *  R  I  V  V  R  L  Y  W  V  R  Y  L  C  P  K  F  K  *  *  V  Y  C  W  M  Y  F  F  Y  Q  I  L  V  Y  Q  *  L  R  *  H  L  G  L  M  I  F  *  V  A  N  L  Y  S  Y  F  M  Y  T  C  T  K  I  L  L  N  L  D  V  I  S  V  L  A  C  I  N  W  V  N  L  *  L  N  V  Y  F  G  V  V  P  N  P  G  M  P  T  I  G  M  A  S  R  F  V  S  C  C  A  V  *  S  L  W  Q  D  L  C  S  A  I  :  E  V  C  V  S  G  R  T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  :  S  K  *  T  T  K  </first_frame>
            <second_frame>  V  S  *  T  T  I  F  V  E  K  E  N  S  I  I  G  V  E  G  L  L  S  V  Y  T  G  *  D  I  S  A  Q  N  S  S  D  E  Y  I  V  G  C  I  F  F  T  K  F  W  Y  T  N  N  *  D  N  I  *  V  *  *  S  F  E  *  L  I  C  I  V  I  S  C  T  L  A  Q  K  Y  Y  *  T  L  M  L  S  Q  C  W  H  A  *  I  G  *  I  Y  D  *  M  C  I  L  V  L  Y  Q  I  Q  A  C  Q  L  L  G  W  H  L  G  L  L  V  A  V  Q  Y  D  H  C  G  R  I  C  V  L  Q  * :   K  F  V  F  L  A  E  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  F :   Q  N  K  Q  Q  K </second_frame>
            <third_frame>   F  H  K  Q  P  F  L  L  K  R  K  T  P  L  S  V  L  K  D  C  C  P  S  I  L  G  K  I  S  L  P  K  I  Q  V  M  S  I  L  L  D  V  F  F  L  P  N  S  G  I  P  I  I  E  I  T  S  R  F  N  D  L  L  S  S  *  F  V  *  L  F  H  V  H  L  H  K  N  I  I  E  P  *  C  Y  L  S  V  G  M  H  K  L  G  K  F  M  I  E  C  V  F  W  C  C  T  K  S  R  H  A  N  Y  W  D  G  I  S  V  C  *  L  L  C  S  M  I  T  V  A  G  S  V  F  C  N   : R  S  L  C  F  W  Q  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T   : F  K  I  N  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77461" stop="77264"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHKQPFLLKRKTPLSVLKDCCPSILGKISLPKIQVMSILLDVFFLPNSGIPIIEITSRFNDLLSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="77465" e_stop="77386"/>
            <exon e_start="77135" e_stop="77053"/>
            <exon e_start="76021" e_stop="74682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.711" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77465" e_stop="77386" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77135" e_stop="77053" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.711">
            <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031"/>
          </intron>
          <exon e_serial="3" e_score="0.967">
            <gDNA_exon_boundary e_start="76021" e_stop="74682" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77465" stop="77386"/>
              <exon start="77135" stop="77053"/>
              <exon start="76021" stop="75514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77463" stop="77386"/>
              <exon start="77135" stop="77053"/>
              <exon start="76021" stop="75706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77455" stop="77386"/>
              <exon start="77135" stop="77053"/>
              <exon start="76021" stop="75390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77086" stop="77053"/>
              <exon start="76021" stop="75558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75980" stop="75286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75949" stop="75630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75874" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75692" stop="75173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="74944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="75124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75570" stop="75160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75539" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75507" stop="74735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75476" stop="74980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75458" stop="74794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75269" stop="74690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75158" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG : GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA : GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</gDNA_template>
            <first_frame> T  V  S  *  T  T  I  F  V  E  K  E  N  S  I  I  G  V  E  G  L  L  S  V  Y  T  G :   H  A  N  Y  W  D  G  I  S  V  C  *  L  L  C  S  M  I  T  V  A  G  S  V  F  C  N   : R  S  L  C  F  W  Q  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T  Y  N  C </first_frame>
            <second_frame>  L  F  H  K  Q  P  F  L  L  K  R  K  T  P  L  S  V  L  K  D  C  C  P  S  I  L   : G  M  P  T  I  G  M  A  S  R  F  V  S  C  C  A  V  *  S  L  W  Q  D  L  C  S  A  I  :  E  V  C  V  S  G  R  T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  I  I   </second_frame>
            <third_frame>   C  F  I  N  N  H  F  C  *  K  G  K  L  H  Y  R  C  *  R  I  V  V  R  L  Y  W  :  A  C  Q  L  L  G  W  H  L  G  L  L  V  A  V  Q  Y  D  H  C  G  R  I  C  V  L  Q  * :   K  F  V  F  L  A  E  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="77460" e_stop="77386"/>
            <exon e_start="76021" e_stop="74682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.711" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77460" e_stop="77386" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.711">
            <gDNA_intron_boundary i_start="77385" i_stop="76022" i_length="1364"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="76021" e_stop="74682" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77460" stop="77386"/>
              <exon start="76021" stop="75251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690121" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77458" stop="77386"/>
              <exon start="76021" stop="75323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77454" stop="77386"/>
              <exon start="76021" stop="75629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77446" stop="77386"/>
              <exon start="76021" stop="75533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75980" stop="75286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75949" stop="75630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75874" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75692" stop="75173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="74944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="75124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75570" stop="75160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75539" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75507" stop="74735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75476" stop="74980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75458" stop="74794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75269" stop="74690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75158" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG : GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</gDNA_template>
            <first_frame> F  I  N  N  H  F  C  *  K  G  K  L  H  Y  R  C  *  R  I  V  V  R  L  Y  W  :  E  V  C  V  S  G  R  T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  I  I   </first_frame>
            <second_frame>  S  *  T  T  I  F  V  E  K  E  N  S  I  I  G  V  E  G  L  L  S  V  Y  T  G :   K  F  V  F  L  A  E  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  L  *  L  </second_frame>
            <third_frame>   H  K  Q  P  F  L  L  K  R  K  T  P  L  S  V  L  K  D  C  C  P  S  I  L   : G  S  L  C  F  W  Q  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T  Y  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="77084" e_stop="77053"/>
            <exon e_start="76001" e_stop="74682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77084" e_stop="77053" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.943">
            <gDNA_intron_boundary i_start="77052" i_stop="76002" i_length="1051"/>
          </intron>
          <exon e_serial="2" e_score="0.967">
            <gDNA_exon_boundary e_start="76001" e_stop="74682" e_length="1320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77084" stop="77053"/>
              <exon start="76001" stop="75594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75980" stop="75286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75949" stop="75630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75874" stop="75162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75692" stop="75173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="74944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273394" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75595" stop="75124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75570" stop="75160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75539" stop="74805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75507" stop="74735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75494" stop="74856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75476" stop="74980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75458" stop="74794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75269" stop="74690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75209" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75158" stop="74758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCACTGTGGCAGGATCTGTGTTCTGCAATA : AACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</gDNA_template>
            <first_frame> D  H  C  G  R  I  C  V  L  Q  * :   T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  I  I   </first_frame>
            <second_frame>  I  T  V  A  G  S  V  F  C  N   : K  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  L  *  L  </second_frame>
            <third_frame>   S  L  W  Q  D  L  C  S  A  I  :  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T  Y  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="85421" PGL_stop="84697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85421" e_stop="84697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85421" e_stop="84697" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85421" stop="84697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348051" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTGTGTTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</gDNA_template>
            <first_frame> F  T  S  N  T  C  S  L  V  F  F  F  P  S  N  L  L  H  M  V  P  F  S  L  C  P  *  L  V  S  Q  I  V  I  I  L  F  S  F  *  T  P  H  N  T  H  T  H  I  H  S  N  N  I  F  Y  L  L  T  P  *  L  T  Q  I  L  A  F  L  T  Q  Y  N  V  K  S  K  N  T  R  F  E  T  I  I  R  S  F  *  N  K  *  *  S  N  C  *  S  R  I  K  V  T  I  T  Y  P  *  K  P  E  H  *  E  F  R  *  G  S  I  F  Q  F  K  L  Y  I  P  T  V  *  I  P  *  L  Y  I  S  M  L  N  C  T  C  C  G  T  F  T  H  F  D  N  V  I  W  L  H  F  V  C  S  L  L  L  L  A  I  N  Y  I  C  C  V  C  K  N  E  L  N  Y  I  F  P  *  S  H  S  Y  F  F  V  A  F  I  I  F  L  G  I  S  L  I  *  K  S  Y  S  H  A  H  *  A  I  L  Q  A  P  S  F  N  I  L  C  C  L  S  M  W  C  R  T  L  C  H  F  I  T  F  L  G   </first_frame>
            <second_frame>  S  P  P  T  L  V  P  *  C  F  F  F  L  L  I  F  F  I  W  F  P  S  L  F  V  H  N  L  S  L  K  *  L  S  S  S  S  L  F  K  L  P  T  T  H  T  H  T  F  I  Q  T  T  Y  S  I  Y  *  H  L  N  *  H  K  F  L  P  S  *  H  S  I  M  S  N  R  R  T  R  G  S  R  Q  S  S  G  A  S  R  I  S  D  D  Q  I  A  D  L  V  S  K  L  Q  L  L  I  P  E  S  R  S  T  R  S  S  D  K  V  V  F  F  S  L  S  Y  I  Y  R  Q  F  E  F  L  S  Y  I  *  A  C  *  I  V  L  V  V  V  H  S  H  I  L  T  M  L  F  G  Y  I  L  F  V  L  F  F  Y  L  L  *  T  I  Y  V  V  F  V  K  M  N  *  I  I  F  F  L  E  A  I  H  I  F  L  W  P  S  L  S  F  *  G  *  V  *  F  E  S  H  I  L  M  P  T  R  P  Y  C  K  L  P  H  L  I  F  C  V  A  *  A  C  G  V  G  L  F  V  T  S  *  H  F  L  A  </second_frame>
            <third_frame>   H  L  Q  H  L  F  L  S  V  F  F  S  F  *  S  S  S  Y  G  S  L  L  S  L  S  I  T  C  L  S  N  S  Y  H  P  L  L  F  L  N  S  P  Q  H  T  H  T  H  S  F  K  Q  H  I  L  S  I  D  T  L  I  N  T  N  S  C  L  L  N  T  V  *  C  Q  I  E  E  H  A  V  R  D  N  H  Q  E  L  L  E  *  V  M  I  K  L  L  I  S  Y  Q  S  Y  N  Y  L  S  L  K  A  G  A  L  G  V  P  I  R  *  Y  F  S  V  *  V  I  Y  T  D  S  L  N  S  L  V  I  Y  K  H  V  E  L  Y  L  L  W  Y  I  H  T  F  *  Q  C  Y  L  V  T  F  C  L  F  S  S  F  T  C  Y  K  L  Y  M  L  C  L  *  K  *  I  E  L  Y  F  S  L  K  P  F  I  F  F  C  G  L  H  Y  L  F  R  D  K  F  N  L  K  V  I  F  S  C  P  L  G  H  I  A  S  S  L  I  *  Y  F  V  L  L  K  H  V  V  *  D  S  L  S  L  H  N  I  S  W  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85213" stop="85010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSIMSNRRTRGSRQSSGASRISDDQIADLVSKLQLLIPESRSTRSSDKVVFFSLSYIYRQFEFLSYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 338 chains have been computed
$ 
$ memory statistics:
$ 524880 bytes spliced alignments in total
$ 144 spliced alignments have been stored
$ 3645 bytes was the average size of a spliced alignment
$ 31352 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1567 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 389 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:47:33
-->
