<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:51:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337543" ref_strand="-" ref_description="SGN-U337543        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to hypothetical protein [Streptomyces sp. KO-3988] (GB:BAD86809.1); contains InterPro domain Protein of unknown function DUF142 (InterPro:IPR003455) | chr5:17166151-17167514 FORWARD | Aliases: MJB21.14, MJB21_14(evalue: 3e-18, score=83.2) genbank/nr: gi|16648883|gb|AAL24293.1| Unknown protein [Arabidopsis thaliana] >gi|21536783|gb|AAM61115.1| unknown [Arabidopsis thaliana] >gi|18422248|ref|NP_568611.1| O-methyltransferase N-terminus domain-containing protein [Arabidopsis thaliana] >gi|58652116|gb|AAW80883.1| At5g42760 [Arabidopsis thaliana] (evalue: 2e-16, score=83.2)">
      <seq>cttcacaacatcagcatgttgcagttgatggctagtattttggggattcaaatctggaatattgtgcatccctggtaatgtttagtttggtatatgtatctagggagatgaaaacctttgcagaatacaaaaactaagcctcagtcccacacaagttggggtcgcataaacggtgtcacagggtatatacagcacaagagatcatttgggaacatcacctacctgctccaagaatgacaacttgtgctcctccgccatcaaaagaagtacgtctcccctgcaagtaactcagctagtggatcatggatcacatgtttccatagcgcccttccagctgcagtttgacatgctgattgtctcaaagaatcccaatcatgttcgacagctgaatgaacttctctgatggtttcagtgtacaaagaatcaggtatggatagtaaaccaacttgcaaacgggtaaaggagtaactcgcccccatttcactccgtcatctctatactcgtcttatcgaatcatcagttttggtaccaattatcattgtgatattttgttcatgcacctaacaccatcatcaaagaggaggtacatctcaacaactggcacatccacatccactaccttaattatggctcaattatatatctatctatacatatattatatgtgtgtgtatatattaaacacatatttatattattaaccatagacctaggaagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="10683" stop="8350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10383" g_stop="10211" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10210" i_stop="9992" i_length="219">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.636" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9991" g_stop="9899" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="266" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9898" i_stop="9780" i_length="119">
            <donor d_prob="0.671" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9779" g_stop="9619" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="427" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9618" i_stop="8944" i_length="675">
            <donor d_prob="0.786" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8943" g_stop="8650" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="721" r_length="294" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U337543" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10383" e_stop="10211"/>
          <exon e_start="9991" e_stop="9899"/>
          <exon e_start="9779" e_stop="9619"/>
          <exon e_start="8943" e_stop="8650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCACAACATCAGCATGTTGCAGTTGATGGCTAGTATTTTGGGGATTCAAATCTGGAATATTGTTGCAT-CCTGGTAATGTTTAGTTTGGTATATGTATCTAGGGAGATGAAAACCTTTGCAGAATACAAAAACTAAGCCTCAGTCCCACACAAGTTGGGGTCGCATAAACGGGTGAGTGGACATTTGATCAGTTCAGTGACTGACTACTAATAATGAGCATATGCATAAGTGATATCAGTATATTGTCACAATTCGATTAGTAAGTTCATTAATTTGTTGTTACGAAGCAGTGCTGAATGACACCCTTACTAAAGTCTGTCTCCGCCCCACTGACTACTATTTACCAAAGATAAACTAGTCAATTTGTCATTAAATATACATTCATTTTAGTGTCACAGGGTATATACAGCACAAGAGATCATTTGGGAACATCACCTACCTGCTCCAAGAATGACAACTTGTGCTCCTCCGCCATCAAAAGAAGTAAGAGCTGCTTCAATTCCCTTATCAAACCATAGTGTCCTTACTGCAATGATAACTCCAGAAATCTCTTTAGCATTGTTGAGGATATCTTTCTTAATCTTCTCATACAATTTTTTCAGGTACGTCTCCCCTGCAAGTAACTCAGCTAGTGGATCATGGATCACATGTTTCCATAGCGCCCTTCCAGCTGCAGTTTGACATGCTGATTGTCTCAAAGAATCCCAATCATGTTCGACAGCTGAATGAACTTCTCTGATGGTTTCAGTGTACAAAGAATCAGGTAGTATAAAATCAGGCAAGCTACCATTTTCTTGATTAGACATTATTATACTGATTTTTAGTGACTACTAATAGAAGAGAAGAACTAAAGGGATAAGCCATGCAATATATACAACAGAAATAAAAGAGTACTGTTGTAGAGGAAAAAGAATTGTTATTAAGGATAAGGAAAGACAGCCACACACACAACCAATGTCTCAGAAAAGTTATTCAATCATATCCAGCTATTCTCTGTGTTAAGTAAATTAAAGGAAGGTAATGAAGCAGGCCACGACTACCATCAATTTTCATCCCTTTGTCCTACTACTCTTTGATTCTTTCCCCCCTCTTAACTATATCTTTAAAAGGTTAGCAATTTTTTTATCCAAAAGTAGCATAAAAAGAACCCCACATGTTAGGATGAGAACAACTCAAAGATACTTTTAACATGATGTGATATTCTCCAAAAAAAACCTTTAACCATTCATTTCGTACACGGACTACATTGTCATGGAATTTTAGTTCTTGGACTAGTTTATCCCATCGTGGAGGTCTGTGTGTTAGATAAGGTGGGATATTCAAGATTAAGCATGAAATTAGATTTATACTGTATTTGGTTGACGATATAAATTGTATGTAGCTTATTTCTCTCGTCATATTTGATGTGGTCCACGGGCTTCCTCTTATACGTTTGCAGGTATGGATAGTAAACCAACTTGCAAACGGGTAAAGGAGTAACTCGCCCCCATTTCACTCCGTCATCTCTATACTCGTCTTATCGAATCATCAGTTTTGGTACCAATTATCATTGTGATATTTTGTTCATGCACCTAACACCATCATCAAAGAGGAGGTACATCTCAACAACTGGCACATCCACATCCACTACCTTAATTATGGCTCAATTATATATCTATCTATACATATATTATATGTGTGTGTATATATTAAACACATATTTATATTATTAACCATAGGCCTAGGAAGTCAG</genome_strand>
        <mrna_strand>CTTCACAACATCAGCATGTTGCAGTTGATGGCTAGTATTTTGGGGATTCAAATCTGGAATATTG-TGCATCCCTGGTAATGTTTAGTTTGGTATATGTATCTAGGGAGATGAAAACCTTTGCAGAATACAAAAACTAAGCCTCAGTCCCACACAAGTTGGGGTCGCATAAACGG...........................................................................................................................................................................................................................TGTCACAGGGTATATACAGCACAAGAGATCATTTGGGAACATCACCTACCTGCTCCAAGAATGACAACTTGTGCTCCTCCGCCATCAAAAGAA.......................................................................................................................GTACGTCTCCCCTGCAAGTAACTCAGCTAGTGGATCATGGATCACATGTTTCCATAGCGCCCTTCCAGCTGCAGTTTGACATGCTGATTGTCTCAAAGAATCCCAATCATGTTCGACAGCTGAATGAACTTCTCTGATGGTTTCAGTGTACAAAGAATCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGATAGTAAACCAACTTGCAAACGGGTAAAGGAGTAACTCGCCCCCATTTCACTCCGTCATCTCTATACTCGTCTTATCGAATCATCAGTTTTGGTACCAATTATCATTGTGATATTTTGTTCATGCACCTAACACCATCATCAAAGAGGAGGTACATCTCAACAACTGGCACATCCACATCCACTACCTTAATTATGGCTCAATTATATATCTATCTATACATATATTATATGTGTGTGTATATATTAAACACATATTTATATTATTAACCATAGACCTAGGAAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337542" ref_strand="+" ref_description="SGN-U337542        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to hypothetical protein [Streptomyces sp. KO-3988] (GB:BAD86809.1); contains InterPro domain Protein of unknown function DUF142 (InterPro:IPR003455) | chr5:17166151-17167514 FORWARD | Aliases: MJB21.14, MJB21_14(evalue: 1e-80, score=296) genbank/nr: gi|16648883|gb|AAL24293.1| Unknown protein [Arabidopsis thaliana] >gi|21536783|gb|AAM61115.1| unknown [Arabidopsis thaliana] >gi|18422248|ref|NP_568611.1| O-methyltransferase N-terminus domain-containing protein [Arabidopsis thaliana] >gi|58652116|gb|AAW80883.1| At5g42760 [Arabidopsis thaliana] (evalue: 8e-79, score=296)">
      <seq>atgtctaatcaagaaaatggtagcttgcctgattttatactacctgattctttgtacactgaaaccatcagagaagttcattcagctgtcgaacatgattgggattctttgagacaatcagcatgtcaaactgcagctggaagggcgctatggaaacatgtgatccatgatccactagctgagttacttgcaggggagacgtacctgaaaaaattgtatgagaagattaagaaagatatcctcaacaatgctaaagagatttctggagttatcattgcagtaaggacactatggtttgataagggaattgaagcagctcttacttcttttgatggcggaggagcacaagttgtcattcttggagcaggtatggatacaagggcatatcgcttgagttgcttgaaagacagcaacatatttgaggttgattttccagaggtcttgcagatgaaaaccactattgtagaggcagcagcagaaacaacagatgaacaaaagcaccaactaatgatggcaaaatcattgaacagagtggcagcggacctgagagaaaagaactggcttgaaaagcttcaagaatcaggcttaactctaaatacgaatacagtgtgggtattagagggaattctctactatctttctcactcaaatgcaatggaagtactaaagattatagcaaataactgtacctctgctcatacagtactcttagcggacttcatgaacaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="9276" stop="11321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9576" g_stop="9942" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9943" i_stop="10657" i_length="715">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10658" g_stop="11022" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="732" r_length="365" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U337542" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9576" e_stop="9942"/>
          <exon e_start="10658" e_stop="11022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTAATCAAGAAAATGGTAGCTTGCCTGATTTTATACTACCTGATTCTTTGTACACTGAAACCATCAGAGAAGTTCATTCAGCTGTCGAACATGATTGGGATTCTTTGAGACAATCAGCATGTCAAACTGCAGCTGGAAGGGCGCTATGGAAACATGTGATCCATGATCCACTAGCTGAGTTACTTGCAGGGGAGACGTACCTGAAAAAATTGTATGAGAAGATTAAGAAAGATATCCTCAACAATGCTAAAGAGATTTCTGGAGTTATCATTGCAGTAAGGACACTATGGTTTGATAAGGGAATTGAAGCAGCTCTTACTTCTTTTGATGGCGGAGGAGCACAAGTTGTCATTCTTGGAGCAGGTAGGTGATGTTCCCAAATGATCTCTTGTGCTGTATATACCCTGTGACACTAAAATGAATGTATATTTAATGACAAATTGACTAGTTTATCTTTGGTAAATAGTAGTCAGTGGGGCGGAGACAGACTTTAGTAAGGGTGTCATTCAGCACTGCTTCGTAACAACAAATTAATGAACTTACTAATCGAATTGTGACAATATACTGATATCACTTATGCATATGCTCATTATTAGTAGTCAGTCACTGAACTGATCAAATGTCCACTCACCCGTTTATGCGACCCCAACTTGTGTGGGACTGAGGCTTAGTTTTTGTATTCTGCAAAGGTTTTCATCTCCCTAGATACATATACCAAACTAAACATTACCAGGATGCAACAATATTCCAGATTTGAATCCCCAAAATACTAGCCATCAACTGCAACATGCTGATGTTGTGAAGTGACATATAGTCTTTCAGTGAAAACACAGTCGTTCCATTTAGGAGCAACTATGACTATGTTTGGATAAAAGATGATAAGCGGAATGTAATTTAATTCCTCTGAGTTATGGGCTCAACATGGAGATTGAACACTGAATGGACATAGATTGTCCACCACAAGAGACTCCTCATATTTCACCTAGCATTTTTATTGCTCACCCCTCGGAAGCTAGTTGATTCCATTTAGCAAAAAATGTTACAGAGTAAACAAATGATGTCTGTTCTTTATCTGCAGGTATGGATACAAGGGCATATCGCTTGAGTTGCTTGAAAGACAGCAACATATTTGAGGTTGATTTTCCAGAGGTCTTGCAGATGAAAACCACTATTGTAGAGGCAGCAGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAA</genome_strand>
        <mrna_strand>ATGTCTAATCAAGAAAATGGTAGCTTGCCTGATTTTATACTACCTGATTCTTTGTACACTGAAACCATCAGAGAAGTTCATTCAGCTGTCGAACATGATTGGGATTCTTTGAGACAATCAGCATGTCAAACTGCAGCTGGAAGGGCGCTATGGAAACATGTGATCCATGATCCACTAGCTGAGTTACTTGCAGGGGAGACGTACCTGAAAAAATTGTATGAGAAGATTAAGAAAGATATCCTCAACAATGCTAAAGAGATTTCTGGAGTTATCATTGCAGTAAGGACACTATGGTTTGATAAGGGAATTGAAGCAGCTCTTACTTCTTTTGATGGCGGAGGAGCACAAGTTGTCATTCTTGGAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGATACAAGGGCATATCGCTTGAGTTGCTTGAAAGACAGCAACATATTTGAGGTTGATTTTCCAGAGGTCTTGCAGATGAAAACCACTATTGTAGAGGCAGCAGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337541" ref_strand="+" ref_description="SGN-U337541        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to hypothetical protein [Streptomyces sp. KO-3988] (GB:BAD86809.1); contains InterPro domain Protein of unknown function DUF142 (InterPro:IPR003455) | chr5:17166151-17167514 FORWARD | Aliases: MJB21.14, MJB21_14(evalue: 5e-35, score=144) genbank/nr: gi|16648883|gb|AAL24293.1| Unknown protein [Arabidopsis thaliana] >gi|21536783|gb|AAM61115.1| unknown [Arabidopsis thaliana] >gi|18422248|ref|NP_568611.1| O-methyltransferase N-terminus domain-containing protein [Arabidopsis thaliana] >gi|58652116|gb|AAW80883.1| At5g42760 [Arabidopsis thaliana] (evalue: 3e-33, score=144)">
      <seq>ctgaagcaaatacaacctacaacatggggttccatctgggtgagtttgaagtgacctgggcaagttgcgcaacttgttgaacaaatttagtgggtcatgcaacaacccgaaatgtgcatctgggtcaccaatttgagaaagtttaacatcagaaaatcctagtgatggcaataactcatcaggatagtcgctatagaaatggaaatttgagctggacattgtggttgattgcttgttcatgaagtccgctaagagtactgtatgagcagaggtccgctgccactctgttcaatgattttgccatcattagttggtgcttttgttcatctgttgtttctgctgctgcctctacaatagtggttttcatctgcaagacctctggaaaatcaacctcaaatatgttgctgtctttcaagcaactcaagcgatatgcccttgtatccatacctgcagataaagaacagacatcattggtttactctgtaacattttttgctaaatggaatcaactagcttccgaggggtgagcaataaaaatgctaggtgaaatatgaggagtctcttgtggtggacaatctatgtccattcagtgttcaatctccatgttgagcccataactcagaggaattaaattacattccgcttatcatcttttatccaaacatagtcatagttgctcctaaatggaacgactgtgttttcactgaaagactatatgtcacttcacaacatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="11550" stop="10070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11250" g_stop="10980" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10979" i_stop="10834" i_length="146">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.170" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10833" g_stop="10370" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="735" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U337541" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11250" e_stop="10980"/>
          <exon e_start="10833" e_stop="10370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAGGTACAGTTATTTGCTATAATCTTTAGTACTTCCATTGCATTTGAGTGAGAAAGATAGTAGAGAATTCCCTCTAATACCCACACTGTATTCGTATTTAGAGTTAAGCCTGATTCTTGAAGCTTTTCAAGCCAGTTCTTTTCTCTCAGGTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTTGTATCCATACCTGCAGATAAAGAACAGACATCATTTGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTATCCAAACATAGTCATAGTTGCTCCTAAATGGAACGACTGTGTTTTCACTGAAAGACTATATGTCACTTCACAACATCAG</genome_strand>
        <mrna_strand>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTTGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAG..................................................................................................................................................GTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTTGTATCCATACCTGCAGATAAAGAACAGACATCATTGGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTATCCAAACATAGTCATAGTTGCTCCTAAATGGAACGACTGTGTTTTCACTGAAAGACTATATGTCACTTCACAACATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337540" ref_strand="+" ref_description="SGN-U337540        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|560556|gb|AAB31223.1| influenza virus hemagglutinin 5' epitope tag [synthetic construct](evalue: 5e-06, score=55.1)">
      <seq>ttgtatccatacctgcagataaagaacagacatcattggtttactctgtaacattttttgctaaatggaatcaactagcttccgaggggtgagcaataaaaatgctaggtgaaatatgaggagtctcttgtggtggacaatctatgtccattcagtgttcaatctccatgttgagcccataactcaaaggaattaaattacattccgcttatcatctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="10969" stop="10149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10669" g_stop="10449" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U337540" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10669" e_stop="10449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTATCCATACCTGCAGATAAAGAACAGACATCATTTGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTA</genome_strand>
        <mrna_strand>TTGTATCCATACCTGCAGATAAAGAACAGACATCATTGGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAAAGGAATTAAATTACATTCCGCTTATCATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322149" ref_strand="+" ref_description="SGN-U322149        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to hypothetical protein [Streptomyces sp. KO-3988] (GB:BAD86809.1); contains InterPro domain Protein of unknown function DUF142 (InterPro:IPR003455) | chr5:17166151-17167514 FORWARD | Aliases: MJB21.14, MJB21_14(evalue: 2e-59, score=224) genbank/nr: gi|16648883|gb|AAL24293.1| Unknown protein [Arabidopsis thaliana] >gi|21536783|gb|AAM61115.1| unknown [Arabidopsis thaliana] >gi|18422248|ref|NP_568611.1| O-methyltransferase N-terminus domain-containing protein [Arabidopsis thaliana] >gi|58652116|gb|AAW80883.1| At5g42760 [Arabidopsis thaliana] (evalue: 1e-57, score=224)">
      <seq>tttttttttttaagctctaacagcaagttagactttattggtgaaccattcttataatattcacaaaatagtcttgtttggtggttctccagaagcctgaagcaaatacaacctacaacatggggttccatctgggtgagtttgaagtgacctgggcaagttgcgcaacttgttgaacaaatttagtgggtcatgcaacaacccgaaatgtgcatctgggtcaccaatttgagaaagtttaacatcagaaaatcctattgatggcaataactcatcaggatagtcgctatagaaatggaaatttgagctggacattgtggttgattgcttgttcatgaagtccgctaagagtactgtatgagcagaggtacagttatttgctataatctttagtacttccattgcatttgagtgagaaagatagtagagaattccctctaatacccacactgtattcgtatttagagttaagcctgattcttgaagcttttcaagccagttcttttctctcaggtccgctgccactctgttcaatgattttgccatcattagttggtgcttttgttcatctgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="11639" stop="10471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11346" g_stop="10771" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U322149" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11346" e_stop="10771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGTGCTTCTAAGCTCTAACAGCAAGTTAGACTTTATTGGTGAACCATTCTTATAATATTCACAAAATAGTCTTGTTTGGTGGTTCTCCAGAAGCCTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAGGTACAGTTATTTGCTATAATCTTTAGTACTTCCATTGCATTTGAGTGAGAAAGATAGTAGAGAATTCCCTCTAATACCCACACTGTATTCGTATTTAGAGTTAAGCCTGATTCTTGAAGCTTTTCAAGCCAGTTCTTTTCTCTCAGGTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTAAGCTCTAACAGCAAGTTAGACTTTATTGGTGAACCATTCTTATAATATTCACAAAATAGTCTTGTTTGGTGGTTCTCCAGAAGCCTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTTGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTATTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAGGTACAGTTATTTGCTATAATCTTTAGTACTTCCATTGCATTTGAGTGAGAAAGATAGTAGAGAATTCCCTCTAATACCCACACTGTATTCGTATTTAGAGTTAAGCCTGATTCTTGAAGCTTTTCAAGCCAGTTCTTTTCTCTCAGGTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323364" ref_strand="+" ref_description="SGN-U323364        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:17166762-17168907 REVERSE | Aliases: None(evalue: 3e-54, score=208) genbank/nr: gi|21594358|gb|AAM65999.1| unknown [Arabidopsis thaliana](evalue: 1e-52, score=209)">
      <seq>accaataccgttgcgtttcaaccaccatgaccccgctgagtatcacccttatcccttcctccaccgtgcctccgacgcccctgaaacctccgccatcggtgaaacaaccgccgcctacgccgccgatcgaagcaaagtttttcagccgtagaaacgccgtcgtttggctctcactcattgctcctctaactcatcctgcctccgctttgtccttcggcatatcaggaccaaaagaatggctgagagatcagaagaagaagactgcgaagtaccttttggctccaatcgaggcttctagaaacatcctccgatatgctaatctcttacttactagaactgaaccagagtttggtgaaaaggaacttgaagaagttcagagcttattgaggtctgctgcaagggattgtgtgcctcaagagaggaattccttcgttcagtttcaatcaaaatcaggagttgaggtttgcacattccagctggttgtgaaaaatgcttcttctttgcttcctgacaaggacccggtaaagttagcagctgaagccaaacttatcgatctcataaggtcttttgcttctctcagtgacatggcaaatgaatttgatgtgcaagttgcttctaatagacaaaaggttgcaaatgctctcatggatacactgacctgtctggacaactttgagcaaggtggtcaggaatgccttgaaagttgattatccttattcaagtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="14917" stop="12153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14617" g_stop="14396" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14312" g_stop="14205" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="330" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14110" g_stop="13980" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="461" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13363" g_stop="13263" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="562" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12807" g_stop="12748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="622" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12556" g_stop="12453" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="726" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U323364" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14617" e_stop="14396"/>
          <exon e_start="14312" e_stop="14205"/>
          <exon e_start="14110" e_stop="13980"/>
          <exon e_start="13363" e_stop="13263"/>
          <exon e_start="12807" e_stop="12748"/>
          <exon e_start="12556" e_stop="12453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATATGTATTTACTTATCTCGAGTTTTTTTTAAGTTGAAATTAAACATAGTCTAACTGAATTGTTTTGGTTTGCGAAAATGTTCTCAGCAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTAGTAATAACATACTGTGTATTTTGAAATAACCTCTTTTTTTTATTTTTTATAATACTGTTATGGTGAGATGAATCAGTTGCTTTGTATTTGACAGCTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAGGTTTGAATTTTGACTTATGATTGAATCATAATTTACCAGCTTCTTGTTGATTTTGATGGCATTTTTAATGACATTTTAACAAGTGAGTACTTATTTGAGTTAAATTGCTAATGTACTTATTTCTAAGCCAAGTGCACTAGTGGTTTGACTTCGCGTATTGAGAGTTTTGCTAAGCATAGCCAGTCTCGAGAGGGTGTGGTAGGTTGATGGATAATGCAAAAATAATCAACAGCGAAAAATGATCTAATTATGTAATTGAATTGAGTTGCATTTATACCGTATACGGATGATTCATATGCCCGATCTCAATTGTTATAGTTGATTGATTGAGTGTATAAGTGGTGTGGACATGTTACTAGTTTCTATTACATATATATATATATATATATATATATATATATATATATATATATATATATATATTCTAGATTTTGTTCTATGGTGATGCAATTTTTTAGAGTGGCGTGTTACATAGGGAGATGAGAAGCTGTGGAAACAAAAGTAAATATTTAAGCAAAAAAGAGTAGTTAGGATTCACTCTATTTTTTGGTTCTTATATCTTTTTGACCTATGTGTGTGTTGTTTGTGGCTCATATGAAAAATTCCTAATTTTCAGGTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAGGTAGCTAGTAAAACTTGTTGTGACCGATATATCTTGTATGTCGAGCTATAAACACTTCAAGAAGTAGGTTGATCTCTGTACATTTAAGGTGGAGTTGTCTTATCTGTTCATTAGCCGATGTTCTAGAAAATGTTTTTGTTATAGTAGCTTGGTTTTTGTCCACATATCGAAGCAACTAATCTTACCTTCAGTACCTGCTGGTGGCTAAAAAATCTGGGTTGGGAAATTTCATATTACGTGTTACCATAGAACTATCCTTATTAGGTACTGATTTAGTTTCTAAAAGGATATGGAAAGAGCGTACATTCATTGCCTATTTTCCATATTTCACGTGCTCTGGAGACATTAAAATTCGGTCTTGAGTTATCACAATGACTCATCTATGCATGCATGTGTTGGAGGGATTTGACATAAATTATTTGTCACAATGCTTTCTGTATTTCTTGTGGGTGCAGGTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAGGTATAATTAGTGATATGCAACAATTTCTATTTGTACTCTTCTCAAAACTTGTGTTGATTTATTTTAAGCAAAATTTTACATTTTATAAGACTGATAAACATGATAACAAGCTAGATATTTCATGTTTGATTCTTCCTTTATCTTTTGATCATACCGTCTTATGGCATGAACATGCTATTTTTTTTAAACAGACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAGCAAGGTGTCAAGGAATGCCTTGAAGTTTGATTATCCTTATTCAAGTCAA</genome_strand>
        <mrna_strand>ACCAATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTGTCCTTCGGCATAT...................................................................................CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA..............................................................................................CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAG...............................................................................................................................................................................................ACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAGCAAGGTGGTCAGGAATGCCTTGAAAGTTGATTATCCTTATTCAAGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345833" ref_strand="+" ref_description="SGN-U345833        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 5' nucleotidase family protein, contains Pfam profile: PF05761 5' nucleotidase family | chr1:28227530-28232636 FORWARD | Aliases: F22H5.7, F22H5_7(evalue: 7e-49, score=191) genbank/nr: gi|10092279|gb|AAG12692.1| cytosolic IMP-GMP specific 5'-nucleotidase, putative; 41097-37373 [Arabidopsis thaliana] (evalue: 5e-47, score=191)">
      <seq>ttcagttattgagaattcagcgtgatcacattgaagatgaaatacaccatcttaagtggtctctcaagtctgaagaaactgatgatgccagcaaggagatgttttcggagcttcacaagctgcagtccaaaggtgaggaggtcaggctcagtcatcagcaggcacaacgagaatgtcaccaaaagttccacaaggtctggggacaactaatgaagactggttatcagaattctcgttttgcacatcaggtggaaagatttgcttgcctttataccagtcaagtcacaaacttgagcctgtattccccggataagtactataggcctagtgaggattttatgcctcatgaatttggtatcctctctatttgaggggatcttgtaatccaggggccaaaggcagtgcattttgaagaagagctttgctcattctaatttacattccgagttaccaacatggaaaatctttatgttttgtggtataataacttaaattgtatcatatttgtttgtgctgtctcatatatgcacttatctgattgtgaatttgaattatataaaacaactagaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="35281" stop="37555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35581" g_stop="35647" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35648" i_stop="36188" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36189" g_stop="36246" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="125" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36247" i_stop="36444" i_length="198">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36445" g_stop="36504" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36505" i_stop="36796" i_length="292">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36797" g_stop="36859" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36860" i_stop="36929" i_length="70">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36930" g_stop="37255" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U345833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35581" e_stop="35647"/>
          <exon e_start="36189" e_stop="36246"/>
          <exon e_start="36445" e_stop="36504"/>
          <exon e_start="36797" e_stop="36859"/>
          <exon e_start="36930" e_stop="37255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAAGTAATTATTATCTCCATTTCATTTTTTATTGTAGAACTCATATGTGCATGAGTTATATTTCGGTGTGCATTTTATCTGTGCAACTGTTTCATGTTGAGTCCCTTCAGCAAAGGAAGTACTAGGATAAAAGAATTAAGGAAAATAAAGAAACAAAATCAAGTTTGCTGGAGAATTCATACAGCCGACTTCAGCTTATTTAAAATTGAGGTTTAGTTGATTCAGTGATTGGTTGAAGGTGGGTAGGAGGATGAGAAAGAATTAGAGCCTTTATTTATGAGTATAGACTTTCAGCCTTTTTGGGACTTTATATATGTCAGTGTGGAGTAGTCTTGTCAGCGAGCAGTTACAAATTTCCTTCAAGTGGAGAAATTATTGAACATTTTATTGTGCATCTTAAACAAAGATATTCGTTGTTCGTCGAACCATTGAGACAGTGAATACTCATACATTATGTTAATATAATTTTTCCATCATCTGAATTTGGCTGAAGGTAAAACTTTTGTCGTTGTCGATCATTTCATGAGCTGTCATTATGCTTCAGGTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAGGTTGGTTATTTCAAGATAGTATCAGTAGGAAGATAGTTTTCAATGTTACAAGAGAAAACAATTTTATATTTGGTCATTCTCTACATTGATACTTGTTACCTGTAGAATCAAATGTACTTGATCGCATTGAAGTGAATAGGTAATGACTTCTGTTATGAGGTTCAACTAATCTGGTGTTTTGATGGTGTCATTTTATAGTCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAGGTACGAGTGTTAAAGAGAGAATTTCCTCTAAATGTGGGATTATTTCTTTAGAGAACAGTTCATCCTTTTTCGGGAACAAGCTTTAGTGAAAGCTATTTAAAAATAACATGCATGTATAATACACAATTATACTTCCTTTAAACTTTGTAAAGTCAATGGATATATCCGTAACTTTATTCCCTTGGTTATATTTGACACTAACATGGTGTACAGTATTAACAAATCGATTTGGATTTTCAACAAGAGAAGTAGTGTACTTTTTTCTTTCTGATGAACTCATTAAACGTTTCAGTTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAGGTACGATTGAATAATTGCAAAGTATATATCCTGCTCTTTGTGAGTGTGATCTTTACTTGTCGATTCACAGGTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</genome_strand>
        <mrna_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG......................................................................................................................................................................................................TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG....................................................................................................................................................................................................................................................................................................TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG......................................................................GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331707" ref_strand="+" ref_description="SGN-U331707        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | Maf family protein, contains Pfam domain PF02545: Maf-like protein | chr5:17169295-17171706 FORWARD | Aliases: MJB21.15, MJB21_15(evalue: 3e-68, score=254) genbank/nr: gi|42568283|ref|NP_199091.2| Maf family protein [Arabidopsis thaliana] (evalue: 3e-66, score=254)">
      <seq>ggcgattggcggccaatcggccgaattggtaagttgtaaaaaccgggtcagggcaattgacccatttcaaatagtaacatttccttgtgtaaaattctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtctgcagatattgatgagaaagctatccggaaagaaaagcctgaagatttagttatggctcttgctgaggcaaaggcagaagccatcataccaagggtttcaattggagaatccgaaggggatgccgagccaacacttctaattacgtgtgatcaagtggtggtctatgaaggtgtgatcagggaaaaaccatccagtgaagcagaagcacgtcagttcatgaaagattacgccaatggacatgcagcaaccgtgagttctgttcttgtcacgaacctgacaacaggaagtagaagaggagagtgggacaaagtcgagatttatttccacgacataccagatcaagtcatagataaactgattgaggaagggatagttctttatgcagctggtggcttgataattgaacatcctctcgttttgccttatattaaggaagtggttggctcgactgatagcgtgatgggtctcccaaaagctctcaccgaaagacttataaaggaggttctttagtatgactatgatcctgctgctacctgaatgagttcgcgatctataattttgatatacgctattggagctgaaattatcattgattgttggcactggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="47715" stop="42522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47408" g_stop="47271" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="170" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47270" i_stop="47162" i_length="109">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47161" g_stop="47090" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="242" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47089" i_stop="46346" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46345" g_stop="46271" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="317" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46270" i_stop="45072" i_length="1199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45071" g_stop="44991" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="398" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44990" i_stop="44325" i_length="666">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44324" g_stop="44255" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="468" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44254" i_stop="44180" i_length="75">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44179" g_stop="44088" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="560" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="44087" i_stop="43386" i_length="702">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43385" g_stop="43344" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="602" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43343" i_stop="43253" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43252" g_stop="43172" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="683" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43171" i_stop="42994" i_length="178">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="42993" g_stop="42822" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="855" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U331707" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47408" e_stop="47271"/>
          <exon e_start="47161" e_stop="47090"/>
          <exon e_start="46345" e_stop="46271"/>
          <exon e_start="45071" e_stop="44991"/>
          <exon e_start="44324" e_stop="44255"/>
          <exon e_start="44179" e_stop="44088"/>
          <exon e_start="43385" e_stop="43344"/>
          <exon e_start="43252" e_stop="43172"/>
          <exon e_start="42993" e_stop="42822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATGGTAAATATCTAATTACTTATCAATTAGTTGTTGTTCTGTATGCATATATGATTGAATAAGTTCCTGCTCAAAGTCATTCTAATTGATATATGGTTAATAAGTAATAGATTGATTCAGATACTTATTTGTTTGTAGCAATATCGTTAAGTGATAATGAGTTGGTGTCACTGAGCTTAAATCAAATTATGAAGATCCATAATGTATATATACATTGAATAATAAATGTTTGATTTAGTAGATTAAAAATGTAAGAACATGTAAAGATACTAACAAGTAACACATTAAGGAGCTACTCAAACATCACTAATTAGGACATGAAGTTAATCTGAGTTTCGACATTAGCACCCGAACTCAACAGGTTAGGTTTATTATTATAGAATTAATTTCAAAAGCAAGTGTCAGCTTTTGTATGTAGAAGAATAAGAGATGCAAATTTTACAACATAATTCCATCATCGAACTAAAGCAGCAATTGGTTATTATGATATATTATTTGAATCAATGCCAAAAGCGTGACTACCACTGACCATCACCCCCAAGTCTCAAATAGTCGAGAGCAACACATTCTTGGGCCTTTAGGTGCTTGTTGTTGTTATTATTGCTAGGTGCTATAATTCTATATAAACGACACATATCATGTTTGGTGCTTTCACTGAATGTTAGATAAACAGAGATTCATATAGGATCCCCAACTCGATTGAGTTTTATTGGTGGATTAACAGCTTAGCATGTTCTTGTAATATAGTCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAGGTTTGTTTTCTTAAGAACTAGTGCTAGTCCACACATCTCTGAACATATTTTTGAAGTCATTTACTGCTTTGAAATTGCTGGGGGTTTATTCATTTTTCATTTACTGTCATACATGACACCGTTGTGATTTTTTCTTGTTTGTGGCATTCGTTTTTGATTTATGAATCACTCTATGCAATTTGTGATGCTTTTCTTTTAGAGTGTCTTGTAGTGATTTCAACCGTAATCTTAATTTTGGTGTTGATGTTATTTGTAAAATTGCTCTATTACCTATCTTGTTGTGATAGTGTATCTGATTTTTTGGCAAATCATTTAGCTAGCGTGTAGACGTAGATTTGGTTGAAACTTGAATTAAAAAGTTTTTGAACTTGTGTTGAAAAATAAATTTTGGAATGTTAAAGTTGAGTTAGCTTGCATTTTTCTTGAAAAGAGTTGAAGTTTGTGAGTGGAAGAAACTGTTTAGCCAAAAATCTGTCCCCGAATTTGATTTTTTCTTCAAAAACTGATCAAATACCATCAACAAACAAGGGGAAAAAGGGCATCCCAATGCTCAAAGCATCCTACATTCACGCAGGGTCCAGTGATGTTTTCGATTTTTCTTTTAAAATCTATGTCCAAACGGGAGCTTAGATTCTATTCCTCGTCTAGTTGAGTTCTTCACACTGCTTCATAGTATAATTGAAGCCTTGTTTTGAAATGCTTATCTTAATTCCATGAAATTGCATTCTGTGTCAGGCCGATGCTATCATATCAAAATTTCGAAAAACTGAAAACCCTGAGAAGGTTCTCAATCCAACAATTCTGGTTGCAGCTGACACAGTATGTCTTGCCTCTTTTGCCTTTTCAATCTCCCCGCCAAAAGTTATTTTTCTGTCTTCTATTTGATGAAATGAGACCTATAATATGTTATTTCTGCCCGCGATTTTGAATGATAATAAAATTGTCTGCCTTTTATTGTATTGTTTTTCTTGCTTTTATGCTTTGTACCGGTCCTTTTCTGTGTTTGCTTTTTTTCTTTCAAAATGATTCAATTTCTTGTTGGGATATTGGAGGATAATTGTGATGTCCACAAGCTTGCATAATTTTACAGTTTTTCTTTTTTCACATGATAAATTCTTTGCATTTATTGGACTTTGCTATATAGTTTCAAAGCATACATCATAATTGGCATTAACCTGAATAGCTGGAACTATAATCAGGCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAAGTATACATAATTTCTGTTCTTCTCATCGTTTACGGTTAAATATCCGTTATTGACTTACTATAATGTTTTTTACCATTACATCATCTTTGTTTTCATTTCGTTTTTCCCCCAGCTAAAAATTACTATGTTACTTGAGGTGTTTGGTTCAAATATAATACCTGTCTCATCTTCTTTTGAGCGTAAAGTGGTGCCTTTTCAAATAGCTAATCTAAATTATACAATCCTTCATTCCTTCTGCATGAATTGATAACAATATTTCACAGAGATAATACTATCTTCCTTCAAAGTCCATTGTCAAGATTTGACTAGTGTAGAGCACTCAACGGTGTGACGTAGTGGTCAATGAAGTGGGGAGAACTATGAGGTATCATGTCAAATCCCAACCCCAACTCCAATGTAGGAAAAAATACTAGGTGATTTCTTCGTATCTTCCTAACCCTTAGTGGGTAGATTTATCCATTACCTGTGCGGGTGGGAGATGGAAAGTATAGTGGAATTGTCGAGGCGCACACAAGCTGGCCAAGCACCACTATCATTAGAAAAAAAAGGAAGAAGATCTGATTGGTGTTTAGACATGTACTCCCAGTATTCTCTGTTTTCTGCCATTTATTAATGTGTGCGCTTTTCTATGTTAATGATCTTATCCTAACTTGAAATGGTCTGGAGGTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAGGTTTACCATTGCTTTAATCAATTTCTTACTATATTAGTTTTATAATTCTGCTAGTCTTACGCTGTCAACTTCCAGATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAGGTACCTCTGTTGATTTCTCTCATTTTCAATTATCAAATGGGTCTCTATGGCTTTTTAGTTTTAGTTTTTTTCAATGGGTTTGTGTCTACTTCCTATCTCAAATTGTTGCAATGCATACCTCTTATTCTAAATCTTGATAAATAATAGTTTTAAAAAGTTCGGCAGTGATGAATGACTTCTACGCGTTGGGTAGGCTTATTGGATACTTCACAAGGTTCCAATTCCCTATAGCCATTCAATAGAAAAGTTATGCAGGGATGATTTGGTGGAGAGTAGAAGTTGGGTGGAATTGGAATTACGTATTTGGATTTGTGGACTGAAGAAAAAATCGACAACTCCTGAAATGATGTTGAAATATTGATGACACTCTACAAATTTCTCTTTCCCACATATTCAATACCACATTCTTAGGTTCTCAAGATTATTACATCTAAAAGCACCTATTGTCTAATGATCCTGGGAAATGTTGTCCTACGCTCGACTTAGCTTAATCAAGTGTTTTAAGCATGATACCGGAAAGCACAAACGAGTGGTAGATGGACCTATTGAGTTTCTTCTTCAACAATTCATTCAGATGTCCACAATATTTGCCTAGTCAAATGTGTACACGAACTGCTTGAGCCTTGAGATGTTCAGCATAATCGCTTTTGTTTTTATTTTTCACTCATCTAGGAAGAGTAATAACATTTCTTTTGATTGCAGATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTGGTATAACTTTCATCTGAATTGTTAGTTATTGATCATATCAAATGATGGATGCTGTACTTGTTGTCTTACGTTCTTTATTTTTCTTGATCAGATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTGGTAAGTGTTACACCACCACCTCTCTCTCTAATGTCACCCAACGTAAATCATAGTCGTGATGGTGTTACACATTTGTTTGTTTGACCCTTTGCCTTTATAGAGACCTAAACTTTTAGTACTTGTTAAAGTTCATCTGATATCGAAAATTCTGCATAATATTAATACCACATTTGGGCAGGTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</genome_strand>
        <mrna_strand>TTGTAAAAACCGGGTCAGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCG-AAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG...........................................................................ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGTAGAAGAGGAGAGTGGGACAAAGTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG...........................................................................................ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG..................................................................................................................................................................................GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTGCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTGGCACTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320020" ref_strand="+" ref_description="SGN-U320020        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | very-long-chain fatty acid condensing enzyme, putative, similar to GB:AAD37122 from (Arabidopsis thaliana) | chr1:6728975-6730922 FORWARD | Aliases: F18O14.21, F18O14_21(evalue: 0, score=897) genbank/nr: gi|15223556|ref|NP_173376.1| very-long-chain fatty acid condensing enzyme (CUT1), putative [Arabidopsis thaliana] gi|25402889|pir||F86327 protein F18O14.21 [imported] - Arabidopsis thaliana gi|8778420|gb|AAF79428.1| F18O14.21 [Arabidopsis thaliana](evalue: 0, score=897)">
      <seq>ggctgcaggaattcggcacgacgcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataagcatatcaagccttacattccagatttcaagttggcctttgatcatttctgcatacacgctggtggaagggctgttattgacgagctggaaaagaatttacagctgacacaggttcacgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaacatctattcatgactgagcttatgagtagtggattcaagttgctaacacgcactgttatttctcactgttagtgaaatgattccattaatggcatgttcatcttgggttcaagtaaggttttctttaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="53262" stop="55877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53569" g_stop="55563" g_length="1995"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="2018" r_length="1995" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U320020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1995</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53569" e_stop="55563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATG</genome_strand>
        <mrna_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330810" ref_strand="+" ref_description="SGN-U330810        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G75220.1 | Symbol: None | integral membrane protein, putative, strong similarity to integral membrane protein GI:1209756 from (Beta vulgaris); contains Pfam profile PF00083: major facilitator superfamily protein | chr1:28232851-28236492 REVERSE | Aliases: F22H5.6, F22H5_6 (evalue: 0, score=704) genbank/nr: gi|15222158|ref|NP_177658.1| integral membrane protein, putative [Arabidopsis thaliana] gi|25308944|pir||E96782 hypothetical protein F22H5.6 [imported] - Arabidopsis thaliana gi|10092276|gb|AAG12689.1| integral membrane protein, putative; 33518-36712 [Arabidopsis thaliana] gi|15724240|gb|AAL06513.1| At1g75220/F22H5_6 [Arabidopsis thaliana] gi|21700861|gb|AAM70554.1| At1g75220/F22H5_6 [Arabidopsis thaliana](evalue: 0, score=704)">
      <seq>ggctaattccagtattttcaacaacttcatttttcttgatctgtagttcaaatttcaagaactatagagaaaaggggttgactcaaaatttgaagaaaaaaaaatgagtttcagagaagagaacaatgaaggggatctgaaaaagccatttttacatactgggagttggtatcgtatggggtcaagacagtctagtatgatgggttcttctcaagctattcgtgatagttctatttctgttcttgcttgtgttctcatagttgctttgggcccaatccagtttggtttcacttgtggctacacttcaccaacgcaaattgcaattaccaaagatctgaagctcactgtttctgagttctctttgttcggttctttatccaatgtgggtgctatggttggtgcaatatctagtggtcaaatttctgagtacattgggcgaaaagggtctttaatgatagctgctataccaaatatcattggttggcttgccatctcatttgccaaagatccttcttttctatacatgggaagattgttggagggctttggtgtgggaataatctcttatgtggttcctgtatatattgctgagattgcacctcagaatatgagagggggtctagggtctgttaaccagctctctgttacaattgggatcatgttgtcctatttactgggactttttgttaattggaggctgcttgctgttcttggagcattaccttgcctagcactgatacctggactatttttcatccccgaatctcctcggtggttggccaaaatgggtttaacagaagattttgaaacttcgttgcaagttcttcgaggctttgaggctgatattaccaatgaagtaaatgaaattaagaggtctgtagcatcatcaacaaaccgaagaacagcaatgcgttttgcggatctcaaacatagaagatattggtttcctctcatggtaggaattggactacttatcctgcaacagttaggaggaatcaacggtgttatattctattccagcaacattttcctatctgccggtatttcgtcaagtaatgctgcaacttttggtgtcggtgctatacaggttgttgcaactgcagtttctacatggctggtggacagaactggacgtagaattttattaattgtttcctcggctggaatggctgttagtcttcttattgtctccgttgccttctatctaaagggttatgtatctgaggattctaccctctatggtgtcttgggaatagtgtccgtagttggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcaatttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattcaatttaaaataaagtgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="63718" stop="57303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63419" g_stop="63128" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63127" i_stop="62141" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62140" g_stop="62078" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="355" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62077" i_stop="61999" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61998" g_stop="61909" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61908" i_stop="61808" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="61807" g_stop="61748" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="61747" i_stop="61645" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="61644" g_stop="61579" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="61578" i_stop="61479" i_length="100">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="61478" g_stop="61413" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="61412" i_stop="61321" i_length="92">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="61320" g_stop="61245" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="61244" i_stop="60572" i_length="673">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="60571" g_stop="60507" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="778" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="60506" i_stop="60418" i_length="89">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="60417" g_stop="60326" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="871" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="60325" i_stop="60218" i_length="108">
            <donor d_prob="0.862" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="60217" g_stop="60134" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="955" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="60133" i_stop="60048" i_length="86">
            <donor d_prob="0.025" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="60047" g_stop="59963" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1040" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="59962" i_stop="59371" i_length="592">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="59370" g_stop="59324" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1087" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="59323" i_stop="59174" i_length="150">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="59173" g_stop="59111" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="59110" i_stop="59030" i_length="81">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="59029" g_stop="58970" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1210" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="58969" i_stop="58875" i_length="95">
            <donor d_prob="0.512" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="58874" g_stop="58809" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="58808" i_stop="58715" i_length="94">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="58714" g_stop="58655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1336" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="58654" i_stop="58360" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="58359" g_stop="58245" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1337" r_stop="1451" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="58244" i_stop="57966" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="57965" g_stop="57612" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1452" r_stop="1805" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1806" polyA_stop="1825"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U330810" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1804</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63419" e_stop="63128"/>
          <exon e_start="62140" e_stop="62078"/>
          <exon e_start="61998" e_stop="61909"/>
          <exon e_start="61807" e_stop="61748"/>
          <exon e_start="61644" e_stop="61579"/>
          <exon e_start="61478" e_stop="61413"/>
          <exon e_start="61320" e_stop="61245"/>
          <exon e_start="60571" e_stop="60507"/>
          <exon e_start="60417" e_stop="60326"/>
          <exon e_start="60217" e_stop="60134"/>
          <exon e_start="60047" e_stop="59963"/>
          <exon e_start="59370" e_stop="59324"/>
          <exon e_start="59173" e_stop="59111"/>
          <exon e_start="59029" e_stop="58970"/>
          <exon e_start="58874" e_stop="58809"/>
          <exon e_start="58714" e_stop="58655"/>
          <exon e_start="58359" e_stop="58245"/>
          <exon e_start="57965" e_stop="57612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACTGTAATTTCTCATTTCTCATTCAACTTCTTTACTTTGCTTTGTTTTTATGTATATGTATGTTTATCTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGAGAGTTTTTTGGGATAAAAATGGAGTCTTTAGCTTGTTTTGTTGTGGTAAAGGATTCATAATTGGGGTTGATGAGGTGATAACCAATTCAATATTGATCACATGTCTGTTTATTTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGATAAAGTTTTTTGAAAAAAAATGAAGTCTTAAGCCTCCTTTGATATGATGAATGATTCATAATTGGGGTTGATGAGGTGGTAAACAATTCAATATTGACCATATGTATGTTTACCTGCCTATTATCCTGTTAGAAGCTTCAAGTTTGATGAGAAAAGATAGTTTTTTGGAATAAAAATGAAGTCTTTAGTCTCTTTTGTTGTTGTAAAGGATTCACAGTTGGGGTAAGAGGTTGCATATATTGTTGGGATTTACAATATGTTATGCCATTCAGATTTTTCTGGTGGATGACGTAACAATTCAATATTGACTACATGTTTGTTTACCTTTCCAATAACCTATGAGAAATTTCAAGAGTTGATTTCTCATATGGTCAATCAATAGAAAGTCATTTGTTTTATTGAAAAAAATTGTGAATCAAGAAGAGAAGGACTTATTGAGATTATAACTATTGTTGAGTGACCATATGAGAATTTACATGAAACTTCATATTTGATTGAAGAGGATAAGTTTGAATAAAAATAGGCTTAAGCTTCTTCATTTTTGTGGTTAAGGGATCAAAAGTGGTATTAAAAAAATGTAGCATCTTTATTCAGATTACAGTTTGTCATGTCATTCTTATTGTGCCTGCAGTTTATTGGCTGCTTACACGATTTATGTTGCTGCAACAAATATTTGCATATATATCTCTATTGATCAGGTGTTTGTTTTTGTTGCATTTGAAGTGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAGGTCTGCAAGAGTCATTCTTGATTTATATCTAATTTAAGTTTGTTTCAGAGCCATTGTTGACTAAAGATAATCTTTTCAGTTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGGGTAAGATTATTGCATTAAAAATGATGTCTAGTTTTTTCATTTACCATATTTCTGTGTATTGCTGAAGTGGATGCTCAAATCCTTTTTTTTTCCTACTGCAGTCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAAGTAAGATATTCTACCTGAAGTATATTATATGGTGCCTCGATAATCTACATTGACATGTATGTGCTTATATCTCCCTTCCTTTGGCCTTACCAATATGTTTCAGGATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTGGTAATGTTCAATTTCTTAAATCTTCTCTGGTTACAGTGATTGACTACACCGAAATTCTCAAAACTAAATGCTTTCGCTTCCTGCTTTTTGGTGTTTTTAGGTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAGGTTCGCGGAGTTATAGACTTATTTTTCGTTAAAACCAAAGTTTGCTATGCCTGCTTAATCAATCACATGCTATCATTTGTTTCTTAATGTAGCTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTGGTAATGATCATTTCTCTTGAAAACTCTTGTTAAGCTACAATTTACAGTTATGAAGTCATAAATCATTTTTTACTCTACTGAATAACATTTAGTGCATAAATAATAAACTAGTCAATTAAGTTGAAGTGATAGCTTTTCATTTTGTGAGGACTGAGAATAGTTATTGAGTTCTTCTTTGGCTGATATCTGCACAGCTTCTCTTTATTCTTGTAGATTTACGTTGTCAAGCGTAAGCGCTTTCCTGCTCCCTGACTTAAGACTTGTGTTTTGTTAGTTGAGCAGTATTTCTGTTTTAAAATGACATTCCTTTTCTTCTTAATGACGGTGTTGGTGGGGGCAGTTTGGGTACCTACTGCCTCCCACCAACACATGTAACGTATAACTTTTCCAACCAAGGCTTAGGAGATGGGACGTAACGACATCGAGTTTCTTTTGCCTCTGTTGGGATTGAACCTGAGACCTCATGGTTCTTCTCCTACTTCATTGACCACTAGTCCACATCACTGTGCTTCCAAAATGACAGTCTTCATTCGCATAATTTTATAAAAAAAATATTTTTCCTTTTGTGCTTTTGGTGGAGAGGGCTATGTGTCTTCTTCTTCTTCTTCTTACACTTACATAAGAGTTTCCGGATTGAATTTTGAAAGAGCTGGTATATTATTTTCTTTTATAGGAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTGGTGAGCTTCATTATATATATATTTCTTTGTGTAATTCTTCAAGGCTTTGATTGCTGTTTGTCTCAGTTGAGTTTCTATCATAAATATAGGCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGA-GCTGATATTACCAATGAAGTAAATGAAATTAAGGTAAATTGTATGAAAGACTATATAAAGCAAGCCTTGTTGCCACACATGAAATTCGGTATAAAACTTGTTGTTAAATTTGTATTTATTTTATGTTATTTTTGCGTATAGAGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATGGTATTTTGACGTTTCATGCTGTTATTGGAGCCTTCGTGTTAGTTATGCCCTTGTTTCGTCAATCTTCTAATTTTTCATTCTTTTAGGTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCGGTACGGATTAAACAAACAGTTGCAACTTGTCATCTTAAATGATGGATGTGTCAGTAGCATTTGCCTTCTTCAAAAGAAGTGTCATTTTCAGCCTGTCATGTAGCATCTACCTTTTTGTTATGATCCATTGCTGGCAAAATTGAATTGCATTATAATTTTGCCTCAAGAGAACCCCTGAAACAAACTAATTGATTAAGATTGATACACGAGTTATTTAAATGGCATAATACATAAACAAACACTCAAATATGGCCCCAACTGGCAAGTACGCACTCCAACTTTGAGAGTATACATCTAGACACCTCACCTGGCATCTAAACACTCCAACTTGTCCTCATTGTCTGGTGGACACCTGACACTAATGTCGCACATAAAGTTAGAAGTGTCTAGATTGTACGTTTGAGTTCAACTGACATGGCGGAGACGAGTTGAGATGTCTAGATGTGGATACTCAAAGTTGGAGTGTTTAGTTGTTAGTTTAGACCAAGTTAAAGTGTCTATCTATGTATTATGTCTATTTAAATCTATAATGATCTATGACTTTCTTCGTGTAATATAAGTCTTCACTAATTTAGTCATCTAAACTTCACAGGTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAGGTCCAGCTTTTGCTATTTTAGTTTCTCTTCTTTAACTTTCAAGTATGCATATTATTTAGGATGGAAGGTGAAAAGGTTTCGATTTCTGTGTAGCACTTGCTTGCATTACTTTTGTGCTGTCAAATTTCATCAATGTCCTTCAATGTGCAGGTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATTGTAAGTTTTAAAAAGTCATGACGTATATGTAGATTGTTCTAATTTTTGTGCTAACTTATTAAAGCAAATGCTCTTTTGTAGGTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</genome_strand>
        <mrna_strand>GGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG...............................................................................TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG.....................................................................................................TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA.......................................................................................................GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG....................................................................................................GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG............................................................................................CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG.........................................................................................GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG............................................................................................................AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG......................................................................................GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG......................................................................................................................................................GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT.................................................................................GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341421" ref_strand="+" ref_description="SGN-U341421        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttctaatgttagtttacagcagcagatattgtcaatgcagcagcagcaacaacaacaacatcagcagttcttggatcctattaatgggattcttaatgttgggagctaagtgatttaagggtctaaggatgcgaacaaccaagctaaataatttaaggggctaaggatgcaaaccaagcttaagtatgaatctggtggaatttaagagcttgctaattggaaaagagcgggtccaatgaagacacactaagttatgcctttcatattctcaacatgtactgcacacgtttattccatctacgtttatattaaaattttgtgtatacacattcttgaaataaaggttgaaaaatgaaacataaaagtattgaagtgaaaatctttcttatttggttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="71093" stop="73423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71393" g_stop="71494" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71495" i_stop="72828" i_length="1334">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72829" g_stop="73122" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="396" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="406"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U341421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71393" e_stop="71494"/>
          <exon e_start="72829" e_stop="73122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGGGTATGTTTCTCTTTCGTGTCTAGTTTACCATTAATCGTTCAGTAATTGTCATGTATCTTTCCAGAGTTTTTCCATGTATGTTCATTGCATTTTCAATAGTATGTAATGATGGTTATCGGTAGGGGAAAGTTAGTCGATTACTCTCAGGTAAAACATGTCATGCAATAGTTTAGTTACAGAGTGGTTCGGTTAACCTCAATGTAGTAATACTTCGTTAGTGAAAAGCCTGAAAATGAAAAGAAAAGAAAAAAGTAAGGAAAGCAGTTGCTCTTCATCTAAATATCCTGAATATGATTGTCCTATCTTCAAAAACTCTTGAGTTTGTCTTTTTCCAAACTGTCCGCCATTTGCAAGCAGGAACCAATCTCCACGCTTTCTTGTCTAACTCTACCTCCCAAACTGTTCTAGCTCTTAGGAAGATCCACAGTGCTTGCAGGAACCACTCTCGATTATTTGATCCCCACCAAATTAAGAAAGAGCTGTCACAATTGATAAGTAAAAGAACAATGAAGAAACAAATGGCTATTAGTTTCTGTGTTAGACTCAGAGAACAAACATATGGAACATAACTGGAATCCTCTTCTTCTCAACCTTTCTTGAGTCAAAGCTGCCTTTCTAGATACCAACCAGGTGAAAAACAGAACCTTTGGACTTTGGAGGGGCATTATAAAATTATATGGCCAATCAATATTCTGATAAGCTTAATTTGTGATTGCTAAATTGGCAAACATGACTGTGAAAGTCCCATCTTTGCTTGGATTCCAATAGAATTTGTCCGCTGCTTCTGATAGCCCCTAAAGCTCCTCCAAAGTTTTAAAGAACTCTACTGCTCCTTTAATGATATCTGATGGATCTTCACATCCCTACTCCATCAGGACTGTTAACAGGATCTGTGTACCAAATCCCTTCCTGACTATTTGTCAAGAATTACCCTTCTCCATTAACTGTCCTCTTCCTTAGTTTACCTCCATATCCATTTCATCCGTCGACATGTATTTTGAACATTTATGTCCTTAATTACCAGACCCCTTTTTCAATTTCAAAACTTCCTCCAAACTAGTTCAGGGCTGAGCTTTGTCAAACCTTTTCTGGTTTAAGGTGCTAGTTTGTAATATTATATTACCATGTCAACCAAAAAAGAAAAAGAGGTGCTACTTACTCTAATCCCTTTGAGCTAAATAACTTTGCCATGACTTTCAGTGACTCCAATATCATGCCTATAATTATGGAAGTATTAACTATGTTCTTAATTCTAATGAGCAAGTAAGCATTTCTTTTCCCAATGAAGTTGTAATGCAAAAGTAAACACCATTGATTGAATTTCCCATATTCAGGAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</genome_strand>
        <mrna_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327997" ref_strand="+" ref_description="SGN-U327997        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G20480.1 | Symbol: None | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP:Q9S725 from Arabidopsis thaliana and SP:P17814 from Oryza sativa; contains Pfam AMP-binding enzyme domain PF00501 | chr1:7094250-7097104 REVERSE | Aliases: F5M15.29, F5M15_29 (evalue: 7e-05, score=43.9) genbank/nr: unknown(evalue: 5e-65, score=249)">
      <seq>tttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcacatccctctctaactcaacaagtgttcaacgccacgcttaanaacaaggcgggaaaatgctatgttcaaacaggggataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="75170" stop="76377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75470" g_stop="76077" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U327997" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75470" e_stop="76077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</genome_strand>
        <mrna_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAANAACAAGGCGGGAAAATGCTATGTTCAAACAGGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330701" ref_strand="+" ref_description="SGN-U330701        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger homeobox family protein / ZF-HD homeobox family protein | chr1:4938873-4940690 REVERSE | Aliases: None(evalue: 4e-08, score=53.1) genbank/nr: transcription(evalue: 4e-06, score=53.1)">
      <seq>atgctgaagtacaaagattttgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaacccttcttctgctaaaaaaaatataatacaagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="79028" stop="78074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78728" g_stop="78375" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="381"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U330701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78728" e_stop="78375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345590" ref_strand="+" ref_description="SGN-U345590        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cccatcctcctttcattacttcaatttcacacccacccacataacattagacatagggttagggtttctttttttttttttttaaattaacaaaaaaaaaaaaatcatggcattaggtggtggtaatgaggaaaaagagatgagaatttcaggttttcaaaatatagatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="80660" stop="79888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80360" g_stop="80188" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U345590" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80360" e_stop="80188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCCTCCTTTCATTTCTTCAATTTCACACCCCCCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</genome_strand>
        <mrna_strand>CCCATCCTCCTTTCATTACTTCAATTTCACACCCACCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331953" ref_strand="+" ref_description="SGN-U331953        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CBS domain-containing protein, contains Pfam profile PF00571: CBS domain | chr5:3428892-3430471 REVERSE | Aliases: T30N20.130, T30N20_130(evalue: 4e-17, score=53.5) genbank/nr: gi|34913008|ref|NP_917851.1| P0663E10.18 [Oryza sativa (japonica cultivar-group)] gi|20161820|dbj|BAB90735.1| P0663E10.18 [Oryza sativa (japonica cultivar-group)](evalue: 3e-20, score=75.9)">
      <seq>ttggctaatatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaatcaatgattcacacgatattaactcaattttttaaggggagagttcatcaaggtagcttgctacttgggctctcgtgtgtcgcctatgcgttgcactactgcatgggcctggcacaccccaccaaatctacttcaaatcttttggttgatatattgtgtaatgtaatctaattcaaatctttcggttgatatattgtgtaatgtgttcttattatgtttatacatacttatatttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtattgttgtggctttgctaatattgtttttcagtagtaatctcctttgatgaattgattgagttgcttcacttctccagtttgttgatccaccactgctttgacaatatccgccacagaaatcatgcctactaccttcccatcgatcactggaacatgtcgtatgtggtgctctgtgatcataaaacgttccatcacatttccatagtgcattaagcatcagtaacttcgcgagttagaactaatacttaccactcatgagctgcattgcttgaagaatgtttgtgtccgatgtgacggttatcagcttgctctgttgcaatggtagtactaatatttgagcacaaaacagaagacagatgaaaaaaagataaagccaggaagaccgatatctatagagtacctgctcggtcataatatctccgactcttgtgtatttagatgatctatcctgtacaattacctttcgcaaataatctgtacgtctcttgtacaatgtgcatagatgaataagttcaacattgtgtgtattactaaagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="91872" stop="93447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92172" g_stop="93148" g_length="977"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="977" r_length="977" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U331953" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>977</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92172" e_stop="93148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</genome_strand>
        <mrna_strand>TTGGCTAATATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313896" ref_strand="+" ref_description="SGN-U313896        Tomato 200607 #1 [59 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:6763906-6764944 FORWARD | Aliases: F18O14.29, F18O14_29(evalue: 1e-15, score=80.5) genbank/nr: gi|50919532|ref|XP_470153.1| unknown protein [Oryza sativa] >gi|18855056|gb|AAL79748.1| unknown protein [Oryza sativa] >gi|15042820|gb|AAK82443.1| unknown protein [Oryza sativa] (evalue: 3e-15, score=85.1)">
      <seq>tgaaattaattaactgtgtgttaagtttaattaagaagttaattagcaacaaaaagagataattatgggttctcttatggcaggttgggactctcctgtttctgatcctcaagctatgaaattacgaacaaataagtcattaacaaagaaagagatagatgcatattggagatcaaaaaaactaattgaagaagagcatcaaaaatatatctctacgttatcccctcgaagccaaaaacaggcgaatattgtatttgaggaggcaactaaaacagcggaagaaagtctttctaatttggaaaatgaggaaagtttggatcaactaatcaggaaaaatggatggtggataagtagcaattgggcacatttaaatgagccaccagtagaagtacgagaaggtccagcttacaaatacgtgtcacaatttcacgtagccaacatggctactgggtccaacactaaacccggtccagccggaatcaacgcttgaaccgtcgtttggctttagaccggtttgctaataagtactagtatagtactttttttaggttaattttaatttttttttatgacaaattacttttaattttatttgcgaaagtatttgtatttgagttgatatttagagtttgcgttaagagatgtcgatacttgtaatgttgggacatacatacatgtcgttgtaatatattttttgtgctttcttcgataaaagttaaagtatattaatattttgatgtgatatatttttttctgcaaattttataaaatttaatttgtagaaggtaaaaaaaaaaaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="103305" stop="105417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103605" g_stop="103720" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103826" g_stop="103950" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="241" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104055" g_stop="104155" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="342" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104670" g_stop="105116" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="789" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="816"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U313896" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103605" e_stop="103720"/>
          <exon e_start="103826" e_stop="103950"/>
          <exon e_start="104055" e_stop="104155"/>
          <exon e_start="104670" e_stop="105116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTAGTAAGTTCATTTTAGTCTTAATTTCTTTAATTAATGACAAATAATATAAGTTCTTTTATAATTTGTTTAATTGTTTTTTTTTCTTTTTTTGGATTTAATTTACAGTGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAGGTATACATAGACGGATTTAGAATTTTAAATTATTATAATTATTAAGTTCCGTCGAATTCGTAATATTATGATAATTAATTTTTGATTGTTTTAATTGGAGACAGGCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATGGTAATTAATTTATGAAAAAAATAATTAAAGATATATTTTATTTTATCACAATTTCTAAATTTTTAATCATTTAAATAGAATTTCAAAAATCTTCTCTCGATTCATCCCTCTCTACCCCCAGTTACATCTTTCACCTATGTATCTAGGTGTATGCTAAAATATTTCGAATATCTTATACCGAGCTTTCTAGTGCATCCTCTCGAACGTATGTATCTTTATGTCTTCAACTGTATTCGTAAGTCCAGTAATATATCTGAAATTATAAATTTTAAGAAATTTTTTGTAATATGAAAAAGATTAGAAAAATACTGCAATTGGCTTTTAAAACTATGAAATTTAGACGAGTTAATGATCTTTATTAGTAGTAAGTAGCAAGTTTGACTCCTGGTTTAATTATAGAAAAGATCGGGTTTTTTTTTATAGTATATTTAATTAAATGAATTTATTTTAGTTGATTGATTAAAAAATAATAATATATTCATTTATTTATAAAAAAATATTTTTTTAATTGCAGGTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTTTTCTGCAAATTTTATAAAATTTAATTTGTAGAATGTAA</genome_strand>
        <mrna_strand>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA.........................................................................................................TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG........................................................................................................GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTTTTCTGCAAATTTTATAAAATTTAATTTGTAGAAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343981" ref_strand="+" ref_description="SGN-U343981        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttgttctctccatgtaaatcaagattttttttaatttcattgttaatctttatattattgtaggatcgaatttattttgtggcataactcaacgaagaaggctcttgaatgttagtttgccaaaagggatgtcggataagagtaacaaaaattgtgcattgattatacattattatttttatgtattttcttatgattaaggtcctaaggaactaagaaagatagatgtgttgtgtgttctctccatgtaactcaagattatttttttaatttcattggtaatatttataaatattattattattataggatcacattcatcttttagcataactagatgaagaagacttttaaatgttgattagtctgtcgaaaaggatgttggacaaaagttcaaaaaaactgtgcatcgatctatatttcaatttttcatttattttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="111481" stop="110440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111181" g_stop="110740" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U343981" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111181" e_stop="110740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTCTCCATGTAAATTAAGATTTTTTTT-ATTTCATTGTTAATCTTTCTATTATTGTAGGATCGAAATTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGGATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTTATTTTATTGTTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTCGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCAAAAAGGATGTAGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTTTATTTTTCATTTATTTTCTT</genome_strand>
        <mrna_strand>TTGTTCTCTCCATGTAAATCAAGATTTTTTTTAATTTCATTGTTAATCTTTATATTATTGTAGGATCGAATTTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGAATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTAATTTCATTGGTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTAGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCGAAAAGGATGTTGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTCAATTTTTCATTTATTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330286" ref_strand="+" ref_description="SGN-U330286        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. | chr1:28255622-28257280 FORWARD | Aliases: F22H5.17, F22H5_17, P3(evalue: 5e-127, score=451) genbank/nr: gi|7578895|gb|AAF64174.1| phenylcoumaran benzylic ether reductase homolog Fi1 [Forsythia x intermedia](evalue: 2e-142, score=508)">
      <seq>ggtacacaaaacaacacaactaaattcttgagaaagttctttaattttcaaatcaaaatctgttttaagttttatttttatcaaatggctgagaaaagcaaagttttgattattggaggaacagggtatattggtaaatttgtagttgaagctagtgcaaaatctggacacccaacttttgctttagttagagagaccacagtttctgatcctgataagggcaaaattgttgaaaatttcaagaatttgggtgtcactattattaatggtgatttgtatgatcatgagagtttgctgaaggctataaaacaagtggatgtggtgatatcaactgttggtgcaatgcaattggctgatcaagttaagattattgatgctattaaagaagctggcaatattaagaggttcttcccttcggagtttggtatggatgtcgataagatcaatgctgtggagccagcaaagtctacatttgctgtgaaagttcaaatccgaagagctattgaggctgcagaaattccctatactaatgtctcatgtaactattttgctggttatttcttaccaactttggtccagccaggagtcactgctcctcctcgagacaaagtcatcattcccggagatggaaatgttaaggctgtattcaatgaagaacatgatattggcacctacaccattaaggctattgatgacccgagaacgttgaacaagaccctttacatcaggcctctcaagaacaccttatcgttcaacgagcttgtggctatatgggagaaactgattggtaaaactctcgagaaaatctacgttccagaggagcaaattctcaaagacatccagacatctccaataccaatcaatatcatactagcaatcaaccactcaacattcgtgaagggtgatcaaaccaattttgagatagagccatcgtttggggtagaggcctcggaactttatccagatgttaagtacactacagtggaggagtaccttggccactttgtctaaaccacacctttgaggtctccgatcgttcaaataaactgttagatgatgagtgttatcagacattttatatggaagtatgagtacttgttcactatgtcatcggagacacgttgaatggtatgtttttaagtctgtttttagtgtccacactgtgtagtactataatgaagctacagaaaatggattgttgcattgttgctctaccatcttgtacaagttttaaggtgtgatgtaatatgcaaaagcttgttgtcaataaggatcaatcaaagaggactctatttcagttttcttatcgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="111799" stop="114446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112098" g_stop="112364" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112365" i_stop="112455" i_length="91">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112456" g_stop="112590" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="402" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112591" i_stop="113058" i_length="468">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.581" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113059" g_stop="113296" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="640" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113297" i_stop="113393" i_length="97">
            <donor d_prob="0.651" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113394" g_stop="113597" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="844" r_length="204" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="113598" i_stop="113680" i_length="83">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="113681" g_stop="114151" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="1315" r_length="471" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1316" polyA_stop="1326"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U330286" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1315</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112098" e_stop="112364"/>
          <exon e_start="112456" e_stop="112590"/>
          <exon e_start="113059" e_stop="113296"/>
          <exon e_start="113394" e_stop="113597"/>
          <exon e_start="113681" e_stop="114151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACACAAAACAACACAACTAAATTCTTGAGAAAGTTCTTTAATTTTCAAATCAAAATCTCTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAATGTATGTGTATATTATATGGTGTATTTGTTAATAAATTTTGTATATGCAAGTATATTTTAGTTTCTTTGTTGTTTTTTTTTTAAAAAAACAGGGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAGGTTAGTTGCTTCTTGTTTTTTTTGGGTAACGAGGTTGAACTGGTTAAACTTGGGACAGAGGGGATGATGGTGATCTTGAATATAGTAATTGTTGATAAAGTTCTTGAATTTATAGATCATATTTTAATTAGAGAATTTGGAGTATCAAAGGGATCTTAAATCTATGTTGGTCGGATTCTTCAATAATGTTGATGGTTGCCTGTTGGATCGTCCAAAAGTAGTGTAGTGTTGGAGAATCCAACATAGGTGTAACAACATATTTGGAGAGTTTGAGCAACATAGCGTTGATTAAAGGCATAAAATGAGTTAGATTACTTATTGTTTAATATGGCCAAGTGTATGACAGAAGTATGCATCAACTTTGTGTAAATGTTTCAATTTTTACAAGAACATTTCACTGGAGAATCTGAAAATGATTAAGATAATGTGTTCACAGAGCTAAATCATCTTATGCTAAAACAATTTCAGAGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGGGTACGTTGAAAAGAAATCCTTAGGAAGCGTGCCAACAGAACAAGTTACATGACAAAATGTTTCATTTTTGTTTACTTTTTGTTCTGTTTGTCTGCAGCTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGAGTCAGTAATCTTTATATCATTCATCTGTTTCTTTCAATTTAAACATACGTAATCCTGACAATCTATATTGCATACTGTTGCAGCATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATCTGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAAGCTACAGAAAATGGATTGTTGCATTGTTGCTCTACCATCTTGTACAAGTTTTAAGGTGTGATGTAATATGCAAAAGCTTGTTGTCAATAAGGATCAATCAAAGAGGACTCTATTTCAGTTTTCTTATGAATTCAG</genome_strand>
        <mrna_strand>GGTACACAAAACAACACAACTAAATTCTTGAGAAAGTTCTTTAATTTTCAAATCAAAATCTGTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAAT...........................................................................................GGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGG.................................................................................................CTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGA...................................................................................CATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATATGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAAGCTACAGAAAATGGATTGTTGCATTGTTGCTCTACCATCTTGTACAAGTTTTAAGGTGTGATGTAATATGCAAAAGCTTGTTGTCAATAAGGATCAATCAAAGAGGACTCTATTTCAGTTTTCTTATCGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316689" ref_strand="+" ref_description="SGN-U316689        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: None | bacterial transferase hexapeptide repeat-containing protein, contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) | chr1:17323048-17325924 REVERSE | Aliases: F8G22.2, F8G22_2(evalue: 3e-125, score=445) genbank/nr: gi|15220153|ref|NP_175159.1| transferase hexapeptide repeat family [Arabidopsis thaliana] gi|25405192|pir||D96513 unknown protein, 6976-8939 [imported] - Arabidopsis thaliana gi|12325399|gb|AAG52641.1| unknown protein; 6976-8939 [Arabidopsis thaliana] gi|15028353|gb|AAK76653.1| unknown protein [Arabidopsis thaliana] gi|21280965|gb|AAM44984.1| unknown protein [Arabidopsis thaliana](evalue: 3e-123, score=445)">
      <seq>aggcatgtggtattcactattctgccctaccaattactctgtggaaagccttcatttctcactcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaagcatttatgtttagcaatgccttcttgtttgagattccatgcattattgagatccatgactaagtaagcacagtgcatgtggggaaatcaatgacctaaagccaaggcatgttagctatagttatattaattataatattataaaggtagagatgattggctgattggggtatgaagagccaaaagatgagtaatttccccgtaaattcagccttgtcttattgtgtttttataatgacactgtatatgaatgattggcatctgttgaattgtttggttttgaatgtagtcatctttggtcaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="+" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="116480" stop="123311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116780" g_stop="117052" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119248" g_stop="119391" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="417" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120909" g_stop="121034" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121104" g_stop="121255" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122092" g_stop="123006" g_length="915"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="1609" r_length="914" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1610" polyA_stop="1632"/>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="+" ref_id="SGN-U316689" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116780" e_stop="117052"/>
          <exon e_start="119248" e_stop="119391"/>
          <exon e_start="120909" e_stop="121034"/>
          <exon e_start="121104" e_stop="121255"/>
          <exon e_start="122092" e_stop="123006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</genome_strand>
        <mrna_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAAGCATTTATGTTTAGCAATG-CCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335785" ref_strand="+" ref_description="SGN-U335785        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | bacterial transferase hexapeptide repeat-containing protein, contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) | chr1:6774754-6777438 FORWARD | Aliases: None(evalue: 1e-05, score=47.8) genbank/nr: LacOPZ-alpha(evalue: 1e-18, score=97.4)">
      <seq>ctgaagaattactgagaaacaaggggcaaaagccctaactacaaagcagtgacgtaccgatgctatccaataagtttgatattatttggaaggataacagtcaatatccatgactattctccatacagatgctcacggggtaaaataaatctctggaaagcaaaaaaagagagagttgcatgggcactgatctcattggacgatgctcttagcagctttttcggggaggatattatcaggaagtacaagctttttttttgtttcacggacaacaccaatcatagaatcatattcctcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0124K05-Y7a1P/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0124K05.1" temp_strand="-" temp_description="C04SLm0124K05.1  CU468239.4 htgs_phase:3 submitted_to_sgn_as:C04SLm0124K05 sequenced_by:sanger upload_account_name:uk">
        <position start="122868" stop="121967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122568" g_stop="122267" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0124K05.1" gen_strand="-" ref_id="SGN-U335785" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0124K05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122568" e_stop="122267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAAAGAGAGAGTTGCTTGGGCACTGATCTCATTGGGCGATGCTCTTAGCAGCTTTTTCGGGGAGGATATTATCAGGAAGTACAAGCTCGGGAGGTGTTTCACGGACAACACCAATCATAGAATCATATTCCTCATCAC</genome_strand>
        <mrna_strand>CTGAAGAATTACTGAGAAACAAGGGGCAAAAGCCCTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGATAACAGTCAATATCCATGACTATTCTCCATACAGATGCTCACGGGGTAAAATAAATCTCTGGAAAGCAAAAAAAGAGAGAGTTGCATGGGCACTGATCTCATTGGACGATGCTCTTAGCAGCTTTTTCGGGGAGGATATTATCAGGAAGTACAAGCTTTTTTTTTGTTTCACGGACAACACCAATCATAGAATCATATTCCTCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="11346" PGL_stop="8650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11250" e_stop="10980"/>
            <exon e_start="10833" e_stop="10211"/>
            <exon e_start="9991" e_stop="9899"/>
            <exon e_start="9779" e_stop="9619"/>
            <exon e_start="8943" e_stop="8650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.170" e_score="0.996"/>
          <exon-intron don_prob="0.931" acc_prob="0.636" e_score="0.998"/>
          <exon-intron don_prob="0.671" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.786" acc_prob="0.911" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="11250" e_stop="10980" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.170">
            <gDNA_intron_boundary i_start="10979" i_stop="10834" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="10833" e_stop="10211" e_length="623"/>
          </exon>
          <intron i_serial="2" don_prob="0.931" acc_prob="0.636">
            <gDNA_intron_boundary i_start="10210" i_stop="9992" i_length="219"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9991" e_stop="9899" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.671" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9898" i_stop="9780" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9779" e_stop="9619" e_length="161"/>
          </exon>
          <intron i_serial="4" don_prob="0.786" acc_prob="0.911">
            <gDNA_intron_boundary i_start="9618" i_stop="8944" i_length="675"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="8943" e_stop="8650" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11250" stop="10980"/>
              <exon start="10833" stop="10370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10669" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10383" stop="10211"/>
              <exon start="9991" stop="9899"/>
              <exon start="9779" stop="9619"/>
              <exon start="8943" stop="8650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337543" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAG : GTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGTTTCTGCTGCTGCCTCTACAATAGTGGTTTTCATCTGCAAGACCTCTGGAAAATCAACCTCAAATATGTTGCTGTCTTTCAAGCAACTCAAGCGATATGCCCTTGTATCCATACCTGCAGATAAAGAACAGACATCATTTGTTTACTCTGTAACATTTTTTGCTAAATGGAATCAACTAGCTTCCGAGGGGTGAGCAATAAAAATGCTAGGTGAAATATGAGGAGTCTCTTGTGGTGGACAATCTATGTCCATTCAGTGTTCAATCTCCATGTTGAGCCCATAACTCAGAGGAATTAAATTACATTCCGCTTATCATCTTTTATCCAAACATAGTCATAGTTGCTCCTAAATGGAACGACTGTGTTTTCACTGAAAGACTATATGTCACTTCACAACATCAGCATGTTGCAGTTGATGGCTAGTATTTTGGGGATTCAAATCTGGAATATTGTTGCATCCTGGTAATGTTTAGTTTGGTATATGTATCTAGGGAGATGAAAACCTTTGCAGAATACAAAAACTAAGCCTCAGTCCCACACAAGTTGGGGTCGCATAAACGG : TGTCACAGGGTATATACAGCACAAGAGATCATTTGGGAACATCACCTACCTGCTCCAAGAATGACAACTTGTGCTCCTCCGCCATCAAAAGAA : GTACGTCTCCCCTGCAAGTAACTCAGCTAGTGGATCATGGATCACATGTTTCCATAGCGCCCTTCCAGCTGCAGTTTGACATGCTGATTGTCTCAAAGAATCCCAATCATGTTCGACAGCTGAATGAACTTCTCTGATGGTTTCAGTGTACAAAGAATCAG : GTATGGATAGTAAACCAACTTGCAAACGGGTAAAGGAGTAACTCGCCCCCATTTCACTCCGTCATCTCTATACTCGTCTTATCGAATCATCAGTTTTGGTACCAATTATCATTGTGATATTTTGTTCATGCACCTAACACCATCATCAAAGAGGAGGTACATCTCAACAACTGGCACATCCACATCCACTACCTTAATTATGGCTCAATTATATATCTATCTATACATATATTATATGTGTGTGTATATATTAAACACATATTTATATTATTAACCATAGGCCTAGGAAGTCAG</gDNA_template>
            <first_frame> L  K  Q  I  Q  P  T  T  W  G  S  I  W  V  S  L  K  *  P  G  Q  V  A  Q  L  V  E  Q  I  *  W  V  M  Q  Q  P  E  M  C  I  W  V  T  N  L  R  K  F  N  I  R  K  S  *  *  W  Q  *  L  I  R  I  V  A  I  E  M  E  I  *  A  G  H  C  G  *  L  L  V  H  E  V  R  *  E  Y  C  M  S  R   : G  P  L  P  L  C  S  M  I  L  P  S  L  V  G  A  F  V  H  L  L  F  L  L  L  P  L  Q  *  W  F  S  S  A  R  P  L  E  N  Q  P  Q  I  C  C  C  L  S  S  N  S  S  D  M  P  L  Y  P  Y  L  Q  I  K  N  R  H  H  L  F  T  L  *  H  F  L  L  N  G  I  N  *  L  P  R  G  E  Q  *  K  C  *  V  K  Y  E  E  S  L  V  V  D  N  L  C  P  F  S  V  Q  S  P  C  *  A  H  N  S  E  E  L  N  Y  I  P  L  I  I  F  Y  P  N  I  V  I  V  A  P  K  W  N  D  C  V  F  T  E  R  L  Y  V  T  S  Q  H  Q  H  V  A  V  D  G  *  Y  F  G  D  S  N  L  E  Y  C  C  I  L  V  M  F  S  L  V  Y  V  S  R  E  M  K  T  F  A  E  Y  K  N  *  A  S  V  P  H  K  L  G  S  H  K  R  :  C  H  R  V  Y  T  A  Q  E  I  I  W  E  H  H  L  P  A  P  R  M  T  T  C  A  P  P  P  S  K  E  :  V  R  L  P  C  K  *  L  S  *  W  I  M  D  H  M  F  P  *  R  P  S  S  C  S  L  T  C  *  L  S  Q  R  I  P  I  M  F  D  S  *  M  N  F  S  D  G  F  S  V  Q  R  I  R :   Y  G  *  *  T  N  L  Q  T  G  K  G  V  T  R  P  H  F  T  P  S  S  L  Y  S  S  Y  R  I  I  S  F  G  T  N  Y  H  C  D  I  L  F  M  H  L  T  P  S  S  K  R  R  Y  I  S  T  T  G  T  S  T  S  T  T  L  I  M  A  Q  L  Y  I  Y  L  Y  I  Y  Y  M  C  V  Y  I  L  N  T  Y  L  Y  Y  *  P  *  A  *  E  V   </first_frame>
            <second_frame>  *  S  K  Y  N  L  Q  H  G  V  P  S  G  *  V  *  S  D  L  G  K  L  R  N  S  L  N  K  F  S  G  S  C  N  N  P  K  C  A  S  G  S  P  I  *  E  S  L  T  S  E  N  P  S  D  G  N  N  S  S  G  *  S  L  *  K  W  K  F  E  L  D  I  V  V  D  C  L  F  M  K  S  A  K  S  T  V  *  A  E  :  V  R  C  H  S  V  Q  *  F  C  H  H  *  L  V  L  L  F  I  C  C  F  C  C  C  L  Y  N  S  G  F  H  L  Q  D  L  W  K  I  N  L  K  Y  V  A  V  F  Q  A  T  Q  A  I  C  P  C  I  H  T  C  R  *  R  T  D  I  I  C  L  L  C  N  I  F  C  *  M  E  S  T  S  F  R  G  V  S  N  K  N  A  R  *  N  M  R  S  L  L  W  W  T  I  Y  V  H  S  V  F  N  L  H  V  E  P  I  T  Q  R  N  *  I  T  F  R  L  S  S  F  I  Q  T  *  S  *  L  L  L  N  G  T  T  V  F  S  L  K  D  Y  M  S  L  H  N  I  S  M  L  Q  L  M  A  S  I  L  G  I  Q  I  W  N  I  V  A  S  W  *  C  L  V  W  Y  M  Y  L  G  R  *  K  P  L  Q  N  T  K  T  K  P  Q  S  H  T  S  W  G  R  I  N  G :   V  T  G  Y  I  Q  H  K  R  S  F  G  N  I  T  Y  L  L  Q  E  *  Q  L  V  L  L  R  H  Q  K  K :   Y  V  S  P  A  S  N  S  A  S  G  S  W  I  T  C  F  H  S  A  L  P  A  A  V  *  H  A  D  C  L  K  E  S  Q  S  C  S  T  A  E  *  T  S  L  M  V  S  V  Y  K  E  S   : G  M  D  S  K  P  T  C  K  R  V  K  E  *  L  A  P  I  S  L  R  H  L  Y  T  R  L  I  E  S  S  V  L  V  P  I  I  I  V  I  F  C  S  C  T  *  H  H  H  Q  R  G  G  T  S  Q  Q  L  A  H  P  H  P  L  P  *  L  W  L  N  Y  I  S  I  Y  T  Y  I  I  C  V  C  I  Y  *  T  H  I  Y  I  I  N  H  R  P  R  K  S  </second_frame>
            <third_frame>   E  A  N  T  T  Y  N  M  G  F  H  L  G  E  F  E  V  T  W  A  S  C  A  T  R  *  T  N  L  V  G  H  A  T  T  R  N  V  H  L  G  H  Q  F  E  K  V  *  H  Q  K  I  L  V  M  A  I  T  H  Q  D  S  R  Y  R  N  G  N  L  S  W  T  L  W  L  I  A  C  S  *  S  P  L  R  V  L  Y  E  Q  R :   S  A  A  T  L  F  N  D  F  A  I  I  S  W  C  F  C  S  S  V  V  S  A  A  A  S  T  I  V  V  F  I  C  K  T  S  G  K  S  T  S  N  M  L  L  S  F  K  Q  L  K  R  Y  A  L  V  S  I  P  A  D  K  E  Q  T  S  F  V  Y  S  V  T  F  F  A  K  W  N  Q  L  A  S  E  G  *  A  I  K  M  L  G  E  I  *  G  V  S  C  G  G  Q  S  M  S  I  Q  C  S  I  S  M  L  S  P  *  L  R  G  I  K  L  H  S  A  Y  H  L  L  S  K  H  S  H  S  C  S  *  M  E  R  L  C  F  H  *  K  T  I  C  H  F  T  T  S  A  C  C  S  *  W  L  V  F  W  G  F  K  S  G  I  L  L  H  P  G  N  V  *  F  G  I  C  I  *  G  D  E  N  L  C  R  I  Q  K  L  S  L  S  P  T  Q  V  G  V  A  *  T   : V  S  Q  G  I  Y  S  T  R  D  H  L  G  T  S  P  T  C  S  K  N  D  N  L  C  S  S  A  I  K  R   : S  T  S  P  L  Q  V  T  Q  L  V  D  H  G  S  H  V  S  I  A  P  F  Q  L  Q  F  D  M  L  I  V  S  K  N  P  N  H  V  R  Q  L  N  E  L  L  *  W  F  Q  C  T  K  N  Q  :  V  W  I  V  N  Q  L  A  N  G  *  R  S  N  S  P  P  F  H  S  V  I  S  I  L  V  L  S  N  H  Q  F  W  Y  Q  L  S  L  *  Y  F  V  H  A  P  N  T  I  I  K  E  E  V  H  L  N  N  W  H  I  H  I  H  Y  L  N  Y  G  S  I  I  Y  L  S  I  H  I  L  Y  V  C  V  Y  I  K  H  I  F  I  L  L  T  I  G  L  G  S  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11008" stop="10980"/>
                    <exon start="10833" stop="10578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPLRVLYEQRSAATLFNDFAIISWCFCSSVVSAAASTIVVFICKTSGKSTSNMLLSFKQLKRYALVSIPADKEQTSFVYSVTFFAKWNQLASEG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8930" stop="8670"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNLQTGKGVTRPHFTPSSLYSSYRIISFGTNYHCDILFMHLTPSSKRRYISTTGTSTSTTLIMAQLYIYLYIYYMCVYILNTYLYY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10214" stop="10211"/>
                    <exon start="9991" stop="9899"/>
                    <exon start="9779" stop="9643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVSQGIYSTRDHLGTSPTCSKNDNLCSSAIKRSTSPLQVTQLVDHGSHVSIAPFQLQFDMLIVSKNPNHVRQLNELL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11346" e_stop="10771"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="11346" e_stop="10771" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11346" stop="10771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322149" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGTGCTTCTAAGCTCTAACAGCAAGTTAGACTTTATTGGTGAACCATTCTTATAATATTCACAAAATAGTCTTGTTTGGTGGTTCTCCAGAAGCCTGAAGCAAATACAACCTACAACATGGGGTTCCATCTGGGTGAGTTTGAAGTGACCTGGGCAAGTTGCGCAACTCGTTGAACAAATTTAGTGGGTCATGCAACAACCCGAAATGTGCATCTGGGTCACCAATTTGAGAAAGTTTAACATCAGAAAATCCTAGTGATGGCAATAACTCATCAGGATAGTCGCTATAGAAATGGAAATTTGAGCTGGACATTGTGGTTGATTGCTTGTTCATGAAGTCCGCTAAGAGTACTGTATGAGCAGAGGTACAGTTATTTGCTATAATCTTTAGTACTTCCATTGCATTTGAGTGAGAAAGATAGTAGAGAATTCCCTCTAATACCCACACTGTATTCGTATTTAGAGTTAAGCCTGATTCTTGAAGCTTTTCAAGCCAGTTCTTTTCTCTCAGGTCCGCTGCCACTCTGTTCAATGATTTTGCCATCATTAGTTGGTGCTTTTGTTCATCTGTTGT</gDNA_template>
            <first_frame> *  V  L  L  S  S  N  S  K  L  D  F  I  G  E  P  F  L  *  Y  S  Q  N  S  L  V  W  W  F  S  R  S  L  K  Q  I  Q  P  T  T  W  G  S  I  W  V  S  L  K  *  P  G  Q  V  A  Q  L  V  E  Q  I  *  W  V  M  Q  Q  P  E  M  C  I  W  V  T  N  L  R  K  F  N  I  R  K  S  *  *  W  Q  *  L  I  R  I  V  A  I  E  M  E  I  *  A  G  H  C  G  *  L  L  V  H  E  V  R  *  E  Y  C  M  S  R  G  T  V  I  C  Y  N  L  *  Y  F  H  C  I  *  V  R  K  I  V  E  N  S  L  *  Y  P  H  C  I  R  I  *  S  *  A  *  F  L  K  L  F  K  P  V  L  F  S  Q  V  R  C  H  S  V  Q  *  F  C  H  H  *  L  V  L  L  F  I  C  C </first_frame>
            <second_frame>  R  C  F  *  A  L  T  A  S  *  T  L  L  V  N  H  S  Y  N  I  H  K  I  V  L  F  G  G  S  P  E  A  *  S  K  Y  N  L  Q  H  G  V  P  S  G  *  V  *  S  D  L  G  K  L  R  N  S  L  N  K  F  S  G  S  C  N  N  P  K  C  A  S  G  S  P  I  *  E  S  L  T  S  E  N  P  S  D  G  N  N  S  S  G  *  S  L  *  K  W  K  F  E  L  D  I  V  V  D  C  L  F  M  K  S  A  K  S  T  V  *  A  E  V  Q  L  F  A  I  I  F  S  T  S  I  A  F  E  *  E  R  *  *  R  I  P  S  N  T  H  T  V  F  V  F  R  V  K  P  D  S  *  S  F  S  S  Q  F  F  S  L  R  S  A  A  T  L  F  N  D  F  A  I  I  S  W  C  F  C  S  S  V   </second_frame>
            <third_frame>   G  A  S  K  L  *  Q  Q  V  R  L  Y  W  *  T  I  L  I  I  F  T  K  *  S  C  L  V  V  L  Q  K  P  E  A  N  T  T  Y  N  M  G  F  H  L  G  E  F  E  V  T  W  A  S  C  A  T  R  *  T  N  L  V  G  H  A  T  T  R  N  V  H  L  G  H  Q  F  E  K  V  *  H  Q  K  I  L  V  M  A  I  T  H  Q  D  S  R  Y  R  N  G  N  L  S  W  T  L  W  L  I  A  C  S  *  S  P  L  R  V  L  Y  E  Q  R  Y  S  Y  L  L  *  S  L  V  L  P  L  H  L  S  E  K  D  S  R  E  F  P  L  I  P  T  L  Y  S  Y  L  E  L  S  L  I  L  E  A  F  Q  A  S  S  F  L  S  G  P  L  P  L  C  S  M  I  L  P  S  L  V  G  A  F  V  H  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="9576" PGL_stop="11022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9576" e_stop="9942"/>
            <exon e_start="10658" e_stop="11022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9576" e_stop="9942" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9943" i_stop="10657" i_length="715"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="10658" e_stop="11022" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9576" stop="9942"/>
              <exon start="10658" stop="11022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTCTAATCAAGAAAATGGTAGCTTGCCTGATTTTATACTACCTGATTCTTTGTACACTGAAACCATCAGAGAAGTTCATTCAGCTGTCGAACATGATTGGGATTCTTTGAGACAATCAGCATGTCAAACTGCAGCTGGAAGGGCGCTATGGAAACATGTGATCCATGATCCACTAGCTGAGTTACTTGCAGGGGAGACGTACCTGAAAAAATTGTATGAGAAGATTAAGAAAGATATCCTCAACAATGCTAAAGAGATTTCTGGAGTTATCATTGCAGTAAGGACACTATGGTTTGATAAGGGAATTGAAGCAGCTCTTACTTCTTTTGATGGCGGAGGAGCACAAGTTGTCATTCTTGGAGCAG : GTATGGATACAAGGGCATATCGCTTGAGTTGCTTGAAAGACAGCAACATATTTGAGGTTGATTTTCCAGAGGTCTTGCAGATGAAAACCACTATTGTAGAGGCAGCAGCAGAAACAACAGATGAACAAAAGCACCAACTAATGATGGCAAAATCATTGAACAGAGTGGCAGCGGACCTGAGAGAAAAGAACTGGCTTGAAAAGCTTCAAGAATCAGGCTTAACTCTAAATACGAATACAGTGTGGGTATTAGAGGGAATTCTCTACTATCTTTCTCACTCAAATGCAATGGAAGTACTAAAGATTATAGCAAATAACTGTACCTCTGCTCATACAGTACTCTTAGCGGACTTCATGAACAAGCAA</gDNA_template>
            <first_frame> M  S  N  Q  E  N  G  S  L  P  D  F  I  L  P  D  S  L  Y  T  E  T  I  R  E  V  H  S  A  V  E  H  D  W  D  S  L  R  Q  S  A  C  Q  T  A  A  G  R  A  L  W  K  H  V  I  H  D  P  L  A  E  L  L  A  G  E  T  Y  L  K  K  L  Y  E  K  I  K  K  D  I  L  N  N  A  K  E  I  S  G  V  I  I  A  V  R  T  L  W  F  D  K  G  I  E  A  A  L  T  S  F  D  G  G  G  A  Q  V  V  I  L  G  A   : G  M  D  T  R  A  Y  R  L  S  C  L  K  D  S  N  I  F  E  V  D  F  P  E  V  L  Q  M  K  T  T  I  V  E  A  A  A  E  T  T  D  E  Q  K  H  Q  L  M  M  A  K  S  L  N  R  V  A  A  D  L  R  E  K  N  W  L  E  K  L  Q  E  S  G  L  T  L  N  T  N  T  V  W  V  L  E  G  I  L  Y  Y  L  S  H  S  N  A  M  E  V  L  K  I  I  A  N  N  C  T  S  A  H  T  V  L  L  A  D  F  M  N  K  Q </first_frame>
            <second_frame>  C  L  I  K  K  M  V  A  C  L  I  L  Y  Y  L  I  L  C  T  L  K  P  S  E  K  F  I  Q  L  S  N  M  I  G  I  L  *  D  N  Q  H  V  K  L  Q  L  E  G  R  Y  G  N  M  *  S  M  I  H  *  L  S  Y  L  Q  G  R  R  T  *  K  N  C  M  R  R  L  R  K  I  S  S  T  M  L  K  R  F  L  E  L  S  L  Q  *  G  H  Y  G  L  I  R  E  L  K  Q  L  L  L  L  L  M  A  E  E  H  K  L  S  F  L  E  Q  :  V  W  I  Q  G  H  I  A  *  V  A  *  K  T  A  T  Y  L  R  L  I  F  Q  R  S  C  R  *  K  P  L  L  *  R  Q  Q  Q  K  Q  Q  M  N  K  S  T  N  *  *  W  Q  N  H  *  T  E  W  Q  R  T  *  E  K  R  T  G  L  K  S  F  K  N  Q  A  *  L  *  I  R  I  Q  C  G  Y  *  R  E  F  S  T  I  F  L  T  Q  M  Q  W  K  Y  *  R  L  *  Q  I  T  V  P  L  L  I  Q  Y  S  *  R  T  S  *  T  S   </second_frame>
            <third_frame>   V  *  S  R  K  W  *  L  A  *  F  Y  T  T  *  F  F  V  H  *  N  H  Q  R  S  S  F  S  C  R  T  *  L  G  F  F  E  T  I  S  M  S  N  C  S  W  K  G  A  M  E  T  C  D  P  *  S  T  S  *  V  T  C  R  G  D  V  P  E  K  I  V  *  E  D  *  E  R  Y  P  Q  Q  C  *  R  D  F  W  S  Y  H  C  S  K  D  T  M  V  *  *  G  N  *  S  S  S  Y  F  F  *  W  R  R  S  T  S  C  H  S  W  S  R :   Y  G  Y  K  G  I  S  L  E  L  L  E  R  Q  Q  H  I  *  G  *  F  S  R  G  L  A  D  E  N  H  Y  C  R  G  S  S  R  N  N  R  *  T  K  A  P  T  N  D  G  K  I  I  E  Q  S  G  S  G  P  E  R  K  E  L  A  *  K  A  S  R  I  R  L  N  S  K  Y  E  Y  S  V  G  I  R  G  N  S  L  L  S  F  S  L  K  C  N  G  S  T  K  D  Y  S  K  *  L  Y  L  C  S  Y  S  T  L  S  G  L  H  E  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9576" stop="9942"/>
                    <exon start="10658" stop="11022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>732</number_coding_nucleotides>
                  <number_encoded_amino_acids>244</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNQENGSLPDFILPDSLYTETIREVHSAVEHDWDSLRQSACQTAAGRALWKHVIHDPLAELLAGETYLKKLYEKIKKDILNNAKEISGVIIAVRTLWFDKGIEAALTSFDGGGAQVVILGAGMDTRAYRLSCLKDSNIFEVDFPEVLQMKTTIVEAAAETTDEQKHQLMMAKSLNRVAADLREKNWLEKLQESGLTLNTNTVWVLEGILYYLSHSNAMEVLKIIANNCTSAHTVLLADFMNKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14617" PGL_stop="12453"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14617" e_stop="14396"/>
            <exon e_start="14312" e_stop="14205"/>
            <exon e_start="14110" e_stop="13980"/>
            <exon e_start="13363" e_stop="13263"/>
            <exon e_start="12807" e_stop="12748"/>
            <exon e_start="12556" e_stop="12453"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.925" e_score="0.995"/>
          <exon-intron don_prob="0.914" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="14617" e_stop="14396" e_length="222"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.925">
            <gDNA_intron_boundary i_start="14395" i_stop="14313" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14312" e_stop="14205" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="0.998">
            <gDNA_intron_boundary i_start="14204" i_stop="14111" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14110" e_stop="13980" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.967" acc_prob="0.979">
            <gDNA_intron_boundary i_start="13979" i_stop="13364" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13363" e_stop="13263" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13262" i_stop="12808" i_length="455"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12807" e_stop="12748" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.977">
            <gDNA_intron_boundary i_start="12747" i_stop="12557" i_length="191"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="12556" e_stop="12453" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14617" stop="14396"/>
              <exon start="14312" stop="14205"/>
              <exon start="14110" stop="13980"/>
              <exon start="13363" stop="13263"/>
              <exon start="12807" stop="12748"/>
              <exon start="12556" stop="12453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323364" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCAATACCGTTGCGTTTCAACCACCATGACCCCGCTGAGTATCACCCTTATCCCTTCCTCCACCGTGCCTCCGACGCCCCTGAAACCTCCGCCATCGGTGAAACAACCGCCGCCTACGCCGCCGATCGAAGCAAAGTTTTTCAGCCGTAGAAACGCCGTCGTTTGGCTCTCACTCATTGCTCCTCTAACTCATCCTGCCTCCGCTTTTTCCTTCGGCATAT : CAGGACCAAAAGAATGGCTGAGAGATCAGAAGAAGAAGACTGCGAAGTACCTTTTGGCTCCAATCGAGGCTTCTAGAAACATCCTCCGATATGCTAATCTCTTACTTA : CTAGAACTGAACCAGAGTTTGGTGAAAAGGAACTTGAAGAAGTTCAGAGCTTATTGAGGTCTGCTGCAAGGGATTGTGTGCCTCAAGAGAGGAATTCCTTCGTTCAGTTTCAATCAAAATCAGGAGTTGAG : GTTTGCACATTCCAGCTGGTTGTGAAAAATGCTTCTTCTTTGCTTCCTGACAAGGACCCGGTAAAGTTAGCAGCTGAAGCCAAACTTATCGATCTCATAAG : GTCTTTTGCTTCTCTCAGTGACATGGCAAATGAATTTGATGTGCAAGTTGCTTCTAATAG : ACAAAAGGTTGCAAATGCTCTCATGGATACACTGACCTGTCTGGACAACTTTGAGCAAGGTGTCAAGGAATGCCTTGAAGTTTGATTATCCTTATTCAAGTCAA</gDNA_template>
            <first_frame> T  N  T  V  A  F  Q  P  P  *  P  R  *  V  S  P  L  S  L  P  P  P  C  L  R  R  P  *  N  L  R  H  R  *  N  N  R  R  L  R  R  R  S  K  Q  S  F  S  A  V  E  T  P  S  F  G  S  H  S  L  L  L  *  L  I  L  P  P  L  F  P  S  A  Y  :  Q  D  Q  K  N  G  *  E  I  R  R  R  R  L  R  S  T  F  W  L  Q  S  R  L  L  E  T  S  S  D  M  L  I  S  Y  L  :  L  E  L  N  Q  S  L  V  K  R  N  L  K  K  F  R  A  Y  *  G  L  L  Q  G  I  V  C  L  K  R  G  I  P  S  F  S  F  N  Q  N  Q  E  L  R :   F  A  H  S  S  W  L  *  K  M  L  L  L  C  F  L  T  R  T  R  *  S  *  Q  L  K  P  N  L  S  I  S  *   : G  L  L  L  L  S  V  T  W  Q  M  N  L  M  C  K  L  L  L  I   : D  K  R  L  Q  M  L  S  W  I  H  *  P  V  W  T  T  L  S  K  V  S  R  N  A  L  K  F  D  Y  P  Y  S  S  Q </first_frame>
            <second_frame>  P  I  P  L  R  F  N  H  H  D  P  A  E  Y  H  P  Y  P  F  L  H  R  A  S  D  A  P  E  T  S  A  I  G  E  T  T  A  A  Y  A  A  D  R  S  K  V  F  Q  P  *  K  R  R  R  L  A  L  T  H  C  S  S  N  S  S  C  L  R  F  F  L  R  H  I :   R  T  K  R  M  A  E  R  S  E  E  E  D  C  E  V  P  F  G  S  N  R  G  F  *  K  H  P  P  I  C  *  S  L  T  Y :   *  N  *  T  R  V  W  *  K  G  T  *  R  S  S  E  L  I  E  V  C  C  K  G  L  C  A  S  R  E  E  F  L  R  S  V  S  I  K  I  R  S  *   : G  L  H  I  P  A  G  C  E  K  C  F  F  F  A  S  *  Q  G  P  G  K  V  S  S  *  S  Q  T  Y  R  S  H  K  :  V  F  C  F  S  Q  *  H  G  K  *  I  *  C  A  S  C  F  *  *  :  T  K  G  C  K  C  S  H  G  Y  T  D  L  S  G  Q  L  *  A  R  C  Q  G  M  P  *  S  L  I  I  L  I  Q  V   </second_frame>
            <third_frame>   Q  Y  R  C  V  S  T  T  M  T  P  L  S  I  T  L  I  P  S  S  T  V  P  P  T  P  L  K  P  P  P  S  V  K  Q  P  P  P  T  P  P  I  E  A  K  F  F  S  R  R  N  A  V  V  W  L  S  L  I  A  P  L  T  H  P  A  S  A  F  S  F  G  I   : S  G  P  K  E  W  L  R  D  Q  K  K  K  T  A  K  Y  L  L  A  P  I  E  A  S  R  N  I  L  R  Y  A  N  L  L  L   : T  R  T  E  P  E  F  G  E  K  E  L  E  E  V  Q  S  L  L  R  S  A  A  R  D  C  V  P  Q  E  R  N  S  F  V  Q  F  Q  S  K  S  G  V  E  :  V  C  T  F  Q  L  V  V  K  N  A  S  S  L  L  P  D  K  D  P  V  K  L  A  A  E  A  K  L  I  D  L  I  R :   S  F  A  S  L  S  D  M  A  N  E  F  D  V  Q  V  A  S  N  R :   Q  K  V  A  N  A  L  M  D  T  L  T  C  L  D  N  F  E  Q  G  V  K  E  C  L  E  V  *  L  S  L  F  K  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14615" stop="14396"/>
                    <exon start="14312" stop="14205"/>
                    <exon start="14110" stop="13980"/>
                    <exon start="13363" stop="13263"/>
                    <exon start="12807" stop="12748"/>
                    <exon start="12556" stop="12472"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYRCVSTTMTPLSITLIPSSTVPPTPLKPPPSVKQPPPTPPIEAKFFSRRNAVVWLSLIAPLTHPASAFSFGISGPKEWLRDQKKKTAKYLLAPIEASRNILRYANLLLTRTEPEFGEKELEEVQSLLRSAARDCVPQERNSFVQFQSKSGVEVCTFQLVVKNASSLLPDKDPVKLAAEAKLIDLIRSFASLSDMANEFDVQVASNRQKVANALMDTLTCLDNFEQGVKECLEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35581" PGL_stop="37255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35581" e_stop="35647"/>
            <exon e_start="36189" e_stop="36246"/>
            <exon e_start="36445" e_stop="36504"/>
            <exon e_start="36797" e_stop="36859"/>
            <exon e_start="36930" e_stop="37255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35581" e_stop="35647" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="35648" i_stop="36188" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36189" e_stop="36246" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="36247" i_stop="36444" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36445" e_stop="36504" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.746" acc_prob="0.772">
            <gDNA_intron_boundary i_start="36505" i_stop="36796" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36797" e_stop="36859" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36860" i_stop="36929" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36930" e_stop="37255" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35581" stop="35647"/>
              <exon start="36189" stop="36246"/>
              <exon start="36445" stop="36504"/>
              <exon start="36797" stop="36859"/>
              <exon start="36930" stop="37255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA : GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG : TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG : TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG : GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</gDNA_template>
            <first_frame> F  S  Y  *  E  F  S  V  I  T  L  K  M  K  Y  T  I  L  S  G  L  S   : S  L  K  K  L  M  M  P  A  R  R  C  F  R  S  F  T  S  C  S :   P  K  V  R  R  S  G  S  V  I  S  R  H  N  E  N  V  T  K  S :   S  T  R  S  G  D  N  *  *  R  L  V  I  R  I  L  V  L  H  I  R :   W  K  D  L  L  A  F  I  P  V  K  S  Q  T  *  A  C  I  P  R  I  S  T  I  G  L  V  R  I  L  C  L  M  N  L  V  S  S  L  F  E  G  I  L  *  S  R  G  Q  R  Q  C  I  L  K  K  S  F  A  H  S  N  L  H  S  E  L  P  T  W  K  I  F  M  F  C  G  I  I  T  *  I  V  S  Y  L  F  V  L  S  H  I  C  T  Y  L  I  V  N  L  N  Y  I  K  Q  L  E  W  </first_frame>
            <second_frame>  S  V  I  E  N  S  A  *  S  H  *  R  *  N  T  P  S  *  V  V  S  Q  :  V  *  R  N  *  *  C  Q  Q  G  D  V  F  G  A  S  Q  A  A   : V  Q  R  *  G  G  Q  A  Q  S  S  A  G  T  T  R  M  S  P  K   : V  P  Q  G  L  G  T  T  N  E  D  W  L  S  E  F  S  F  C  T  S   : G  G  K  I  C  L  P  L  Y  Q  S  S  H  K  L  E  P  V  F  P  G  *  V  L  *  A  *  *  G  F  Y  A  S  *  I  W  Y  P  L  Y  L  R  G  S  C  N  P  G  A  K  G  S  A  F  *  R  R  A  L  L  I  L  I  Y  I  P  S  Y  Q  H  G  K  S  L  C  F  V  V  *  *  L  K  L  Y  H  I  C  L  C  C  L  I  Y  A  L  I  *  L  *  I  *  I  I  *  N  N  *  N  G </second_frame>
            <third_frame>   Q  L  L  R  I  Q  R  D  H  I  E  D  E  I  H  H  L  K  W  S  L  K :   S  E  E  T  D  D  A  S  K  E  M  F  S  E  L  H  K  L  Q  :  S  K  G  E  E  V  R  L  S  H  Q  Q  A  Q  R  E  C  H  Q  K  :  F  H  K  V  W  G  Q  L  M  K  T  G  Y  Q  N  S  R  F  A  H  Q  :  V  E  R  F  A  C  L  Y  T  S  Q  V  T  N  L  S  L  Y  S  P  D  K  Y  Y  R  P  S  E  D  F  M  P  H  E  F  G  I  L  S  I  *  G  D  L  V  I  Q  G  P  K  A  V  H  F  E  E  E  L  C  S  F  *  F  T  F  R  V  T  N  M  E  N  L  Y  V  L  W  Y  N  N  L  N  C  I  I  F  V  C  A  V  S  Y  M  H  L  S  D  C  E  F  E  L  Y  K  T  T  R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35583" stop="35647"/>
                    <exon start="36189" stop="36246"/>
                    <exon start="36445" stop="36504"/>
                    <exon start="36797" stop="36859"/>
                    <exon start="36930" stop="37052"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLRIQRDHIEDEIHHLKWSLKSEETDDASKEMFSELHKLQSKGEEVRLSHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFGILSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="47408" PGL_stop="42822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47408" e_stop="47271"/>
            <exon e_start="47161" e_stop="47090"/>
            <exon e_start="46345" e_stop="46271"/>
            <exon e_start="45071" e_stop="44991"/>
            <exon e_start="44324" e_stop="44255"/>
            <exon e_start="44179" e_stop="44088"/>
            <exon e_start="43385" e_stop="43344"/>
            <exon e_start="43252" e_stop="43172"/>
            <exon e_start="42993" e_stop="42822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.573" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="0.989"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="47408" e_stop="47271" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.573">
            <gDNA_intron_boundary i_start="47270" i_stop="47162" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47161" e_stop="47090" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="47089" i_stop="46346" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46345" e_stop="46271" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="46270" i_stop="45072" i_length="1199"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45071" e_stop="44991" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.625">
            <gDNA_intron_boundary i_start="44990" i_stop="44325" i_length="666"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44324" e_stop="44255" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44254" i_stop="44180" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="44179" e_stop="44088" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="44087" i_stop="43386" i_length="702"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="43385" e_stop="43344" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43343" i_stop="43253" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="43252" e_stop="43172" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.929" acc_prob="0.947">
            <gDNA_intron_boundary i_start="43171" i_stop="42994" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="42993" e_stop="42822" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47408" stop="47271"/>
              <exon start="47161" stop="47090"/>
              <exon start="46345" stop="46271"/>
              <exon start="45071" stop="44991"/>
              <exon start="44324" stop="44255"/>
              <exon start="44179" stop="44088"/>
              <exon start="43385" stop="43344"/>
              <exon start="43252" stop="43172"/>
              <exon start="42993" stop="42822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG : CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG : TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG : GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA : GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG : ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAG : ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG : ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG : GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</gDNA_template>
            <first_frame> S  *  K  T  G  R  G  N  *  P  I  S  N  S  N  I  S  L  C  K  I  L  S  N  R  T  A  A  L  I  R  S  L  S  G  E  K  M  E  A  N  A  P  Q  F  K  :  L  I  L  G  S  S  S  T  A  R  K  K  I  L  G  D  M  G  Y  E  F  T  T  M  :  S  A  D  I  D  E  K  A  I  R  K  E  K  P  E  D  L  V  M  A  L  A  E  A  K  :  A  E  A  I  I  P  R  V  S  I  G  E  S  E  G  D  A  E  P  T  L  L  I  T  C  D  Q  :  V  V  V  Y  E  G  V  I  R  E  K  P  S  S  E  A  E  A  R  Q  F  M  K   : D  Y  A  N  G  H  A  A  T  V  S  S  V  L  V  T  N  L  T  T  G  S  R  R  G  E  W  D  K  V  E  :  I  Y  F  H  D  I  P  D  Q  V  I  D  K  L  :  I  E  E  G  I  V  L  Y  A  A  G  G  L  I  I  E  H  P  L  V  L  P  Y  I  K  E  V  :  V  G  S  T  D  S  V  M  G  L  P  K  A  L  T  E  R  L  I  K  E  V  L  *  Y  D  Y  D  P  A  P  T  *  M  S  S  R  S  I  I  L  I  Y  A  I  G  A  E  I  I  I  D  C  S  H  W  M  </first_frame>
            <second_frame>  R  K  K  R  V  G  A  I  D  P  F  Q  I  V  T  F  P  C  V  K  F  S  P  I  G  L  R  R  *  S  V  H  S  P  A  K  K  W  K  P  M  L  L  S  L  S :   *  F  W  V  H  P  L  L  L  G  K  R  F  *  A  T  W  D  T  S  S  Q  P  C :   L  Q  I  L  M  R  K  L  S  G  K  K  S  L  K  I  *  L  W  L  L  L  R  Q  R :   Q  K  P  S  Y  Q  G  F  Q  L  E  N  P  K  G  M  P  S  Q  H  F  *  L  R  V  I  K :   W  W  S  M  K  V  *  S  G  K  N  H  P  V  K  Q  K  H  V  S  S  *  K  :  I  T  P  M  D  M  Q  Q  P  *  V  L  F  L  S  R  T  *  Q  Q  E  A  E  E  E  S  G  T  K  S  R :   F  I  S  T  T  Y  Q  I  K  S  *  I  N  * :   L  R  K  G  *  F  F  M  Q  L  V  A  *  *  L  N  I  L  S  F  C  L  I  L  R  K  W :   L  A  R  L  I  A  *  W  V  S  Q  K  L  S  P  K  D  L  *  R  R  F  F  S  M  T  M  I  L  L  L  P  E  *  V  R  D  L  *  F  *  Y  T  L  L  E  L  K  L  S  L  I  V  R  T  G  C </second_frame>
            <third_frame>   V  K  N  G  S  G  Q  L  T  H  F  K  *  *  H  F  L  V  *  N  S  L  Q  S  D  C  G  V  N  P  F  T  L  R  R  K  N  G  S  Q  C  S  S  V  *   : A  N  F  G  F  I  L  Y  C  S  E  K  D  F  R  R  H  G  I  R  V  H  N  H   : V  C  R  Y  *  *  E  S  Y  P  E  R  K  A  *  R  F  S  Y  G  S  C  *  G  K   : G  R  S  H  H  T  K  G  F  N  W  R  I  R  R  G  C  R  A  N  T  S  N  Y  V  *  S   : S  G  G  L  *  R  C  D  Q  G  K  T  I  Q  *  S  R  S  T  S  V  H  E  R :   L  R  Q  W  T  C  S  N  R  E  F  C  S  C  H  E  P  D  N  R  K  Q  K  R  R  V  G  Q  S  R   : D  L  F  P  R  H  T  R  S  S  H  R  *  T   : D  *  G  R  D  S  S  L  C  S  W  W  L  D  N  *  T  S  S  R  F  A  L  Y  *  G  S   : G  W  L  D  *  *  R  D  G  S  P  K  S  S  H  R  K  T  Y  K  G  G  S  L  V  *  L  *  S  C  S  Y  L  N  E  F  A  I  Y  N  F  D  I  R  Y  W  S  *  N  Y  H  *  L  F  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47381" stop="47271"/>
                    <exon start="47161" stop="47090"/>
                    <exon start="46345" stop="46271"/>
                    <exon start="45071" stop="44991"/>
                    <exon start="44324" stop="44255"/>
                    <exon start="44179" stop="44088"/>
                    <exon start="43385" stop="43344"/>
                    <exon start="43252" stop="43172"/>
                    <exon start="42993" stop="42922"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISNSNISLCKILSNRTAALIRSLSGEKMEANAPQFKLILGSSSTARKKILGDMGYEFTTMSADIDEKAIRKEKPEDLVMALAEAKAEAIIPRVSIGESEGDAEPTLLITCDQVVVYEGVIREKPSSEAEARQFMKDYANGHAATVSSVLVTNLTTGSRRGEWDKVEIYFHDIPDQVIDKLIEEGIVLYAAGGLIIEHPLVLPYIKEVVGSTDSVMGLPKALTERLIKEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="53569" PGL_stop="55563"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53569" e_stop="55563"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="53569" e_stop="55563" e_length="1995"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53569" stop="55563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATG</gDNA_template>
            <first_frame> L  Q  W  *  Y  S  R  E  K  K  K  K  S  E  R  G  F  R  A  F  Q  T  L  *  F  P  Q  F  I  L  S  L  F  H  R  R  H  E  R  S  H  R  H  A  S  Q  H  R  E  R  R  W  W  *  A  S  R  S  S  D  P  A  E  *  E  V  A  G  F  P  S  E  C  K  L  K  V  R  *  T  R  L  P  L  L  D  L  S  F  V  D  S  M  F  D  S  C  N  G  C  D  F  N  *  S  F  T  N  E  S  *  *  Y  S  S  I  M  A  T  F  A  V  *  S  S  L  C  Y  Y  L  F  R  R  F  G  F  W  I  H  S  L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T  *  E  N  R  C  A  C  C  E  L  *  F  V  Q  S  D  S  I  A  F  S  Y  D  C  E  Q  V  *  V  E  R  *  Y  K  E  F  *  S  G  R  Y  G  L  *  C  W  C  N  C  R  *  S  C  *  G  H  V  A  S  A  Q  K  Y  L  C  C  C  C  *  Y  *  E  Y  Y  A  E  L  V  F  W  E  *  E  V  H  V  D  T  K  L  F  V  *  S  R  R  F  C  C  S  A  V  *  Q  V  R  G  *  K  K  G  E  I  *  A  C  S  C  C  *  D  T  S  W  G  *  *  *  G  I  S  L  C  L  P  R  T  G  *  C  W  E  N  W  G  F  F  V  K  R  S  H  G  N  R  W  W  S  A  *  D  E  Y  H  Y  I  G  S  S  C  S  T  H  Q  *  A  A  S  V  L  W  F  S  D  N  *  E  N  I  Q  *  A  Y  Q  A  L  H  S  R  F  Q  V  G  L  *  S  F  L  H  T  R  W  W  K  G  C  Y  *  R  A  G  K  E  F  T  A  D  T  G  S  R  *  G  I  S  N  D  P  A  P  L  W  K  Y  F  I  Q  L  Y  L  V  *  I  G  V  Y  R  G  Q  R  K  N  E  E  R  *  Q  S  L  A  D  C  I  W  K  W  L  *  M  *  *  C  C  L  A  G  T  T  K  C  K  A  F  S  R  W  S  L  G  G  L  Y  R  Q  V  S  C  K  S  S  V  I  T  L  W  R  S  *  L  G  K  L  R  A  I  C  S  C  F  R  V  R  H  G  T  S  S  L  E  A  E  *  C  S  T  S  V  H  E  S  S  I  I  L  S  F  S  *  F  R  A  L  C  *  F  V  L  Y  H  F  N  L  L  L  V  *  L  H  I  C  S  N  S  Y  F  I  V  V  I  F  L  I  N  I  Y  S  *  L  S  L  *  V  V  D  S  S  C  *  H  A  L  L  F  L  T  V  S  E  M  I  P  L  M </first_frame>
            <second_frame>  F  S  G  S  I  V  E  R  R  R  R  R  V  R  E  V  L  E  P  F  K  L  F  D  F  P  N  L  F  S  L  F  F  T  A  A  M  N  G  A  T  G  T  Q  V  N  T  A  N  G  G  G  G  E  P  V  G  V  Q  I  Q  Q  S  R  R  L  P  D  F  L  Q  S  V  N  L  K  Y  V  K  L  G  Y  H  Y  L  I  S  H  L  L  T  L  C  L  I  P  V  M  A  V  I  L  I  E  A  S  Q  M  N  P  D  D  I  R  Q  L  W  L  H  L  Q  Y  N  L  V  S  V  I  I  C  S  A  V  L  V  F  G  S  T  V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  K  K  I  G  V  L  V  V  N  C  S  L  F  N  P  T  P  S  L  S  A  M  I  V  N  K  Y  K  L  R  G  N  I  R  S  F  N  L  G  G  M  G  C  S  A  G  V  I  A  V  D  L  A  K  D  M  L  Q  V  H  R  N  T  Y  A  V  V  V  S  T  E  N  I  T  Q  N  W  Y  F  G  N  K  K  S  M  L  I  P  N  C  L  F  R  V  G  G  S  A  V  L  L  S  N  K  S  V  D  R  R  R  A  K  Y  K  L  V  H  V  V  R  T  H  R  G  A  D  D  K  A  F  R  C  V  Y  Q  E  Q  D  D  A  G  K  T  G  V  S  L  S  K  D  L  M  A  I  A  G  G  A  L  K  T  N  I  T  T  L  G  P  L  V  L  P  I  S  E  Q  L  L  F  F  G  S  L  I  I  K  K  I  F  N  K  H  I  K  P  Y  I  P  D  F  K  L  A  F  D  H  F  C  I  H  A  G  G  R  A  V  I  D  E  L  E  K  N  L  Q  L  T  Q  V  H  V  E  A  S  R  M  T  L  H  R  F  G  N  T  S  S  S  S  I  W  Y  E  L  A  Y  I  E  A  K  G  R  M  K  K  G  N  K  V  W  Q  I  A  F  G  S  G  F  K  C  N  S  A  V  W  Q  A  L  R  N  V  K  P  S  P  D  G  P  W  E  D  C  I  D  R  Y  P  V  K  V  V  S  *  H  C  G  D  H  D  *  A  S  *  G  L  S  V  A  A  S  V  Y  V  M  A  P  L  L  L  K  P  S  D  A  L  L  L  F  T  S  Q  V  S  F  C  P  F  L  S  L  E  P  Y  A  N  L  C  C  T  I  S  I  Y  Y  L  Y  D  F  I  Y  V  A  I  P  I  L  L  *  L  F  S  *  *  T  S  I  H  D  *  A  Y  E  *  W  I  Q  V  A  N  T  H  C  Y  F  S  L  L  V  K  *  F  H  *   </second_frame>
            <third_frame>   S  V  V  V  *  *  R  E  E  E  E  E  *  E  R  F  *  S  L  S  N  S  L  I  S  P  I  Y  S  L  S  F  S  P  P  P  *  T  E  P  P  A  R  K  S  T  P  R  T  A  V  V  V  S  Q  S  E  F  R  S  S  R  V  G  G  C  R  I  S  F  R  V  *  T  *  S  T  L  N  *  V  T  I  T  *  S  L  I  C  *  L  Y  V  *  F  L  *  W  L  *  F  *  L  K  L  H  K  *  I  L  M  I  F  V  N  Y  G  Y  I  C  S  I  I  *  S  L  L  L  F  V  P  P  F  W  F  L  D  P  Q  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L  R  K  *  V  C  L  L  *  I  V  V  C  S  I  R  L  H  R  F  Q  L  *  L  *  T  S  I  S  *  E  V  I  *  G  V  L  I  W  E  V  W  V  V  V  L  V  *  L  P  L  I  L  L  R  T  C  C  K  C  T  E  I  P  M  L  L  L  L  V  L  R  I  L  R  R  T  G  I  L  G  I  R  S  P  C  *  Y  Q  I  V  C  L  E  S  E  V  L  L  F  C  C  L  T  S  P  W  I  E  E  G  R  N  I  S  L  F  M  L  L  G  H  I  V  G  L  M  I  R  H  F  V  V  F  T  K  N  R  M  M  L  G  K  L  G  F  L  C  Q  K  I  S  W  Q  S  L  V  E  R  L  R  R  I  S  L  H  W  V  L  L  F  Y  P  S  V  S  S  F  C  S  L  V  L  *  *  L  R  K  Y  S  I  S  I  S  S  L  T  F  Q  I  S  S  W  P  L  I  I  S  A  Y  T  L  V  E  G  L  L  L  T  S  W  K  R  I  Y  S  *  H  R  F  T  L  R  H  L  E  *  P  C  T  A  L  E  I  L  H  P  A  L  S  G  M  N  W  R  I  *  R  P  K  E  E  *  R  K  V  T  K  F  G  R  L  H  L  E  V  A  L  N  V  I  V  L  F  G  R  H  Y  E  M  *  S  L  L  P  M  V  P  G  R  I  V  S  T  G  I  L  *  K  *  C  H  N  T  V  E  I  M  I  R  Q  V  K  G  Y  L  *  L  L  P  C  T  S  W  H  L  F  S  *  S  R  V  M  L  Y  F  C  S  R  V  K  Y  H  F  V  L  F  L  V  *  S  L  M  L  I  C  V  V  P  F  Q  S  I  T  C  M  T  S  Y  M  *  Q  F  L  F  Y  C  S  Y  F  P  D  K  H  L  F  M  T  E  L  M  S  S  G  F  K  L  L  T  R  T  V  I  S  H  C  *  *  N  D  S  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53570" stop="55231"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1659</number_coding_nucleotides>
                  <number_encoded_amino_acids>553</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSGSIVERRRRRVREVLEPFKLFDFPNLFSLFFTAAMNGATGTQVNTANGGGGEPVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLIPVMAVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKPKKIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFGSLIIKKIFNKHIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNKVWQIAFGSGFKCNSAVWQALRNVKPSPDGPWEDCIDRYPVKVVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55262" stop="55456"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSVAASVYVMAPLLLKPSDALLLFTSQVSFCPFLSLEPYANLCCTISIYYLYDFIYVAIPILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="63419" PGL_stop="57612"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63419" e_stop="63128"/>
            <exon e_start="62140" e_stop="62078"/>
            <exon e_start="61998" e_stop="61909"/>
            <exon e_start="61807" e_stop="61748"/>
            <exon e_start="61644" e_stop="61579"/>
            <exon e_start="61478" e_stop="61413"/>
            <exon e_start="61320" e_stop="61245"/>
            <exon e_start="60571" e_stop="60507"/>
            <exon e_start="60417" e_stop="60326"/>
            <exon e_start="60217" e_stop="60134"/>
            <exon e_start="60047" e_stop="59963"/>
            <exon e_start="59370" e_stop="59324"/>
            <exon e_start="59173" e_stop="59111"/>
            <exon e_start="59029" e_stop="58970"/>
            <exon e_start="58874" e_stop="58809"/>
            <exon e_start="58714" e_stop="58655"/>
            <exon e_start="58359" e_stop="58245"/>
            <exon e_start="57965" e_stop="57612"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.739" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.862" acc_prob="0.996" e_score="0.978"/>
          <exon-intron don_prob="0.025" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.512" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="63419" e_stop="63128" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="63127" i_stop="62141" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62140" e_stop="62078" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62077" i_stop="61999" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61998" e_stop="61909" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="61908" i_stop="61808" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="61807" e_stop="61748" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.825">
            <gDNA_intron_boundary i_start="61747" i_stop="61645" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="61644" e_stop="61579" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="61578" i_stop="61479" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="61478" e_stop="61413" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.773" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61412" i_stop="61321" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="61320" e_stop="61245" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.739" acc_prob="0.961">
            <gDNA_intron_boundary i_start="61244" i_stop="60572" i_length="673"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="60571" e_stop="60507" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.784">
            <gDNA_intron_boundary i_start="60506" i_stop="60418" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.978">
            <gDNA_exon_boundary e_start="60417" e_stop="60326" e_length="92"/>
          </exon>
          <intron i_serial="9" don_prob="0.862" acc_prob="0.996">
            <gDNA_intron_boundary i_start="60325" i_stop="60218" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="60217" e_stop="60134" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.025" acc_prob="0.990">
            <gDNA_intron_boundary i_start="60133" i_stop="60048" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="60047" e_stop="59963" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="59962" i_stop="59371" i_length="592"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="59370" e_stop="59324" e_length="47"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="59323" i_stop="59174" i_length="150"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="59173" e_stop="59111" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.722" acc_prob="0.988">
            <gDNA_intron_boundary i_start="59110" i_stop="59030" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="59029" e_stop="58970" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.512" acc_prob="0.974">
            <gDNA_intron_boundary i_start="58969" i_stop="58875" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="58874" e_stop="58809" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.759" acc_prob="0.506">
            <gDNA_intron_boundary i_start="58808" i_stop="58715" i_length="94"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="58714" e_stop="58655" e_length="60"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58654" i_stop="58360" i_length="295"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="58359" e_stop="58245" e_length="115"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="0.511">
            <gDNA_intron_boundary i_start="58244" i_stop="57966" i_length="279"/>
          </intron>
          <exon e_serial="18" e_score="0.997">
            <gDNA_exon_boundary e_start="57965" e_stop="57612" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63419" stop="63128"/>
              <exon start="62140" stop="62078"/>
              <exon start="61998" stop="61909"/>
              <exon start="61807" stop="61748"/>
              <exon start="61644" stop="61579"/>
              <exon start="61478" stop="61413"/>
              <exon start="61320" stop="61245"/>
              <exon start="60571" stop="60507"/>
              <exon start="60417" stop="60326"/>
              <exon start="60217" stop="60134"/>
              <exon start="60047" stop="59963"/>
              <exon start="59370" stop="59324"/>
              <exon start="59173" stop="59111"/>
              <exon start="59029" stop="58970"/>
              <exon start="58874" stop="58809"/>
              <exon start="58714" stop="58655"/>
              <exon start="58359" stop="58245"/>
              <exon start="57965" stop="57612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT : TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG : TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG : TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA : GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG : GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG : CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG : GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG : GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGCTGATATTACCAATGAAGTAAATGAAATTAAG : AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG : GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG : GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG : GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT : GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG : GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG : TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG : ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG : GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</gDNA_template>
            <first_frame> C  *  F  Q  Y  F  Q  Q  L  H  F  S  *  S  V  V  Q  I  S  R  T  I  E  K  R  G  *  L  K  I  *  R  K  K  N  E  F  Q  R  R  E  Q  *  R  G  S  E  K  A  I  F  T  Y  W  E  L  V  S  Y  G  V  K  T  V  *  Y  D  G  F  F  S  S  Y  S  *  *  F  Y  F  C  S  C  L  C  S  H  S  C  F  G  P  N  P  V  W  F  H   : L  W  L  H  F  T  N  A  N  C  N  Y  Q  R  S  E  A  H  C  F  *   : V  L  F  V  R  F  F  I  Q  C  G  C  Y  G  W  C  N  I  *  W  S  N  F  *  V  H  W  A  K  R   : V  F  N  D  S  C  Y  T  K  Y  H  W  L  A  C  H  L  I  C  Q   : R  S  F  F  S  I  H  G  K  I  V  G  G  L  W  C  G  N  N  L  L  C   : G  S  C  I  Y  C  *  D  C  T  S  E  Y  E  R  G  S  R  V  C  *  P   : A  L  C  Y  N  W  D  H  V  V  L  F  T  G  T  F  C  *  L  E  A  A  C  C  S  W :   S  I  T  L  P  S  T  D  T  W  T  I  F  H  P  R  I  S  S  V  V   : G  Q  N  G  F  N  R  R  F  *  N  F  V  A  S  S  S  R  L  *  A  D  I  T  N  E  V  N  E  I  K  :  R  S  V  A  S  S  T  N  R  R  T  A  M  R  F  A  D  L  K  H  R  R  Y  W  F  P  L  M  :  V  G  I  G  L  L  I  L  Q  Q  L  G  G  I  N  G  V  I  F  Y  S  S  N  I  F  L  S  A   : G  I  S  S  S  N  A  A  T  F  G  V  G  A  I  Q  :  V  V  A  T  A  V  S  T  W  L  V  D  R  T  G  R  R  I  L  L  I  :  V  S  S  A  G  M  A  V  S  L  L  I  V  S  V  A  F  Y  L  K  :  G  Y  V  S  E  D  S  T  L  Y  G  V  L  G  I  V  S  V  V  G  V  V  :  F  M  I  I  S  F  S  L  G  M  G  P  I  P  W  L  I  M  S  E  :  I  L  P  I  K  I  K  G  L  A  G  S  T  A  T  L  A  N  W  L  F  S  W  V  I  T  V  T  A  P  L  L  M  A  W  S  S  G   : G  T  F  T  I  Y  M  V  M  C  A  F  T  V  A  F  V  A  I  W  V  P  E  T  K  G  R  T  L  E  E  I  Q  F  S  F  R  *  K  L  T  P  S  Q  T  G  L  C  D  P  L  F  F  L  S  Q  N  S  I  S  L  V  Q  K  F  Q  F  F  T  Y  I  G  K  N  E  L  H  M  L  L  Q  S  V  Y  I  S  S  *  S  C  H  L  L  *  F  T  V  *  F  Y  Y  F  C  I  F  *  V  *  L  Y  H  S  I  *  N  K  V  R  </first_frame>
            <second_frame>  A  N  S  S  I  F  N  N  F  I  F  L  D  L  *  F  K  F  Q  E  L  *  R  K  G  V  D  S  K  F  E  E  K  K  M  S  F  R  E  E  N  N  E  G  D  L  K  K  P  F  L  H  T  G  S  W  Y  R  M  G  S  R  Q  S  S  M  M  G  S  S  Q  A  I  R  D  S  S  I  S  V  L  A  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  T  S  P  T  Q  I  A  I  T  K  D  L  K  L  T  V  S  E  :  F  S  L  F  G  S  L  S  N  V  G  A  M  V  G  A  I  S  S  G  Q  I  S  E  Y  I  G  R  K  G  :  S  L  M  I  A  A  I  P  N  I  I  G  W  L  A  I  S  F  A  K  :  D  P  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  A  P  Q  N  M  R  G  G  L  G  S  V  N  Q  :  L  S  V  T  I  G  I  M  L  S  Y  L  L  G  L  F  V  N  W  R  L  L  A  V  L   : G  A  L  P  C  L  A  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  M  G  L  T  E  D  F  E  T  S  L  Q  V  L  R  G  F  E  L  I  L  P  M  K  *  M  K  L  R :   G  L  *  H  H  Q  Q  T  E  E  Q  Q  C  V  L  R  I  S  N  I  E  D  I  G  F  L  S  W :   *  E  L  D  Y  L  S  C  N  S  *  E  E  S  T  V  L  Y  S  I  P  A  T  F  S  Y  L  P  :  V  F  R  Q  V  M  L  Q  L  L  V  S  V  L  Y  R :   L  L  Q  L  Q  F  L  H  G  W  W  T  E  L  D  V  E  F  Y  *  L :   F  P  R  L  E  W  L  L  V  F  L  L  S  P  L  P  S  I  *  R :   V  M  Y  L  R  I  L  P  S  M  V  S  W  E  *  C  P  *  L  G  W  C :   S  *  L  F  H  S  R  S  E  W  D  Q  F  H  G  L  *  C  L  R :   F  F  Q  S  R  S  K  V  S  L  E  V  R  Q  H  *  P  T  G  Y  S  R  G  *  *  Q  *  L  H  R  C  L  W  L  G  A  V  E  :  E  P  S  L  F  T  W  L  C  V  L  S  P  W  R  S  W  Q  F  G  Y  R  R  R  K  G  E  L  *  R  K  F  S  F  L  S  D  E  N  L  P  P  P  K  Q  A  F  V  I  L  C  S  F  C  H  K  T  Q  F  P  L  C  K  S  F  N  F  S  H  I  *  G  R  M  S  C  T  C  C  F  R  V  C  T  F  H  L  D  L  A  I  C  C  N  L  L  Y  D  F  I  I  F  V  Y  S  K  C  D  Y  T  I  Q  F  K  I  K  C  E </second_frame>
            <third_frame>   L  I  P  V  F  S  T  T  S  F  F  L  I  C  S  S  N  F  K  N  Y  R  E  K  G  L  T  Q  N  L  K  K  K  K  *  V  S  E  K  R  T  M  K  G  I  *  K  S  H  F  Y  I  L  G  V  G  I  V  W  G  Q  D  S  L  V  *  W  V  L  L  K  L  F  V  I  V  L  F  L  F  L  L  V  F  S  *  L  L  W  A  Q  S  S  L  V  S  L :   V  A  T  L  H  Q  R  K  L  Q  L  P  K  I  *  S  S  L  F  L  S :   S  L  C  S  V  L  Y  P  M  W  V  L  W  L  V  Q  Y  L  V  V  K  F  L  S  T  L  G  E  K  G :   L  *  *  *  L  L  Y  Q  I  S  L  V  G  L  P  S  H  L  P  K :   I  L  L  F  Y  T  W  E  D  C  W  R  A  L  V  W  E  *  S  L  M  W :   F  L  Y  I  L  L  R  L  H  L  R  I  *  E  G  V  *  G  L  L  T  S :   S  L  L  Q  L  G  S  C  C  P  I  Y  W  D  F  L  L  I  G  G  C  L  L  F  L  :  E  H  Y  L  A  *  H  *  Y  L  D  Y  F  S  S  P  N  L  L  G  G  W :   P  K  W  V  *  Q  K  I  L  K  L  R  C  K  F  F  E  A  L  S  *  Y  Y  Q  *  S  K  *  N  *   : E  V  C  S  I  I  N  K  P  K  N  S  N  A  F  C  G  S  Q  T  *  K  I  L  V  S  S  H   : G  R  N  W  T  T  Y  P  A  T  V  R  R  N  Q  R  C  Y  I  L  F  Q  Q  H  F  P  I  C  R :   Y  F  V  K  *  C  C  N  F  W  C  R  C  Y  T   : G  C  C  N  C  S  F  Y  M  A  G  G  Q  N  W  T  *  N  F  I  N   : C  F  L  G  W  N  G  C  *  S  S  Y  C  L  R  C  L  L  S  K   : G  L  C  I  *  G  F  Y  P  L  W  C  L  G  N  S  V  R  S  W  G  G   : V  H  D  Y  F  I  L  A  R  N  G  T  N  S  M  A  Y  N  V  *   : D  S  S  N  Q  D  Q  R  S  R  W  K  Y  G  N  I  S  Q  L  V  I  L  V  G  N  N  S  D  C  T  V  A  Y  G  L  E  Q  W  R :   N  L  H  Y  L  H  G  Y  V  C  F  H  R  G  V  R  G  N  L  G  T  G  D  E  R  E  N  S  R  G  N  S  V  F  F  Q  M  K  T  Y  P  L  P  N  R  P  L  *  S  F  V  L  F  V  T  K  L  N  F  P  C  A  K  V  S  I  F  H  I  Y  R  E  E  *  V  A  H  A  A  S  E  C  V  H  F  I  L  I  L  P  F  A  V  I  Y  C  M  I  L  L  F  L  Y  I  L  S  V  I  I  P  F  N  L  K  *  S  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63352" stop="63128"/>
                    <exon start="62140" stop="62078"/>
                    <exon start="61998" stop="61909"/>
                    <exon start="61807" stop="61748"/>
                    <exon start="61644" stop="61579"/>
                    <exon start="61478" stop="61413"/>
                    <exon start="61320" stop="61245"/>
                    <exon start="60571" stop="60507"/>
                    <exon start="60417" stop="60337"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGVDSKFEEKKMSFREENNEGDLKKPFLHTGSWYRMGSRQSSMMGSSQAIRDSSISVLACVLIVALGPIQFGFTCGYTSPTQIAITKDLKLTVSEFSLFGSLSNVGAMVGAISSGQISEYIGRKGSLMIAAIPNIIGWLAISFAKDPSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLSYLLGLFVNWRLLAVLGALPCLALIPGLFFIPESPRWLAKMGLTEDFETSLQVLRGFELILPMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60358" stop="60326"/>
                    <exon start="60217" stop="60134"/>
                    <exon start="60047" stop="59963"/>
                    <exon start="59370" stop="59324"/>
                    <exon start="59173" stop="59111"/>
                    <exon start="59029" stop="58970"/>
                    <exon start="58874" stop="58809"/>
                    <exon start="58714" stop="58655"/>
                    <exon start="58359" stop="58245"/>
                    <exon start="57965" stop="57853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADITNEVNEIKRSVASSTNRRTAMRFADLKHRRYWFPLMVGIGLLILQQLGGINGVIFYSSNIFLSAGISSSNAATFGVGAIQVVATAVSTWLVDRTGRRILLIVSSAGMAVSLLIVSVAFYLKGYVSEDSTLYGVLGIVSVVGVVFMIISFSLGMGPIPWLIMSEILPIKIKGLAGSTATLANWLFSWVITVTAPLLMAWSSGGTFTIYMVMCAFTVAFVAIWVPETKGRTLEEIQFSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="71393" PGL_stop="73122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71393" e_stop="71494"/>
            <exon e_start="72829" e_stop="73122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71393" e_stop="71494" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="71495" i_stop="72828" i_length="1334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72829" e_stop="73122" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71393" stop="71494"/>
              <exon start="72829" stop="73122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG : GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</gDNA_template>
            <first_frame> F  *  C  *  F  T  A  A  D  I  V  N  A  A  A  A  T  T  T  T  S  A  V  L  G  S  Y  *  W  D  S  *  C  W  :  E  L  S  D  L  R  V  *  G  C  E  Q  P  S  *  I  I  *  G  A  K  D  A  N  Q  A  *  V  *  I  W  W  N  L  R  A  C  *  L  E  K  S  G  S  N  E  D  T  L  S  Y  A  F  H  I  L  N  M  Y  C  T  R  L  F  H  L  R  L  Y  *  N  F  V  Y  T  H  S  *  N  K  G  *  K  M  K  H  K  S  I  E  V  K  I  F  L  I  W  F </first_frame>
            <second_frame>  S  N  V  S  L  Q  Q  Q  I  L  S  M  Q  Q  Q  Q  Q  Q  Q  H  Q  Q  F  L  D  P  I  N  G  I  L  N  V  G :   S  *  V  I  *  G  S  K  D  A  N  N  Q  A  K  *  F  K  G  L  R  M  Q  T  K  L  K  Y  E  S  G  G  I  *  E  L  A  N  W  K  R  A  G  P  M  K  T  H  *  V  M  P  F  I  F  S  T  C  T  A  H  V  Y  S  I  Y  V  Y  I  K  I  L  C  I  H  I  L  E  I  K  V  E  K  *  N  I  K  V  L  K  *  K  S  F  L  F  G   </second_frame>
            <third_frame>   L  M  L  V  Y  S  S  R  Y  C  Q  C  S  S  S  N  N  N  N  I  S  S  S  W  I  L  L  M  G  F  L  M  L   : G  A  K  *  F  K  G  L  R  M  R  T  T  K  L  N  N  L  R  G  *  G  C  K  P  S  L  S  M  N  L  V  E  F  K  S  L  L  I  G  K  E  R  V  Q  *  R  H  T  K  L  C  L  S  Y  S  Q  H  V  L  H  T  F  I  P  S  T  F  I  L  K  F  C  V  Y  T  F  L  K  *  R  L  K  N  E  T  *  K  Y  *  S  E  N  L  S  Y  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="75470" PGL_stop="76077"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75470" e_stop="76077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="75470" e_stop="76077" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75470" stop="76077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</gDNA_template>
            <first_frame> F  Q  G  Q  R  V  C  *  H  P  R  V  H  L  S  I  V  L  G  F  G  L  N  *  Y  Q  S  S  R  Q  L  A  L  L  F  L  H  L  L  C  L  S  C  *  N  V  V  I  L  R  Q  R  L  Q  E  L  L  A  I  L  L  V  C  *  A  *  *  I  *  S  S  L  T  S  Q  F  T  M  I  L  S  K  N  L  L  K  F  L  G  L  L  G  *  I  L  W  Q  F  L  L  H  M  A  *  L  R  M  A  H  L  F  Q  H  H  G  E  V  V  S  L  T  N  F  R  R  I  K  S  S  C  Q  V  L  G  L  M  K  T  K  *  T  L  K  F  L  L  *  M  K  I  Q  M  R  L  L  K  M  E  L  K  V  K  Y  G  F  H  L  L  A  M  L  L  D  I  *  H  I  P  L  *  L  N  K  C  S  T  P  R  L  K  T  R  R  E  N  A  M  F  E  Q  G  I   </first_frame>
            <second_frame>  F  R  G  N  V  C  V  D  I  P  E  Y  I  C  Q  S  S  *  D  L  A  *  I  D  I  R  V  Q  G  N  L  H  S  C  S  F  I  C  F  A  S  R  V  E  T  W  S  Y  *  G  N  G  Y  R  N  C  *  Q  S  Y  *  Y  V  E  L  D  E  F  D  H  R  *  R  A  N  L  Q  *  F  Y  R  R  I  C  *  S  F  *  A  F  W  A  K  S  F  G  N  F  S  F  I  W  L  S  *  E  W  H  I  C  F  N  I  M  E  K  *  *  V  *  Q  I  F  D  V  *  K  A  L  A  K  C  *  A  *  *  R  P  S  R  H  *  N  S  C  C  E  *  R  Y  K  *  D  C  *  R  W  N  *  R  *  N  M  D  F  I  S  *  Q  C  Y  W  I  F  S  T  S  L  S  N  S  T  S  V  Q  R  H  A  *  K  Q  G  G  K  M  L  C  S  N  R  G  *  </second_frame>
            <third_frame>   S  G  A  T  C  V  L  T  S  P  S  T  F  V  N  R  P  R  I  W  L  E  L  I  S  E  F  K  A  T  C  T  P  V  P  S  F  A  L  P  L  V  L  K  R  G  H  T  E  A  T  V  T  G  T  V  S  N  P  I  S  M  L  S  L  M  N  L  I  I  V  N  E  P  I  Y  N  D  S  I  E  E  F  V  E  V  F  R  P  F  G  L  N  P  L  A  I  S  P  S  Y  G  L  A  E  N  G  T  F  V  S  T  S  W  R  S  S  K  F  N  K  F  S  T  Y  K  K  L  L  P  S  A  R  L  D  E  D  Q  V  D  I  E  I  L  V  V  N  E  D  T  N  E  I  V  E  D  G  I  E  G  E  I  W  I  S  S  P  S  N  A  I  G  Y  L  A  H  P  S  L  T  Q  Q  V  F  N  A  T  L  K  N  K  A  G  K  C  Y  V  R  T  G  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75472" stop="76077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGATCVLTSPSTFVNRPRIWLELISEFKATCTPVPSFALPLVLKRGHTEATVTGTVSNPISMLSLMNLIIVNEPIYNDSIEEFVEVFRPFGLNPLAISPSYGLAENGTFVSTSWRSSKFNKFSTYKKLLPSARLDEDQVDIEILVVNEDTNEIVEDGIEGEIWISSPSNAIGYLAHPSLTQQVFNATLKNKAGKCYVRTGDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="78728" PGL_stop="78375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78728" e_stop="78375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78728" e_stop="78375" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78728" stop="78375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</gDNA_template>
            <first_frame> M  L  K  Y  K  D  F  A  H  K  L  E  S  R  D  R  F  L  R  F  G  C  I  I  I  R  T  L  L  L  L  K  K  I  *  Y  K  K  I  N  L  N  *  F  C  L  I  K  V  L  R  E  K  M  K  L  N  F  L  G  F  G  L  C  L  C  N  L  T  R  N  R  T  *  L  V  F  F  V  F  F  L  G  G  S  M  *  Y  Y  C  N  Y  M  E  P  L  N  *  I  F  I  F  I  N  C  C  T  L  E  P  L  F  I  *  K  F  S  A </first_frame>
            <second_frame>  C  *  S  T  K  I  L  L  T  S  W  S  Q  E  T  G  F  *  G  L  D  A  *  *  *  E  P  F  F  C  *  K  K  Y  N  T  R  R  S  T  L  I  N  F  V  *  L  R  F  *  G  K  K  *  N  *  I  S  W  D  L  V  Y  A  Y  V  I  L  L  G  I  V  R  S  *  F  F  L  F  F  F  W  G  G  L  C  S  I  I  V  T  I  W  N  H  L  I  R  F  L  F  L  L  I  V  V  L  W  N  L  Y  S  S  E  N  F  Q   </second_frame>
            <third_frame>   A  E  V  Q  R  F  C  S  Q  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  N  K  N  P  S  S  A  K  K  N  I  I  Q  E  D  Q  P  *  L  I  L  F  N  *  G  F  E  G  K  N  E  I  K  F  L  G  I  W  F  M  L  M  *  S  Y  *  E  S  Y  V  A  S  F  F  C  F  F  F  G  G  V  Y  V  V  L  L  *  L  Y  G  T  T  *  L  D  F  Y  F  Y  *  L  L  Y  F  G  T  F  I  H  L  K  I  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="80360" PGL_stop="80188"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80360" e_stop="80188"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="80360" e_stop="80188" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80360" stop="80188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCATCCTCCTTTCATTTCTTCAATTTCACACCCCCCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</gDNA_template>
            <first_frame> P  I  L  L  S  F  L  Q  F  H  T  P  P  H  N  I  R  H  R  V  R  V  S  F  F  F  F  L  N  *  Q  K  K  K  N  H  G  I  R  W  W  *  *  G  K  R  D  E  N  F  R  F  S  K  Y  R  S   </first_frame>
            <second_frame>  P  S  S  F  H  F  F  N  F  T  P  P  H  I  T  L  D  I  G  L  G  F  L  F  F  F  F  *  I  N  K  K  K  K  I  M  A  L  G  G  G  N  E  E  K  E  M  R  I  S  G  F  Q  N  I  D  L  </second_frame>
            <third_frame>   H  P  P  F  I  S  S  I  S  H  P  P  T  *  H  *  T  *  G  *  G  F  F  F  F  F  F  K  L  T  K  K  K  K  S  W  H  *  V  V  V  M  R  K  K  R  *  E  F  Q  V  F  K  I  *  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="92172" PGL_stop="93148"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92172" e_stop="93148"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="92172" e_stop="93148" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92172" stop="93148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</gDNA_template>
            <first_frame> L  A  K  I  K  C  S  I  C  S  Y  Q  F  N  I  *  Y  V  N  Q  *  F  T  R  Y  *  L  N  F  L  R  G  E  F  I  K  V  A  C  Y  L  G  S  R  V  S  P  M  R  C  T  T  A  W  A  W  H  T  P  P  N  L  L  Q  I  F  W  L  I  Y  C  V  M  *  S  N  S  N  L  S  V  D  I  L  C  N  V  F  L  L  C  L  Y  I  L  I  F  I  Y  L  I  L  Y  N  F  K  C  R  V  W  A  *  A  K  L  D  L  Q  R  N  I  I  L  V  K  I  E  H  C  F  *  I  L  F  D  N  L  K  V  N  N  E  Y  C  C  G  F  A  N  I  V  F  Q  *  *  S  P  L  M  N  *  L  S  C  F  T  S  P  V  C  *  S  T  T  A  L  T  I  S  A  T  E  I  M  P  T  T  F  P  S  I  T  G  T  C  R  M  W  C  S  V  I  I  K  R  S  I  T  F  P  *  C  I  K  H  Q  *  L  R  E  L  E  L  I  L  T  T  H  E  L  H  C  L  K  N  V  C  V  R  C  D  G  Y  Q  L  A  L  L  Q  W  *  Y  *  Y  L  S  T  K  Q  K  T  D  E  K  K  I  K  P  G  R  P  I  S  I  E  Y  L  L  G  H  N  I  S  D  S  C  V  F  R  *  S  I  L  Y  N  Y  L  S  Q  I  I  C  T  S  L  V  Q  C  A  *  M  N  K  F  N  I  V  C  I  T  K  D  Q  L  E   </first_frame>
            <second_frame>  W  L  R  S  S  V  V  S  V  L  I  S  L  I  S  D  M  *  I  N  D  S  H  D  I  N  S  I  F  *  G  E  S  S  S  R  *  L  A  T  W  A  L  V  C  R  L  C  V  A  L  L  H  G  P  G  T  P  H  Q  I  Y  F  K  S  F  G  *  Y  I  V  *  C  N  L  I  Q  I  F  R  L  I  Y  C  V  M  C  S  Y  Y  V  Y  T  Y  L  Y  L  F  I  *  F  Y  I  I  L  N  V  V  Y  G  H  K  L  S  *  I  Y  S  E  I  *  F  W  L  K  L  N  T  V  F  R  S  C  L  T  I  *  K  L  T  M  S  I  V  V  A  L  L  I  L  F  F  S  S  N  L  L  *  *  I  D  *  V  A  S  L  L  Q  F  V  D  P  P  L  L  *  Q  Y  P  P  Q  K  S  C  L  L  P  S  H  R  S  L  E  H  V  V  C  G  A  L  *  S  *  N  V  P  S  H  F  H  S  A  L  S  I  S  N  F  A  S  *  N  *  Y  L  P  L  M  S  C  I  A  *  R  M  F  V  S  D  V  T  V  I  S  L  L  C  C  N  G  S  T  N  I  *  A  Q  N  R  R  Q  M  K  K  R  *  S  Q  E  D  R  Y  L  *  S  T  C  S  V  I  I  S  P  T  L  V  Y  L  D  D  L  S  C  T  I  T  F  R  K  *  S  V  R  L  L  Y  N  V  H  R  *  I  S  S  T  L  C  V  L  L  K  I  N  *  R  </second_frame>
            <third_frame>   G  *  D  Q  V  *  Y  L  F  L  S  V  *  Y  L  I  C  E  S  M  I  H  T  I  L  T  Q  F  F  K  G  R  V  H  Q  G  S  L  L  L  G  L  S  C  V  A  Y  A  L  H  Y  C  M  G  L  A  H  P  T  K  S  T  S  N  L  L  V  D  I  L  C  N  V  I  *  F  K  S  F  G  *  Y  I  V  *  C  V  L  I  M  F  I  H  T  Y  I  Y  L  F  N  F  I  *  F  *  M  S  C  M  G  I  S  *  V  R  F  T  A  K  Y  N  F  G  *  N  *  T  L  F  L  D  L  V  *  Q  F  E  S  *  Q  *  V  L  L  W  L  C  *  Y  C  F  S  V  V  I  S  F  D  E  L  I  E  L  L  H  F  S  S  L  L  I  H  H  C  F  D  N  I  R  H  R  N  H  A  Y  Y  L  P  I  D  H  W  N  M  S  Y  V  V  L  C  D  H  K  T  F  H  H  I  S  I  V  H  *  A  S  V  T  S  R  V  R  T  N  T  Y  H  S  *  A  A  L  L  E  E  C  L  C  P  M  *  R  L  S  A  C  S  V  A  M  V  V  L  I  F  E  H  K  T  E  D  R  *  K  K  D  K  A  R  K  T  D  I  Y  R  V  P  A  R  S  *  Y  L  R  L  L  C  I  *  M  I  Y  P  V  Q  L  P  F  A  N  N  L  Y  V  S  C  T  M  C  I  D  E  *  V  Q  H  C  V  Y  Y  *  R  S  I  R  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92618" stop="92812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCFSVVISFDELIELLHFSSLLIHHCFDNIRHRNHAYYLPIDHWNMSYVVLCDHKTFHHISIVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="103605" PGL_stop="105116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103605" e_stop="103720"/>
            <exon e_start="103826" e_stop="103950"/>
            <exon e_start="104055" e_stop="104155"/>
            <exon e_start="104670" e_stop="105116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103605" e_stop="103720" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103721" i_stop="103825" i_length="105"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="103826" e_stop="103950" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="103951" i_stop="104054" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104055" e_stop="104155" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="104156" i_stop="104669" i_length="514"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="104670" e_stop="105116" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103605" stop="103720"/>
              <exon start="103826" stop="103950"/>
              <exon start="104055" stop="104155"/>
              <exon start="104670" stop="105116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313896" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTAATTAACTGTGTGTTAAGTTTAATTAAGAAGTTAATTAGCAACAAAAAGAGATAATTATGGGTTCTCTTATGGCAGGTTGGGACTCTCCTGTTTCTGATCCTCAAGCTA : TGAAATTACGAACAAATAAGTCATTAACAAAGAAAGAGATAGATGCATATTGGAGATCAAAAAAACTAATTGAAGAAGAGCATCAAAAATATATCTCTACGTTATCCCCTCGAAGCCAAAAACAG : GCGAATATTGTATTTGAGGAGGCAACTAAAACAGCGGAAGAAAGTCTTTCTAATTTGGAAAATGAGGAAAGTTTGGATCAACTAATCAGGAAAAATGGATG : GTGGATAAGTAGCAATTGGGCACATTTAAATGAGCCACCAGTAGAAGTACGAGAAGGTCCAGCTTACAAATACGTGTCACAATTTCACGTAGCCAACATGGCTACTGGGTCCAACACTAAACCCGGTCCAGCCGGAATCAACGCTTGAACCGTCGTTTGGCTTTAGACCGGTTTGCTAATAAGTACTAGTATAGTACTTTTTTTAGGTTAATTTTAATTTTTTTTTATGACAAATTACTTTTAATTTTATTTGCGAAAGTATTTGTATTTGAGTTGATATTTAGAGTTTGCGTTAAGAGATGTCGATACTTGTAATGTTGGGACATACATACATGTCGTTGTAATATATTTTTTGTGCTTTCTTCGATAAAAGTTAAAGTATATTAATATTTTGATGTGATATATTTTTTTCTGCAAATTTTATAAAATTTAATTTGTAGAATGTAA</gDNA_template>
            <first_frame> *  N  *  L  T  V  C  *  V  *  L  R  S  *  L  A  T  K  R  D  N  Y  G  F  S  Y  G  R  L  G  L  S  C  F  *  S  S  S  Y :   E  I  T  N  K  *  V  I  N  K  E  R  D  R  C  I  L  E  I  K  K  T  N  *  R  R  A  S  K  I  Y  L  Y  V  I  P  S  K  P  K  T   : G  E  Y  C  I  *  G  G  N  *  N  S  G  R  K  S  F  *  F  G  K  *  G  K  F  G  S  T  N  Q  E  K  W  M  :  V  D  K  *  Q  L  G  T  F  K  *  A  T  S  R  S  T  R  R  S  S  L  Q  I  R  V  T  I  S  R  S  Q  H  G  Y  W  V  Q  H  *  T  R  S  S  R  N  Q  R  L  N  R  R  L  A  L  D  R  F  A  N  K  Y  *  Y  S  T  F  F  R  L  I  L  I  F  F  Y  D  K  L  L  L  I  L  F  A  K  V  F  V  F  E  L  I  F  R  V  C  V  K  R  C  R  Y  L  *  C  W  D  I  H  T  C  R  C  N  I  F  F  V  L  S  S  I  K  V  K  V  Y  *  Y  F  D  V  I  Y  F  F  L  Q  I  L  *  N  L  I  C  R  M  * </first_frame>
            <second_frame>  E  I  N  *  L  C  V  K  F  N  *  E  V  N  *  Q  Q  K  E  I  I  M  G  S  L  M  A  G  W  D  S  P  V  S  D  P  Q  A   : M  K  L  R  T  N  K  S  L  T  K  K  E  I  D  A  Y  W  R  S  K  K  L  I  E  E  E  H  Q  K  Y  I  S  T  L  S  P  R  S  Q  K  Q  :  A  N  I  V  F  E  E  A  T  K  T  A  E  E  S  L  S  N  L  E  N  E  E  S  L  D  Q  L  I  R  K  N  G  W :   W  I  S  S  N  W  A  H  L  N  E  P  P  V  E  V  R  E  G  P  A  Y  K  Y  V  S  Q  F  H  V  A  N  M  A  T  G  S  N  T  K  P  G  P  A  G  I  N  A  *  T  V  V  W  L  *  T  G  L  L  I  S  T  S  I  V  L  F  L  G  *  F  *  F  F  F  M  T  N  Y  F  *  F  Y  L  R  K  Y  L  Y  L  S  *  Y  L  E  F  A  L  R  D  V  D  T  C  N  V  G  T  Y  I  H  V  V  V  I  Y  F  L  C  F  L  R  *  K  L  K  Y  I  N  I  L  M  *  Y  I  F  F  C  K  F  Y  K  I  *  F  V  E  C   </second_frame>
            <third_frame>   K  L  I  N  C  V  L  S  L  I  K  K  L  I  S  N  K  K  R  *  L  W  V  L  L  W  Q  V  G  T  L  L  F  L  I  L  K  L  :  *  N  Y  E  Q  I  S  H  *  Q  R  K  R  *  M  H  I  G  D  Q  K  N  *  L  K  K  S  I  K  N  I  S  L  R  Y  P  L  E  A  K  N  R :   R  I  L  Y  L  R  R  Q  L  K  Q  R  K  K  V  F  L  I  W  K  M  R  K  V  W  I  N  *  S  G  K  M  D   : G  G  *  V  A  I  G  H  I  *  M  S  H  Q  *  K  Y  E  K  V  Q  L  T  N  T  C  H  N  F  T  *  P  T  W  L  L  G  P  T  L  N  P  V  Q  P  E  S  T  L  E  P  S  F  G  F  R  P  V  C  *  *  V  L  V  *  Y  F  F  *  V  N  F  N  F  F  L  *  Q  I  T  F  N  F  I  C  E  S  I  C  I  *  V  D  I  *  S  L  R  *  E  M  S  I  L  V  M  L  G  H  T  Y  M  S  L  *  Y  I  F  C  A  F  F  D  K  S  *  S  I  L  I  F  *  C  D  I  F  F  S  A  N  F  I  K  F  N  L  *  N  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103651" stop="103720"/>
                    <exon start="103826" stop="103950"/>
                    <exon start="104055" stop="104155"/>
                    <exon start="104670" stop="104817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QQKEIIMGSLMAGWDSPVSDPQAMKLRTNKSLTKKEIDAYWRSKKLIEEEHQKYISTLSPRSQKQANIVFEEATKTAEESLSNLENEESLDQLIRKNGWWISSNWAHLNEPPVEVREGPAYKYVSQFHVANMATGSNTKPGPAGINA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="111181" PGL_stop="110740"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111181" e_stop="110740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="111181" e_stop="110740" e_length="442"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111181" stop="110740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343981" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCTCTCCATGTAAATTAAGATTTTTTTTATTTCATTGTTAATCTTTCTATTATTGTAGGATCGAAATTATTTTGTGGCATAACTCAACGAAGAAGGCTCTTGGATGTTAGTTTGCCAAAAGGGATGTCGGATAAGAGTAACAAAAATTGTGCATTGATTATACATTATTATTTTTATGTATTTTCTTATGATTAAGGTCCTAAGGAACTAAGAAAGATAGATGTGTTGTGTGTTCTCTCCATGTAACTCAAGATTATTTTTTTTATTTTATTGTTAATATTTATAAATATTATTATTATTATAGGATCACATTCATCTTTTAGCATAACTCGATGAAGAAGACTTTTAAATGTTGATTAGTCTGTCAAAAAGGATGTAGGACAAAAGTTCAAAAAAACTGTGCATCGATCTATATTTTTATTTTTCATTTATTTTCTT</gDNA_template>
            <first_frame> L  F  S  P  C  K  L  R  F  F  L  F  H  C  *  S  F  Y  Y  C  R  I  E  I  I  L  W  H  N  S  T  K  K  A  L  G  C  *  F  A  K  R  D  V  G  *  E  *  Q  K  L  C  I  D  Y  T  L  L  F  L  C  I  F  L  *  L  R  S  *  G  T  K  K  D  R  C  V  V  C  S  L  H  V  T  Q  D  Y  F  F  Y  F  I  V  N  I  Y  K  Y  Y  Y  Y  Y  R  I  T  F  I  F  *  H  N  S  M  K  K  T  F  K  C  *  L  V  C  Q  K  G  C  R  T  K  V  Q  K  N  C  A  S  I  Y  I  F  I  F  H  L  F  S  </first_frame>
            <second_frame>  C  S  L  H  V  N  *  D  F  F  Y  F  I  V  N  L  S  I  I  V  G  S  K  L  F  C  G  I  T  Q  R  R  R  L  L  D  V  S  L  P  K  G  M  S  D  K  S  N  K  N  C  A  L  I  I  H  Y  Y  F  Y  V  F  S  Y  D  *  G  P  K  E  L  R  K  I  D  V  L  C  V  L  S  M  *  L  K  I  I  F  F  I  L  L  L  I  F  I  N  I  I  I  I  I  G  S  H  S  S  F  S  I  T  R  *  R  R  L  L  N  V  D  *  S  V  K  K  D  V  G  Q  K  F  K  K  T  V  H  R  S  I  F  L  F  F  I  Y  F  L </second_frame>
            <third_frame>   V  L  S  M  *  I  K  I  F  F  I  S  L  L  I  F  L  L  L  *  D  R  N  Y  F  V  A  *  L  N  E  E  G  S  W  M  L  V  C  Q  K  G  C  R  I  R  V  T  K  I  V  H  *  L  Y  I  I  I  F  M  Y  F  L  M  I  K  V  L  R  N  *  E  R  *  M  C  C  V  F  S  P  C  N  S  R  L  F  F  L  F  Y  C  *  Y  L  *  I  L  L  L  L  *  D  H  I  H  L  L  A  *  L  D  E  E  D  F  *  M  L  I  S  L  S  K  R  M  *  D  K  S  S  K  K  L  C  I  D  L  Y  F  Y  F  S  F  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0124K05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="112098" PGL_stop="114151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112098" e_stop="112364"/>
            <exon e_start="112456" e_stop="112590"/>
            <exon e_start="113059" e_stop="113296"/>
            <exon e_start="113394" e_stop="113597"/>
            <exon e_start="113681" e_stop="114151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.992" acc_prob="0.581" e_score="1.000"/>
          <exon-intron don_prob="0.651" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="112098" e_stop="112364" e_length="267"/>
          </exon>
          <intron i_serial="1" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112365" i_stop="112455" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112456" e_stop="112590" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.581">
            <gDNA_intron_boundary i_start="112591" i_stop="113058" i_length="468"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="113059" e_stop="113296" e_length="238"/>
          </exon>
          <intron i_serial="3" don_prob="0.651" acc_prob="1.000">
            <gDNA_intron_boundary i_start="113297" i_stop="113393" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="113394" e_stop="113597" e_length="204"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="113598" i_stop="113680" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="113681" e_stop="114151" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112098" stop="112364"/>
              <exon start="112456" stop="112590"/>
              <exon start="113059" stop="113296"/>
              <exon start="113394" stop="113597"/>
              <exon start="113681" stop="114151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTACACAAAACAACACAACTAAATTCTTGAGAAAGTTCTTTAATTTTCAAATCAAAATCTCTTTTAAGTTTTATTTTTATCAAATGGCTGAGAAAAGCAAAGTTTTGATTATTGGAGGAACAGGGTATATTGGTAAATTTGTAGTTGAAGCTAGTGCAAAATCTGGACACCCAACTTTTGCTTTAGTTAGAGAGACCACAGTTTCTGATCCTGATAAGGGCAAAATTGTTGAAAATTTCAAGAATTTGGGTGTCACTATTATTAAT : GGTGATTTGTATGATCATGAGAGTTTGCTGAAGGCTATAAAACAAGTGGATGTGGTGATATCAACTGTTGGTGCAATGCAATTGGCTGATCAAGTTAAGATTATTGATGCTATTAAAGAAGCTGGCAATATTAAG : AGGTTCTTCCCTTCGGAGTTTGGTATGGATGTCGATAAGATCAATGCTGTGGAGCCAGCAAAGTCTACATTTGCTGTGAAAGTTCAAATCCGAAGAGCTATTGAGGCTGCAGAAATTCCCTATACTAATGTCTCATGTAACTATTTTGCTGGTTATTTCTTACCAACTTTGGTCCAGCCAGGAGTCACTGCTCCTCCTCGAGACAAAGTCATCATTCCCGGAGATGGAAATGTTAAGG : CTGTATTCAATGAAGAACATGATATTGGCACCTACACCATTAAGGCTATTGATGACCCGAGAACGTTGAACAAGACCCTTTACATCAGGCCTCTCAAGAACACCTTATCGTTCAACGAGCTTGTGGCTATATGGGAGAAACTGATTGGTAAAACTCTCGAGAAAATCTACGTTCCAGAGGAGCAAATTCTCAAAGACATCCAGA : CATCTCCAATACCAATCAATATCATACTAGCAATCAACCACTCAACATTCGTGAAGGGTGATCAAACCAATTTTGAGATAGAGCCATCGTTTGGGGTAGAGGCCTCGGAACTTTATCCAGATGTTAAGTACACTACAGTGGAGGAGTACCTTGGCCACTTTGTCTAAACCACACCTTTGAGGTCTCCGATCGTTCAAATAAACTGTTAGATGATGAGTGTTATCAGACATTTTATCTGGAAGTATGAGTACTTGTTCACTATGTCATCGGAGACACGTTGAATGGTATGTTTTTAAGTCTGTTTTTAGTGTCCACACTGTGTAGTACTATAATGAAGCTACAGAAAATGGATTGTTGCATTGTTGCTCTACCATCTTGTACAAGTTTTAAGGTGTGATGTAATATGCAAAAGCTTGTTGTCAATAAGGATCAATCAAAGAGGACTCTATTTCAGTTTTCTTATGAATTCAG</gDNA_template>
            <first_frame> C  T  Q  N  N  T  T  K  F  L  R  K  F  F  N  F  Q  I  K  I  S  F  K  F  Y  F  Y  Q  M  A  E  K  S  K  V  L  I  I  G  G  T  G  Y  I  G  K  F  V  V  E  A  S  A  K  S  G  H  P  T  F  A  L  V  R  E  T  T  V  S  D  P  D  K  G  K  I  V  E  N  F  K  N  L  G  V  T  I  I  N  :  G  D  L  Y  D  H  E  S  L  L  K  A  I  K  Q  V  D  V  V  I  S  T  V  G  A  M  Q  L  A  D  Q  V  K  I  I  D  A  I  K  E  A  G  N  I  K  :  R  F  F  P  S  E  F  G  M  D  V  D  K  I  N  A  V  E  P  A  K  S  T  F  A  V  K  V  Q  I  R  R  A  I  E  A  A  E  I  P  Y  T  N  V  S  C  N  Y  F  A  G  Y  F  L  P  T  L  V  Q  P  G  V  T  A  P  P  R  D  K  V  I  I  P  G  D  G  N  V  K   : A  V  F  N  E  E  H  D  I  G  T  Y  T  I  K  A  I  D  D  P  R  T  L  N  K  T  L  Y  I  R  P  L  K  N  T  L  S  F  N  E  L  V  A  I  W  E  K  L  I  G  K  T  L  E  K  I  Y  V  P  E  E  Q  I  L  K  D  I  Q   : T  S  P  I  P  I  N  I  I  L  A  I  N  H  S  T  F  V  K  G  D  Q  T  N  F  E  I  E  P  S  F  G  V  E  A  S  E  L  Y  P  D  V  K  Y  T  T  V  E  E  Y  L  G  H  F  V  *  T  T  P  L  R  S  P  I  V  Q  I  N  C  *  M  M  S  V  I  R  H  F  I  W  K  Y  E  Y  L  F  T  M  S  S  E  T  R  *  M  V  C  F  *  V  C  F  *  C  P  H  C  V  V  L  *  *  S  Y  R  K  W  I  V  A  L  L  L  Y  H  L  V  Q  V  L  R  C  D  V  I  C  K  S  L  L  S  I  R  I  N  Q  R  G  L  Y  F  S  F  L  M  N  S  </first_frame>
            <second_frame>  V  H  K  T  T  Q  L  N  S  *  E  S  S  L  I  F  K  S  K  S  L  L  S  F  I  F  I  K  W  L  R  K  A  K  F  *  L  L  E  E  Q  G  I  L  V  N  L  *  L  K  L  V  Q  N  L  D  T  Q  L  L  L  *  L  E  R  P  Q  F  L  I  L  I  R  A  K  L  L  K  I  S  R  I  W  V  S  L  L  L  M :   V  I  C  M  I  M  R  V  C  *  R  L  *  N  K  W  M  W  *  Y  Q  L  L  V  Q  C  N  W  L  I  K  L  R  L  L  M  L  L  K  K  L  A  I  L  R :   G  S  S  L  R  S  L  V  W  M  S  I  R  S  M  L  W  S  Q  Q  S  L  H  L  L  *  K  F  K  S  E  E  L  L  R  L  Q  K  F  P  I  L  M  S  H  V  T  I  L  L  V  I  S  Y  Q  L  W  S  S  Q  E  S  L  L  L  L  E  T  K  S  S  F  P  E  M  E  M  L  R  :  L  Y  S  M  K  N  M  I  L  A  P  T  P  L  R  L  L  M  T  R  E  R  *  T  R  P  F  T  S  G  L  S  R  T  P  Y  R  S  T  S  L  W  L  Y  G  R  N  *  L  V  K  L  S  R  K  S  T  F  Q  R  S  K  F  S  K  T  S  R  :  H  L  Q  Y  Q  S  I  S  Y  *  Q  S  T  T  Q  H  S  *  R  V  I  K  P  I  L  R  *  S  H  R  L  G  *  R  P  R  N  F  I  Q  M  L  S  T  L  Q  W  R  S  T  L  A  T  L  S  K  P  H  L  *  G  L  R  S  F  K  *  T  V  R  *  *  V  L  S  D  I  L  S  G  S  M  S  T  C  S  L  C  H  R  R  H  V  E  W  Y  V  F  K  S  V  F  S  V  H  T  V  *  Y  Y  N  E  A  T  E  N  G  L  L  H  C  C  S  T  I  L  Y  K  F  *  G  V  M  *  Y  A  K  A  C  C  Q  *  G  S  I  K  E  D  S  I  S  V  F  L  *  I  Q </second_frame>
            <third_frame>   Y  T  K  Q  H  N  *  I  L  E  K  V  L  *  F  S  N  Q  N  L  F  *  V  L  F  L  S  N  G  *  E  K  Q  S  F  D  Y  W  R  N  R  V  Y  W  *  I  C  S  *  S  *  C  K  I  W  T  P  N  F  C  F  S  *  R  D  H  S  F  *  S  *  *  G  Q  N  C  *  K  F  Q  E  F  G  C  H  Y  Y  *   : W  *  F  V  *  S  *  E  F  A  E  G  Y  K  T  S  G  C  G  D  I  N  C  W  C  N  A  I  G  *  S  S  *  D  Y  *  C  Y  *  R  S  W  Q  Y  *   : E  V  L  P  F  G  V  W  Y  G  C  R  *  D  Q  C  C  G  A  S  K  V  Y  I  C  C  E  S  S  N  P  K  S  Y  *  G  C  R  N  S  L  Y  *  C  L  M  *  L  F  C  W  L  F  L  T  N  F  G  P  A  R  S  H  C  S  S  S  R  Q  S  H  H  S  R  R  W  K  C  *  G :   C  I  Q  *  R  T  *  Y  W  H  L  H  H  *  G  Y  *  *  P  E  N  V  E  Q  D  P  L  H  Q  A  S  Q  E  H  L  I  V  Q  R  A  C  G  Y  M  G  E  T  D  W  *  N  S  R  E  N  L  R  S  R  G  A  N  S  Q  R  H  P  D :   I  S  N  T  N  Q  Y  H  T  S  N  Q  P  L  N  I  R  E  G  *  S  N  Q  F  *  D  R  A  I  V  W  G  R  G  L  G  T  L  S  R  C  *  V  H  Y  S  G  G  V  P  W  P  L  C  L  N  H  T  F  E  V  S  D  R  S  N  K  L  L  D  D  E  C  Y  Q  T  F  Y  L  E  V  *  V  L  V  H  Y  V  I  G  D  T  L  N  G  M  F  L  S  L  F  L  V  S  T  L  C  S  T  I  M  K  L  Q  K  M  D  C  C  I  V  A  L  P  S  C  T  S  F  K  V  *  C  N  M  Q  K  L  V  V  N  K  D  Q  S  K  R  T  L  F  Q  F  S  Y  E  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112098" stop="112364"/>
                    <exon start="112456" stop="112590"/>
                    <exon start="113059" stop="113296"/>
                    <exon start="113394" stop="113597"/>
                    <exon start="113681" stop="113847"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTQNNTTKFLRKFFNFQIKISFKFYFYQMAEKSKVLIIGGTGYIGKFVVEASAKSGHPTFALVRETTVSDPDKGKIVENFKNLGVTIINGDLYDHESLLKAIKQVDVVISTVGAMQLADQVKIIDAIKEAGNIKRFFPSEFGMDVDKINAVEPAKSTFAVKVQIRRAIEAAEIPYTNVSCNYFAGYFLPTLVQPGVTAPPRDKVIIPGDGNVKAVFNEEHDIGTYTIKAIDDPRTLNKTLYIRPLKNTLSFNELVAIWEKLIGKTLEKIYVPEEQILKDIQTSPIPINIILAINHSTFVKGDQTNFEIEPSFGVEASELYPDVKYTTVEEYLGHFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="116780" PGL_stop="123006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116780" e_stop="117052"/>
            <exon e_start="119248" e_stop="119391"/>
            <exon e_start="120909" e_stop="121034"/>
            <exon e_start="121104" e_stop="121255"/>
            <exon e_start="122092" e_stop="123006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.935" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.987"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116780" e_stop="117052" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="117053" i_stop="119247" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119248" e_stop="119391" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119392" i_stop="120908" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="120909" e_stop="121034" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.935">
            <gDNA_intron_boundary i_start="121035" i_stop="121103" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="121104" e_stop="121255" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="121256" i_stop="122091" i_length="836"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="122092" e_stop="123006" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116780" stop="117052"/>
              <exon start="119248" stop="119391"/>
              <exon start="120909" stop="121034"/>
              <exon start="121104" stop="121255"/>
              <exon start="122092" stop="123006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> R  H  V  V  F  T  I  L  P  Y  Q  L  L  C  G  K  P  S  F  L  T  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  I  V  L  L  Y  M  A  A  P  L  R  M  R  P  S  L  V  W  G  P  H  C  L  M  V  F  M  *  R  N  M  P  W  L  L  Q  E  P  L  *  N  R  T  Q  G  F  P  P  E  R :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </first_frame>
            <second_frame>  G  M  W  Y  S  L  F  C  P  T  N  Y  S  V  E  S  L  H  F  S  L  N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   S  *  C  C  C  T  W  L  H  H  *  G  *  G  L  H  W  Y  G  G  H  T  A  *  W  C  S  C  R  E  T  C  H  G  C  C  R  S  P  C  E  T  E  H  K  D  S  L  R  R   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </second_frame>
            <third_frame>   A  C  G  I  H  Y  S  A  L  P  I  T  L  W  K  A  F  I  S  H  S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  H  S  A  V  V  H  G  C  T  I  E  D  E  A  F  I  G  M  G  A  T  L  L  D  G  V  H  V  E  K  H  A  M  V  A  A  G  A  L  V  K  Q  N  T  R  I  P  S  G  E  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116908" stop="117052"/>
                    <exon start="119248" stop="119391"/>
                    <exon start="120909" stop="121034"/>
                    <exon start="121104" stop="121255"/>
                    <exon start="122092" stop="122376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGHSAVVHGCTIEDEAFIGMGATLLDGVHVEKHAMVAAGALVKQNTRIPSGEVWAGNPAKFLRKLTDEEIAFIAQSATNYCNLARVHAAENSKSFDEIEFEKMLRKKYAKRDEEYDSMIGVVRETPPELVLPDNILPEKAAKSIAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="122568" PGL_stop="122267"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122568" e_stop="122267"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="122568" e_stop="122267" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122568" stop="122267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAAAGAGAGAGTTGCTTGGGCACTGATCTCATTGGGCGATGCTCTTAGCAGCTTTTTCGGGGAGGATATTATCAGGAAGTACAAGCTCGGGAGGTGTTTCACGGACAACACCAATCATAGAATCATATTCCTCATCAC</gDNA_template>
            <first_frame> L  K  N  F  W  E  I  R  G  K  S  L  N  Y  K  A  V  T  Y  R  C  Y  P  I  S  L  I  L  F  G  R  V  T  A  N  I  H  D  C  S  P  Y  R  C  S  R  C  K  I  N  L  W  K  A  K  K  E  R  V  A  W  A  L  I  S  L  G  D  A  L  S  S  F  F  G  E  D  I  I  R  K  Y  K  L  G  R  C  F  T  D  N  T  N  H  R  I  I  F  L  I   </first_frame>
            <second_frame>  *  R  I  S  G  K  *  G  A  K  V  L  T  T  K  Q  *  R  T  D  A  I  Q  *  V  *  Y  Y  L  E  G  *  Q  P  I  S  M  T  V  L  H  T  D  A  H  G  V  K  *  I  S  G  K  Q  K  K  R  E  L  L  G  H  *  S  H  W  A  M  L  L  A  A  F  S  G  R  I  L  S  G  S  T  S  S  G  G  V  S  R  T  T  P  I  I  E  S  Y  S  S  S  </second_frame>
            <third_frame>   E  E  F  L  G  N  K  G  Q  K  S  *  L  Q  S  S  D  V  P  M  L  S  N  K  F  D  I  I  W  K  G  N  S  Q  Y  P  *  L  F  S  I  Q  M  L  T  V  *  N  K  S  L  E  S  K  K  R  E  S  C  L  G  T  D  L  I  G  R  C  S  *  Q  L  F  R  G  G  Y  Y  Q  E  V  Q  A  R  E  V  F  H  G  Q  H  Q  S  *  N  H  I  P  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0124K05.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122568" stop="122269"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNFWEIRGKSLNYKAVTYRCYPISLILFGRVTANIHDCSPYRCSRCKINLWKAKKERVAWALISLGDALSSFFGEDIIRKYKLGRCFTDNTNHRIIFLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 39472 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 1973 bytes was the average size of a spliced alignment
$ 26064 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1533 bytes was the average size of a predicted gene location
$ 10 megabytes was the average size of the backtrace matrix
$ 52 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:53:14
-->
