<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:47:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328034" ref_strand="+" ref_description="SGN-U328034        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | aspartate/glutamate/uridylate kinase family protein, contains Pfam amino acid kinase family PF00696 | chr1:9206978-9209887 REVERSE | Aliases: T24P13.2, T24P13_2(evalue: 9e-14, score=72.8) genbank/nr: gi|27368645|emb|CAD59684.1| hypothetical protein [Cicer arietinum](evalue: 2e-13, score=77)">
      <seq>tggtaacaaaaataacagaagccgccatgattgccaagcttgggattgatgtctacataactaaggcaggaacagaccattcagtgaaagcccttagtggattcttgaagggtggcatacctgatgactggctcggaacagccatccgttacatgagctgagctagatcataggttgctcgtgctgaatacgagggtttaaatcatttgaaaaagacacattccactaacagcaagttttcgttttatgacgtgcagtcccctcccttgtggtctctctattcatcctttttcctgttcatttctcagattttctgaactgtactattaatttgttgattaatagtagttgttttgatttaaggaagcgaaattttgacttgattaattgtgttgtaatgtcatattgatcgaattgacacttctattaatgcatctcatgtgttgcctgatggaaaccatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="1290" stop="143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="990" g_stop="926" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="925" i_stop="843" i_length="83">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="842" g_stop="444" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="464" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="476"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U328034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="990" e_stop="926"/>
          <exon e_start="842" e_stop="444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAGGTAATATGTTTTCATGGGAGCTTAGGATGAGAAACAAATATAACTCATCCCAACTAGTTCATTATTTGTTTGAATTGATGCAGGCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</genome_strand>
        <mrna_strand>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAG...................................................................................GCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315799" ref_strand="-" ref_description="SGN-U315799        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:3727802-3729037 FORWARD | Aliases: F26K24.10(evalue: 1e-51, score=201) genbank/nr: gi|15229864|ref|NP_187787.1| expressed protein [Arabidopsis thaliana] gi|6671937|gb|AAF23197.1| unknown protein [Arabidopsis thaliana](evalue: 8e-50, score=201)">
      <seq>gcattaactgaaagcgagccatttggatatagtaatcaaactaacatttaattgaggaaatgatacaagtagtttttacagtacctacacaatatgtagaagctagaaaagagatccaattgcaacctgcttcaacaaacttattacatattgtaaagcatcttcacatgatttcttaactactatggaactcgatacatgattaaaaccataatttctacaaaatacaaagtaaagactgcgtcttgaacccactgaccttaagactgtttcaactttgaacaacacatacaacatgaggaaccttctcattgtcaaaaggcaagtagacatactcgcgagcaaactcctctgcgatatccaatgctagctccccgtgcaacgccttgcaatacatatacaacacgacactcgctgcaatgttctgaagcatcaggagagtagcgaagcccgaactcaccaccatctgcaatatcaccccaaagcttgtccacccaccactagcagctcctacactcaccagaaaacttgaacaaccacccactaacaatccaatcagaaccccgaaaaatagcaacactgacaacgccacccatctcatccccttcaccaaataagcacttcttcgcaatgcttggtaaccccatttcgattccacaactacaatcacataagctaatgaccaattaacctgcaaccacataacaaccaatacaacaagtacacctacaaaaacacccaaacccattaagtaattcgaatcgtaacccacttcaaacccaagaaactgcacaccctgcaccacaatcaccgccaatagcccaaacagtaaaacaatcaaagcataaatgacacgcgaaacgataagggtggcaattagaggcaagaaagagtacaaaaccgacttcatagacgaaacaagcttgacgggtcttccataaaatccatggaaagtactgtagctgattgtagccaacgccaaaagagacagaacagaagctaaaagggtgtacacaaggagaagaagaagggactgggaatccggttgggtcagattccgaatcgggtcatatgggtcagtggaggtgaagaaggagaaggaaaggtgagatgggtgtcggttaaaaaggttggaatcggagtgaaagagagcggtttgaagagtaggatagatgatgagagaaaaagagagaggcaaaaggaaggaaactgaaagggctaagaaatggcgtgagtgagcattgattatccgctttgattgggaaagtactccccagagattaagggtgtgtggataaccagacattgaagatgatgatgaagaaaccaaagagatgatgagataaactggtctctgtttttgtgatttggggcttttttcccttttcttgaattttgcaggattgatgtgaaggaggagacaattggcaataaggttcaatattttcctcaatccactagaaaattttttttaaagcagaaaataacatgtattactttatgaagattgggttgtatcagttgtcaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="7437" stop="50080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7737" g_stop="9202" g_length="1466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1466" r_length="1466" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9203" i_stop="9546" i_length="344">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9547" g_stop="9574" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1467" r_stop="1494" r_length="28" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9575" i_stop="9759" i_length="185">
            <donor d_prob="0.635" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9760" g_stop="9771" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1495" r_stop="1506" r_length="12" r_score="0.583"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9772" i_stop="9915" i_length="144">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.080" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9916" g_stop="9949" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1507" r_stop="1539" r_length="33" r_score="0.618"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9950" i_stop="10230" i_length="281">
            <donor d_prob="0.552" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10231" g_stop="10257" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1540" r_stop="1565" r_length="26" r_score="0.630"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U315799" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1567</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315799" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7737" e_stop="9202"/>
          <exon e_start="9547" e_stop="9574"/>
          <exon e_start="9760" e_stop="9771"/>
          <exon e_start="9916" e_stop="9949"/>
          <exon e_start="10231" e_stop="10257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATAGACGAAACAAGCTTGACGGGTCTTCCATAAAATCCATGGAAAGTACTGTAGCTGATTGTAGCCAACGCCAAAAGAGACAGAACAGAAGCTAAAAGGGTGTACACAAGGAGAAGAAGAAGGGACTGGGAATCCGGTTGGGTCAGATTCCGAATCGGGTCATATGGGTCAGTGGAGGTGAAGAAGGAGAAGGAAAGGTGAGATGGGTGTCGGTTAAAAAGGTTGGAATCGGAGTGAAAGAGAGCGGTTTGAAGAGTAGGATAGATGATGAGAGAAAAAGAGAGAGGCAAAAGGAAGGAAACTGAAAGGGCTAAGAAATGGCGTGAGTGAGCATTGATTATCCGCTTTGATTGGGAAAGTACTCCCCAGAGATTAAGGGTGTGTGGATAACCAGACATTGAAGATGATGATGAAGAAACCAAAGAGATGATGAGAAAAACTAGTCTCTGTTTTTGTGATTTGGGGCTTTTTTCCCTTTTCTTGAATTTTTCAGGATTGATGTGAAGGAGGAGACAAGTGGCAATAAGGTTCAATATTTTACTCAATTCACTAGAAAATTGGTCTTTCCATTAGCCTTTGGTCAATTCGATTCGATTTATATATTTCGATATAATTATTTAATTTTTTACTAACCTCTAATTAAACTAACACAAATTTGATATGATTAATAAAATACTGATTAACACATTTTCAAATTTCAATCACTAACTTACAATTTTTGTCTTTAGATTTGGGTCACTCCAATTCCCCTCAATTGGGCCATATTGATATTGGGCTTGGCCTAGACTAGCCATTAGTGTCGTTAAATTCGATTTTTCGATTAAATCGAATTTAATTTGTTCAAAATCAAAAATCTAAATTAAAAAAGTTTGTTTTGATCAATTTTTTTCGATTTAAACCAGAGTGTGTGCAGCCGTACATATGATTCAAGCAAAGACAAGAAAATTGAATCATGGGATGTTTTTTAAGTCTTAACCTAACTTTTGGATTGAGTTACAATCGGGTGTCATGTGAAAAATATATCTTTCACCTAGTTCCGTGAGACTTGTCTAGTGTATTTCTACCATTCCGTTTGCACACAGGATAAACTCCAATCCATCTTCGCATTTAACGACCAGTTTACTATGGCAAGGCTCTTCAAGCAACTATTAAAAAGGGATAAAGTTTACGTACATTCTAAACATAATTATTTCGAATAGGTTGACATATGCTCATGTATATTAATGCAAAATCCATGTCATTCTAGCCAAATTTAAACCTTGTTTGAATAGTTTGTCATTCACCTAGTTCTAAAAGAGAAGAAAAGTAAGTCATTTAGACTATACATGAAAAGGTTGACTATTTGCTTTACTTAAGTGCTAAGATATTATTTTGCTAACATCTTTTTCAATAATAGAAGTATTTTTCTTACTTTATAAAATAGATTGTATACATGCATTTAAATATATGTTGAAATACTTTTGAGAGAATTATCAAAGTTTGGGTGGGTGGGTGAGAGTAATTATGGAGTTGTTCAATTATCAGATAGACAAAGCAAGTTAAGAATTGACAAAACATTTCATTTTCTGAGTAATAGTACAAATTTAACAACTACCTCCTAGTTTTTTTCTCTC</genome_strand>
        <mrna_strand>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATAGACGAAACAAGCTTGACGGGTCTTCCATAAAATCCATGGAAAGTACTGTAGCTGATTGTAGCCAACGCCAAAAGAGACAGAACAGAAGCTAAAAGGGTGTACACAAGGAGAAGAAGAAGGGACTGGGAATCCGGTTGGGTCAGATTCCGAATCGGGTCATATGGGTCAGTGGAGGTGAAGAAGGAGAAGGAAAGGTGAGATGGGTGTCGGTTAAAAAGGTTGGAATCGGAGTGAAAGAGAGCGGTTTGAAGAGTAGGATAGATGATGAGAGAAAAAGAGAGAGGCAAAAGGAAGGAAACTGAAAGGGCTAAGAAATGGCGTGAGTGAGCATTGATTATCCGCTTTGATTGGGAAAGTACTCCCCAGAGATTAAGGGTGTGTGGATAACCAGACATTGAAGATGATGATGAAGAAACCAAAGAGATGATGAGATAAACTGGTCTCTGTTTTTGTGATTTGGGGCTTTTTTCCCTTTTCTTGAATTTTGCAGGATTGATGTGAAGGAGGAGACAATTGGCAATAAGGTTCAATATTTTCCTCAATCCACTAGAAAAT........................................................................................................................................................................................................................................................................................................................................................TTTTTTTAAAGCAGAAAATAACATGTAT.........................................................................................................................................................................................TACTTTATGAAG................................................................................................................................................ATTGGGTTGTATC-AGTTGTCAAAAAAAAAAAAA.........................................................................................................................................................................................................................................................................................AAAAAAAACT-CGAGACTAGTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328255" ref_strand="+" ref_description="SGN-U328255        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G63020.1 | Symbol: None | disease resistance protein (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. | chr5:25299874-25303228 REVERSE | Aliases: MJH22.8, MJH22_8 (evalue: 2e-15, score=79.3) genbank/nr: Disease(evalue: 5e-29, score=130)">
      <seq>ctgcaatgaactttttcctctgttaaacatccttttttttcattgaattgaagaagaacttgtgattttcatctgatcctgcctttgcttccttgtaaatttagtcaatagctatggaattcttatctatttttgtggaaaaactaactgattgcttgatccagccagttgcgcggcagattggttatttctactactacaagagaaacatgagatgtatggataaagaatgtgagaagctgaagaatatcagaatgacaatgcagcgaaaagcggaagatgccaggagaaacttacaagacatttcacctaatggcaaggtttggttaactagtgttgatacaactactgcagatgtggaaggcgtgatgcgaggtgtagctgaggttgaaaggggttgcttctatggtgtgtgcccgaatttgaagtcacgttactcgatgagtaggagagctaagaaaattacactggagttgattgaacttcaaaatgaaagcaataagcctgatgttttgtcatttgatcatccagtcgaaagtgaacctgaggctatgtgtagtaacaatgttgaggagtttgagtccagaaaattgaaggaggatgaggtcatggcagctttgagagatgacgaggttgctattattgggatatgtggtatgggtggagttggtaagacaacactgactgagaaaatcagacaaatggcgaaaaaagaaaggttgtttaaagatgttgtcatggtaattgtcagtcaacaaatagactttaaaagaattcaggatgagattgcaggaggagttgggctgacattagaaggggatgatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="10384" stop="11812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10684" g_stop="11512" g_length="829"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U328255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10684" e_stop="11512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATGAACTTTTTCCTCTGTTAAACATCCTTTTTTTTCATTGAATTGAAGAAGAACTTGTGATTTTCATCTGATCCTGCCTTTGCTTCCTTGTAAATTTAGTCAATAGCTATGGAATTCTTATCTATTTTTGTGGAAAAACTAACTGATTGCTTGATCCAGCCAGTTGCGCGGCAGATTGGTTATTTCTACTACTACAAGAGAAACATGAGATGTATGGATAAAGAATGTGAGAAGCTGAAGAATATCAGAATGACAATGCAGCGAAAAGCGGAAGATGCCAGGAGAAACTTACAAGACATTTCACCTAATGGCAAGGTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</genome_strand>
        <mrna_strand>CTGCAATGAACTTTTTCCTCTGTTAAACATCCTTTTTTTTCATTGAATTGAAGAAGAACTTGTGATTTTCATCTGATCCTGCCTTTGCTTCCTTGTAAATTTAGTCAATAGCTATGGAATTCTTATCTATTTTTGTGGAAAAACTAACTGATTGCTTGATCCAGCCAGTTGCGCGGCAGATTGGTTATTTCTACTACTACAAGAGAAACATGAGATGTATGGATAAAGAATGTGAGAAGCTGAAGAATATCAGAATGACAATGCAGCGAAAAGCGGAAGATGCCAGGAGAAACTTACAAGACATTTCACCTAATGGCAAGGTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333200" ref_strand="+" ref_description="SGN-U333200        Tomato 200607 #1 [2 ESTs aligned] genbank/nr: Leucine(evalue: 4e-10, score=67.4)">
      <seq>ctcactcacttttgcaatgacactgttgagggcattgagttccctcggttgcggaaaatgcacttcagtagcttaccagagttccaaaatttctggcatacagccaacaactctatcactgactcaaatcctctttttgatgaaaaggtttcttgtcccaacctggaagatctgtatatcgatagggctgacagcataactgctctctggtctcaccaacttccaactacctacttcagtaaacttgtaaaattcgaagtagatggttgcggaaaattgacaaacttgatgtctccatcagtggccagaggtctcctgaatctccggaaactaaagatagaaaattgtgagtcaatggaagaagtgatcacagaagaggaacaacaaggagaagaaatcatgagtaatgagcctttattccccctgttggaacagctgaacctttacaatctgccaaagctggggcacttctttctagcgaagcgtggtcttgaatttccatttctcagggatgtgtgcattcataactgctctgaaatgaaggcgtttgtccaacagggaatatatgtgagtacaccgagtctcgaaagtgtaaacaatgatgatgaggtgaaagtggttgatctcaataaagcgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="13095" stop="14488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13395" g_stop="13541" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13542" i_stop="13693" i_length="152">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13694" g_stop="14188" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="642" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U333200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13395" e_stop="13541"/>
          <exon e_start="13694" e_stop="14188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAGGTTCCCTTCTAATGCTCTACATGTGACCTATCATGAAAAAAAGAAAAACTTTTATGAATTAAAAGCTACCTTTTACTTGAGCATTAGAGATATTTACTTACACAAAATCAAGTTCATAATCAAATAGATATTTATAAATTGTATATTTGCAGGTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAACTGCTCTGAAATGAAGGCGTTTGTCCAACAGGGAATATATGTGAGTACACCGAGTCTCGAAAGTGTAAACAATGATGATGAGGTGAAAGTGGTTGATCTCAATAAAGCGATGTTC</genome_strand>
        <mrna_strand>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAG........................................................................................................................................................GTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAACTGCTCTGAAATGAAGGCGTTTGTCCAACAGGGAATATATGTGAGTACACCGAGTCTCGAAAGTGTAAACAATGATGATGAGGTGAAAGTGGTTGATCTCAATAAAGCGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321226" ref_strand="+" ref_description="SGN-U321226        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: AT4G26090.1 | Symbol: None | disease resistance protein RPS2 (CC-NBS-LRR class), putative, domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. identical to RPS2 (gi:13661831) | chr4:13224347-13227881 FORWARD | Aliases: F20B18.200, F20B18_200 (evalue: 6e-09, score=59.3) genbank/nr: Leucine-rich(evalue: 2e-23, score=113)">
      <seq>gatctcaataaagcgatgttcaattctaaggtttcgtgtcccagactggaaaagctacaactcttttgtgctcatagtataactgctctatgctctcatcaacttccaacaggctactttagcaaacttgaagcgttgcatgtatcgttttgtggaaatttgagaaacttgatgtcttcatcagtggccaggggtgttttgaatctccaaattctacatataggatattgcgagttgatggaagaagtgatcacaaaagaggaacaaggagaagaaattatgacaaatgagcccttatttcccctgttggaagagttgaggcttcaaagcctgccaaagctggggcatttctttctcgctatgcacgctcttgaatttccatttctcagagaagtgtcgattcatgaatgccctgatataaagacgtttgtccaacagggatctgtgagtacaccgagtctcggaagtttgaacaatgatgatgaggtgaaagtagttgatctcaataaagtgatgttcaattttaaggttacttgtcccagtctggaagagctatgtatctggatggctcacaacataactgctctatgctctcaccaacttccaactgcctactttagcaaacttgaaagtttggatgtatcgacttgtggaaaattgagaaacttgatgtctccattactggctagaggtgttttgaatctccgaatactaaagatacaagactgtcaatcaatggaagaagtcatcacagaagaggaacaaggagaaaatatgactaatgggcccttatttccccggttagaacagctggatctttacgatctgccaaagctggggcatttctttcagacgaagcatgctcttgaatttccatttctcaggaaagtgtttatttatagctgcccttcaatgaagacgtttggcctcggttctgtgagcacaccgagtctcgaaagtgtgaactatgatgatgaggtgaaagtagatgatctgaatacatggatacaacagatgttcaattctaaggaagaagatgtaagtgatgactgtgaatatgaaaaagacgttactgacggtaatgaatctgaagaagatttaagtgatggctgtaaatctgaacaagatgtaagtgatggcagtgaatctgaatcttcagtccagtgaaggcagaagctagcatgttgtcgatgaatccaaagctatgaaggtaataagttctcgatggaatagtttaagtgtgacaagtgaagctcgaagacctatatatgctcgttatggaagcagagatgtatacctgtaactttattagtaatatctagtaattccttgactgtgaacacaagtattatttttgatatcactgtaggattctataaactttaaattttgaatccgactatatgttgttcattcttctttcatttatatttaacagctaatatgttgctttattttctcatgtaatcttgcattctgtgtcgttttgaaagatttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="13868" stop="17062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14168" g_stop="14197" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14198" i_stop="14421" i_length="224">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14422" g_stop="14919" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="528" r_length="498" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.678" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15600" g_stop="16100" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="1029" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16288" g_stop="16762" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1504" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U321226" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14168" e_stop="14197"/>
          <exon e_start="14422" e_stop="14919"/>
          <exon e_start="15600" e_stop="16100"/>
          <exon e_start="16288" e_stop="16762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCAATAAAGCGATGTTCAATTCTAAGGTTTGTCTTGTGCCTCTAGTTGTTTAACTAATTACTGCTTTCTTTCCGCTTTAACTAGTAAATAGTAATAGTTATTTCTGTTTGTCACTTAAAGCAACTTTTTTTAGTTTTTACTTGTTGTTACTATGATGTAAGATGAGAATATGGTTCAATTTTGGATTTGTACTTTAAGCTATATTGATTTTCCATCCCTTATATAAAACACAAGGCCTCAACATTCGCAGGTTTCGTGTCCCAGACTGGAAAAGCTACAACTCTTTTGTGCTCATAGTATAACTGCTCTATGCTCTCATCAACTTCCAACAGGCTACTTTAGCAAACTTGAAGCGTTGCATGTATCGTTTTGTGGAAATTTGAGAAACTTGATGTCTTCATCAGTGGCCAGGGGTGTTTTGAATCTCCAAATTCTACATATAGGATATTGCGAGTTGATGGAAGAAGTGATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAGGTTTGTCTTGTGCCTCTAGCTGTATAACTAATTACGATATATATTTTTGTCATGCACTAATACCTTTTTTCTAAAATCTTGGCTAAACACCTCAACTAGCTAAAATAAGCACTTTTGGCTTCTCAACTTATCAATTACTGTTTTCTTCGTACGTGTTCGCTTTTGATTGAGATCAACAGATGAACATGCTTTAAGTATTCTTAATTGTGCCATTTAGTTGTAGTATGACATTATTCTAAAATACCATCAGTAGTCATTTGTGTGAAACTGGAAGGAAAATACTTTGTTAGAAGTTGGAGAAAATTTATGCACAAAGTCTTATTTCTGTGAAACTACAAGGGGAATAGTTTGTTAAAAGTTGGAGAAAAGATATGCATAGAGTCTGATGTTTGAGTGCTTGGTAAGTGTTGCAGAATGAACGTAGACAATATAGATAGAGGATTTGTAGGGATATCTTTTATTTCTTTCCTTAGCTAGCACCAATGTACATTTTGGAATGAAATATCAAGTCATTTTCCATACCTTGTCTATTACATGTTATCGTAGTCAGGTCCATGCTACAGTTGGGCCAGTGCGTGAAGGTAGGTGTTAGAGTGGGGTAGAATCCCATATTGATTGGGGATGGAATGGTGGTCGGCTTATATGGATTTGGACGATCCTCATGTCATCAACGTTTGTAGGTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAGGTTTGTCTTGTGCTGCGAGCTGTATAAATTAATTAACTCTAGTGCTCTCTTTACGTCTTAACTAGTACTCCATTTCATAGTTGCAATAGTAATATTGAGATACTTATAATTTATGTTTGTTCAAGTATATATTGTACTTTTATATATTGTACTTTCATCTATGTTCTTTTCCAATCTCTACTCTCAGGAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAA</genome_strand>
        <mrna_strand>GATCTCAATAAAGCGATGTTCAATTCTAAG................................................................................................................................................................................................................................GTTTCGTGTCCCAGACTGGAAAAGCTACAACTCTTTTGTGCTCATAGTATAACTGCTCTATGCTCTCATCAACTTCCAACAGGCTACTTTAGCAAACTTGAAGCGTTGCATGTATCGTTTTGTGGAAATTTGAGAAACTTGATGTCTTCATCAGTGGCCAGGGGTGTTTTGAATCTCCAAATTCTACATATAGGATATTGCGAGTTGATGGAAGAAGTGATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG...........................................................................................................................................................................................GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328736" ref_strand="+" ref_description="SGN-U328736        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G09970.2 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative, Similar to A. thaliana receptor-like protein kinase (gb:RLK5_ARATH). ESTs gb:ATTS0475,gb:ATTS4362 come from this gene isoform contains a TG acceptor site at intron. | chr1:3252319-3255656 FORWARD | Aliases: None (evalue: 2e-06, score=49.7) genbank/nr: Leucine(evalue: 1e-17, score=92.8)">
      <seq>tttggccttttccagtatccattcagaggttgtcgaatctgaggacgttgtgtctgagtaatttaaggttggaggacatatccattattggtcaacttgtcactttagagattcttagcataagagattctcagttagaggagctgcccaaggagataggtaaattgactaatctaatcatgttagagttgcggaatgagaaaaaaccactggaaatgatttcaccaggggtcttatcaagactagttcgattggaggaactacatataatgaatgtaagaaattgtagttactccaccttgaaggaactagaatccttatcgagattgactgcactgacattaagtgaatgttccggagatgtgatctacagtaacatgggccttacctccaagttgacacagtttgcaattacagtgggtaaagcttacagagcgactccaagcatggatgattacgaccagaatatttctttagaggtcaccgagactgccccattaggtgattggatccgccacctgttgagcaagagcgaacttgtacattcaaccggagagggaaccaagaacgtgctggccgagttgcagctggatgaatttcagaatgtgaaatatctctgcctngaatcttttgattcattgacacatatccaatgtcagaataatgtttcatttcccaaactcgaaaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="19227" stop="20518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19527" g_stop="20218" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U328736" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19527" e_stop="20218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTTTTCCAGTATCCATTCAGAGGTTGTCGAATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGATCCGCCACCTGTTGAGCAAGAGCGAACTTGTACATTCAACCGGAGAGGGAACCAAGAACGTGCTGGCCGAGTTGCAGCTGGATGAATTTCAGAATGTGAAATATCTCTGCCTGAAATCTTTTGATTCATTGACACATATCCAATGTCAGAATAATGTTTCATTTCCCAAACTCGAAAAACTG</genome_strand>
        <mrna_strand>TTTGGCCTTTTCCAGTATCCATTCAGAGGTTGTCGAATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACCAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGATCCGCCACCTGTTGAGCAAGAGCGAACTTGTACATTCAACCGGAGAGGGAACCAAGAACGTGCTGGCCGAGTTGCAGCTGGATGAATTTCAGAATGTGAAATATCTCTGCCTNGAATCTTTTGATTCATTGACACATATCCAATGTCAGAATAATGTTTCATTTCCCAAACTCGAAAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336817" ref_strand="+" ref_description="SGN-U336817        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgcaatctacttgatctaactacgtgcagacatgccaaggacttgggcattggtcttggcatggatgatggcaaaacagtgcaacacaagttcaaggtgcttgggtgttggcaaggcagcttgaacgtgcatggcttacgtgcgggctaagggcgttgacaagacaacatgttgacttgatgaagcaaggctgtgaagacttggcaagggcaaaaaaaaaagcagttcaccccaaattgctgaaataaaactaagtggggaaaaaagctaaaatattccaaatggtggaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="29085" stop="28194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28785" g_stop="28494" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U336817" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28785" e_stop="28494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGACGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCTGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</genome_strand>
        <mrna_strand>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGGCGTTGACAAGACAACATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGGCAAAAAAAAAAGCAGTTCACCCCAAATTGCTGAAATAAAACTAAGTGGGGAAAAAAGCTAAAATATTCCAAATGGTGGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313174" ref_strand="+" ref_description="SGN-U313174        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC029 | no apical meristem (NAM) family protein, similar to N-term half of NAC domain protein NAM (Arabidopsis thaliana) GI:4325282 | chr1:26125803-26127078 FORWARD | Aliases: F10D13.14, F10D13_14, ANAC029(evalue: 2e-88, score=322) genbank/nr: gi|56744294|gb|AAW28573.1| putative NAC domain protein NAC2 [Solanum demissum] (evalue: 3e-103, score=378)">
      <seq>tcaatattattattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaaggtatatatagtggaacaaaatatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaagacacacaagaacctcaaataatgagtgttactaatcctattcatgaagttgtggcttctaatggacaacaaacattgaaactaccaaggacttgttcactatctcatttattagaaatggattattttggatcaatttcacaactatttgatgacaataattcatacaatactattagccaaaataatacattaatgaccaatgttaatggatatgttatgcctcatcaagccatggagaaatttcaactaggggaagtgtcacaaatttctatgaatccatcctatcaatttcagtaagaaggcggtacgcggcgattaaatatttcgacaacaataattactatgcctcaatttaaaacaagttgattactagtatctcatcaataattgtaacgtatagatgaaatttaaaggtcatggtactataggtaaaaaaaaaaaaaaagattgttgtattactatagaattttattttcgagcacttgtttgaaaaataattaatttggttctgaaattataatattaatattttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60017" stop="62442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60317" g_stop="60642" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="61018" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="607" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61525" g_stop="62143" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="1226" r_length="619" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1227" polyA_stop="1239"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U313174" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1226</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60317" e_stop="60642"/>
          <exon e_start="60738" e_stop="61018"/>
          <exon e_start="61525" e_stop="62143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAG</genome_strand>
        <mrna_strand>TCAATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313173" ref_strand="+" ref_description="SGN-U313173        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC029 | no apical meristem (NAM) family protein, similar to N-term half of NAC domain protein NAM (Arabidopsis thaliana) GI:4325282 | chr1:26125803-26127078 FORWARD | Aliases: F10D13.14, F10D13_14, ANAC029(evalue: 5e-54, score=185) genbank/nr: gi|53749461|gb|AAU90315.1| putative NAC domain protein NAC2 [Solanum demissum] (evalue: 9e-48, score=192)">
      <seq>attattttcctcttacatagaatcaaattcccctacatcaaccccactttatcatacttctcttagcttataatttattttttttataaaacctttgttcttctcctccacaaatattcatatatattaacttttttttttaaaaaaaaatggttggtaaaaataattccaatcacctccctcctggatttaggtttcatccaacagatgaggaattaatcatgtattatcttcgaaatcaagctacctccaagccttgtccatcttcaatcatccccgaagttgatgtctataagttcgatccctgggaattgcctgaaaaaactgaatttggagaaaaagaatggtatttcttcaccccacgtgatagaaaatatccaaatggtgttaggccaaatagggcagctgtgtctggttattggaaagccacaggcacagataaagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgaggttggatgattgggtactttgtagaatttataagaagaagaatttggaaagagctatagagatgatgaaagttgaagaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60025" stop="61904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60325" g_stop="60642" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60738" g_stop="60863" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="444" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60970" g_stop="61018" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="493" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61525" g_stop="61604" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="573" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U313173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60325" e_stop="60642"/>
          <exon e_start="60738" e_stop="60863"/>
          <exon e_start="60970" e_stop="61018"/>
          <exon e_start="61525" e_stop="61604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTGGTTAGTAAACATATATATATATATATAATCGCGTTTTAATTCAAATAATTATTTTTATGAATTAATATTGAGTTTTTTTTGTTTTTTTAATGTAGAAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAAAAACATTATTACGTTAGCGTTGATCAGTGAATATAAGTTAAATTTTTTATACTATTCATTCTTTTTCTTTTTTTTTTGTTATGACTAATACTTAGTTTTTTGTTGGTGATTTTTCAGTTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGA</genome_strand>
        <mrna_strand>ATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG...............................................................................................AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG..........................................................................................................ATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334195" ref_strand="+" ref_description="SGN-U334195        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: ANAC029 | no apical meristem (NAM) family protein, similar to N-term half of NAC domain protein NAM (Arabidopsis thaliana) GI:4325282 | chr1:26125803-26127078 FORWARD | Aliases: F10D13.14, F10D13_14, ANAC029(evalue: 1e-16, score=84) genbank/nr: gi|18409291|ref|NP_564966.1| No apical meristem (NAM) protein family [Arabidopsis thaliana] gi|25354720|pir||T52343 hypothetical protein [imported] - Arabidopsis thaliana gi|2780192|emb|CAA10955.1| unnamed protein product [Arabidopsis thaliana] gi|12597796|gb|AAG60108.1| unknown protein [Arabidopsis thaliana] gi|13430578|gb|AAK25911.1| unknown protein [Arabidopsis thaliana] gi|15293163|gb|AAK93692.1| unknown protein [Arabidopsis thaliana](evalue: 9e-15, score=84)">
      <seq>tatgttggtattaaaaaagctcttgtattttataaaggaaaaccccctaaaggtatcaagactgattggatcatgcatgaatatagattgagtgaatcaaggactcaaccaactaggccaaatggatccatgagggtaagcctttggaaacactatttttttcctagatattttgattgaatattcactaagaaaattagtggatattttaaagtagttcaatgtaaatgtatacgtttttttttctttcagtgagctgattaatgggaattgagtagaaaaatattttttttatagctcattgattcgtgatgggaaaaataattatttccgataatgagtctctaattttgtttagctataaaatttggttatcgcttttttttttcatagagtatagtttaagttttgtatattaatcaaataatcatttaaaaaataattatgtgtaatgattgatatatactatattgaaaaatatggcatgtaactttctatagcaagttaagttgtacttataataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="+" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="60584" stop="61707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60884" g_stop="61407" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="+" ref_id="SGN-U334195" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60884" e_stop="61407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAA</genome_strand>
        <mrna_strand>TATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGGTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323949" ref_strand="+" ref_description="SGN-U323949        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | integral membrane family protein, contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) contains plant integral membrane protein domain, TIGR01569 | chr5:4967014-4968031 FORWARD | Aliases: F8M21.180, F8M21_180(evalue: 2e-48, score=189) genbank/nr: hypothetical(evalue: 2e-76, score=288)">
      <seq>aatcttaatagatacttgagccatcgaaaaaacgaatgatgaaggcggtatcagttgaatctggagaagcatcaaaggctaaaggtcatggagttaacagaggactctctgtatttgatcttgttcttcgtattgttgcgattgttggtaccttagctggagctgtagcaatgggaactgctgaacaaactcttccttttgccacacaacttgtgcaattttcagctcaatatgatgattttgactcatttaagttgttcgtgattgtgaatgcaatagtatgtgcatatcttgctcttactctaccattttccatctttcatattatgaggagcagagcaggaaaaagtcggatcttgctcatcttccttgacgcgataatgctggttcttctcacatctggagcctctgcagcagctgccattgtgtatttagcacatactgggaacacttctgctaactggttttcagtttgtcaacagtataccgatttctgccaacgatctgctggctctctcatcggctcatttggcgcgatggtgtgtcttgttctcctcatcattttctcagctgtcgcgatatccaggcgataaatcaatgctgtttacattggcttgtgtatctgttgtgtttgatatttgactaaagtttcatgctttggattttgtatgcaatttatcctgttacttatatcaataatatatattgtgcctgtttagtttttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="65181" stop="63299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64881" g_stop="64629" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174">
            <donor d_prob="0.870" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64454" g_stop="64331" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="377" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381">
            <donor d_prob="0.836" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63949" g_stop="63600" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="727" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63599" i_stop="63430" i_length="170">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63429" g_stop="63421" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="736" r_length="9" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U323949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64881" e_stop="64629"/>
          <exon e_start="64454" e_stop="64331"/>
          <exon e_start="63949" e_stop="63600"/>
          <exon e_start="63429" e_stop="63421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAAGTATGTCCATCTATAGAAACTACACATTTTCTATATTTTGAATGATTGATACAGTCTCGGAACTACAAGTTTCAAAAGTCTTTCTTTCTTAAACTTCGTATTCAGGTCAAACTACTTCATATAATTAACACAGAGGGAGTATATTTCATCATCTTTTTTTTTTTCTTGATATAGGTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCGGTAATGTAGATTGAGCTGTTTTTTATATAGTCAGACCTCTTTATAACAACGTTGTTTGTGAGGATATTTTCTGACATCTATAGTGAAATGATAGGGTAAGGTGTATACATATTGTATCCCTATCTCTATCTCGTGGAGATAGTGAGGTTGAGTTTGAAAGATGCTTAGCTCAAAATAACATCAAAATAATGTGATAAATTGAAGCAAAGAACGATACGTGATAAGAAAAATCGAAGGGCAAGATGAAGAGTTAGTTTCACGCAGAGTTGGTTGTTACATACAAACGTTGTTATAGAGAAGTCTGACTGTAGTGTTTCGCTATAACTTTGTGGTTGATTAGAGTAGATTATATGTTTATAATTTTCTTGTTAAATTTTGAAGATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAAATTGGAGTTCAAAAAATGATTCATTTTTTCTCAATTTACTCATCAATTGGAAGTTTAAGCCTCAAAATGAGAAAAAACTCAAAATATTCCATTTTATCTTTGGTTTAGGATTCAATTTACCTATCAAAATTTTATGTATGAAATGCTCAATCATCTTTTTATGTATTCAGAAGAAATAA</genome_strand>
        <mrna_strand>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA..............................................................................................................................................................................GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG.............................................................................................................................................................................................................................................................................................................................................................................................ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAA..........................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327797" ref_strand="+" ref_description="SGN-U327797        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | mitochondrial transcription termination factor family protein / mTERF family protein, weak similarity to mtDBP protein (Paracentrotus lividus) GI:4584695; contains Pfam profile PF02536: mTERF | chr4:1321859-1324004 FORWARD | Aliases: T4I9.13, T4I9_13(evalue: 1e-43, score=172) genbank/nr: gi|3924606|gb|AAC79107.1| hypothetical protein [Arabidopsis thaliana] >gi|7269784|emb|CAB77784.1| hypothetical protein [Arabidopsis thaliana] >gi|15236230|ref|NP_192208.1| mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (evalue: 8e-42, score=172)">
      <seq>gtgggatgtccccaggtacttgcactaaatctcgacattatgaagaagagttttgagtatttcaaaactacaatggctaggcctttggaagatttggtcgctttcccagctttcttcacttatggtctggagtccacaataaaaccaagacataaaaagatagctgagaaggccttaaaatgttcccttgcatggcttcttaattgttctgatgagaaatttgatcagcggatgagttacgacattattgacatggaagaaatggaagtaggtgaatcatccttcgatatgaatactctattggagcccagaaatgatgaatcagcttctgattacgacgatgattacagtgaagacgacaatgtatagactactcaagtggatgttctgttcactcccccagagtatgtaaatgctaactatttcaaattttctgagttttgaatggccatgaaggtggccaatggggtttatcaaactgaatataggaagggggatataaaaaaaaaaaaaaaaaaatcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="67272" stop="66172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66972" g_stop="66475" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="519"/>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U327797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66972" e_stop="66475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGAT</genome_strand>
        <mrna_strand>GTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318079" ref_strand="+" ref_description="SGN-U318079        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G39970.1 | Symbol: None | peroxisomal membrane protein (PMP36), identical to 36kDa-peroxisomal membrane protein (PMP36) GI:15146342 from (Arabidopsis thaliana) | chr2:16690910-16693740 REVERSE | Aliases: T28M21.13, T28M21_13 (evalue: 4e-53, score=204) genbank/nr: gi|21593883|gb|AAM65850.1| putative peroxisomal membrane carrier protein [Arabidopsis thaliana](evalue: 3e-51, score=204)">
      <seq>cttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtaatcccagcgttgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccgttgttggttgtgaagtcgaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttggctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactatttaataaatcttcttgctggatgattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaagaaagccatagtaagcttgaaagtgaaaagtagctcagatgaatgaaactattatttgagataactgcccttttggggttataattggataattagtgcatctgttgactataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="75752" stop="71194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75452" g_stop="74690" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74689" i_stop="74583" i_length="107">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74582" g_stop="74565" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="781" r_length="18" r_score="0.778"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U318079" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75452" e_stop="74690"/>
          <exon e_start="74582" e_stop="74565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGTGCTTCTGCTATGCCAAAACTAAAGGGGTCGTTTTGTTTGGAGCAAGTTATACTAGGATTAATTAGATCTCGAAACAAGTATGGAACATTGAGTGAAAAGTCAAAATAAACAACAAAA</genome_strand>
        <mrna_strand>CTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTAATCCCAGCGTTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCGTTGTTGGTTGTGAAGTCGAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTGGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTATTTAATAAATCTTCTTGCTGGATGATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATAATTGGATAATTAGTGCATCTGTTGACTA...........................................................................................................TAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318078" ref_strand="+" ref_description="SGN-U318078        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT2G39970.1 | Symbol: None | peroxisomal membrane protein (PMP36), identical to 36kDa-peroxisomal membrane protein (PMP36) GI:15146342 from (Arabidopsis thaliana) | chr2:16690910-16693740 REVERSE | Aliases: T28M21.13, T28M21_13 (evalue: 4e-98, score=355) genbank/nr: gi|21593883|gb|AAM65850.1| putative peroxisomal membrane carrier protein [Arabidopsis thaliana](evalue: 3e-96, score=355)">
      <seq>actgtttcataaacaaccatttttgttgaaaaggaaaactccattatcggtgttgaaggattgttgtccgtctatactgggcatgccaactattgggatggcatctcggtttgttagttgctgtgcagtatgatcactgtggcaggatctgtgttctgcaatagaagtttgtgtttctggcagaaccattgtctttacgctgagcagtaaagactgaaaaatgtcaagtgccttggctaatgggctggctggagctggtgggggcataattgcacaaataattacttaccccctccaaactgtcaatacacggcagcagactgagagggtctcgagagagggccgtgattctcgtggcagtgccctgtttcaaatcttacaggtggttagaagtgaaggcttgccagggctttacagtggcctgaagccttctctgctcggaactgccgtgtcacagggtgtctactactatttttaccaggttttcaagaacagggctgaggctatagcagctgcaaataagaaaagaggccgaggggatggttctgttgggatgctttcttggctcgttgtggcagctcttgcaggttcagtaaatgtattgttgacaaaccctatatgggttctagttactcgtatgcagactcatacacaagcagaaaggaaaatcgtggaggcaaaaagggaaaccctattaaaagaagcttctcaaagtgtcttgacagcttcttccttggaagtacagctcgctgaacttgattcgttgaaacctcatccttacgggacattgcaagcagcacgagaggtttataatgaatcaggagtcacaggattctggaaaggagtcatcccagcattgatcatggtgtctaatccctcgattcagttcatgattattgagagtttgtcgaagcagttaagggctaaacgtgctgcgaagaataaagaccagcagaatataactgctttggaagtttttattatcggagcctttgctaaacttggagcaactgtatgcacatatccattgttggttgtgaagtcaaggcttcaagcaaagcaggagattagtggaaatgtctcattacgatattcaggtacagtcgatgctattattaagatgattcatcacgaaggattcagatgcttctatcaaggaatgcgcacaaaaatagtgcagagtgtctttgcagcctctgtacttttcatggtgaaggaagagctcgtcaaagtctacgctgttttagctaacaaaagtaaggttaatgtatagcttgcagtcataaagtgaactacttaataaatcttcttgctggataattgcatatgatttgtactgtatttgtattcaaattacagagtaataattgtaatattccctaaagaaagcatagtaagcttgaaagtgaaagtagctcagatgaatgaactattattgagatactgcccttttgggttatattttgataatagtgcatctggtgacttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="77765" stop="74386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77465" g_stop="77386" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77135" g_stop="77053" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="163" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.711" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76021" g_stop="74682" g_length="1340"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="1496" r_length="1333" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U318078" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1503</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77465" e_stop="77386"/>
          <exon e_start="77135" e_stop="77053"/>
          <exon e_start="76021" e_stop="74682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGGGTAAGATATCTCTGCCCAAAATTCAAGTGATGAGTATATTGTTGGATGTATTTTTTTTACCAAATTCTGGTATACCAATAATTGAGATAACATCTAGGTTTAATGATCTTTTGAGTAGCTAATTTGTATAGTTATTTCATGTACACTTGCACAAAAATATTATTGAACCTTGATGTTATCTCAGTGTTGGCATGCATAAATTGGGTAAATTTATGATTGAATGTGTATTTTGGTGTTGTACCAAATCCAGGCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATAGTAAGTCAGTCTTTGCTTTTCTTACCGCTTGTTTGAATTGTTGTTGTATAGCCTTTCATAAGGTATAGTATTGTATTCAGTGGCGGATCTAGAATTTTTATAACACGGGTGCACACTACTGAAACAAATTGAGTAGACGGAATGTATTTAGTGGGAATCGATGCTTGTTTCTTTGGGCAAATTAATATTAGATCAATTCTAGAAAGTACAACAATAGCATATCACTTGAGATCGATCCTACCAAGTAGGGTCCGAGGAAGGTAGAGTCTACACAGGCCTTACACTACCTCGTTGAATTGGAGGTAAACTCGTAGAGGTTGAGGTAGAGGGACTGTTTCTGAAGGACTTCGGCTCAAGTACATTAAAACTATGTACACAAATACCTAAGTTGGCCTAAACTAGACTATAAATATGTCCATACATTCGCCCTTAATTGTATTGTGTTGTTGATGAATACAACCTTCCAATGGCCCCCAAAACCTAGCTCAAGTGGCAAAAGGTGGAGGATTTGTGACTTAAGTCGCATGTTCAAGCCCTACACCACGCAAGGCGGAGCATGGTATTTAAGTGGAGAAGGGTAGAGGAGCGGACTCATTATACACCGAGTTTAGAAGACTATGATTGGTCCAAAGGGCGGGTCACATACAGATTTCTCGGTTATGAGGAAAAAAGAATACAACCTTCAGATATAGTTGGAGTTGTTGTAAGAAATATTGGTTAAAGATAGTTAAATAATAAACACAAGAAAAGTGAGAAAAATTATAAGTTAAACATGAGATAACACCAAATATTATTGTTACATAAATGGGATTTTTTGTTATTGGATAACACTGGACTTAACGTTTATGATACTATAAAATTTATATAATAATCAAAACAAATATTGCGCTTGAAATAACAATATGATATAACAAGTATGTTAACAATCATCCAAACAAGCGTTTAGTTTGGAATGTATGCATTCTTGAATCCAATAGTGCATTATCAATGTTGTGTAGGACTTGTTACTAACCATTGTTGAGATTATATAGGAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</genome_strand>
        <mrna_strand>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG..........................................................................................................................................................................................................................................................GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAG-CATAGTAAGCTTGAAAGTG-AAAGTAGCTCAGATGAATG-AACTATTA-TTGAGAT-ACTGCCCTTTT-GGGTTATATTTTGATAA-TAGTGCATCTGGTGACTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341941" ref_strand="+" ref_description="SGN-U341941        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | bHLH family protein, contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain | chr1:28001837-28002482 REVERSE | Aliases: F1M20.18, F1M20_18(evalue: 4e-09, score=58.9) genbank/nr: gi|15221264|ref|NP_177590.1| bHLH protein family [Arabidopsis thaliana] gi|25406349|pir||A96774 probable DNA-binding protein F1M20.18 [imported] - Arabidopsis thaliana gi|12324788|gb|AAG52350.1| putative DNA-binding protein; 54988-54618 [Arabidopsis thaliana] gi|21593858|gb|AAM65825.1| putative DNA-binding protein [Arabidopsis thaliana] gi|27764980|gb|AAO23611.1| At1g74500 [Arabidopsis thaliana](evalue: 3e-07, score=58.9)">
      <seq>ttcacctccaacacttgttccttagtgtttttttttccttctaatcttcttcatatggttcccttctctctttgtccataacttgtctctcaaatagttatcatcctcttctctttttaaactccccacaacacacacacacacattcattcaaacaacatattctatctattgacaccttaattaacacaaattcttgccttcttaacacagtataatgtcaaatcgaagaacacgcggttcgagacaatcatcaggagcttctagaataagtgatgatcaaattgctgatctcgtatcaaagttacaattacttatccctgaaagccggagcactaggagttccgataaggtagtatttttcagtttaagttatatataccgacagtttgaattccttagttatatataagcatgttgaattgtacttgttgtggtacattcacacattttgacaatgttatttggttacattttgtttgttctcttcttttacttgctataaactatatatgttgtgtttgtaaaaatgaattgaattatatttttccttgaagccattcatatttttttgtggccttcattatctttttagggataagtttaatttgaaagtcatattctcatgcccactaggccatattgcaagctccctcatttaatatttttgtgtgcttaagcatgtggtgtaggactctttgtcacttcataacatttcttggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0101P13-g3fL3/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0101P13.1" temp_strand="-" temp_description="C04SLm0101P13.1  CU468639.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0101P13 sequenced_by:sanger upload_account_name:uk">
        <position start="85721" stop="84397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85421" g_stop="84697" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0101P13.1" gen_strand="-" ref_id="SGN-U341941" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0101P13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85421" e_stop="84697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTGTGTTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</genome_strand>
        <mrna_strand>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTTGTGTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="990" PGL_stop="444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="990" e_stop="926"/>
            <exon e_start="842" e_stop="444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="990" e_stop="926" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.998">
            <gDNA_intron_boundary i_start="925" i_stop="843" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="842" e_stop="444" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="990" stop="926"/>
              <exon start="842" stop="444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328034" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTAACAAAAATAACAGAAGCCGCCATGATTGCCAAGCTTGGGATTGATGTCTACATAACTAAG : GCAGGAACAGACCATTCAGTGAAAGCCCTTAGTGGATTCTTGAAGGGTGGCATACCTGATGACTGGCTCGGAACAGCCATCCGTTACATGAGCTGAGCTAGATCATAGGTTGCTCGTGCTGAATACGAGGGTTTAAATCATTTGAAAAAGACACATTCCACTAACAGCAAGTTTTCGTTTTATGACGTGCAGTCCCCTCCCTTGTGGTCTCTCTATTCATCCTTTTTCCTGTTCATTTCTCAGATTTTCTGAACTGTACTATTAATTTGTTGATTAATAGTAGTTGTTTTGATTTAAGGAAGCGAAATTTTGACTTGATTAATTGTGTTGTAATGTCATATTGATCGAATTGACACTTCTATTAATGCATCTCATGTGTTGCCTGATGGAAACCATCAT</gDNA_template>
            <first_frame> W  *  Q  K  *  Q  K  P  P  *  L  P  S  L  G  L  M  S  T  *  L  R :   Q  E  Q  T  I  Q  *  K  P  L  V  D  S  *  R  V  A  Y  L  M  T  G  S  E  Q  P  S  V  T  *  A  E  L  D  H  R  L  L  V  L  N  T  R  V  *  I  I  *  K  R  H  I  P  L  T  A  S  F  R  F  M  T  C  S  P  L  P  C  G  L  S  I  H  P  F  S  C  S  F  L  R  F  S  E  L  Y  Y  *  F  V  D  *  *  *  L  F  *  F  K  E  A  K  F  *  L  D  *  L  C  C  N  V  I  L  I  E  L  T  L  L  L  M  H  L  M  C  C  L  M  E  T  I   </first_frame>
            <second_frame>  G  N  K  N  N  R  S  R  H  D  C  Q  A  W  D  *  C  L  H  N  *   : G  R  N  R  P  F  S  E  S  P  *  W  I  L  E  G  W  H  T  *  *  L  A  R  N  S  H  P  L  H  E  L  S  *  I  I  G  C  S  C  *  I  R  G  F  K  S  F  E  K  D  T  F  H  *  Q  Q  V  F  V  L  *  R  A  V  P  S  L  V  V  S  L  F  I  L  F  P  V  H  F  S  D  F  L  N  C  T  I  N  L  L  I  N  S  S  C  F  D  L  R  K  R  N  F  D  L  I  N  C  V  V  M  S  Y  *  S  N  *  H  F  Y  *  C  I  S  C  V  A  *  W  K  P  S  </second_frame>
            <third_frame>   V  T  K  I  T  E  A  A  M  I  A  K  L  G  I  D  V  Y  I  T  K  :  A  G  T  D  H  S  V  K  A  L  S  G  F  L  K  G  G  I  P  D  D  W  L  G  T  A  I  R  Y  M  S  *  A  R  S  *  V  A  R  A  E  Y  E  G  L  N  H  L  K  K  T  H  S  T  N  S  K  F  S  F  Y  D  V  Q  S  P  P  L  W  S  L  Y  S  S  F  F  L  F  I  S  Q  I  F  *  T  V  L  L  I  C  *  L  I  V  V  V  L  I  *  G  S  E  I  L  T  *  L  I  V  L  *  C  H  I  D  R  I  D  T  S  I  N  A  S  H  V  L  P  D  G  N  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0101P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7737" PGL_stop="10257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7737" e_stop="9202"/>
            <exon e_start="9547" e_stop="9574"/>
            <exon e_start="9760" e_stop="9771"/>
            <exon e_start="9916" e_stop="9949"/>
            <exon e_start="10231" e_stop="10257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.968" e_score="0.996"/>
          <exon-intron don_prob="0.635" acc_prob="0.000" e_score="0.500"/>
          <exon-intron don_prob="1.000" acc_prob="0.080" e_score="0.583"/>
          <exon-intron don_prob="0.552" acc_prob="0.000" e_score="0.618"/>
          <exon-only e_score="0.630"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="7737" e_stop="9202" e_length="1466"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="9203" i_stop="9546" i_length="344"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="9547" e_stop="9574" e_length="28"/>
          </exon>
          <intron i_serial="2" don_prob="0.635" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9575" i_stop="9759" i_length="185"/>
          </intron>
          <exon e_serial="3" e_score="0.583">
            <gDNA_exon_boundary e_start="9760" e_stop="9771" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.080">
            <gDNA_intron_boundary i_start="9772" i_stop="9915" i_length="144"/>
          </intron>
          <exon e_serial="4" e_score="0.618">
            <gDNA_exon_boundary e_start="9916" e_stop="9949" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.552" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9950" i_stop="10230" i_length="281"/>
          </intron>
          <exon e_serial="5" e_score="0.630">
            <gDNA_exon_boundary e_start="10231" e_stop="10257" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7737" stop="9202"/>
              <exon start="9547" stop="9574"/>
              <exon start="9760" stop="9771"/>
              <exon start="9916" stop="9949"/>
              <exon start="10231" stop="10257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315799" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATTAACTGAAAGCGAGCCATTTGGATATAGTAATCAAACTAACATTTAATTGAGGAAATGATACAAGTAGTTTTTACAGTACCTACACAATATGTAGAAGCTAGAAAAGAGATCCAATTGCAACCTGCTTCAACAAACTTATTACATATTGTAAAGCATCTTCACATGATTTCTTAACTACTATGGAACTCGATACATGATTAAAACCATAATTTCTACAAAATACAAAGTAAAGACTGCGTCTTGAACCCACTGACCTTAAGACTGTTTCAACTTTGAACAACACATACAACATGAGGAACCTTCTCATTGTCAAAAGGCAAGTAGACATACTCGCGAGCAAACTCCTCTGCGATATCCAATGCTAGCTCCCCGTGCAACGCCTTGCAATACATATACAACACGACACTCGCTGCAATGTTCTGAAGCATCAGGAGAGTAGCGAAGCCCGAACTCACCACCATCTGCAATATCACCCCAAAGCTTGTCCACCCACCACTAGCAGCTCCTACACTCACCAGAAAACTTGAACAACCACCCACTAACAATCCAATCAGAACCCCGAAAAATAGCAACACTGACAACGCCACCCATCTCATCCCCTTCACCAAATAAGCACTTCTTCGCAATGCTTGGTAACCCCATTTCGATTCCACAACTACAATCACATAAGCTAATGACCAATTAACCTGCAACCACATAACAACCAATACAACAAGTACACCTACAAAAACACCCAAACCCATTAAGTAATTCGAATCGTAACCCACTTCAAACCCAAGAAACTGCACACCCTGCACCACAATCACCGCCAATAGCCCAAACAGTAAAACAATCAAAGCATAAATGACACGCGAAACGATAAGGGTGGCAATTAGAGGCAAGAAAGAGTACAAAACCGACTTCATAGACGAAACAAGCTTGACGGGTCTTCCATAAAATCCATGGAAAGTACTGTAGCTGATTGTAGCCAACGCCAAAAGAGACAGAACAGAAGCTAAAAGGGTGTACACAAGGAGAAGAAGAAGGGACTGGGAATCCGGTTGGGTCAGATTCCGAATCGGGTCATATGGGTCAGTGGAGGTGAAGAAGGAGAAGGAAAGGTGAGATGGGTGTCGGTTAAAAAGGTTGGAATCGGAGTGAAAGAGAGCGGTTTGAAGAGTAGGATAGATGATGAGAGAAAAAGAGAGAGGCAAAAGGAAGGAAACTGAAAGGGCTAAGAAATGGCGTGAGTGAGCATTGATTATCCGCTTTGATTGGGAAAGTACTCCCCAGAGATTAAGGGTGTGTGGATAACCAGACATTGAAGATGATGATGAAGAAACCAAAGAGATGATGAGAAAAACTAGTCTCTGTTTTTGTGATTTGGGGCTTTTTTCCCTTTTCTTGAATTTTTCAGGATTGATGTGAAGGAGGAGACAAGTGGCAATAAGGTTCAATATTTTACTCAATTCACTAGAAAAT : AGTGTGTGCAGCCGTACATATGATTCAA : CAGTTTACTATG : TTTGTCATTCACCTAGTTCTAAAAGAGAAGAAAA : ACAACTACCTCCTAGTTTTTTTCTCTC</gDNA_template>
            <first_frame> A  L  T  E  S  E  P  F  G  Y  S  N  Q  T  N  I  *  L  R  K  *  Y  K  *  F  L  Q  Y  L  H  N  M  *  K  L  E  K  R  S  N  C  N  L  L  Q  Q  T  Y  Y  I  L  *  S  I  F  T  *  F  L  N  Y  Y  G  T  R  Y  M  I  K  T  I  I  S  T  K  Y  K  V  K  T  A  S  *  T  H  *  P  *  D  C  F  N  F  E  Q  H  I  Q  H  E  E  P  S  H  C  Q  K  A  S  R  H  T  R  E  Q  T  P  L  R  Y  P  M  L  A  P  R  A  T  P  C  N  T  Y  T  T  R  H  S  L  Q  C  S  E  A  S  G  E  *  R  S  P  N  S  P  P  S  A  I  S  P  Q  S  L  S  T  H  H  *  Q  L  L  H  S  P  E  N  L  N  N  H  P  L  T  I  Q  S  E  P  R  K  I  A  T  L  T  T  P  P  I  S  S  P  S  P  N  K  H  F  F  A  M  L  G  N  P  I  S  I  P  Q  L  Q  S  H  K  L  M  T  N  *  P  A  T  T  *  Q  P  I  Q  Q  V  H  L  Q  K  H  P  N  P  L  S  N  S  N  R  N  P  L  Q  T  Q  E  T  A  H  P  A  P  Q  S  P  P  I  A  Q  T  V  K  Q  S  K  H  K  *  H  A  K  R  *  G  W  Q  L  E  A  R  K  S  T  K  P  T  S  *  T  K  Q  A  *  R  V  F  H  K  I  H  G  K  Y  C  S  *  L  *  P  T  P  K  E  T  E  Q  K  L  K  G  C  T  Q  G  E  E  E  G  T  G  N  P  V  G  S  D  S  E  S  G  H  M  G  Q  W  R  *  R  R  R  R  K  G  E  M  G  V  G  *  K  G  W  N  R  S  E  R  E  R  F  E  E  *  D  R  *  *  E  K  K  R  E  A  K  G  R  K  L  K  G  L  R  N  G  V  S  E  H  *  L  S  A  L  I  G  K  V  L  P  R  D  *  G  C  V  D  N  Q  T  L  K  M  M  M  K  K  P  K  R  *  *  E  K  L  V  S  V  F  V  I  W  G  F  F  P  F  S  *  I  F  Q  D  *  C  E  G  G  D  K  W  Q  *  G  S  I  F  Y  S  I  H  *  K  I :   V  C  A  A  V  H  M  I  Q  :  Q  F  T  M  :  F  V  I  H  L  V  L  K  E  K  K   : N  N  Y  L  L  V  F  F  S  </first_frame>
            <second_frame>  H  *  L  K  A  S  H  L  D  I  V  I  K  L  T  F  N  *  G  N  D  T  S  S  F  Y  S  T  Y  T  I  C  R  S  *  K  R  D  P  I  A  T  C  F  N  K  L  I  T  Y  C  K  A  S  S  H  D  F  L  T  T  M  E  L  D  T  *  L  K  P  *  F  L  Q  N  T  K  *  R  L  R  L  E  P  T  D  L  K  T  V  S  T  L  N  N  T  Y  N  M  R  N  L  L  I  V  K  R  Q  V  D  I  L  A  S  K  L  L  C  D  I  Q  C  *  L  P  V  Q  R  L  A  I  H  I  Q  H  D  T  R  C  N  V  L  K  H  Q  E  S  S  E  A  R  T  H  H  H  L  Q  Y  H  P  K  A  C  P  P  T  T  S  S  S  Y  T  H  Q  K  T  *  T  T  T  H  *  Q  S  N  Q  N  P  E  K  *  Q  H  *  Q  R  H  P  S  H  P  L  H  Q  I  S  T  S  S  Q  C  L  V  T  P  F  R  F  H  N  Y  N  H  I  S  *  *  P  I  N  L  Q  P  H  N  N  Q  Y  N  K  Y  T  Y  K  N  T  Q  T  H  *  V  I  R  I  V  T  H  F  K  P  K  K  L  H  T  L  H  H  N  H  R  Q  *  P  K  Q  *  N  N  Q  S  I  N  D  T  R  N  D  K  G  G  N  *  R  Q  E  R  V  Q  N  R  L  H  R  R  N  K  L  D  G  S  S  I  K  S  M  E  S  T  V  A  D  C  S  Q  R  Q  K  R  Q  N  R  S  *  K  G  V  H  K  E  K  K  K  G  L  G  I  R  L  G  Q  I  P  N  R  V  I  W  V  S  G  G  E  E  G  E  G  K  V  R  W  V  S  V  K  K  V  G  I  G  V  K  E  S  G  L  K  S  R  I  D  D  E  R  K  R  E  R  Q  K  E  G  N  *  K  G  *  E  M  A  *  V  S  I  D  Y  P  L  *  L  G  K  Y  S  P  E  I  K  G  V  W  I  T  R  H  *  R  *  *  *  R  N  Q  R  D  D  E  K  N  *  S  L  F  L  *  F  G  A  F  F  P  F  L  E  F  F  R  I  D  V  K  E  E  T  S  G  N  K  V  Q  Y  F  T  Q  F  T  R  K   : *  C  V  Q  P  Y  I  *  F  N :   S  L  L  C :   L  S  F  T  *  F  *  K  R  R  K  :  T  T  T  S  *  F  F  S  L </second_frame>
            <third_frame>   I  N  *  K  R  A  I  W  I  *  *  S  N  *  H  L  I  E  E  M  I  Q  V  V  F  T  V  P  T  Q  Y  V  E  A  R  K  E  I  Q  L  Q  P  A  S  T  N  L  L  H  I  V  K  H  L  H  M  I  S  *  L  L  W  N  S  I  H  D  *  N  H  N  F  Y  K  I  Q  S  K  D  C  V  L  N  P  L  T  L  R  L  F  Q  L  *  T  T  H  T  T  *  G  T  F  S  L  S  K  G  K  *  T  Y  S  R  A  N  S  S  A  I  S  N  A  S  S  P  C  N  A  L  Q  Y  I  Y  N  T  T  L  A  A  M  F  *  S  I  R  R  V  A  K  P  E  L  T  T  I  C  N  I  T  P  K  L  V  H  P  P  L  A  A  P  T  L  T  R  K  L  E  Q  P  P  T  N  N  P  I  R  T  P  K  N  S  N  T  D  N  A  T  H  L  I  P  F  T  K  *  A  L  L  R  N  A  W  *  P  H  F  D  S  T  T  T  I  T  *  A  N  D  Q  L  T  C  N  H  I  T  T  N  T  T  S  T  P  T  K  T  P  K  P  I  K  *  F  E  S  *  P  T  S  N  P  R  N  C  T  P  C  T  T  I  T  A  N  S  P  N  S  K  T  I  K  A  *  M  T  R  E  T  I  R  V  A  I  R  G  K  K  E  Y  K  T  D  F  I  D  E  T  S  L  T  G  L  P  *  N  P  W  K  V  L  *  L  I  V  A  N  A  K  R  D  R  T  E  A  K  R  V  Y  T  R  R  R  R  R  D  W  E  S  G  W  V  R  F  R  I  G  S  Y  G  S  V  E  V  K  K  E  K  E  R  *  D  G  C  R  L  K  R  L  E  S  E  *  K  R  A  V  *  R  V  G  *  M  M  R  E  K  E  R  G  K  R  K  E  T  E  R  A  K  K  W  R  E  *  A  L  I  I  R  F  D  W  E  S  T  P  Q  R  L  R  V  C  G  *  P  D  I  E  D  D  D  E  E  T  K  E  M  M  R  K  T  S  L  C  F  C  D  L  G  L  F  S  L  F  L  N  F  S  G  L  M  *  R  R  R  Q  V  A  I  R  F  N  I  L  L  N  S  L  E  N  :  S  V  C  S  R  T  Y  D  S   : T  V  Y  Y   : V  C  H  S  P  S  S  K  R  E  E  K :   Q  L  P  P  S  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8740" stop="8949"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KGVHKEKKKGLGIRLGQIPNRVIWVSGGEEGEGKVRWVSVKKVGIGVKESGLKSRIDDERKRERQKEGN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10684" PGL_stop="11512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10684" e_stop="11512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10684" e_stop="11512" e_length="829"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10684" stop="11512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCAATGAACTTTTTCCTCTGTTAAACATCCTTTTTTTTCATTGAATTGAAGAAGAACTTGTGATTTTCATCTGATCCTGCCTTTGCTTCCTTGTAAATTTAGTCAATAGCTATGGAATTCTTATCTATTTTTGTGGAAAAACTAACTGATTGCTTGATCCAGCCAGTTGCGCGGCAGATTGGTTATTTCTACTACTACAAGAGAAACATGAGATGTATGGATAAAGAATGTGAGAAGCTGAAGAATATCAGAATGACAATGCAGCGAAAAGCGGAAGATGCCAGGAGAAACTTACAAGACATTTCACCTAATGGCAAGGTTTGGTTAACTAGTGTTGATACAACTACTGCAGATGTGGAAGGCGTGATGCGAGGTGTAGCTGAGGTTGAAAGGGGTTGCTTCTATGGTGTGTGCCCGAATTTGAAGTCACGTTACTCGATGAGTAGGAGAGCTAAGAAAATTACACTGGAGTTGATTGAACTTCAAAATGAAAGCAATAAGCCTGATGTTTTGTCATTTGATCATCCAGTCGAAAGTGAACCTGAGGCTATGTGTAGTAACAATGTTGAGGAGTTTGAGTCCAGAAAATTGAAGGAGGATGAGGTCATGGCAGCTTTGAGAGATGACGAGGTTGCTATTATTGGGATATGTGGTATGGGTGGAGTTGGTAAGACAACACTGACTGAGAAAATCAGACAAATGGCGAAAAAAGAAAGGTTGTTTAAAGATGTTGTCATGGTAATTGTCAGTCAACAAATAGACTTTAAAAGAATTCAGGATGAGATTGCAGGAGGAGTTGGGCTGACATTAGAAGGGGATGATTTGTG</gDNA_template>
            <first_frame> L  Q  *  T  F  S  S  V  K  H  P  F  F  S  L  N  *  R  R  T  C  D  F  H  L  I  L  P  L  L  P  C  K  F  S  Q  *  L  W  N  S  Y  L  F  L  W  K  N  *  L  I  A  *  S  S  Q  L  R  G  R  L  V  I  S  T  T  T  R  E  T  *  D  V  W  I  K  N  V  R  S  *  R  I  S  E  *  Q  C  S  E  K  R  K  M  P  G  E  T  Y  K  T  F  H  L  M  A  R  F  G  *  L  V  L  I  Q  L  L  Q  M  W  K  A  *  C  E  V  *  L  R  L  K  G  V  A  S  M  V  C  A  R  I  *  S  H  V  T  R  *  V  G  E  L  R  K  L  H  W  S  *  L  N  F  K  M  K  A  I  S  L  M  F  C  H  L  I  I  Q  S  K  V  N  L  R  L  C  V  V  T  M  L  R  S  L  S  P  E  N  *  R  R  M  R  S  W  Q  L  *  E  M  T  R  L  L  L  L  G  Y  V  V  W  V  E  L  V  R  Q  H  *  L  R  K  S  D  K  W  R  K  K  K  G  C  L  K  M  L  S  W  *  L  S  V  N  K  *  T  L  K  E  F  R  M  R  L  Q  E  E  L  G  *  H  *  K  G  M  I  C  </first_frame>
            <second_frame>  C  N  E  L  F  P  L  L  N  I  L  F  F  H  *  I  E  E  E  L  V  I  F  I  *  S  C  L  C  F  L  V  N  L  V  N  S  Y  G  I  L  I  Y  F  C  G  K  T  N  *  L  L  D  P  A  S  C  A  A  D  W  L  F  L  L  L  Q  E  K  H  E  M  Y  G  *  R  M  *  E  A  E  E  Y  Q  N  D  N  A  A  K  S  G  R  C  Q  E  K  L  T  R  H  F  T  *  W  Q  G  L  V  N  *  C  *  Y  N  Y  C  R  C  G  R  R  D  A  R  C  S  *  G  *  K  G  L  L  L  W  C  V  P  E  F  E  V  T  L  L  D  E  *  E  S  *  E  N  Y  T  G  V  D  *  T  S  K  *  K  Q  *  A  *  C  F  V  I  *  S  S  S  R  K  *  T  *  G  Y  V  *  *  Q  C  *  G  V  *  V  Q  K  I  E  G  G  *  G  H  G  S  F  E  R  *  R  G  C  Y  Y  W  D  M  W  Y  G  W  S  W  *  D  N  T  D  *  E  N  Q  T  N  G  E  K  R  K  V  V  *  R  C  C  H  G  N  C  Q  S  T  N  R  L  *  K  N  S  G  *  D  C  R  R  S  W  A  D  I  R  R  G  *  F  V </second_frame>
            <third_frame>   A  M  N  F  F  L  C  *  T  S  F  F  F  I  E  L  K  K  N  L  *  F  S  S  D  P  A  F  A  S  L  *  I  *  S  I  A  M  E  F  L  S  I  F  V  E  K  L  T  D  C  L  I  Q  P  V  A  R  Q  I  G  Y  F  Y  Y  Y  K  R  N  M  R  C  M  D  K  E  C  E  K  L  K  N  I  R  M  T  M  Q  R  K  A  E  D  A  R  R  N  L  Q  D  I  S  P  N  G  K  V  W  L  T  S  V  D  T  T  T  A  D  V  E  G  V  M  R  G  V  A  E  V  E  R  G  C  F  Y  G  V  C  P  N  L  K  S  R  Y  S  M  S  R  R  A  K  K  I  T  L  E  L  I  E  L  Q  N  E  S  N  K  P  D  V  L  S  F  D  H  P  V  E  S  E  P  E  A  M  C  S  N  N  V  E  E  F  E  S  R  K  L  K  E  D  E  V  M  A  A  L  R  D  D  E  V  A  I  I  G  I  C  G  M  G  G  V  G  K  T  T  L  T  E  K  I  R  Q  M  A  K  K  E  R  L  F  K  D  V  V  M  V  I  V  S  Q  Q  I  D  F  K  R  I  Q  D  E  I  A  G  G  V  G  L  T  L  E  G  D  D  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10788" stop="11510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIAMEFLSIFVEKLTDCLIQPVARQIGYFYYYKRNMRCMDKECEKLKNIRMTMQRKAEDARRNLQDISPNGKVWLTSVDTTTADVEGVMRGVAEVERGCFYGVCPNLKSRYSMSRRAKKITLELIELQNESNKPDVLSFDHPVESEPEAMCSNNVEEFESRKLKEDEVMAALRDDEVAIIGICGMGGVGKTTLTEKIRQMAKKERLFKDVVMVIVSQQIDFKRIQDEIAGGVGLTLEGDDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13395" PGL_stop="16762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13395" e_stop="13541"/>
            <exon e_start="13694" e_stop="14197"/>
            <exon e_start="14422" e_stop="14919"/>
            <exon e_start="15600" e_stop="16100"/>
            <exon e_start="16288" e_stop="16762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.779" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.678" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13395" e_stop="13541" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13542" i_stop="13693" i_length="152"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13694" e_stop="14197" e_length="504"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.779">
            <gDNA_intron_boundary i_start="14198" i_stop="14421" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14422" e_stop="14919" e_length="498"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.678">
            <gDNA_intron_boundary i_start="14920" i_stop="15599" i_length="680"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15600" e_stop="16100" e_length="501"/>
          </exon>
          <intron i_serial="4" don_prob="0.868" acc_prob="0.999">
            <gDNA_intron_boundary i_start="16101" i_stop="16287" i_length="187"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16288" e_stop="16762" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13395" stop="13541"/>
              <exon start="13694" stop="14188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14168" stop="14197"/>
              <exon start="14422" stop="14919"/>
              <exon start="15600" stop="16100"/>
              <exon start="16288" stop="16762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTCACTTTTGCAATGACACTGTTGAGGGCATTGAGTTCCCTCGGTTGCGGAAAATGCACTTCAGTAGCTTACCAGAGTTCCAAAATTTCTGGCATACAGCCAACAACTCTATCACTGACTCAAATCCTCTTTTTGATGAAAAG : GTTTCTTGTCCCAACCTGGAAGATCTGTATATCGATAGGGCTGACAGCATAACTGCTCTCTGGTCTCACCAACTTCCAACTACCTACTTCAGTAAACTTGTAAAATTCGAAGTAGATGGTTGCGGAAAATTGACAAACTTGATGTCTCCATCAGTGGCCAGAGGTCTCCTGAATCTCCGGAAACTAAAGATAGAAAATTGTGAGTCAATGGAAGAAGTGATCACAGAAGAGGAACAACAAGGAGAAGAAATCATGAGTAATGAGCCTTTATTCCCCCTGTTGGAACAGCTGAACCTTTACAATCTGCCAAAGCTGGGGCACTTCTTTCTAGCGAAGCGTGGTCTTGAATTTCCATTTCTCAGGGATGTGTGCATTCATAACTGCTCTGAAATGAAGGCGTTTGTCCAACAGGGAATATATGTGAGTACACCGAGTCTCGAAAGTGTAAACAATGATGATGAGGTGAAAGTGGTTGATCTCAATAAAGCGATGTTCAATTCTAAG : GTTTCGTGTCCCAGACTGGAAAAGCTACAACTCTTTTGTGCTCATAGTATAACTGCTCTATGCTCTCATCAACTTCCAACAGGCTACTTTAGCAAACTTGAAGCGTTGCATGTATCGTTTTGTGGAAATTTGAGAAACTTGATGTCTTCATCAGTGGCCAGGGGTGTTTTGAATCTCCAAATTCTACATATAGGATATTGCGAGTTGATGGAAGAAGTGATCACAAAAGAGGAACAAGGAGAAGAAATTATGACAAATGAGCCCTTATTTCCCCTGTTGGAAGAGTTGAGGCTTCAAAGCCTGCCAAAGCTGGGGCATTTCTTTCTCGCTATGCACGCTCTTGAATTTCCATTTCTCAGAGAAGTGTCGATTCATGAATGCCCTGATATAAAGACGTTTGTCCAACAGGGATCTGTGAGTACACCGAGTCTCGGAAGTTTGAACAATGATGATGAGGTGAAAGTAGTTGATCTCAATAAAGTGATGTTCAATTTTAAG : GTTACTTGTCCCAGTCTGGAAGAGCTATGTATCTGGATGGCTCACAACATAACTGCTCTATGCTCTCACCAACTTCCAACTGCCTACTTTAGCAAACTTGAAAGTTTGGATGTATCGACTTGTGGAAAATTGAGAAACTTGATGTCTCCATTACTGGCTAGAGGTGTTTTGAATCTCCGAATACTAAAGATACAAGACTGTCAATCAATGGAAGAAGTCATCACAGAAGAGGAACAAGGAGAAAATATGACTAATGGGCCCTTATTTCCCCGGTTAGAACAGCTGGATCTTTACGATCTGCCAAAGCTGGGGCATTTCTTTCAGACGAAGCATGCTCTTGAATTTCCATTTCTCAGGAAAGTGTTTATTTATAGCTGCCCTTCAATGAAGACGTTTGGCCTCGGTTCTGTGAGCACACCGAGTCTCGAAAGTGTGAACTATGATGATGAGGTGAAAGTAGATGATCTGAATACATGGATACAACAGATGTTCAATTCTAAG : GAAGAAGATGTAAGTGATGACTGTGAATATGAAAAAGACGTTACTGACGGTAATGAATCTGAAGAAGATTTAAGTGATGGCTGTAAATCTGAACAAGATGTAAGTGATGGCAGTGAATCTGAATCTTCAGTCCAGTGAAGGCAGAAGCTAGCATGTTGTCGATGAATCCAAAGCTATGAAGGTAATAAGTTCTCGATGGAATAGTTTAAGTGTGACAAGTGAAGCTCGAAGACCTATATATGCTCGTTATGGAAGCAGAGATGTATACCTGTAACTTTATTAGTAATATCTAGTAATTCCTTGACTGTGAACACAAGTATTATTTTTGATATCACTGTAGGATTCTATAAACTTTAAATTTTGAATCCGACTATATGTTGTTCATTCTTCTTTCATTTATATTTAACAGCTAATATGTTGCTTTATTTTCTCATGTAATCTTGCATTCTGTGTCGTTTTGAAAGATTTAAAAAAA</gDNA_template>
            <first_frame> L  T  H  F  C  N  D  T  V  E  G  I  E  F  P  R  L  R  K  M  H  F  S  S  L  P  E  F  Q  N  F  W  H  T  A  N  N  S  I  T  D  S  N  P  L  F  D  E  K  :  V  S  C  P  N  L  E  D  L  Y  I  D  R  A  D  S  I  T  A  L  W  S  H  Q  L  P  T  T  Y  F  S  K  L  V  K  F  E  V  D  G  C  G  K  L  T  N  L  M  S  P  S  V  A  R  G  L  L  N  L  R  K  L  K  I  E  N  C  E  S  M  E  E  V  I  T  E  E  E  Q  Q  G  E  E  I  M  S  N  E  P  L  F  P  L  L  E  Q  L  N  L  Y  N  L  P  K  L  G  H  F  F  L  A  K  R  G  L  E  F  P  F  L  R  D  V  C  I  H  N  C  S  E  M  K  A  F  V  Q  Q  G  I  Y  V  S  T  P  S  L  E  S  V  N  N  D  D  E  V  K  V  V  D  L  N  K  A  M  F  N  S  K  :  V  S  C  P  R  L  E  K  L  Q  L  F  C  A  H  S  I  T  A  L  C  S  H  Q  L  P  T  G  Y  F  S  K  L  E  A  L  H  V  S  F  C  G  N  L  R  N  L  M  S  S  S  V  A  R  G  V  L  N  L  Q  I  L  H  I  G  Y  C  E  L  M  E  E  V  I  T  K  E  E  Q  G  E  E  I  M  T  N  E  P  L  F  P  L  L  E  E  L  R  L  Q  S  L  P  K  L  G  H  F  F  L  A  M  H  A  L  E  F  P  F  L  R  E  V  S  I  H  E  C  P  D  I  K  T  F  V  Q  Q  G  S  V  S  T  P  S  L  G  S  L  N  N  D  D  E  V  K  V  V  D  L  N  K  V  M  F  N  F  K  :  V  T  C  P  S  L  E  E  L  C  I  W  M  A  H  N  I  T  A  L  C  S  H  Q  L  P  T  A  Y  F  S  K  L  E  S  L  D  V  S  T  C  G  K  L  R  N  L  M  S  P  L  L  A  R  G  V  L  N  L  R  I  L  K  I  Q  D  C  Q  S  M  E  E  V  I  T  E  E  E  Q  G  E  N  M  T  N  G  P  L  F  P  R  L  E  Q  L  D  L  Y  D  L  P  K  L  G  H  F  F  Q  T  K  H  A  L  E  F  P  F  L  R  K  V  F  I  Y  S  C  P  S  M  K  T  F  G  L  G  S  V  S  T  P  S  L  E  S  V  N  Y  D  D  E  V  K  V  D  D  L  N  T  W  I  Q  Q  M  F  N  S  K  :  E  E  D  V  S  D  D  C  E  Y  E  K  D  V  T  D  G  N  E  S  E  E  D  L  S  D  G  C  K  S  E  Q  D  V  S  D  G  S  E  S  E  S  S  V  Q  *  R  Q  K  L  A  C  C  R  *  I  Q  S  Y  E  G  N  K  F  S  M  E  *  F  K  C  D  K  *  S  S  K  T  Y  I  C  S  L  W  K  Q  R  C  I  P  V  T  L  L  V  I  S  S  N  S  L  T  V  N  T  S  I  I  F  D  I  T  V  G  F  Y  K  L  *  I  L  N  P  T  I  C  C  S  F  F  F  H  L  Y  L  T  A  N  M  L  L  Y  F  L  M  *  S  C  I  L  C  R  F  E  R  F  K  K  </first_frame>
            <second_frame>  S  L  T  F  A  M  T  L  L  R  A  L  S  S  L  G  C  G  K  C  T  S  V  A  Y  Q  S  S  K  I  S  G  I  Q  P  T  T  L  S  L  T  Q  I  L  F  L  M  K  R :   F  L  V  P  T  W  K  I  C  I  S  I  G  L  T  A  *  L  L  S  G  L  T  N  F  Q  L  P  T  S  V  N  L  *  N  S  K  *  M  V  A  E  N  *  Q  T  *  C  L  H  Q  W  P  E  V  S  *  I  S  G  N  *  R  *  K  I  V  S  Q  W  K  K  *  S  Q  K  R  N  N  K  E  K  K  S  *  V  M  S  L  Y  S  P  C  W  N  S  *  T  F  T  I  C  Q  S  W  G  T  S  F  *  R  S  V  V  L  N  F  H  F  S  G  M  C  A  F  I  T  A  L  K  *  R  R  L  S  N  R  E  Y  M  *  V  H  R  V  S  K  V  *  T  M  M  M  R  *  K  W  L  I  S  I  K  R  C  S  I  L  R :   F  R  V  P  D  W  K  S  Y  N  S  F  V  L  I  V  *  L  L  Y  A  L  I  N  F  Q  Q  A  T  L  A  N  L  K  R  C  M  Y  R  F  V  E  I  *  E  T  *  C  L  H  Q  W  P  G  V  F  *  I  S  K  F  Y  I  *  D  I  A  S  *  W  K  K  *  S  Q  K  R  N  K  E  K  K  L  *  Q  M  S  P  Y  F  P  C  W  K  S  *  G  F  K  A  C  Q  S  W  G  I  S  F  S  L  C  T  L  L  N  F  H  F  S  E  K  C  R  F  M  N  A  L  I  *  R  R  L  S  N  R  D  L  *  V  H  R  V  S  E  V  *  T  M  M  M  R  *  K  *  L  I  S  I  K  *  C  S  I  L  R :   L  L  V  P  V  W  K  S  Y  V  S  G  W  L  T  T  *  L  L  Y  A  L  T  N  F  Q  L  P  T  L  A  N  L  K  V  W  M  Y  R  L  V  E  N  *  E  T  *  C  L  H  Y  W  L  E  V  F  *  I  S  E  Y  *  R  Y  K  T  V  N  Q  W  K  K  S  S  Q  K  R  N  K  E  K  I  *  L  M  G  P  Y  F  P  G  *  N  S  W  I  F  T  I  C  Q  S  W  G  I  S  F  R  R  S  M  L  L  N  F  H  F  S  G  K  C  L  F  I  A  A  L  Q  *  R  R  L  A  S  V  L  *  A  H  R  V  S  K  V  *  T  M  M  M  R  *  K  *  M  I  *  I  H  G  Y  N  R  C  S  I  L  R :   K  K  M  *  V  M  T  V  N  M  K  K  T  L  L  T  V  M  N  L  K  K  I  *  V  M  A  V  N  L  N  K  M  *  V  M  A  V  N  L  N  L  Q  S  S  E  G  R  S  *  H  V  V  D  E  S  K  A  M  K  V  I  S  S  R  W  N  S  L  S  V  T  S  E  A  R  R  P  I  Y  A  R  Y  G  S  R  D  V  Y  L  *  L  Y  *  *  Y  L  V  I  P  *  L  *  T  Q  V  L  F  L  I  S  L  *  D  S  I  N  F  K  F  *  I  R  L  Y  V  V  H  S  S  F  I  Y  I  *  Q  L  I  C  C  F  I  F  S  C  N  L  A  F  C  V  V  L  K  D  L  K  K </second_frame>
            <third_frame>   H  S  L  L  Q  *  H  C  *  G  H  *  V  P  S  V  A  E  N  A  L  Q  *  L  T  R  V  P  K  F  L  A  Y  S  Q  Q  L  Y  H  *  L  K  S  S  F  *  *  K   : G  F  L  S  Q  P  G  R  S  V  Y  R  *  G  *  Q  H  N  C  S  L  V  S  P  T  S  N  Y  L  L  Q  *  T  C  K  I  R  S  R  W  L  R  K  I  D  K  L  D  V  S  I  S  G  Q  R  S  P  E  S  P  E  T  K  D  R  K  L  *  V  N  G  R  S  D  H  R  R  G  T  T  R  R  R  N  H  E  *  *  A  F  I  P  P  V  G  T  A  E  P  L  Q  S  A  K  A  G  A  L  L  S  S  E  A  W  S  *  I  S  I  S  Q  G  C  V  H  S  *  L  L  *  N  E  G  V  C  P  T  G  N  I  C  E  Y  T  E  S  R  K  C  K  Q  *  *  *  G  E  S  G  *  S  Q  *  S  D  V  Q  F  *   : G  F  V  S  Q  T  G  K  A  T  T  L  L  C  S  *  Y  N  C  S  M  L  S  S  T  S  N  R  L  L  *  Q  T  *  S  V  A  C  I  V  L  W  K  F  E  K  L  D  V  F  I  S  G  Q  G  C  F  E  S  P  N  S  T  Y  R  I  L  R  V  D  G  R  S  D  H  K  R  G  T  R  R  R  N  Y  D  K  *  A  L  I  S  P  V  G  R  V  E  A  S  K  P  A  K  A  G  A  F  L  S  R  Y  A  R  S  *  I  S  I  S  Q  R  S  V  D  S  *  M  P  *  Y  K  D  V  C  P  T  G  I  C  E  Y  T  E  S  R  K  F  E  Q  *  *  *  G  E  S  S  *  S  Q  *  S  D  V  Q  F  *   : G  Y  L  S  Q  S  G  R  A  M  Y  L  D  G  S  Q  H  N  C  S  M  L  S  P  T  S  N  C  L  L  *  Q  T  *  K  F  G  C  I  D  L  W  K  I  E  K  L  D  V  S  I  T  G  *  R  C  F  E  S  P  N  T  K  D  T  R  L  S  I  N  G  R  S  H  H  R  R  G  T  R  R  K  Y  D  *  W  A  L  I  S  P  V  R  T  A  G  S  L  R  S  A  K  A  G  A  F  L  S  D  E  A  C  S  *  I  S  I  S  Q  E  S  V  Y  L  *  L  P  F  N  E  D  V  W  P  R  F  C  E  H  T  E  S  R  K  C  E  L  *  *  *  G  E  S  R  *  S  E  Y  M  D  T  T  D  V  Q  F  *   : G  R  R  C  K  *  *  L  *  I  *  K  R  R  Y  *  R  *  *  I  *  R  R  F  K  *  W  L  *  I  *  T  R  C  K  *  W  Q  *  I  *  I  F  S  P  V  K  A  E  A  S  M  L  S  M  N  P  K  L  *  R  *  *  V  L  D  G  I  V  *  V  *  Q  V  K  L  E  D  L  Y  M  L  V  M  E  A  E  M  Y  T  C  N  F  I  S  N  I  *  *  F  L  D  C  E  H  K  Y  Y  F  *  Y  H  C  R  I  L  *  T  L  N  F  E  S  D  Y  M  L  F  I  L  L  S  F  I  F  N  S  *  Y  V  A  L  F  S  H  V  I  L  H  S  V  S  F  *  K  I  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13395" stop="13541"/>
                    <exon start="13694" stop="14197"/>
                    <exon start="14422" stop="14919"/>
                    <exon start="15600" stop="16100"/>
                    <exon start="16288" stop="16425"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1785</number_coding_nucleotides>
                  <number_encoded_amino_acids>595</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTHFCNDTVEGIEFPRLRKMHFSSLPEFQNFWHTANNSITDSNPLFDEKVSCPNLEDLYIDRADSITALWSHQLPTTYFSKLVKFEVDGCGKLTNLMSPSVARGLLNLRKLKIENCESMEEVITEEEQQGEEIMSNEPLFPLLEQLNLYNLPKLGHFFLAKRGLEFPFLRDVCIHNCSEMKAFVQQGIYVSTPSLESVNNDDEVKVVDLNKAMFNSKVSCPRLEKLQLFCAHSITALCSHQLPTGYFSKLEALHVSFCGNLRNLMSSSVARGVLNLQILHIGYCELMEEVITKEEQGEEIMTNEPLFPLLEELRLQSLPKLGHFFLAMHALEFPFLREVSIHECPDIKTFVQQGSVSTPSLGSLNNDDEVKVVDLNKVMFNFKVTCPSLEELCIWMAHNITALCSHQLPTAYFSKLESLDVSTCGKLRNLMSPLLARGVLNLRILKIQDCQSMEEVITEEEQGENMTNGPLFPRLEQLDLYDLPKLGHFFQTKHALEFPFLRKVFIYSCPSMKTFGLGSVSTPSLESVNYDDEVKVDDLNTWIQQMFNSKEEDVSDDCEYEKDVTDGNESEEDLSDGCKSEQDVSDGSESESSVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19527" PGL_stop="20218"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19527" e_stop="20218"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="19527" e_stop="20218" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19527" stop="20218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGCCTTTTCCAGTATCCATTCAGAGGTTGTCGAATCTGAGGACGTTGTGTCTGAGTAATTTAAGGTTGGAGGACATATCCATTATTGGTCAACTTGTCACTTTAGAGATTCTTAGCATAAGAGATTCTCAGTTAGAGGAGCTGCCCAAGGAGATAGGTAAATTGACTAATCTAATCATGTTAGAGTTGCGGAATGAGAAAAAACCACTGGAAATGATTTCACCAGGGGTCTTATCAAGACTAGTTCGATTGGAGGAACTACATATAATGAATGTAAGAAATTGTAGTTACTCCACCTTGAAGGAACTAGAATCCTTATCGAGATTGACTGCACTGACATTAAGTGAATGTTCCGGAGATGTGATCTACAGTAACATGGGCCTTACCTCCAAGTTGACACAGTTTGCAATTACAGTGGGTAAAGCTTACAGAGCGACTCCAAGCATGGATGATTACGACAAGAATATTTCTTTAGAGGTCACCGAGACTGCCCCATTAGGTGATTGGATCCGCCACCTGTTGAGCAAGAGCGAACTTGTACATTCAACCGGAGAGGGAACCAAGAACGTGCTGGCCGAGTTGCAGCTGGATGAATTTCAGAATGTGAAATATCTCTGCCTGAAATCTTTTGATTCATTGACACATATCCAATGTCAGAATAATGTTTCATTTCCCAAACTCGAAAAACTG</gDNA_template>
            <first_frame> F  G  L  F  Q  Y  P  F  R  G  C  R  I  *  G  R  C  V  *  V  I  *  G  W  R  T  Y  P  L  L  V  N  L  S  L  *  R  F  L  A  *  E  I  L  S  *  R  S  C  P  R  R  *  V  N  *  L  I  *  S  C  *  S  C  G  M  R  K  N  H  W  K  *  F  H  Q  G  S  Y  Q  D  *  F  D  W  R  N  Y  I  *  *  M  *  E  I  V  V  T  P  P  *  R  N  *  N  P  Y  R  D  *  L  H  *  H  *  V  N  V  P  E  M  *  S  T  V  T  W  A  L  P  P  S  *  H  S  L  Q  L  Q  W  V  K  L  T  E  R  L  Q  A  W  M  I  T  T  R  I  F  L  *  R  S  P  R  L  P  H  *  V  I  G  S  A  T  C  *  A  R  A  N  L  Y  I  Q  P  E  R  E  P  R  T  C  W  P  S  C  S  W  M  N  F  R  M  *  N  I  S  A  *  N  L  L  I  H  *  H  I  S  N  V  R  I  M  F  H  F  P  N  S  K  N   </first_frame>
            <second_frame>  L  A  F  S  S  I  H  S  E  V  V  E  S  E  D  V  V  S  E  *  F  K  V  G  G  H  I  H  Y  W  S  T  C  H  F  R  D  S  *  H  K  R  F  S  V  R  G  A  A  Q  G  D  R  *  I  D  *  S  N  H  V  R  V  A  E  *  E  K  T  T  G  N  D  F  T  R  G  L  I  K  T  S  S  I  G  G  T  T  Y  N  E  C  K  K  L  *  L  L  H  L  E  G  T  R  I  L  I  E  I  D  C  T  D  I  K  *  M  F  R  R  C  D  L  Q  *  H  G  P  Y  L  Q  V  D  T  V  C  N  Y  S  G  *  S  L  Q  S  D  S  K  H  G  *  L  R  Q  E  Y  F  F  R  G  H  R  D  C  P  I  R  *  L  D  P  P  P  V  E  Q  E  R  T  C  T  F  N  R  R  G  N  Q  E  R  A  G  R  V  A  A  G  *  I  S  E  C  E  I  S  L  P  E  I  F  *  F  I  D  T  Y  P  M  S  E  *  C  F  I  S  Q  T  R  K  T  </second_frame>
            <third_frame>   W  P  F  P  V  S  I  Q  R  L  S  N  L  R  T  L  C  L  S  N  L  R  L  E  D  I  S  I  I  G  Q  L  V  T  L  E  I  L  S  I  R  D  S  Q  L  E  E  L  P  K  E  I  G  K  L  T  N  L  I  M  L  E  L  R  N  E  K  K  P  L  E  M  I  S  P  G  V  L  S  R  L  V  R  L  E  E  L  H  I  M  N  V  R  N  C  S  Y  S  T  L  K  E  L  E  S  L  S  R  L  T  A  L  T  L  S  E  C  S  G  D  V  I  Y  S  N  M  G  L  T  S  K  L  T  Q  F  A  I  T  V  G  K  A  Y  R  A  T  P  S  M  D  D  Y  D  K  N  I  S  L  E  V  T  E  T  A  P  L  G  D  W  I  R  H  L  L  S  K  S  E  L  V  H  S  T  G  E  G  T  K  N  V  L  A  E  L  Q  L  D  E  F  Q  N  V  K  Y  L  C  L  K  S  F  D  S  L  T  H  I  Q  C  Q  N  N  V  S  F  P  K  L  E  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19529" stop="20218"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPFPVSIQRLSNLRTLCLSNLRLEDISIIGQLVTLEILSIRDSQLEELPKEIGKLTNLIMLELRNEKKPLEMISPGVLSRLVRLEELHIMNVRNCSYSTLKELESLSRLTALTLSECSGDVIYSNMGLTSKLTQFAITVGKAYRATPSMDDYDKNISLEVTETAPLGDWIRHLLSKSELVHSTGEGTKNVLAELQLDEFQNVKYLCLKSFDSLTHIQCQNNVSFPKLEKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="28785" PGL_stop="28494"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28785" e_stop="28494"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="28785" e_stop="28494" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28785" stop="28494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCAATCTACTTGATCTAACTACGTGCAGACATGCCAAGGACTTGGGCATTGGTCTTGGCATGGATGATGGCAAAACAGTGCAACACAAGTTCAAGGTGCTTGGGTGTTGGCAAGGCAGCTTGAACGTGCATGGCTTACGTGCGGGCTAAGGACGTTGGCAAGACAGCATGTTGACTTGATGAAGCAAGGCTGTGAAGACTTGGCAAGGTCAAAGACAAAGGCAGTTCACCTGAAATTGCTGAAATAAAACTAAGTGTGGAAGACAGCTAAAATATTCTAAGTGTTGGAAGC</gDNA_template>
            <first_frame> R  N  L  L  D  L  T  T  C  R  H  A  K  D  L  G  I  G  L  G  M  D  D  G  K  T  V  Q  H  K  F  K  V  L  G  C  W  Q  G  S  L  N  V  H  G  L  R  A  G  *  G  R  W  Q  D  S  M  L  T  *  *  S  K  A  V  K  T  W  Q  G  Q  R  Q  R  Q  F  T  *  N  C  *  N  K  T  K  C  G  R  Q  L  K  Y  S  K  C  W  K  </first_frame>
            <second_frame>  A  I  Y  L  I  *  L  R  A  D  M  P  R  T  W  A  L  V  L  A  W  M  M  A  K  Q  C  N  T  S  S  R  C  L  G  V  G  K  A  A  *  T  C  M  A  Y  V  R  A  K  D  V  G  K  T  A  C  *  L  D  E  A  R  L  *  R  L  G  K  V  K  D  K  G  S  S  P  E  I  A  E  I  K  L  S  V  E  D  S  *  N  I  L  S  V  G  S </second_frame>
            <third_frame>   Q  S  T  *  S  N  Y  V  Q  T  C  Q  G  L  G  H  W  S  W  H  G  *  W  Q  N  S  A  T  Q  V  Q  G  A  W  V  L  A  R  Q  L  E  R  A  W  L  T  C  G  L  R  T  L  A  R  Q  H  V  D  L  M  K  Q  G  C  E  D  L  A  R  S  K  T  K  A  V  H  L  K  L  L  K  *  N  *  V  W  K  T  A  K  I  F  *  V  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0101P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60317" PGL_stop="62143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60317" e_stop="60642"/>
            <exon e_start="60738" e_stop="61018"/>
            <exon e_start="61525" e_stop="62143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60317" e_stop="60642" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60738" e_stop="61018" e_length="281"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="61525" e_stop="62143" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60317" stop="60642"/>
              <exon start="60738" stop="61018"/>
              <exon start="61525" stop="62143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313174" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATATTATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG : AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAGGTATATATAGTGGAACAAAATATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG : TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGACACACAAGAACCTCAAATAATGAGTGTTACTAATCCTATTCATGAAGTTGTGGCTTCTAATGGACAACAAACATTGAAACTACCAAGGACTTGTTCACTATCTCATTTATTAGAAATGGATTATTTTGGATCAATTTCACAACTATTTGATGACAATAATTCATACAATACTATTAGCCAAAATAATACATTAATGACCAATGTTAATGGATATGTTATGCCTCATCAAGCCATGGAGAAATTTCAACTAGGGGAAGTGTCACAAATTTCTATGAATCCATCCTATCAATTTCAGTAAGAAGGCGGTACGCGGCGATTAAATATTTCGACAACAATAATTACTATGCCTCAATTTAAAACAAGTTGATTACTAGTATCTCATCAATAATTGTAACGTATAGATGAAATTTAAAGGTCATGGTACTATAGGTAAAAAAAAAAAAAAAGATTGTTGTATTACTATAGAATTTTATTTTCGAGCACTTGTTTGAAAAATAATTAATTTGGTTCTGAAATTATAATATTAATATTTTACAAAG</gDNA_template>
            <first_frame> S  I  L  L  F  S  S  Y  I  E  S  N  S  P  T  S  T  P  L  Y  H  T  S  L  S  L  *  F  I  F  F  I  K  P  L  F  F  S  S  T  N  I  H  I  Y  *  L  F  F  L  K  K  N  G  W  *  K  *  F  Q  S  P  P  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  K  S  S  Y  L  Q  A  L  S  I  F  N  H  P  R  S  *  C  L  *  V  R  S  L  G  I  A  * :   K  N  *  I  W  R  K  R  M  V  F  L  H  P  T  *  *  K  I  S  K  W  C  *  A  K  *  G  S  C  V  W  L  L  E  S  H  R  H  R  *  R  Y  I  *  W  N  K  I  C  W  Y  *  K  S  S  C  I  L  *  R  K  T  P  *  R  Y  Q  D  *  L  D  H  A  *  I  *  I  E  *  I  K  D  S  T  N  *  A  K  W  I  H  E   : V  G  *  L  G  T  L  *  N  L  *  E  E  E  F  G  K  S  Y  R  D  D  E  S  *  R  R  H  T  R  T  S  N  N  E  C  Y  *  S  Y  S  *  S  C  G  F  *  W  T  T  N  I  E  T  T  K  D  L  F  T  I  S  F  I  R  N  G  L  F  W  I  N  F  T  T  I  *  *  Q  *  F  I  Q  Y  Y  *  P  K  *  Y  I  N  D  Q  C  *  W  I  C  Y  A  S  S  S  H  G  E  I  S  T  R  G  S  V  T  N  F  Y  E  S  I  L  S  I  S  V  R  R  R  Y  A  A  I  K  Y  F  D  N  N  N  Y  Y  A  S  I  *  N  K  L  I  T  S  I  S  S  I  I  V  T  Y  R  *  N  L  K  V  M  V  L  *  V  K  K  K  K  K  I  V  V  L  L  *  N  F  I  F  E  H  L  F  E  K  *  L  I  W  F  *  N  Y  N  I  N  I  L  Q   </first_frame>
            <second_frame>  Q  Y  Y  Y  F  P  L  T  *  N  Q  I  P  L  H  Q  P  H  F  I  I  L  L  L  A  Y  N  L  F  F  L  *  N  L  C  S  S  P  P  Q  I  F  I  Y  I  N  F  F  F  *  K  K  M  V  G  K  N  N  S  N  H  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  N  Q  A  T  S  K  P  C  P  S  S  I  I  P  E  V  D  V  Y  K  F  D  P  W  E  L  P   : E  K  T  E  F  G  E  K  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K  G  I  Y  S  G  T  K  Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  I  K  T  D  W  I  M  H  E  Y  R  L  S  E  S  R  T  Q  P  T  R  P  N  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  E  R  A  I  E  M  M  K  V  E  E  D  T  Q  E  P  Q  I  M  S  V  T  N  P  I  H  E  V  V  A  S  N  G  Q  Q  T  L  K  L  P  R  T  C  S  L  S  H  L  L  E  M  D  Y  F  G  S  I  S  Q  L  F  D  D  N  N  S  Y  N  T  I  S  Q  N  N  T  L  M  T  N  V  N  G  Y  V  M  P  H  Q  A  M  E  K  F  Q  L  G  E  V  S  Q  I  S  M  N  P  S  Y  Q  F  Q  *  E  G  G  T  R  R  L  N  I  S  T  T  I  I  T  M  P  Q  F  K  T  S  *  L  L  V  S  H  Q  *  L  *  R  I  D  E  I  *  R  S  W  Y  Y  R  *  K  K  K  K  R  L  L  Y  Y  Y  R  I  L  F  S  S  T  C  L  K  N  N  *  F  G  S  E  I  I  I  L  I  F  Y  K  </second_frame>
            <third_frame>   N  I  I  I  F  L  L  H  R  I  K  F  P  Y  I  N  P  T  L  S  Y  F  S  *  L  I  I  Y  F  F  Y  K  T  F  V  L  L  L  H  K  Y  S  Y  I  L  T  F  F  F  K  K  K  W  L  V  K  I  I  P  I  T  S  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  I  I  F  E  I  K  L  P  P  S  L  V  H  L  Q  S  S  P  K  L  M  S  I  S  S  I  P  G  N  C  L  :  K  K  L  N  L  E  K  K  N  G  I  S  S  P  H  V  I  E  N  I  Q  M  V  L  G  Q  I  G  Q  L  C  L  V  I  G  K  P  Q  A  Q  I  K  V  Y  I  V  E  Q  N  M  L  V  L  K  K  L  L  Y  F  I  K  E  N  P  L  K  V  S  R  L  I  G  S  C  M  N  I  D  *  V  N  Q  G  L  N  Q  L  G  Q  M  D  P  *  G :   W  M  I  G  Y  F  V  E  F  I  R  R  R  I  W  K  E  L  *  R  *  *  K  L  K  K  T  H  K  N  L  K  *  *  V  L  L  I  L  F  M  K  L  W  L  L  M  D  N  K  H  *  N  Y  Q  G  L  V  H  Y  L  I  Y  *  K  W  I  I  L  D  Q  F  H  N  Y  L  M  T  I  I  H  T  I  L  L  A  K  I  I  H  *  *  P  M  L  M  D  M  L  C  L  I  K  P  W  R  N  F  N  *  G  K  C  H  K  F  L  *  I  H  P  I  N  F  S  K  K  A  V  R  G  D  *  I  F  R  Q  Q  *  L  L  C  L  N  L  K  Q  V  D  Y  *  Y  L  I  N  N  C  N  V  *  M  K  F  K  G  H  G  T  I  G  K  K  K  K  K  D  C  C  I  T  I  E  F  Y  F  R  A  L  V  *  K  I  I  N  L  V  L  K  L  *  Y  *  Y  F  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60468" stop="60642"/>
                    <exon start="60738" stop="61018"/>
                    <exon start="61525" stop="61902"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVGKNNSNHLPPGFRFHPTDEELIMYYLRNQATSKPCPSSIIPEVDVYKFDPWELPEKTEFGEKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKGIYSGTKYVGIKKALVFYKGKPPKGIKTDWIMHEYRLSESRTQPTRPNGSMRLDDWVLCRIYKKKNLERAIEMMKVEEDTQEPQIMSVTNPIHEVVASNGQQTLKLPRTCSLSHLLEMDYFGSISQLFDDNNSYNTISQNNTLMTNVNGYVMPHQAMEKFQLGEVSQISMNPSYQFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60884" e_stop="61407"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60884" e_stop="61407" e_length="524"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60884" stop="61407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATGTTGGTATTAAAAAAGCTCTTGTATTTTATAAAGGAAAACCCCCTAAAGGTATCAAGACTGATTGGATCATGCATGAATATAGATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGGGTAAGCCTTTGGAAACACTATTTTTTTCCTAGATATTTTGATTGAATATTCACTAAGAAAATTAGTGGATATTTTAAAGTAGTTCAATGTAAATGTATACGTTTTTTTTTCTTTCAGTGAGCTGATTAATGGGAATTGAGTAGAAAAATATTTTTTTTATAGCTCATTGATTCGTGATGGGAAAAATAATTATTTCCGATAATGAGTCTCTAATTTTGTTTAGCTATAAAATTTGTTTATCGCTTTTTTTTTTCATAGAGTATAGTTTAAGTTTTGTATATTAATCAAATAATCATTTAAAAAATAATTATGTGTAATGATTGATATATACTATATTGAAAAATATGGCATGTAACTTTCTATAGCAAGTTAAGTTGTACTTATAATAA</gDNA_template>
            <first_frame> Y  V  G  I  K  K  A  L  V  F  Y  K  G  K  P  P  K  G  I  K  T  D  W  I  M  H  E  Y  R  L  S  E  S  R  T  Q  P  T  R  P  N  G  S  M  R  V  S  L  W  K  H  Y  F  F  P  R  Y  F  D  *  I  F  T  K  K  I  S  G  Y  F  K  V  V  Q  C  K  C  I  R  F  F  F  F  Q  *  A  D  *  W  E  L  S  R  K  I  F  F  L  *  L  I  D  S  *  W  E  K  *  L  F  P  I  M  S  L  *  F  C  L  A  I  K  F  V  Y  R  F  F  F  S  *  S  I  V  *  V  L  Y  I  N  Q  I  I  I  *  K  I  I  M  C  N  D  *  Y  I  L  Y  *  K  I  W  H  V  T  F  Y  S  K  L  S  C  T  Y  N   </first_frame>
            <second_frame>  M  L  V  L  K  K  L  L  Y  F  I  K  E  N  P  L  K  V  S  R  L  I  G  S  C  M  N  I  D  *  V  N  Q  G  L  N  Q  L  G  Q  M  D  P  *  G  *  A  F  G  N  T  I  F  F  L  D  I  L  I  E  Y  S  L  R  K  L  V  D  I  L  K  *  F  N  V  N  V  Y  V  F  F  S  F  S  E  L  I  N  G  N  *  V  E  K  Y  F  F  Y  S  S  L  I  R  D  G  K  N  N  Y  F  R  *  *  V  S  N  F  V  *  L  *  N  L  F  I  A  F  F  F  H  R  V  *  F  K  F  C  I  L  I  K  *  S  F  K  K  *  L  C  V  M  I  D  I  Y  Y  I  E  K  Y  G  M  *  L  S  I  A  S  *  V  V  L  I  I  </second_frame>
            <third_frame>   C  W  Y  *  K  S  S  C  I  L  *  R  K  T  P  *  R  Y  Q  D  *  L  D  H  A  *  I  *  I  E  *  I  K  D  S  T  N  *  A  K  W  I  H  E  G  K  P  L  E  T  L  F  F  S  *  I  F  *  L  N  I  H  *  E  N  *  W  I  F  *  S  S  S  M  *  M  Y  T  F  F  F  L  S  V  S  *  L  M  G  I  E  *  K  N  I  F  F  I  A  H  *  F  V  M  G  K  I  I  I  S  D  N  E  S  L  I  L  F  S  Y  K  I  C  L  S  L  F  F  F  I  E  Y  S  L  S  F  V  Y  *  S  N  N  H  L  K  N  N  Y  V  *  *  L  I  Y  T  I  L  K  N  M  A  C  N  F  L  *  Q  V  K  L  Y  L  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0101P13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="60325" e_stop="60642"/>
            <exon e_start="60738" e_stop="60863"/>
            <exon e_start="60970" e_stop="61018"/>
            <exon e_start="61525" e_stop="61604"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60325" e_stop="60642" e_length="318"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60643" i_stop="60737" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60738" e_stop="60863" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="60864" i_stop="60969" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60970" e_stop="61018" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="61019" i_stop="61524" i_length="506"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61525" e_stop="61604" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60325" stop="60642"/>
              <exon start="60738" stop="60863"/>
              <exon start="60970" stop="61018"/>
              <exon start="61525" stop="61604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTTCCTCTTACATAGAATCAAATTCCCCTACATCAACCCCACTTTATCATACTTCTCTTAGCTTATAATTTATTTTTTTTATAAAACCTTTGTTCTTCTCCTCCACAAATATTCATATATATTAACTTTTTTTTTTAAAAAAAAATGGTTGGTAAAAATAATTCCAATCACCTCCCTCCTGGATTTAGGTTTCATCCAACAGATGAGGAATTAATCATGTATTATCTTCGAAATCAAGCTACCTCCAAGCCTTGTCCATCTTCAATCATCCCCGAAGTTGATGTCTATAAGTTCGATCCCTGGGAATTGCCTG : AAAAAACTGAATTTGGAGAAAAAGAATGGTATTTCTTCACCCCACGTGATAGAAAATATCCAAATGGTGTTAGGCCAAATAGGGCAGCTGTGTCTGGTTATTGGAAAGCCACAGGCACAGATAAAG : ATTGAGTGAATCAAGGACTCAACCAACTAGGCCAAATGGATCCATGAGG : TTGGATGATTGGGTACTTTGTAGAATTTATAAGAAGAAGAATTTGGAAAGAGCTATAGAGATGATGAAAGTTGAAGAAGA</gDNA_template>
            <first_frame> I  I  F  L  L  H  R  I  K  F  P  Y  I  N  P  T  L  S  Y  F  S  *  L  I  I  Y  F  F  Y  K  T  F  V  L  L  L  H  K  Y  S  Y  I  L  T  F  F  F  K  K  K  W  L  V  K  I  I  P  I  T  S  L  L  D  L  G  F  I  Q  Q  M  R  N  *  S  C  I  I  F  E  I  K  L  P  P  S  L  V  H  L  Q  S  S  P  K  L  M  S  I  S  S  I  P  G  N  C  L  :  K  K  L  N  L  E  K  K  N  G  I  S  S  P  H  V  I  E  N  I  Q  M  V  L  G  Q  I  G  Q  L  C  L  V  I  G  K  P  Q  A  Q  I  K  :  I  E  *  I  K  D  S  T  N  *  A  K  W  I  H  E   : V  G  *  L  G  T  L  *  N  L  *  E  E  E  F  G  K  S  Y  R  D  D  E  S  *  R  R </first_frame>
            <second_frame>  L  F  S  S  Y  I  E  S  N  S  P  T  S  T  P  L  Y  H  T  S  L  S  L  *  F  I  F  F  I  K  P  L  F  F  S  S  T  N  I  H  I  Y  *  L  F  F  L  K  K  N  G  W  *  K  *  F  Q  S  P  P  S  W  I  *  V  S  S  N  R  *  G  I  N  H  V  L  S  S  K  S  S  Y  L  Q  A  L  S  I  F  N  H  P  R  S  *  C  L  *  V  R  S  L  G  I  A  * :   K  N  *  I  W  R  K  R  M  V  F  L  H  P  T  *  *  K  I  S  K  W  C  *  A  K  *  G  S  C  V  W  L  L  E  S  H  R  H  R  *  R :   L  S  E  S  R  T  Q  P  T  R  P  N  G  S  M  R  :  L  D  D  W  V  L  C  R  I  Y  K  K  K  N  L  E  R  A  I  E  M  M  K  V  E  E   </second_frame>
            <third_frame>   Y  F  P  L  T  *  N  Q  I  P  L  H  Q  P  H  F  I  I  L  L  L  A  Y  N  L  F  F  L  *  N  L  C  S  S  P  P  Q  I  F  I  Y  I  N  F  F  F  *  K  K  M  V  G  K  N  N  S  N  H  L  P  P  G  F  R  F  H  P  T  D  E  E  L  I  M  Y  Y  L  R  N  Q  A  T  S  K  P  C  P  S  S  I  I  P  E  V  D  V  Y  K  F  D  P  W  E  L  P   : E  K  T  E  F  G  E  K  E  W  Y  F  F  T  P  R  D  R  K  Y  P  N  G  V  R  P  N  R  A  A  V  S  G  Y  W  K  A  T  G  T  D  K   : D  *  V  N  Q  G  L  N  Q  L  G  Q  M  D  P  *  G :   W  M  I  G  Y  F  V  E  F  I  R  R  R  I  W  K  E  L  *  R  *  *  K  L  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60468" stop="60642"/>
                    <exon start="60738" stop="60863"/>
                    <exon start="60970" stop="60974"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVGKNNSNHLPPGFRFHPTDEELIMYYLRNQATSKPCPSSIIPEVDVYKFDPWELPEKTEFGEKEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60544" stop="60642"/>
                    <exon start="60738" stop="60863"/>
                    <exon start="60970" stop="60978"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCIIFEIKLPPSLVHLQSSPKLMSISSIPGNCLKKLNLEKKNGISSPHVIENIQMVLGQIGQLCLVIGKPQAQIKIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="64881" PGL_stop="63421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64881" e_stop="64629"/>
            <exon e_start="64454" e_stop="64331"/>
            <exon e_start="63949" e_stop="63600"/>
            <exon e_start="63429" e_stop="63421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.870" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.836" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64881" e_stop="64629" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.870" acc_prob="0.970">
            <gDNA_intron_boundary i_start="64628" i_stop="64455" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64454" e_stop="64331" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.836" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64330" i_stop="63950" i_length="381"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63949" e_stop="63600" e_length="350"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="63599" i_stop="63430" i_length="170"/>
          </intron>
          <exon e_serial="4" e_score="0.778">
            <gDNA_exon_boundary e_start="63429" e_stop="63421" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64881" stop="64629"/>
              <exon start="64454" stop="64331"/>
              <exon start="63949" stop="63600"/>
              <exon start="63429" stop="63421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323949" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTAATAGATACTTGAGCCATCGAAAAAACGAATGATGAAGGCGGTATCAGTTGAATCTGGAGAAGCATCAAAGGCTAAAGGTCATGGAGTTAACAGAGGACTCTCTGTATTTGATCTTGTTCTTCGTATTGTTGCGATTGTTGGTACCTTAGCTGGAGCTGTAGCAATGGGAACTGCTGAACAAACTCTTCCTTTTGCCACACAACTTGTGCAATTTTCAGCTCAATATGATGATTTTGACTCATTTAA : GTTGTTCGTGATTGTGAATGCAATAGTATGTGCATATCTTGCTCTTACTCTACCATTTTCCATCTTTCATATTATGAGGAGCAGAGCAGGAAAAAGTCGGATCTTGCTCATCTTCCTTGACGCG : ATAATGCTGGTTCTTCTCACATCTGGAGCCTCTGCAGCAGCTGCCATTGTGTATTTAGCACATACTGGGAACACTTCTGCTAACTGGTTTTCAGTTTGTCAACAGTATACCGATTTCTGCCAACGATCTGCTGGCTCTCTCATCGGCTCATTTGGCGCGATGGTGTGTCTTGTTCTCCTCATCATTTTCTCAGCTGTCGCGATATCCAGGCGATAAATCAATGCTGTTTACATTGGCTTGTGTATCTGTTGTGTTTGATATTTGACTAAAGTTTCATGCTTTGGATTTTGTATGCAATTTATCCTGTTACTTATATCAATAATATATATTGTGCCTGTTTAGTTTTTCAA : AAGAAATAA</gDNA_template>
            <first_frame> N  L  N  R  Y  L  S  H  R  K  N  E  *  *  R  R  Y  Q  L  N  L  E  K  H  Q  R  L  K  V  M  E  L  T  E  D  S  L  Y  L  I  L  F  F  V  L  L  R  L  L  V  P  *  L  E  L  *  Q  W  E  L  L  N  K  L  F  L  L  P  H  N  L  C  N  F  Q  L  N  M  M  I  L  T  H  L   : S  C  S  *  L  *  M  Q  *  Y  V  H  I  L  L  L  L  Y  H  F  P  S  F  I  L  *  G  A  E  Q  E  K  V  G  S  C  S  S  S  L  T  R :   *  C  W  F  F  S  H  L  E  P  L  Q  Q  L  P  L  C  I  *  H  I  L  G  T  L  L  L  T  G  F  Q  F  V  N  S  I  P  I  S  A  N  D  L  L  A  L  S  S  A  H  L  A  R  W  C  V  L  F  S  S  S  F  S  Q  L  S  R  Y  P  G  D  K  S  M  L  F  T  L  A  C  V  S  V  V  F  D  I  *  L  K  F  H  A  L  D  F  V  C  N  L  S  C  Y  L  Y  Q  *  Y  I  L  C  L  F  S  F  S   : K  E  I  </first_frame>
            <second_frame>  I  L  I  D  T  *  A  I  E  K  T  N  D  E  G  G  I  S  *  I  W  R  S  I  K  G  *  R  S  W  S  *  Q  R  T  L  C  I  *  S  C  S  S  Y  C  C  D  C  W  Y  L  S  W  S  C  S  N  G  N  C  *  T  N  S  S  F  C  H  T  T  C  A  I  F  S  S  I  *  *  F  *  L  I  *  :  V  V  R  D  C  E  C  N  S  M  C  I  S  C  S  Y  S  T  I  F  H  L  S  Y  Y  E  E  Q  S  R  K  K  S  D  L  A  H  L  P  *  R   : D  N  A  G  S  S  H  I  W  S  L  C  S  S  C  H  C  V  F  S  T  Y  W  E  H  F  C  *  L  V  F  S  L  S  T  V  Y  R  F  L  P  T  I  C  W  L  S  H  R  L  I  W  R  D  G  V  S  C  S  P  H  H  F  L  S  C  R  D  I  Q  A  I  N  Q  C  C  L  H  W  L  V  Y  L  L  C  L  I  F  D  *  S  F  M  L  W  I  L  Y  A  I  Y  P  V  T  Y  I  N  N  I  Y  C  A  C  L  V  F  Q  :  K  K  * </second_frame>
            <third_frame>   S  *  *  I  L  E  P  S  K  K  R  M  M  K  A  V  S  V  E  S  G  E  A  S  K  A  K  G  H  G  V  N  R  G  L  S  V  F  D  L  V  L  R  I  V  A  I  V  G  T  L  A  G  A  V  A  M  G  T  A  E  Q  T  L  P  F  A  T  Q  L  V  Q  F  S  A  Q  Y  D  D  F  D  S  F  K :   L  F  V  I  V  N  A  I  V  C  A  Y  L  A  L  T  L  P  F  S  I  F  H  I  M  R  S  R  A  G  K  S  R  I  L  L  I  F  L  D  A  :  I  M  L  V  L  L  T  S  G  A  S  A  A  A  A  I  V  Y  L  A  H  T  G  N  T  S  A  N  W  F  S  V  C  Q  Q  Y  T  D  F  C  Q  R  S  A  G  S  L  I  G  S  F  G  A  M  V  C  L  V  L  L  I  I  F  S  A  V  A  I  S  R  R  *  I  N  A  V  Y  I  G  L  C  I  C  C  V  *  Y  L  T  K  V  S  C  F  G  F  C  M  Q  F  I  L  L  L  I  S  I  I  Y  I  V  P  V  *  F  F  K :   R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64870" stop="64629"/>
                    <exon start="64454" stop="64331"/>
                    <exon start="63949" stop="63734"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEPSKKRMMKAVSVESGEASKAKGHGVNRGLSVFDLVLRIVAIVGTLAGAVAMGTAEQTLPFATQLVQFSAQYDDFDSFKLFVIVNAIVCAYLALTLPFSIFHIMRSRAGKSRILLIFLDAIMLVLLTSGASAAAAIVYLAHTGNTSANWFSVCQQYTDFCQRSAGSLIGSFGAMVCLVLLIIFSAVAISRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="66972" PGL_stop="66475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66972" e_stop="66475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66972" e_stop="66475" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66972" stop="66475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGGGATGTCCCCAGGTACTTGCACTAAATCTCGACATTATGAAGAAGAGTTTTGAGTATTTCAAAACTACAATGGCTAGGCCTTTGGAAGATTTGGTCGCTTTCCCAGCTTTCTTCACTTATGGTCTGGAGTCCACAATAAAACCAAGACATAAAAAGATAGCTGAGAAGGCCTTAAAATGTTCCCTTGCATGGCTTCTTAATTGTTCTGATGAGAAATTTGATCAGCGGATGAGTTACGACATTATTGACATGGAAGAAATGGAAGTAGGTGAATCATCCTTCGATATGAATACTCTATTGGAGCCCAGAAATGATGAATCAGCTTCTGATTACGACGATGATTACAGTGAAGACGACAATGTATAGACTACTCAAGTGGATGTTCTGTTCACTCCCCCAGAGTATGTAAATGCTAACTATTTCAAATTTTCTGAGTTTTGAATGGCCATGAAGGTGGCCAATGGGGTTTATCAAACTGAATATAGGAAGGGGGAT</gDNA_template>
            <first_frame> V  G  C  P  Q  V  L  A  L  N  L  D  I  M  K  K  S  F  E  Y  F  K  T  T  M  A  R  P  L  E  D  L  V  A  F  P  A  F  F  T  Y  G  L  E  S  T  I  K  P  R  H  K  K  I  A  E  K  A  L  K  C  S  L  A  W  L  L  N  C  S  D  E  K  F  D  Q  R  M  S  Y  D  I  I  D  M  E  E  M  E  V  G  E  S  S  F  D  M  N  T  L  L  E  P  R  N  D  E  S  A  S  D  Y  D  D  D  Y  S  E  D  D  N  V  *  T  T  Q  V  D  V  L  F  T  P  P  E  Y  V  N  A  N  Y  F  K  F  S  E  F  *  M  A  M  K  V  A  N  G  V  Y  Q  T  E  Y  R  K  G  D </first_frame>
            <second_frame>  W  D  V  P  R  Y  L  H  *  I  S  T  L  *  R  R  V  L  S  I  S  K  L  Q  W  L  G  L  W  K  I  W  S  L  S  Q  L  S  S  L  M  V  W  S  P  Q  *  N  Q  D  I  K  R  *  L  R  R  P  *  N  V  P  L  H  G  F  L  I  V  L  M  R  N  L  I  S  G  *  V  T  T  L  L  T  W  K  K  W  K  *  V  N  H  P  S  I  *  I  L  Y  W  S  P  E  M  M  N  Q  L  L  I  T  T  M  I  T  V  K  T  T  M  Y  R  L  L  K  W  M  F  C  S  L  P  Q  S  M  *  M  L  T  I  S  N  F  L  S  F  E  W  P  *  R  W  P  M  G  F  I  K  L  N  I  G  R  G   </second_frame>
            <third_frame>   G  M  S  P  G  T  C  T  K  S  R  H  Y  E  E  E  F  *  V  F  Q  N  Y  N  G  *  A  F  G  R  F  G  R  F  P  S  F  L  H  L  W  S  G  V  H  N  K  T  K  T  *  K  D  S  *  E  G  L  K  M  F  P  C  M  A  S  *  L  F  *  *  E  I  *  S  A  D  E  L  R  H  Y  *  H  G  R  N  G  S  R  *  I  I  L  R  Y  E  Y  S  I  G  A  Q  K  *  *  I  S  F  *  L  R  R  *  L  Q  *  R  R  Q  C  I  D  Y  S  S  G  C  S  V  H  S  P  R  V  C  K  C  *  L  F  Q  I  F  *  V  L  N  G  H  E  G  G  Q  W  G  L  S  N  *  I  *  E  G  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66972" stop="66604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGCPQVLALNLDIMKKSFEYFKTTMARPLEDLVAFPAFFTYGLESTIKPRHKKIAEKALKCSLAWLLNCSDEKFDQRMSYDIIDMEEMEVGESSFDMNTLLEPRNDESASDYDDDYSEDDNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="77465" PGL_stop="74565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77465" e_stop="77386"/>
            <exon e_start="77135" e_stop="77053"/>
            <exon e_start="76021" e_stop="74682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.711" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77465" e_stop="77386" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.979">
            <gDNA_intron_boundary i_start="77385" i_stop="77136" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="77135" e_stop="77053" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.711">
            <gDNA_intron_boundary i_start="77052" i_stop="76022" i_length="1031"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="76021" e_stop="74682" e_length="1340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77465" stop="77386"/>
              <exon start="77135" stop="77053"/>
              <exon start="76021" stop="74682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGTTTCATAAACAACCATTTTTGTTGAAAAGGAAAACTCCATTATCGGTGTTGAAGGATTGTTGTCCGTCTATACTGG : GCATGCCAACTATTGGGATGGCATCTCGGTTTGTTAGTTGCTGTGCAGTATGATCACTGTGGCAGGATCTGTGTTCTGCAATA : GAAGTTTGTGTTTCTGGCAGAACCATTGTCTTTACGCTGAGCAGTAAAGACTGAAAAATGTCAAGTGCCTTGGCTAATGGGCTGGCTGGAGCTGGTGGGGGCATAATTGCACAAATAATTACTTACCCCCTCCAAACTGTCAATACACGGCAGCAGACTGAGAGGGTCTCGAGAGAGGGCCGTGATTCTCGTGGCAGTGCCCTGTTTCAAATCTTACAGGTGGTTAGAAGTGAAGGCTTGCCAGGGCTTTACAGTGGCCTGAAGCCTTCTCTGCTCGGAACTGCCGTGTCACAGGGTGTCTACTACTATTTTTACCAGGTTTTCAAGAACAGGGCTGAGGCTATAGCAGCTGCAAATAAGAAAAGAGGCCGAGGGGATGGTTCTGTTGGGATGCTTTCTTGGCTCGTTGTGGCAGCTCTTGCAGGTTCAGTAAATGTATTGTTGACAAACCCTATATGGGTTCTAGTTACTCGTATGCAGACTCATACACAAGCAGAAAGGAAAATCGTGGAGGCAAAAAGGGAAACCCTATTAAAAGAAGCTTCTCAAAGTGTCTTGACAGCTTCTTCCTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTTATAATTGT</gDNA_template>
            <first_frame> T  V  S  *  T  T  I  F  V  E  K  E  N  S  I  I  G  V  E  G  L  L  S  V  Y  T  G :   H  A  N  Y  W  D  G  I  S  V  C  *  L  L  C  S  M  I  T  V  A  G  S  V  F  C  N   : R  S  L  C  F  W  Q  N  H  C  L  Y  A  E  Q  *  R  L  K  N  V  K  C  L  G  *  W  A  G  W  S  W  W  G  H  N  C  T  N  N  Y  L  P  P  P  N  C  Q  Y  T  A  A  D  *  E  G  L  E  R  G  P  *  F  S  W  Q  C  P  V  S  N  L  T  G  G  *  K  *  R  L  A  R  A  L  Q  W  P  E  A  F  S  A  R  N  C  R  V  T  G  C  L  L  L  F  L  P  G  F  Q  E  Q  G  *  G  Y  S  S  C  K  *  E  K  R  P  R  G  W  F  C  W  D  A  F  L  A  R  C  G  S  S  C  R  F  S  K  C  I  V  D  K  P  Y  M  G  S  S  Y  S  Y  A  D  S  Y  T  S  R  K  E  N  R  G  G  K  K  G  N  P  I  K  R  S  F  S  K  C  L  D  S  F  F  L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T  Y  N  C </first_frame>
            <second_frame>  L  F  H  K  Q  P  F  L  L  K  R  K  T  P  L  S  V  L  K  D  C  C  P  S  I  L   : G  M  P  T  I  G  M  A  S  R  F  V  S  C  C  A  V  *  S  L  W  Q  D  L  C  S  A  I  :  E  V  C  V  S  G  R  T  I  V  F  T  L  S  S  K  D  *  K  M  S  S  A  L  A  N  G  L  A  G  A  G  G  G  I  I  A  Q  I  I  T  Y  P  L  Q  T  V  N  T  R  Q  Q  T  E  R  V  S  R  E  G  R  D  S  R  G  S  A  L  F  Q  I  L  Q  V  V  R  S  E  G  L  P  G  L  Y  S  G  L  K  P  S  L  L  G  T  A  V  S  Q  G  V  Y  Y  Y  F  Y  Q  V  F  K  N  R  A  E  A  I  A  A  A  N  K  K  R  G  R  G  D  G  S  V  G  M  L  S  W  L  V  V  A  A  L  A  G  S  V  N  V  L  L  T  N  P  I  W  V  L  V  T  R  M  Q  T  H  T  Q  A  E  R  K  I  V  E  A  K  R  E  T  L  L  K  E  A  S  Q  S  V  L  T  A  S  S  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  I  I   </second_frame>
            <third_frame>   C  F  I  N  N  H  F  C  *  K  G  K  L  H  Y  R  C  *  R  I  V  V  R  L  Y  W  :  A  C  Q  L  L  G  W  H  L  G  L  L  V  A  V  Q  Y  D  H  C  G  R  I  C  V  L  Q  * :   K  F  V  F  L  A  E  P  L  S  L  R  *  A  V  K  T  E  K  C  Q  V  P  W  L  M  G  W  L  E  L  V  G  A  *  L  H  K  *  L  L  T  P  S  K  L  S  I  H  G  S  R  L  R  G  S  R  E  R  A  V  I  L  V  A  V  P  C  F  K  S  Y  R  W  L  E  V  K  A  C  Q  G  F  T  V  A  *  S  L  L  C  S  E  L  P  C  H  R  V  S  T  T  I  F  T  R  F  S  R  T  G  L  R  L  *  Q  L  Q  I  R  K  E  A  E  G  M  V  L  L  G  C  F  L  G  S  L  W  Q  L  L  Q  V  Q  *  M  Y  C  *  Q  T  L  Y  G  F  *  L  L  V  C  R  L  I  H  K  Q  K  G  K  S  W  R  Q  K  G  K  P  Y  *  K  K  L  L  K  V  S  *  Q  L  L  P  W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75967" stop="74912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMSSALANGLAGAGGGIIAQIITYPLQTVNTRQQTERVSREGRDSRGSALFQILQVVRSEGLPGLYSGLKPSLLGTAVSQGVYYYFYQVFKNRAEAIAAANKKRGRGDGSVGMLSWLVVAALAGSVNVLLTNPIWVLVTRMQTHTQAERKIVEAKRETLLKEASQSVLTASSLEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75452" e_stop="74690"/>
            <exon e_start="74582" e_stop="74565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.778"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="75452" e_stop="74690" e_length="763"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="74689" i_stop="74583" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="0.778">
            <gDNA_exon_boundary e_start="74582" e_stop="74565" e_length="18"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75452" stop="74690"/>
              <exon start="74582" stop="74565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGAAGTACAGCTCGCTGAACTTGATTCGTTGAAACCTCATCCTTACGGGACATTGCAAGCAGCACGAGAGGTTTATAATGAATCAGGAGTCACAGGATTCTGGAAAGGAGTCATCCCAGCATTGATCATGGTGTCTAATCCCTCGATTCAGTTCATGATTATTGAGAGTTTGTCGAAGCAGTTAAGGGCTAAACGTGCTGCGAAGAATAAAGACCAGCAGAATATAACTGCTTTGGAAGTTTTTATTATCGGAGCCTTTGCTAAACTTGGAGCAACTGTATGCACATATCCATTGTTGGTTGTGAAGTCAAGGCTTCAAGCAAAGCAGGAGATTAGTGGAAATGTCTCATTACGATATTCAGGTACAGTCGATGCTATTATTAAGATGATTCATCACGAAGGATTCAGATGCTTCTATCAAGGAATGCGCACAAAAATAGTGCAGAGTGTCTTTGCAGCCTCTGTACTTTTCATGGTGAAGGAAGAGCTCGTCAAAGTCTACGCTGTTTTAGCTAACAAAAGTAAGGTTAATGTATAGCTTGCAGTCATAAAGTGAACTACTTAATAAATCTTCTTGCTGGATAATTGCATATGATTTGTACTGTATTTGTATTCAAATTACAGAGTAATAATTGTAATATTCCCTAAAGAAAGCCATAGTAAGCTTGAAAGTGAAAAGTAGCTCAGATGAATGAAACTATTATTTGAGATAACTGCCCTTTTGGGGTTATATTTTGATAATTAGTGCATCTGTTGACTT : TCAAAATAAACAACAAAA</gDNA_template>
            <first_frame> L  G  S  T  A  R  *  T  *  F  V  E  T  S  S  L  R  D  I  A  S  S  T  R  G  L  *  *  I  R  S  H  R  I  L  E  R  S  H  P  S  I  D  H  G  V  *  S  L  D  S  V  H  D  Y  *  E  F  V  E  A  V  K  G  *  T  C  C  E  E  *  R  P  A  E  Y  N  C  F  G  S  F  Y  Y  R  S  L  C  *  T  W  S  N  C  M  H  I  S  I  V  G  C  E  V  K  A  S  S  K  A  G  D  *  W  K  C  L  I  T  I  F  R  Y  S  R  C  Y  Y  *  D  D  S  S  R  R  I  Q  M  L  L  S  R  N  A  H  K  N  S  A  E  C  L  C  S  L  C  T  F  H  G  E  G  R  A  R  Q  S  L  R  C  F  S  *  Q  K  *  G  *  C  I  A  C  S  H  K  V  N  Y  L  I  N  L  L  A  G  *  L  H  M  I  C  T  V  F  V  F  K  L  Q  S  N  N  C  N  I  P  *  R  K  P  *  *  A  *  K  *  K  V  A  Q  M  N  E  T  I  I  *  D  N  C  P  F  G  V  I  F  *  *  L  V  H  L  L  T   : F  K  I  N  N  K  </first_frame>
            <second_frame>  L  E  V  Q  L  A  E  L  D  S  L  K  P  H  P  Y  G  T  L  Q  A  A  R  E  V  Y  N  E  S  G  V  T  G  F  W  K  G  V  I  P  A  L  I  M  V  S  N  P  S  I  Q  F  M  I  I  E  S  L  S  K  Q  L  R  A  K  R  A  A  K  N  K  D  Q  Q  N  I  T  A  L  E  V  F  I  I  G  A  F  A  K  L  G  A  T  V  C  T  Y  P  L  L  V  V  K  S  R  L  Q  A  K  Q  E  I  S  G  N  V  S  L  R  Y  S  G  T  V  D  A  I  I  K  M  I  H  H  E  G  F  R  C  F  Y  Q  G  M  R  T  K  I  V  Q  S  V  F  A  A  S  V  L  F  M  V  K  E  E  L  V  K  V  Y  A  V  L  A  N  K  S  K  V  N  V  *  L  A  V  I  K  *  T  T  *  *  I  F  L  L  D  N  C  I  *  F  V  L  Y  L  Y  S  N  Y  R  V  I  I  V  I  F  P  K  E  S  H  S  K  L  E  S  E  K  *  L  R  *  M  K  L  L  F  E  I  T  A  L  L  G  L  Y  F  D  N  *  C  I  C  *  L  :  S  K  *  T  T  K </second_frame>
            <third_frame>   W  K  Y  S  S  L  N  L  I  R  *  N  L  I  L  T  G  H  C  K  Q  H  E  R  F  I  M  N  Q  E  S  Q  D  S  G  K  E  S  S  Q  H  *  S  W  C  L  I  P  R  F  S  S  *  L  L  R  V  C  R  S  S  *  G  L  N  V  L  R  R  I  K  T  S  R  I  *  L  L  W  K  F  L  L  S  E  P  L  L  N  L  E  Q  L  Y  A  H  I  H  C  W  L  *  S  Q  G  F  K  Q  S  R  R  L  V  E  M  S  H  Y  D  I  Q  V  Q  S  M  L  L  L  R  *  F  I  T  K  D  S  D  A  S  I  K  E  C  A  Q  K  *  C  R  V  S  L  Q  P  L  Y  F  S  W  *  R  K  S  S  S  K  S  T  L  F  *  L  T  K  V  R  L  M  Y  S  L  Q  S  *  S  E  L  L  N  K  S  S  C  W  I  I  A  Y  D  L  Y  C  I  C  I  Q  I  T  E  *  *  L  *  Y  S  L  K  K  A  I  V  S  L  K  V  K  S  S  S  D  E  *  N  Y  Y  L  R  *  L  P  F  W  G  Y  I  L  I  I  S  A  S  V  D  F :   Q  N  K  Q  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75451" stop="74912"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEVQLAELDSLKPHPYGTLQAAREVYNESGVTGFWKGVIPALIMVSNPSIQFMIIESLSKQLRAKRAAKNKDQQNITALEVFIIGAFAKLGATVCTYPLLVVKSRLQAKQEISGNVSLRYSGTVDAIIKMIHHEGFRCFYQGMRTKIVQSVFAASVLFMVKEELVKVYAVLANKSKVNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="85421" PGL_stop="84697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85421" e_stop="84697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="85421" e_stop="84697" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85421" stop="84697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341941" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACCTCCAACACTTGTTCCTTAGTGTTTTTTTTTCCTTCTAATCTTCTTCATATGGTTCCCTTCTCTCTTTGTCCATAACTTGTCTCTCAAATAGTTATCATCCTCTTCTCTTTTTAAACTCCCCACAACACACACACACACATTCATTCAAACAACATATTCTATCTATTGACACCTTAATTAACACAAATTCTTGCCTTCTTAACACAGTATAATGTCAAATCGAAGAACACGCGGTTCGAGACAATCATCAGGAGCTTCTAGAATAAGTGATGATCAAATTGCTGATCTCGTATCAAAGTTACAATTACTTATCCCTGAAAGCCGGAGCACTAGGAGTTCCGATAAGGTAGTATTTTTCAGTTTAAGTTATATATACCGACAGTTTGAATTCCTTAGTTATATATAAGCATGTTGAATTGTACTTGTTGTGGTACATTCACACATTTTGACAATGTTATTTGGTTACATTTTGTTTGTTCTCTTCTTTTACTTGCTATAAACTATATATGTTGTGTTTGTAAAAATGAATTGAATTATATTTTTCCTTGAAGCCATTCATATTTTTTTGTGGCCTTCATTATCTTTTTAGGGATAAGTTTAATTTGAAAGTCATATTCTCATGCCCACTAGGCCATATTGCAAGCTCCCTCATTTAATATTTTGTGTTGCTTAAGCATGTGGTGTAGGACTCTTTGTCACTTCATAACATTTCTTGGCCT</gDNA_template>
            <first_frame> F  T  S  N  T  C  S  L  V  F  F  F  P  S  N  L  L  H  M  V  P  F  S  L  C  P  *  L  V  S  Q  I  V  I  I  L  F  S  F  *  T  P  H  N  T  H  T  H  I  H  S  N  N  I  F  Y  L  L  T  P  *  L  T  Q  I  L  A  F  L  T  Q  Y  N  V  K  S  K  N  T  R  F  E  T  I  I  R  S  F  *  N  K  *  *  S  N  C  *  S  R  I  K  V  T  I  T  Y  P  *  K  P  E  H  *  E  F  R  *  G  S  I  F  Q  F  K  L  Y  I  P  T  V  *  I  P  *  L  Y  I  S  M  L  N  C  T  C  C  G  T  F  T  H  F  D  N  V  I  W  L  H  F  V  C  S  L  L  L  L  A  I  N  Y  I  C  C  V  C  K  N  E  L  N  Y  I  F  P  *  S  H  S  Y  F  F  V  A  F  I  I  F  L  G  I  S  L  I  *  K  S  Y  S  H  A  H  *  A  I  L  Q  A  P  S  F  N  I  L  C  C  L  S  M  W  C  R  T  L  C  H  F  I  T  F  L  G   </first_frame>
            <second_frame>  S  P  P  T  L  V  P  *  C  F  F  F  L  L  I  F  F  I  W  F  P  S  L  F  V  H  N  L  S  L  K  *  L  S  S  S  S  L  F  K  L  P  T  T  H  T  H  T  F  I  Q  T  T  Y  S  I  Y  *  H  L  N  *  H  K  F  L  P  S  *  H  S  I  M  S  N  R  R  T  R  G  S  R  Q  S  S  G  A  S  R  I  S  D  D  Q  I  A  D  L  V  S  K  L  Q  L  L  I  P  E  S  R  S  T  R  S  S  D  K  V  V  F  F  S  L  S  Y  I  Y  R  Q  F  E  F  L  S  Y  I  *  A  C  *  I  V  L  V  V  V  H  S  H  I  L  T  M  L  F  G  Y  I  L  F  V  L  F  F  Y  L  L  *  T  I  Y  V  V  F  V  K  M  N  *  I  I  F  F  L  E  A  I  H  I  F  L  W  P  S  L  S  F  *  G  *  V  *  F  E  S  H  I  L  M  P  T  R  P  Y  C  K  L  P  H  L  I  F  C  V  A  *  A  C  G  V  G  L  F  V  T  S  *  H  F  L  A  </second_frame>
            <third_frame>   H  L  Q  H  L  F  L  S  V  F  F  S  F  *  S  S  S  Y  G  S  L  L  S  L  S  I  T  C  L  S  N  S  Y  H  P  L  L  F  L  N  S  P  Q  H  T  H  T  H  S  F  K  Q  H  I  L  S  I  D  T  L  I  N  T  N  S  C  L  L  N  T  V  *  C  Q  I  E  E  H  A  V  R  D  N  H  Q  E  L  L  E  *  V  M  I  K  L  L  I  S  Y  Q  S  Y  N  Y  L  S  L  K  A  G  A  L  G  V  P  I  R  *  Y  F  S  V  *  V  I  Y  T  D  S  L  N  S  L  V  I  Y  K  H  V  E  L  Y  L  L  W  Y  I  H  T  F  *  Q  C  Y  L  V  T  F  C  L  F  S  S  F  T  C  Y  K  L  Y  M  L  C  L  *  K  *  I  E  L  Y  F  S  L  K  P  F  I  F  F  C  G  L  H  Y  L  F  R  D  K  F  N  L  K  V  I  F  S  C  P  L  G  H  I  A  S  S  L  I  *  Y  F  V  L  L  K  H  V  V  *  D  S  L  S  L  H  N  I  S  W  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0101P13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85213" stop="85010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSIMSNRRTRGSRQSSGASRISDDQIADLVSKLQLLIPESRSTRSSDKVVFFSLSYIYRQFEFLSYI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 30 chains have been computed
$ 
$ memory statistics:
$ 116472 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 7764 bytes was the average size of a spliced alignment
$ 18192 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1653 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 38 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:48:13
-->
