<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 04:00:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="1700" stop="547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1400" g_stop="847" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1400" e_stop="847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTACTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAGAATGAGAAATTGACACCCCAACCTACCCCAGAAATGATTAATCAGGTTCTTGCCTATCTTAGCGAGATATCTGACCAGGGCCAGACACCTCTACTGCTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCAGCTACTATGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGGTTGACTACAGGGCCTATAATGACGAGTGATCAGCACGAACTTTTCAGTAAGCTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTATACAAGATGGGTTTAGTAGAACGATTTGGTGTTGAGTTTTTGACCTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCTACGAACATAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="2058" stop="1174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1758" g_stop="1474" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1758" e_stop="1474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTA-GGGGACGCGTTTACTTTTCTTTGAGATGCTATAATACTTTAGGAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTACTGCTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGTAGATGGTTAGAACTAGAGCAACGACTGCACCAACACCAACACCGGCAAGGCAAGATGCATCTGAGCCAGCCACTAGGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="8908" stop="7876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8608" g_stop="8176" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8608" e_stop="8176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACAAGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGAACATCCATGCGAGGAGCCGTAGTAGCCGCATGTTGTAACTCTAAAACCGGAGGTGTTGGTGCAGAAAACACTGGAAGTGCCTGACCTTGATCAGAAAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCGTTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACATCCTCCCATGATCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="9983" stop="7947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9683" g_stop="8247" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9683" e_stop="8247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTTATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTATGTTTTGGACAAATCCTCTTAATATGTCCAGTCTCCCCACATCCATAACACTCTTTGGAGTCAAGCATAGGTCTCTCAGAGAGGTGTTGACCAGTCTAAGGTTGACCCCCACTTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTGGTGAATTCATCTGGCTTCACTACTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGGCGAATCTGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGGCCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAATGTTCGGGGGATATACTTCTCCATAACCAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCACCACCAAATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGATAATCGTAAGCATCCTCAGATTCCACACCCTTGAAGACAAGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGAACATCCATGCGAGGAGCCGTAGTAGCCGCATGTTGTAACTCTAAAACCGGAGGTGTTGGTGCAGAAAACACTGGAAGTGCCTGACCTTGATCAGAAAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCGTTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="+" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="8570" stop="10579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8870" g_stop="9056" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9057" i_stop="9801" i_length="745">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9802" g_stop="10315" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8870" e_stop="9056"/>
          <exon e_start="9802" e_stop="10315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGCCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCAGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAGGTGGTAGACTTCGTGATAGAGGTGGAAGTAGTGAAGCCAGATGAATTCACCACGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAAGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTGTAAGTGGGGGTCAACCTTAGACTGGTCAACACCTCTCTGAGAGACCTATGCTTGACTCCAAAGAGTGTTATGGATGTGGGGAGACTGGACATATTAAGAGGATTTGTCCAAAACATAGTTATAGACCCCCAATGGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGAAAACTGGAACCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATAACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATATATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTTGATTTGGTTATCTTAGAAATGGATAATTTTTGATGTAATTCAAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTTGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="9987" stop="8829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9687" g_stop="9129" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9687" e_stop="9129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTTATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTATGTTTTGGACAAATCCTCTTAATATGTCCAGTCTCCCCACATCCATAACACTCTTTGGAGTCAAGCATAGGTCTCTCAGAGAGGTGTTGACCAGTCTAAGGTTGACCCCCACTTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="95950" stop="9240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10298" g_stop="9540" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10298" e_stop="9540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCAAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTTGAATTACATCAAAAATTATCCATTTCTAAGATAACCAAATCAACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTTATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATC-AAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="11187" stop="9875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10887" g_stop="10175" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10887" e_stop="10175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTTTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGGTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATATCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTTAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCAAATGAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="12668" stop="11891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12368" g_stop="12192" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12368" e_stop="12192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATTACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323170" ref_strand="+" ref_description="SGN-U323170        Tomato 200607 #1 [7 ESTs aligned]">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="+" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="83879" stop="84622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84179" g_stop="84322" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="+" ref_id="SGN-U323170" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>144</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84179" e_stop="84322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGGACATGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315285" ref_strand="+" ref_description="SGN-U315285        Tomato 200607 #1 [6 ESTs aligned]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtcctcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtctcgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagaatactcatagtttagtcatttgatcgtagatgttcttgtgatgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="+" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="6368" stop="93837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91833" g_stop="92162" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92163" i_stop="92232" i_length="70">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92233" g_stop="93497" g_length="1265"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="1614" r_length="1282" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="+" ref_id="SGN-U315285" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>1595</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91833" e_stop="92162"/>
          <exon e_start="92233" e_stop="93497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATTGGGTGTCACAAACCGACACATAGATTTAGGGGATCGGGTGTCACAAATTGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATAAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACCGACACTTAGATTTAGGGGATCGG-GTGTCACGAATCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCAGAGTGTTACGTACCGACATAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTATTATACTCAATCTAATGAACATGATTTCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAATATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGGGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGAAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTCAACTTCCGGCATGGACTAGTTTCTTATGTATTTTTAGCTTTTAGAATACTATTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAAATTTTGGGG----ATA-A---T-AA---T---AGTTATTG-A-T--T-T-TA-TTAATGAGTTTAAGTCTTCCGCATTACATTATGTTGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGTGCCCGGATTTAGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCAGCACATAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCCTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACAC......................................................................GTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTCCTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTCGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCATAGTTTAGTCATTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGG-TTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAA-TT--C-CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335073" ref_strand="+" ref_description="SGN-U335073        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="+" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="92952" stop="93837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93252" g_stop="93537" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="+" ref_id="SGN-U335073" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93252" e_stop="93537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCAGCACATAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCCTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="96019" stop="94760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95719" g_stop="95060" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95719" e_stop="95060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGTTTACCTTGTTTAGTTGTCTGTAGTCTATACGCATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCCTTGTTCAATAACTCTTGAAGTTATGCCTTTAACTCTCTTAACTCTGCAGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAAGTACTTGGGTAGTGTCATCCTTGAGATGTTCCAAGAAAGCTAAAAACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATTATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACAAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAA-TAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="98019" stop="97242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97719" g_stop="97543" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97719" e_stop="97543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATATCCTCCCATACAATGCTTCAAATGGGGACATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335079" ref_strand="+" ref_description="SGN-U335079        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="-" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="100222" stop="13736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99922" g_stop="99585" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="-" ref_id="SGN-U335079" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99922" e_stop="99585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAAAAGAAATCAATATATATCAAGTAATTTCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACAATCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTAAATATATGTGTCAG-TTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336736" ref_strand="+" ref_description="SGN-U336736        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|18450265|ref|NP_569140.1| putative cell-to-cell movement protein [tobacco vein-clearing virus] gi|6425074|gb|AAF08288.1| putative cell-to-cell movement protein [tobacco vein-clearing virus](evalue: 7e-71, score=265)">
      <seq>atattatataaaaaaataataaaataaaaagaccatatagaccaaaaagaaaaatattccaatgtacttgttataattgcggaaagataggacatttagctagagattgtaaactacccaaagatccgaaaatgaagcaaattgcagaagtaattatagataatcataaatatatgcaaatagaatacatagactatgaattaagtgaagacgatagtatatatgaagtatcagatatagaaactgaaaatgaagaagaaaatattaatctagataataatgaaacagatgaagaaatataatgtctgaagatgagataaaaataatatctaaagaagattatcaaaatgaagaattatcagactaaaaaattatatttgataatacaatttttgaacaaataaaaggaaaagaattagacttaagtgttgaaaaagtacttgaaatacctactctatgaaattggtttaaaagacaaaaagaagaatattatgtagttagtcaaaaagaacatattatagattgtaaatatgcaagaggaaaaacatatatacctatactaagtaaacgaataataaataaagaaatacaagatataaaagctaaaacaccaataaaatatgtacatttaggaggaacagaaatattaataaaagcttgttttagagaaggaatagatacacctattgaaatatacttagcagatgatagaattatacaccctatagaaaaaagtgtaattagtgcagtaaaaggaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0105F02-ZkMXK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0105F02.1" temp_strand="+" temp_description="C04SLm0105F02.1  CU915709.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0105F02 sequenced_by:sanger upload_account_name:uk">
        <position start="154294" stop="155658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154594" g_stop="155358" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0105F02.1" gen_strand="+" ref_id="SGN-U336736" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0105F02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154594" e_stop="155358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATGTAAAAAAAATTATAAAATTAAAAGACCATATAGACCAAAAAGAAAAATATCTCAATGTACTTGCTATAAATGCGGAGAGGTAGGACATTTAGCTAGAGATTGTAAGTTACCAAAAGACCCAAAAAGGACGAAAATTGCAAAAATAATTATAAATAATGATAAATATATGCAAATAGAATATATAGACTATGAACTAAGTGAAAATGATAGTATATACGAAGTATCAGACATAGAAACAGAAAATGAAGAAGAATATATTAATCTAGATAATGATATAATAGACGAAGAAATATAATGTGTGAAGATGATATAAAAATAATATCCAAAGAAGACTATCAAAATGAAGAATTATCAGACCAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAGTTAGACTTATGTGATGAAAAAGTACTTGAAAAACCTACTGTGAGAAATTGGTTTAAAAGACAAAAGGAAGAATATTATGTAGTTAGTCAGAAAGAACATATTATAAATTGTAAATATGCAAGAGGAAAAGCATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCCAAAAAAACCTATAAAATACGTACTTTTAGGAGGAACAGAAATATTAATAAAAGCTTGTTTTAGAGAAGGAATAGATTCACCTATTGAAATATATTTAGCAGATGATAGAATTATACACCTTATAGAAAAAAGCGTAATAAGTGCAGTAAAAGGAAATTTA</genome_strand>
        <mrna_strand>ATATTATAT-AAAAAAATAATAAAATAAAAAGACCATATAGACCAAAAAGAAAAATATTCCAATGTACTTGTTATAATTGCGGAAAGATAGGACATTTAGCTAGAGATTGTAAACTACCCAAAGATCCGAAAATGAAGCAAATTGCAGAAGTAATTATAGATAATCATAAATATATGCAAATAGAATACATAGACTATGAATTAAGTGAAGACGATAGTATATATGAAGTATCAGATATAGAAACTGAAAATGAAGAAGAAAATATTAATCTAGATAATAATGAAACAGATGAAGAAATATAATGTCTGAAGATGAGATAAAAATAATATCTAAAGAAGATTATCAAAATGAAGAATTATCAGACTAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAATTAGACTTAAGTGTTGAAAAAGTACTTGAAATACCTACTCTATGAAATTGGTTTAAAAGACAAAAAGAAGAATATTATGTAGTTAGTCAAAAAGAACATATTATAGATTGTAAATATGCAAGAGGAAAAACATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAG-CTAAAACACCAATAAAATATGTACATTTAGGAGGAACAGAAATATTAATAAAAGCTTGTTTTAGAGAAGGAATAGATACACCTATTGAAATATACTTAGCAGATGATAGAATTATACACCCTATAGAAAAAAGTGTAATTAGTGCAGTAAAAGGAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>16</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1400" PGL_stop="847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1400" e_stop="847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="1400" e_stop="847" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1400" stop="847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTACTACTAGGGCGGTGACTCCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAGAATGAGAAATTGACACCCCAACCTACCCCAGAAATGATTAATCAGGTTCTTGCCTATCTTAGCGAGATATCTGACCAGGGCCAGACACCTCTACTGCTTTCTGCACCAGCACCTCAGGTTCCGGAGGTACAACATGCAGCTACTATGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGGTTGACTACAGGGCCTATAATGACGAGTGATCAGCACGAACTTTTCAGTAAGCTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTACTATACAAGATGGGTTTAGTAGAACGATTTGGTGTTGAGTTTTTGACCTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCTACGAACATAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  Y  Y  *  G  G  D  S  S  T  N  *  G  S  G  K  R  G  *  G  R  G  E  *  T  S  A  E  *  E  I  D  T  P  T  Y  P  R  N  D  *  S  G  S  C  L  S  *  R  D  I  *  P  G  P  D  T  S  T  A  F  C  T  S  T  S  G  S  G  G  T  T  C  S  Y  Y  G  S  P  H  G  C  L  I  G  N  R  H  I  S  S  V  D  Y  R  A  Y  N  D  E  *  S  A  R  T  F  Q  *  A  L  E  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  T  I  Q  D  G  F  S  R  T  I  W  C  *  V  F  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  I  G  T  T  Y  D  L  G  I  I   </first_frame>
            <second_frame>  P  S  P  S  T  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  E  K  L  T  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  E  I  S  D  Q  G  Q  T  P  L  L  L  S  A  P  A  P  Q  V  P  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  S  D  Q  H  E  L  F  S  K  L  L  K  L  K  P  L  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  Y  K  M  G  L  V  E  R  F  G  V  E  F  L  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  L  R  T  *  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  L  L  G  R  *  L  L  H  Q  L  R  K  W  *  E  R  V  R  K  G  R  M  N  K  C  R  M  R  N  *  H  P  N  L  P  Q  K  *  L  I  R  F  L  P  I  L  A  R  Y  L  T  R  A  R  H  L  Y  C  F  L  H  Q  H  L  R  F  R  R  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  H  F  L  G  *  L  Q  G  L  *  *  R  V  I  S  T  N  F  S  V  S  S  *  S  *  N  L  *  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  Y  Y  T  R  W  V  *  *  N  D  L  V  L  S  F  *  P  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  Y  E  H  R  H  H  L  *  L  G  H  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1399" stop="875"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSTTRAVTPPPTEEVVREGEEGENEQVQNEKLTPQPTPEMINQVLAYLSEISDQGQTPLLLSAPAPQVPEVQHAATMAPRMDASLEIGTFPRLTTGPIMTSDQHELFSKLLKLKPLVFKGAESEDAYDFLVDCHELLYKMGLVERFGVEFLTYQFQGNAKMWWRSHVECLRT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1758" PGL_stop="1474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1758" e_stop="1474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="1758" e_stop="1474" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1758" stop="1474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGACGCGTTTACTTTTCTTTGAGATGCTATAATACTTTAGGAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTACTGCTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGTAGATGGTTAGAACTAGAGCAACGACTGCACCAACACCAACACCGGCAAGGCAAGATGCATCTGAGCCAGCCACTAGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  R  V  Y  F  S  L  R  C  Y  N  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  H  Q  H  Q  H  R  Q  G  K  M  H  L  S  Q  P  L  G  L  * </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  D  A  F  T  F  L  *  D  A  I  I  L  *  E  N  F  I  L  S  F  F  L  S  C  Y  C  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  V  D  G  *  N  *  S  N  D  C  T  N  T  N  T  G  K  A  R  C  I  *  A  S  H  *  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  T  R  L  L  F  F  E  M  L  *  Y  F  R  K  I  S  F  F  L  S  F  F  R  A  T  A  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  *  M  V  R  T  R  A  T  T  A  P  T  P  T  P  A  R  Q  D  A  S  E  P  A  T  R  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1758" stop="1474"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGSLVSSHKNESSRVLRNGRGRVYFSLRCYNTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLHQHQHRQGKMHLSQPLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10887" PGL_stop="8176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10887" e_stop="8176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="10887" e_stop="8176" e_length="2712"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10887" stop="10175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10298" stop="9540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9687" stop="9129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9683" stop="8247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8608" stop="8176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTTACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCCTCATGTTTTTTCTTGCTCTTTGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGGTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATATCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTTAATTGATGATAATCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGTGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCAAATGAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACCACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCTCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCTTGAATTACATCAAAAATTATCCATTTCTAAGATAACCAAATCAACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATATATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTTATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGTTCCAGTTTTCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTATGTTTTGGACAAATCCTCTTAATATGTCCAGTCTCCCCACATCCATAACACTCTTTGGAGTCAAGCATAGGTCTCTCAGAGAGGTGTTGACCAGTCTAAGGTTGACCCCCACTTACAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTCGTGGTGAATTCATCTGGCTTCACTACTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGGCGAATCTGCTCTTGTGGACTGAAACATAGTTGGGTGGCATACCGGGATAATGCACGAAACTTAGCCTCATATGCATTGGCCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAATGTTCGGGGGATATACTTCTCCATAACCAAGCTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAATATGTGACCACCACCAAATTTTGGCATTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGATAATCGTAAGCATCCTCAGATTCCACACCCTTGAAGACAAGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGTAGTCAGACGAGGAAACGTGCCTATTTCCAATGGAACATCCATGCGAGGAGCCGTAGTAGCCGCATGTTGTAACTCTAAAACCGGAGGTGTTGGTGCAGAAAACACTGGAAGTGCCTGACCTTGATCAGAAAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCGTTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACATCCTCCCATGATCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  Y  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  L  M  F  F  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  V  Q  I  W  L  K  N  P  V  H  Q  G  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  S  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  *  L  M  I  I  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  V  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  G  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  L  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  L  N  Y  I  K  N  Y  P  F  L  R  *  P  N  Q  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  Y  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  L  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  F  Q  F  S  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  Y  V  L  D  K  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  S  Q  A  *  V  S  Q  R  G  V  D  Q  S  K  V  D  P  H  L  Q  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  F  L  M  S  M  S  W  *  I  H  L  A  S  L  L  P  P  L  S  R  S  L  P  P  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  G  E  S  A  L  V  D  *  N  I  V  G  W  H  T  G  I  M  H  E  T  *  P  H  M  H  W  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  M  F  G  G  Y  T  S  P  *  P  S  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  Y  V  T  T  T  K  F  W  H  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  D  N  R  K  H  P  Q  I  P  H  P  *  R  Q  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  L  *  S  D  E  E  T  C  L  F  P  M  E  H  P  C  E  E  P  *  *  P  H  V  V  T  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  K  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  R  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  F  F  L  L  F  E  Y  I  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  V  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  S  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  *  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  Q  M  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  S  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  *  I  T  S  K  I  I  H  F  *  D  N  Q  I  N  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  Y  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  F  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  M  F  W  T  N  P  L  N  M  S  S  L  P  T  S  I  T  L  F  G  V  K  H  R  S  L  R  E  V  L  T  S  L  R  L  T  P  T  Y  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  R  G  E  F  I  W  L  H  Y  F  H  L  Y  H  E  V  Y  H  L  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  A  N  L  L  L  W  T  E  T  *  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  I  G  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  C  S  G  D  I  L  L  H  N  Q  A  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  N  F  G  I  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  I  I  V  S  I  L  R  F  H  T  L  E  D  K  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  R  A  Y  F  Q  W  N  I  H  A  R  S  R  S  S  R  M  L  *  L  *  N  R  R  C  W  C  R  K  H  W  K  C  L  T  L  I  R  K  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  V  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  H  P  P  M  I  S  T  T  A  S  C  R  C  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  L  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  P  H  V  F  S  C  S  L  S  I  S  V  Y  H  Q  *  I  R  S  Q  R  G  P  N  M  A  *  K  S  R  S  S  R  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  I  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  L  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  G  M  H  L  V  K  *  S  L  C  S  I  T  L  E  V  V  P  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  P  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  L  E  L  H  Q  K  L  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  I  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  V  P  V  F  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  I  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  R  C  *  P  V  *  G  *  P  P  L  T  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  V  V  N  S  S  G  F  T  T  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  C  S  C  G  L  K  H  S  W  V  A  Y  R  D  N  A  R  N  L  A  S  Y  A  L  A  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  N  V  R  G  I  Y  F  S  I  T  K  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  I  C  D  H  H  Q  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  *  S  *  A  S  S  D  S  T  P  L  K  T  R  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  V  V  A  A  C  C  N  S  K  T  G  G  V  G  A  E  N  T  G  S  A  *  P  *  S  E  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  I  L  P  *  S  L  P  R  P  L  A  A  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9145" stop="8756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDVVVNSSGFTTSTSITKSTTSWKDFAVAATCKAEIRNSDLNPFTKRRICSCGLKHSWVAYRDNARNLASYALADILPCSRLKNSSLFLSLNVRGIYFSITKLENEAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8453" stop="8178"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWKCLTLIRKPTEIGENLIDHLWGRLGWQSLILHLFVFPILPFSYYLLSRWRSHCPSIRWARCSSSSPRGHPPMISTTASCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9455" stop="9201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSFPITSAILVTTITSTTTSSRITASTMTTSTSSHWGSITMFWTNPLNMSSLPTSITLFGVKHRSLREVLTSLRLTPTYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10160" stop="9915"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10691" stop="10494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCFFLLFEYISISSINTITKRSKYGLKIPFIKVMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8654" stop="8460"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQIIVSILRFHTLEDKRFQFQELTEKFMLIICHYRPCSQTRKRAYFQWNIHARSRSSRML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="8870" PGL_stop="10315"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8870" e_stop="9056"/>
            <exon e_start="9802" e_stop="10315"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.914"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="8870" e_stop="9056" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9057" i_stop="9801" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="9802" e_stop="10315" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8870" stop="9056"/>
              <exon start="9802" stop="10315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGCCAATGCATATGAGGCTAAGTTTCGTGCATTATCCCGGTATGCCACCCAACTATGTTTCAGTCCACAAGAGCAGATTCGCCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAGGTGGTAGACTTC : GATGTAATTCAAGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGAGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTGGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTTGACCAAGTGCATCCCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  I  I  P  V  C  H  P  T  M  F  Q  S  T  R  A  D  S  P  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R  G  G  R  L   : R  C  N  S  R  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  *  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  D  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  G  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  G  T  T  S  R  V  I  E  Q  R  L  H  L  T  K  C  I  P  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  A  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  Q  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  Q  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  E  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  *  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  P  M  H  M  R  L  S  F  V  H  Y  P  G  M  P  P  N  Y  V  S  V  H  K  S  R  F  A  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  R  W  *  T  S :   M  *  F  K  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  R  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  *  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  W  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  R  H  N  F  K  S  Y  *  T  K  A  S  F  D  Q  V  H  P  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8871" stop="9056"/>
                    <exon start="9802" stop="10236"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSANAYEAKFRALSRYATQLCFSPQEQIRRFVKGLRSELRISALQVAATAKSFQEVVDFDVIQGMTWLSPQFAILDCNAKTVTLAKPETDPLVWEGDYTSNPVRIISFLRAKKMISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="12368" PGL_stop="12192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12368" e_stop="12192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="12368" e_stop="12192" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12368" stop="12192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATACTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAATTCTATTACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  *  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  Y  L  S  D  S  Y  C  C  R  R  T  L  L  R  V  R  S  Y  P  N  G  H  Q  I  L  L  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  T  *  V  I  A  I  V  V  G  E  L  C  *  G  *  E  A  I  P  M  A  T  K  F  Y  Y  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0105F02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="84179" PGL_stop="84322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84179" e_stop="84322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="84179" e_stop="84322" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84179" stop="84322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323170" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGGACATGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</gDNA_template>
            <first_frame> K  I  S  C  *  L  *  L  F  I  M  F  E  *  C  Y  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  T  C  M  P  R  L  C  H  P  K  V  E  T  G  R  Q  R  R </first_frame>
            <second_frame>  K  S  L  V  N  Y  N  C  L  S  C  L  N  N  V  I  I  T  I  F  R  K  F  A  T  E  I  F  F  G  H  V  C  P  D  Y  A  I  L  R  L  K  P  V  G  R  E   </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  *  I  M  L  *  *  P  S  L  E  S  L  L  Q  K  Y  S  S  D  M  Y  A  Q  T  M  P  S  *  G  *  N  R  *  A  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0105F02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="91833" PGL_stop="93537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="91833" e_stop="92162"/>
            <exon e_start="92233" e_stop="93537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.915"/>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="91833" e_stop="92162" e_length="330"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="92163" i_stop="92232" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="0.904">
            <gDNA_exon_boundary e_start="92233" e_stop="93537" e_length="1305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91833" stop="92162"/>
              <exon start="92233" stop="93497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93252" stop="93537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGATTAGGGGATCGGGTGTCACGAACCGACAC : GTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATAAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACCGACACTTAGATTTAGGGGATCGGGTGTCACGAATCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCAGAGTGTTACGTACCGACATAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTATTATACTCAATCTAATGAACATGATTTCCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAATATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCATGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGGGTGCAGCAAACGTGCCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGAAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTCAACTTCCGGCATGGACTAGTTTCTTATGTATTTTTAGCTTTTAGAATACTATTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAAATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAGTCTTCCGCATTACATTATGTTGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGTGCCCGGATTTAGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCAGCACATAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAAGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCCTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> N  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  I  R  G  S  G  V  T  N  R  H  :  V  E  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  L  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  *  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  C  R  F  R  G  S  G  V  T  N  R  H  L  D  L  G  D  R  V  S  R  I  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  Y  V  P  T  *  E  K  *  R  *  *  I  L  K  D  V  I  I  L  N  L  M  N  M  I  S  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  G  C  S  K  R  A  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  K  I  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  F  N  F  R  H  G  L  V  S  Y  V  F  L  A  F  R  I  L  L  V  *  S  F  D  R  R  C  S  C  G  D  D  F  Q  I  L  G  I  I  I  V  I  D  F  I  N  E  F  K  S  S  A  L  H  Y  V  D  I  I  L  K  C  *  G  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  A  R  I  *  V  V  T  N  L  V  S  E  H  *  V  R  W  S  Q  H  I  R  T  G  L  V  E  S  *  G  T  V  R  G  C  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  L  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </first_frame>
            <second_frame>  I  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  L  G  D  R  V  S  R  T  D  T :   *  N  *  G  I  G  C  H  E  L  T  R  S  I  R  G  S  G  V  T  N  *  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  K  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  S  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  Q  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  L  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  N  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  H  V  L  Y  *  P  L  L  L  C  S  L  L  V  Y  L  W  G  A  A  N  V  P  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  S  T  S  G  M  D  *  F  L  M  Y  F  *  L  L  E  Y  Y  *  F  S  H  L  I  V  D  V  L  V  V  M  T  S  K  F  W  G  *  *  *  L  L  I  L  L  M  S  L  S  L  P  H  Y  I  M  L  I  L  Y  *  N  V  K  V  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  V  P  G  F  R  S  *  Q  T  W  Y  Q  S  I  R  F  V  G  L  S  T  *  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   F  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  D  *  G  I  G  C  H  E  P  T   : R  R  I  R  G  S  G  V  T  N  *  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  M  *  I  *  G  I  G  C  H  E  P  T  L  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  R  V  L  R  T  D  I  R  E  I  K  I  M  N  L  E  R  C  Y  Y  T  Q  S  N  E  H  D  F  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  I  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  M  F  C  T  D  P  Y  F  Y  V  L  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  E  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  Q  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  I  S  L  V  I  *  S  *  M  F  L  W  *  *  L  P  N  F  G  D  N  N  S  Y  *  F  Y  *  *  V  *  V  F  R  I  T  L  C  *  Y  Y  I  E  M  L  R  F  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  C  P  D  L  G  R  D  K  L  G  I  R  A  L  G  S  L  V  S  A  H  K  N  R  S  S  R  V  L  R  N  G  K  G  M  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  P  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  T  T  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92728" stop="93033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVGCSKRAIVFNSTVIQASLTTSKIQGELMLLAWTGSSSSSLDAFNFRHGLVSYVFLAFRILLV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93301" stop="93537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVRGCLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLLRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="95719" PGL_stop="95060"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95719" e_stop="95060"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="95719" e_stop="95060" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95719" stop="95060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGGGGAAGAGGATACTTGTTCTTTATGTTTACCTTGTTTAGTTGTCTGTAGTCTATACGCATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAAACCGGAGCACCCCAAGGGGATGCACTTGGTCTAATGAAGCCCTTGTTCAATAACTCTTGAAGTTATGCCTTTAACTCTCTTAACTCTGCAGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCGCGGACTACCGAAACCGACTCAATCGAAAGTACTTGGGTAGTGTCATCCTTGAGATGTTCCAAGAAAGCTAAAAACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATTATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAGTCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACAAAATCTACATAAGTGTTGTTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  F  M  F  T  L  F  S  C  L  *  S  I  R  I  R  K  L  P  S  F  F  F  T  N  K  N  R  S  T  P  R  G  C  T  W  S  N  E  A  L  V  Q  *  L  L  K  L  C  L  *  L  S  *  L  C  R  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  D  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  A  D  Y  R  N  R  L  N  R  K  Y  L  G  S  V  I  L  E  M  F  Q  E  S  *  K  P  F  T  N  H  F  L  S  M  K  K  G  D  Y  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  R  K  L  W  R  K  S  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  K  I  Y  I  S  V  V  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H </first_frame>
            <second_frame>  Q  C  G  E  E  D  T  C  S  L  C  L  P  C  L  V  V  C  S  L  Y  A  F  E  N  S  H  P  S  S  L  Q  T  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  *  S  Y  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  S  T  W  V  V  S  S  L  R  C  S  K  K  A  K  N  P  L  L  T  I  F  L  A  *  R  K  E  I  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  F  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T   </second_frame>
            <third_frame>   N  A  G  K  R  I  L  V  L  Y  V  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  K  P  E  H  P  K  G  M  H  L  V  *  *  S  P  C  S  I  T  L  E  V  M  P  L  T  L  L  T  L  Q  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  R  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  R  G  L  P  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  K  T  L  Y  *  P  F  S  *  H  E  E  R  R  L  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  V  E  K  V  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  Q  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95511" stop="95302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSKNSRTTETDSIESTWVVSSLRCSKKAKNPLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95533" stop="95333"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCRSHSIRGYRNGACARFKIDTEVNIPIWWHTRKICREHIQKLADYRNRLNRKYLGSVILEMFQES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="97719" PGL_stop="97543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97719" e_stop="97543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="97719" e_stop="97543" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97719" stop="97543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATATCCTCCCATACAATGCTTCAAATGGGGACATATCAATACTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  I  L  P  Y  N  A  S  N  G  D  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  T  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  Y  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0105F02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="99922" PGL_stop="99585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99922" e_stop="99585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="99922" e_stop="99585" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99922" stop="99585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335079" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAAAAGAAATCAATATATATCAAGTAATTTCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCGATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACAATCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCTGATCCCCTAAATATATGTGTCAGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  K  K  S  I  Y  I  K  *  F  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  N  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  *  S  P  K  Y  M  C  Q  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  K  R  N  Q  Y  I  S  S  N  F  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  I  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  I  C  V  S  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  K  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  R  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  Q  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  L  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0105F02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="154594" PGL_stop="155358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="154594" e_stop="155358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="154594" e_stop="155358" e_length="765"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154594" stop="155358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATTATGTAAAAAAAATTATAAAATTAAAAGACCATATAGACCAAAAAGAAAAATATCTCAATGTACTTGCTATAAATGCGGAGAGGTAGGACATTTAGCTAGAGATTGTAAGTTACCAAAAGACCCAAAAAGGACGAAAATTGCAAAAATAATTATAAATAATGATAAATATATGCAAATAGAATATATAGACTATGAACTAAGTGAAAATGATAGTATATACGAAGTATCAGACATAGAAACAGAAAATGAAGAAGAATATATTAATCTAGATAATGATATAATAGACGAAGAAATATAATGTGTGAAGATGATATAAAAATAATATCCAAAGAAGACTATCAAAATGAAGAATTATCAGACCAAAAAATTATATTTGATAATACAATTTTTGAACAAATAAAAGGAAAAGAGTTAGACTTATGTGATGAAAAAGTACTTGAAAAACCTACTGTGAGAAATTGGTTTAAAAGACAAAAGGAAGAATATTATGTAGTTAGTCAGAAAGAACATATTATAAATTGTAAATATGCAAGAGGAAAAGCATATATACCTATACTAAGTAAACGAATAATAAATAAAGAAATACAAGATATAAAAGCCAAAAAAACCTATAAAATACGTACTTTTAGGAGGAACAGAAATATTAATAAAAGCTTGTTTTAGAGAAGGAATAGATTCACCTATTGAAATATATTTAGCAGATGATAGAATTATACACCTTATAGAAAAAAGCGTAATAAGTGCAGTAAAAGGAAATTTA</gDNA_template>
            <first_frame> I  L  C  K  K  N  Y  K  I  K  R  P  Y  R  P  K  R  K  I  S  Q  C  T  C  Y  K  C  G  E  V  G  H  L  A  R  D  C  K  L  P  K  D  P  K  R  T  K  I  A  K  I  I  I  N  N  D  K  Y  M  Q  I  E  Y  I  D  Y  E  L  S  E  N  D  S  I  Y  E  V  S  D  I  E  T  E  N  E  E  E  Y  I  N  L  D  N  D  I  I  D  E  E  I  *  C  V  K  M  I  *  K  *  Y  P  K  K  T  I  K  M  K  N  Y  Q  T  K  K  L  Y  L  I  I  Q  F  L  N  K  *  K  E  K  S  *  T  Y  V  M  K  K  Y  L  K  N  L  L  *  E  I  G  L  K  D  K  R  K  N  I  M  *  L  V  R  K  N  I  L  *  I  V  N  M  Q  E  E  K  H  I  Y  L  Y  *  V  N  E  *  *  I  K  K  Y  K  I  *  K  P  K  K  P  I  K  Y  V  L  L  G  G  T  E  I  L  I  K  A  C  F  R  E  G  I  D  S  P  I  E  I  Y  L  A  D  D  R  I  I  H  L  I  E  K  S  V  I  S  A  V  K  G  N  L </first_frame>
            <second_frame>  Y  Y  V  K  K  I  I  K  L  K  D  H  I  D  Q  K  E  K  Y  L  N  V  L  A  I  N  A  E  R  *  D  I  *  L  E  I  V  S  Y  Q  K  T  Q  K  G  R  K  L  Q  K  *  L  *  I  M  I  N  I  C  K  *  N  I  *  T  M  N  *  V  K  M  I  V  Y  T  K  Y  Q  T  *  K  Q  K  M  K  K  N  I  L  I  *  I  M  I  *  *  T  K  K  Y  N  V  *  R  *  Y  K  N  N  I  Q  R  R  L  S  K  *  R  I  I  R  P  K  N  Y  I  *  *  Y  N  F  *  T  N  K  R  K  R  V  R  L  M  *  *  K  S  T  *  K  T  Y  C  E  K  L  V  *  K  T  K  G  R  I  L  C  S  *  S  E  R  T  Y  Y  K  L  *  I  C  K  R  K  S  I  Y  T  Y  T  K  *  T  N  N  K  *  R  N  T  R  Y  K  S  Q  K  N  L  *  N  T  Y  F  *  E  E  Q  K  Y  *  *  K  L  V  L  E  K  E  *  I  H  L  L  K  Y  I  *  Q  M  I  E  L  Y  T  L  *  K  K  A  *  *  V  Q  *  K  E  I   </second_frame>
            <third_frame>   I  M  *  K  K  L  *  N  *  K  T  I  *  T  K  K  K  N  I  S  M  Y  L  L  *  M  R  R  G  R  T  F  S  *  R  L  *  V  T  K  R  P  K  K  D  E  N  C  K  N  N  Y  K  *  *  *  I  Y  A  N  R  I  Y  R  L  *  T  K  *  K  *  *  Y  I  R  S  I  R  H  R  N  R  K  *  R  R  I  Y  *  S  R  *  *  Y  N  R  R  R  N  I  M  C  E  D  D  I  K  I  I  S  K  E  D  Y  Q  N  E  E  L  S  D  Q  K  I  I  F  D  N  T  I  F  E  Q  I  K  G  K  E  L  D  L  C  D  E  K  V  L  E  K  P  T  V  R  N  W  F  K  R  Q  K  E  E  Y  Y  V  V  S  Q  K  E  H  I  I  N  C  K  Y  A  R  G  K  A  Y  I  P  I  L  S  K  R  I  I  N  K  E  I  Q  D  I  K  A  K  K  T  Y  K  I  R  T  F  R  R  N  R  N  I  N  K  S  L  F  *  R  R  N  R  F  T  Y  *  N  I  F  S  R  *  *  N  Y  T  P  Y  R  K  K  R  N  K  C  S  K  R  K  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="154875" stop="155261"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNRRRNIMCEDDIKIISKEDYQNEELSDQKIIFDNTIFEQIKGKELDLCDEKVLEKPTVRNWFKRQKEEYYVVSQKEHIINCKYARGKAYIPILSKRIINKEIQDIKAKKTYKIRTFRRNRNINKSLF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0105F02.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="154594" stop="154896"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCKKNYKIKRPYRPKRKISQCTCYKCGEVGHLARDCKLPKDPKRTKIAKIIINNDKYMQIEYIDYELSENDSIYEVSDIETENEEEYINLDNDIIDEEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 128 chains have been computed
$ 
$ memory statistics:
$ 547168 bytes spliced alignments in total
$ 16 spliced alignments have been stored
$ 34198 bytes was the average size of a spliced alignment
$ 17352 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1577 bytes was the average size of a predicted gene location
$ 11 megabytes was the average size of the backtrace matrix
$ 173 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 04:08:18
-->
