<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:46:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E550666" ref_strand="+" ref_description="SGN-E550666 [TUS-11-O18]">
      <seq>ctcgtagaatgagagaatttcacaatatcaagattagccaggttgagttacttgttacatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaacaatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctagacaactaaccataacaaaagccaagaagctgattagacggcatacaaagaagttccgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13561" stop="14827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13861" g_stop="13901" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13991" g_stop="14527" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="578" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E550666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13861" e_stop="13901"/>
          <exon e_start="13991" e_stop="14527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAGGTCAGTTCATTATGTGAGTTAATAACTAATTGTAGTTTCGTCAGTTTTTCTGTTTTGGAACTAATACATGTTCAATATGCATGGGCTAGGTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCA</genome_strand>
        <mrna_strand>CTCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAG.........................................................................................GTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688329" ref_strand="+" ref_description="SGN-E688329 [t3_tus_11_o18]">
      <seq>ctcgtagaatgagagaatttcacaatatcaagattagccaggttgagttacttgttacatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaacaatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctagacaactaaccataacaaaagccaagaagctgattagacggcatacaaagaagttccgttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13561" stop="14827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13861" g_stop="13901" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13991" g_stop="14527" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="578" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E688329" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13861" e_stop="13901"/>
          <exon e_start="13991" e_stop="14527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAGGTCAGTTCATTATGTGAGTTAATAACTAATTGTAGTTTCGTCAGTTTTTCTGTTTTGGAACTAATACATGTTCAATATGCATGGGCTAGGTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCA</genome_strand>
        <mrna_strand>CTCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAG.........................................................................................GTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272798" ref_strand="+" ref_description="SGN-E272798 [cLEM-21-N4]">
      <seq>tcgtagaatgagagaatttcacaatatcaagattagccaggttgagttacttgttgcatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaacaatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctagacaactaaccataacaaaagccaagaagctgattagacggcatacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13562" stop="14816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13862" g_stop="13901" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.541" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13991" g_stop="14516" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="566" r_length="526" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E272798" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13862" e_stop="13901"/>
          <exon e_start="13991" e_stop="14516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAGGTCAGTTCATTATGTGAGTTAATAACTAATTGTAGTTTCGTCAGTTTTTCTGTTTTGGAACTAATACATGTTCAATATGCATGGGCTAGGTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGA</genome_strand>
        <mrna_strand>TCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAG.........................................................................................GTTGAGTTACTTGTTGCATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272525" ref_strand="+" ref_description="SGN-E272525 [cLEM-21-M17]">
      <seq>cgtagaatgagagaatttcaccaatatcaagattagccaggttgagttaccttgttccatatgaaggattaagatttgctgtgagtgatttgagattgcctgatggataccattccatcgtgttgaatttaccgggaaccctggccggaggctattctcaagagtcaagaagcaccatcatctggggagtcctaaaatctgtgaccaggaatgccagggaaagaagtttaaagataaagcaccatagtcataaggaaacttgtgcctcctggccgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatcccagccaaaatcctttatcctggccctaaccgtccccctgagggtgccaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaaccatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13563" stop="14766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13863" g_stop="13901" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89">
            <donor d_prob="0.990" d_score="0.95"/>
            <acceptor a_prob="0.541" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13991" g_stop="14466" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="531" r_length="491" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E272525" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13863" e_stop="13901"/>
          <exon e_start="13991" e_stop="14466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGAATGAGAGAATTTCA-CAATATCAAGATTAGCCAGGTCAGTTCATTATGTGAGTTAATAACTAATTGTAGTTTCGTCAGTTTTTCTGTTTTGGAACTAATACATGTTCAATATGCATGGGCTAGGTTGAGTTA-CTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTG-CTGATGGATA-CATTCCATCGTGTTGAATTTA-CGGGAA-CCTGG-CGGAGGCTATTCTCAAGAGTCAAGAAGCA-CATCATCTGGGGAGTCCTAAAATCTGTGA-CAGGAATG-CAGGGAAAGAAGTTTAAAGATAAAGCA-CATAGTCATAAGGAAACTTGTG-CTCCTGG-CGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAG-CAAAATCCTTTATCCTGG-CCTAAGCGTCCCGCTGAGGGTG-CAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAG</genome_strand>
        <mrna_strand>CGTAGAATGAGAGAATTTCACCAATATCAAGATTAGCCAG.........................................................................................GTTGAGTTACCTTGTTCCATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCCTGATGGATACCATTCCATCGTGTTGAATTTACCGGGAACCCTGGCCGGAGGCTATTCTCAAGAGTCAAGAAGCACCATCATCTGGGGAGTCCTAAAATCTGTGACCAGGAATGCCAGGGAAAGAAGTTTAAAGATAAAGCACCATAGTCATAAGGAAACTTGTGCCTCCTGGCCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCCAGCCAAAATCCTTTATCCTGGCCCTAACCGTCCCCCTGAGGGTGCCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACCATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274011" ref_strand="+" ref_description="SGN-E274011 [cLEN-8-K20]">
      <seq>ttagccaggttgagttacttgttacatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaacaatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctagacaactaaccataacaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13686" stop="14786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13894" g_stop="13901" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13991" g_stop="14486" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="504" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E274011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13894" e_stop="13901"/>
          <exon e_start="13991" e_stop="14486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCAGGTCAGTTCATTATGTGAGTTAATAACTAATTGTAGTTTCGTCAGTTTTTCTGTTTTGGAACTAATACATGTTCAATATGCATGGGCTAGGTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAG</genome_strand>
        <mrna_strand>TTAGCCAG.........................................................................................GTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274212" ref_strand="+" ref_description="SGN-E274212 [cLEN-8-J20]">
      <seq>ttagccaggttgagttacttgttacatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13686" stop="14632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13894" g_stop="13901" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.541" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13991" g_stop="14332" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="350" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E274212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13894" e_stop="13901"/>
          <exon e_start="13991" e_stop="14332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCCAGGTCAGTTCATTATGTGAGTTAATAACTAATTGTAGTTTCGTCAGTTTTTCTGTTTTGGAACTAATACATGTTCAATATGCATGGGCTAGGTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACC</genome_strand>
        <mrna_strand>TTAGCCAG.........................................................................................GTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697383" ref_strand="+" ref_description="SGN-E697383 [FA02CH01]">
      <seq>cgtttacttgttacatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaacaatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctagacaactaaccataacaaaagccaagaagctgattagacggcatacaaagaagttccgttcaagagcaccaaaaggtttatcttctcaacaaagagaatcacttccttcgtcaccaagagagaccaccccatttgaaagtgattcatctagtgaatcttcgccttatgaggatttccacgagtagatgagcttgaagacattgaaacgacgtgtgttatgggatccaaaatggactggagcaatccttggtcatatataatagtccggtatgacagcaattccaattgattaggatttggtgacatccttgtctcctacttagacagtatgagatgctcttcccaaatcctttggcaagaattgcgagaaaatgctgaaagaagtctacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13697" stop="15476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13994" g_stop="14540" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14541" i_stop="14857" i_length="317">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14858" g_stop="15176" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="866" r_length="319" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E697383" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13994" e_stop="14540"/>
          <exon e_start="14858" e_stop="15176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAGGTTGGTGAAGCTTTTTCGATGTTGAAATTATCCCGTTCTTTCTTTTGGAGTCCTATTATTTTCCTCTTGAGAAGACCTAATTCGGATGCCATTCTTCCCTCTCTCTGGAGCCAGCAGAATCCAGCATTAATAGTTTGTTCAAAACACACAATTTTATGATGTGTAGGTTGCTTAGTCACAGTTGATATTACAGTCCCTAGTTCGGGCTGACAGTGTGGTCCGTTACTTTTTAAACTACACTTTGAAGTATAATTTTTGAGTCCCAATCTGTATTTGGTATCTATTAAAAGATTGTTACTGACACAAGACCTTTCCAGGTTTATCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCGTTGGTCATATATAATAGTCCGGTACGATAGCAATTCCAATTGATTAGGATTTGGTGACATCCTTGTCTCCTACTTAGACAGTATGAGATGCTCTTCCAAAATCCTTTGGCAAGAATTGCGAGAAAATGCTGAAAGAAGTCTACAATTA</genome_strand>
        <mrna_strand>CGTTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAG.............................................................................................................................................................................................................................................................................................................................GTTTATCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCCTTGGTCATATATAATAGTCCGGTATGACAGCAATTCCAATTGATTAGGATTTGGTGACATCCTTGTCTCCTACTTAGACAGTATGAGATGCTCTTCCCAAATCCTTTGGCAAGAATTGCGAGAAAATGCTGAAAGAAGTCTACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E697347" ref_strand="+" ref_description="SGN-E697347 [FA02BH12]">
      <seq>cggttacttgttacatatgaaggattaagatttgctgtgagtgatttgagattgctgatggatacattccatcgtgttgaatttacgggaacctggcggaggctattctcaagagtcaagaagcacatcatctggggagtcctaaaatctgtgacaggaatgcagggaaagaagtttaaagataaagcacatagtcataaggaaacttgtgctcctggcgttcctgatattgatcttaatctcagtgatagtgatggtggttcagctggaaaatccgagcaaaatcctttatcctggcctaagcgtcccgctgagggtgcaggtgatggttttgtcacctctataaaaggccttttcaattcacagcgtcggaaggccaaggctttcgtgcttcgaacaatgaggggtgaagcagaaaatgagattactggtgattggagtgaaagtgagggagatttctctccatttgctagacaactaaccataacaaaagccaagaagctgattagacggcatacaaagaagttccgttcaagagcaccaaaaggtttatcttctcaacaaagagaatcacttccttcgtcaccaagagagaccaccccatttgaaagtgattcatctagtgaatcttcgccttatgaggatttccacgagtagatgagcttgaagacattgaaacgacgtgtgttatgggatccaaaatggactggagcaatccttggtcatatataatagtccggtatgacagcaattccaattgattaggatttggtgacatccctgtctcctacttagacagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="13696" stop="15413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13994" g_stop="14540" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14541" i_stop="14857" i_length="317">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14858" g_stop="15113" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="803" r_length="256" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E697347" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13994" e_stop="14540"/>
          <exon e_start="14858" e_stop="15113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAGGTTGGTGAAGCTTTTTCGATGTTGAAATTATCCCGTTCTTTCTTTTGGAGTCCTATTATTTTCCTCTTGAGAAGACCTAATTCGGATGCCATTCTTCCCTCTCTCTGGAGCCAGCAGAATCCAGCATTAATAGTTTGTTCAAAACACACAATTTTATGATGTGTAGGTTGCTTAGTCACAGTTGATATTACAGTCCCTAGTTCGGGCTGACAGTGTGGTCCGTTACTTTTTAAACTACACTTTGAAGTATAATTTTTGAGTCCCAATCTGTATTTGGTATCTATTAAAAGATTGTTACTGACACAAGACCTTTCCAGGTTTATCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCGTTGGTCATATATAATAGTCCGGTACGATAGCAATTCCAATTGATTAGGATTTGGTGACATCCTTGTCTCCTACTTAGACAGTATG</genome_strand>
        <mrna_strand>CGGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAG.............................................................................................................................................................................................................................................................................................................................GTTTATCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCCTTGGTCATATATAATAGTCCGGTATGACAGCAATTCCAATTGATTAGGATTTGGTGACATCCCTGTCTCCTACTTAGACAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577692" ref_strand="-" ref_description="SGN-E577692 [LE15BH06]">
      <seq>aaaagccaagaagctgattagacggcatacaaagaagttccgttcaagagcaccaaaaggtttttcttctcaacaaagagaatcacttccttcgtcaccaagagagaccaccccatttgaaagtgattcatctagtgaatcttcgccttatgaggatttccacgagtagatgagcttgaagacattgaaacgacgtgtgttatgggatccaaaatggactggagcaatccttggtcatatataatagtccggtatgacagcaattccaattgattaggatttggtgacatccttgtctcctacttagacagtatgagatgctcttccaaaatcctttggcaagaattgcgagaaaatgctgaaagaagtctacaattaataacatttcattgccttcttagagctctggacttatcctggaaatcgagcaaaggtgagtccctgttgttgcagtcaattcttttcttctttatccttgtatttattgtattacccactacaaacaacattaggacttgtaaaagtccataagttttgtaactacatatctatctttagcgagagagaaaaggtttatagtttctactacatgtacagtagacacagagtagaattagaatgtgttccctgaaaaagaaaaatctggattgtaacagtgaggagataaaatggaaacggaagtcccaactcttcagtctcattatcaaagtaaagaaatagtgcattatttctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="14182" stop="15831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14482" g_stop="14540" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14541" i_stop="14857" i_length="317">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.612" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14858" g_stop="15519" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="721" r_length="662" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="754"/>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E577692" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577692" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14482" e_stop="14540"/>
          <exon e_start="14858" e_stop="15519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAGGTTGGTGAAGCTTTTTCGATGTTGAAATTATCCCGTTCTTTCTTTTGGAGTCCTATTATTTTCCTCTTGAGAAGACCTAATTCGGATGCCATTCTTCCCTCTCTCTGGAGCCAGCAGAATCCAGCATTAATAGTTTGTTCAAAACACACAATTTTATGATGTGTAGGTTGCTTAGTCACAGTTGATATTACAGTCCCTAGTTCGGGCTGACAGTGTGGTCCGTTACTTTTTAAACTACACTTTGAAGTATAATTTTTGAGTCCCAATCTGTATTTGGTATCTATTAAAAGATTGTTACTGACACAAGACCTTTCCAGGTTTATCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCGTTGGTCATATATAATAGTCCGGTACGATAGCAATTCCAATTGATTAGGATTTGGTGACATCCTTGTCTCCTACTTAGACAGTATGAGATGCTCTTCCAAAATCCTTTGGCAAGAATTGCGAGAAAATGCTGAAAGAAGTCTACAATTAATAACATTTCATTGCCTTCTTAGAGCTCTGGACTTATCCTGGAAATCGAGCAAAGGTGAGTCCCTGTTGTTGCAGTCAATTCTTTTCTTCTTTATCCTTGTATTTATTGTATTACCCACTACAAACAACATTAGGACTTGTAAAAGTCCATAAGTTTTGTAACTACATATCTATCTTTAGCGAGAGAGAAAAGGTTTATAGTTTCTACTACATGTACAGTAGACACAGAGTAGAATTAGAATGTGTTCCCTGAAAAAGAAAAATCTGGATTGTAACAGTGAGGAGATAAAATGGAAACGGAAGTCCCAACTCTTCAGTCTCATTATCAAAGTAAAGAAATAGT</genome_strand>
        <mrna_strand>AAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAG.............................................................................................................................................................................................................................................................................................................................GTTTTTCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCCTTGGTCATATATAATAGTCCGGTATGACAGCAATTCCAATTGATTAGGATTTGGTGACATCCTTGTCTCCTACTTAGACAGTATGAGATGCTCTTCCAAAATCCTTTGGCAAGAATTGCGAGAAAATGCTGAAAGAAGTCTACAATTAATAACATTTCATTGCCTTCTTAGAGCTCTGGACTTATCCTGGAAATCGAGCAAAGGTGAGTCCCTGTTGTTGCAGTCAATTCTTTTCTTCTTTATCCTTGTATTTATTGTATTACCCACTACAAACAACATTAGGACTTGTAAAAGTCCATAAGTTTTGTAACTACATATCTATCTTTAGCGAGAGAGAAAAGGTTTATAGTTTCTACTACATGTACAGTAGACACAGAGTAGAATTAGAATGTGTTCCCTGAAAAAGAAAAATCTGGATTGTAACAGTGAGGAGATAAAATGGAAACGGAAGTCCCAACTCTTCAGTCTCATTATCAAAGTAAAGAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261712" ref_strand="+" ref_description="SGN-E261712 [cLEG-61-H3]">
      <seq>tggtttgtgtatatatgtgctgtatatattgtaacagcttgcttaatactaataaggtgtgtttgcgtttccagcttctctgtggatgagcatgattttgacccaggttttttataccattattacgccccatacaaaatggattttacttatctgtgtaaacatagaaaatgactaaccaaatacttacaattaatgctgaattttgtacaaatatcaattaactagacaccttttttaagctaaaagacctaaagggattactcaatagttttatatgccaaaagtggttgtcagaggtaggatgtgtgaccgtcaatttttctctgatggacttcagcggttgtttgctcatttttttcttcacggaatttgcagttgctattaggaatttattttctttaatttaagaaatagtttagtaacagtttgcagcaaatgattaacagagagacttgaactaaaatggaaactcatggagggacgttggacgtatgcaagtagaacacgcacttatactcccctttttataaataataaatattggataaaacttatccttatcaggtgttcacaacaatccaatacatgtatgtcatgtgtttaatttgatagtttattttatttaaccttaattaattaacatgtggtaactttagaaaagaaaaaatattttatagtagagtatagtgctatcttctaattgtagagtatcatttctcccgacacttttttcaaaaataagaaaaaattacataaatcaatatatttcaaaaaataattactgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="18127" stop="16736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17827" g_stop="17036" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E261712" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17827" e_stop="17036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGTGTATATATGTGCTGTATATATTGTAACAGCTTGCTTAATACTAATAAGGTGTGTTTGCGTTTCCAGCTTCTCTGTGGACGAGCATGATTTTGACCCAGGTTTTTTATACCATTATTACGCCCCATACAAAATGGATTTTACTTATCTGTGTAAACATAGAAAATGACTAACCAAATACTTACAATTAATGCTGAATTTTGTACAAATATCAATTAACTAGACACCTTTTTTAAGCTAAAAGACCTAAAGGGATTACTCAATAGTTTTATATGCCAAAAGTGGTTGTCAGAGGTAGGATGTGTGACCGTCAATTTTTCTCTGATGGACTTCAGCGGTTGTTTGCTCATTTTTTTCTTCACGGAATTTGCAGTTGCTATTAGGAATTTATTTTCTTTAATTTAAGAAATAGTTTAGTAACAGTTTGCAACAAATGATTAACAGAGAGACTTGAACTAAAATGGAAACTCATGGAGGGACGTTGGACGTATGCAAGTAGAACACGCACTTATACTCCCCTTTTTATAAATAATAAATATTGGATAAAACTTATCCTTATCAGGTGTTCACGACAATCCAATATATGTATGTCATGTGTTTAATTTGATAGTTTATTTTATTTAACCTTAATTAATTAACATGTGGTAACTTTAGAAAAGAATAAAATATTTTATAGTAGAGTATAGTGCTATCTTCTAATTGTAGAGTATCATTTCTCCCGACACTTTTTTCAAAAATAAGAAAAAATTACATAAATCAATATATTTCAAAAAATAATTACTGATTT</genome_strand>
        <mrna_strand>TGGTTTGTGTATATATGTGCTGTATATATTGTAACAGCTTGCTTAATACTAATAAGGTGTGTTTGCGTTTCCAGCTTCTCTGTGGATGAGCATGATTTTGACCCAGGTTTTTTATACCATTATTACGCCCCATACAAAATGGATTTTACTTATCTGTGTAAACATAGAAAATGACTAACCAAATACTTACAATTAATGCTGAATTTTGTACAAATATCAATTAACTAGACACCTTTTTTAAGCTAAAAGACCTAAAGGGATTACTCAATAGTTTTATATGCCAAAAGTGGTTGTCAGAGGTAGGATGTGTGACCGTCAATTTTTCTCTGATGGACTTCAGCGGTTGTTTGCTCATTTTTTTCTTCACGGAATTTGCAGTTGCTATTAGGAATTTATTTTCTTTAATTTAAGAAATAGTTTAGTAACAGTTTGCAGCAAATGATTAACAGAGAGACTTGAACTAAAATGGAAACTCATGGAGGGACGTTGGACGTATGCAAGTAGAACACGCACTTATACTCCCCTTTTTATAAATAATAAATATTGGATAAAACTTATCCTTATCAGGTGTTCACAACAATCCAATACATGTATGTCATGTGTTTAATTTGATAGTTTATTTTATTTAACCTTAATTAATTAACATGTGGTAACTTTAGAAAAGAA-AAAATATTTTATAGTAGAGTATAGTGCTATCTTCTAATTGTAGAGTATCATTTCTCCCGACACTTTTTTCAAAAATAAGAAAAAATTACATAAATCAATATATTTCAAAAAATAATTACTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217035" ref_strand="+" ref_description="SGN-E217035 [cLEL-1-L11](-)">
      <seq>gactagttgactgcctgtaaattgttgttgtaacattacccacttgaagttaacatttcctttctggagagacgctactatttcaaactgaccctgttaaatttgggatggttgctgttgatgtgtgaaatttgatgcctgtagatgagtaagtaaatattattggtgcctaaccaatccatacaaagtgattaactgtgtcctgttcattgcaagctagttggtggtttgtgtatatatgtgctgtatatattgtaacagcttgcccaatactaataaggtgtgtttgcgtttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="18349" stop="17455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18124" g_stop="18120" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18119" i_stop="18046" i_length="74">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.816" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18045" g_stop="17755" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="297" r_length="292" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="314"/>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E217035" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18124" e_stop="18120"/>
          <exon e_start="18045" e_stop="17755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAGTAAGTTTTGATTCTTAAAGACCCCATTAGCTGAACAGTGTCTCTGGTTTGCTAACATTTTAAACCATGCACAGGTTGACTGCCTGTAAATTGTTGTTGTAACA-TACCCACTTGAAGTTAACATTTCCTTTCTGGAGAGACGCTACTATTTCAAACTGACCCTGTTAAATTTGGGATGGTTGCTGTTGATGTGTGAAATTTGATGCCTGTAGATGAGTAAGTAAATATTATTGGTGCCTAACCAATCCATACAAAGTGATTAACTGTGTCCTGTTCATTGCAAGCTAGTTGGTGGTTTGTGTATATATGTGCTGTATATATTGTAACAGCTTGCTTAATACTAATAAGGTGTGTTTGCGTTTCCA</genome_strand>
        <mrna_strand>GACTA..........................................................................GTTGACTGCCTGTAAATTGTTGTTGTAACATTACCCACTTGAAGTTAACATTTCCTTTCTGGAGAGACGCTACTATTTCAAACTGACCCTGTTAAATTTGGGATGGTTGCTGTTGATGTGTGAAATTTGATGCCTGTAGATGAGTAAGTAAATATTATTGGTGCCTAACCAATCCATACAAAGTGATTAACTGTGTCCTGTTCATTGCAAGCTAGTTGGTGGTTTGTGTATATATGTGCTGTATATATTGTAACAGCTTGCCCAATACTAATAAGGTGTGTTTGCGTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E701711" ref_strand="+" ref_description="SGN-E701711 [FA16CH10]">
      <seq>ggaggatgtaagcatgaaggtattgaatcaccatcaatatggaggacagagccaacagttgtgcggaggtggagttgtggaagtttctagaacaagcgagcttactcttgcttttgaaggtgaagtctatgtttttcctgcagtcactcctgataaggtgcaagcagtgctcttactattggagggatgtgacattcctactgctgtgcccactgttgaacttccattcgacaacaaggttgaggatttgccaaagcaagctgatctttcgaaaagatttgcctccttggttaggttccgagagaagcgaaaggagagatgttttgacaagaaaattagatacagcgtcaggaaagaggttgctcaaaggatgcataggaaaaatggtcaatttgcatctttgaaatcaaattctggatcttctagctgcgattcagccaagagtagccttgagggagatggcacgcaacattctgtaattgttcctggaaagtgtcaccattgtggtgtgagtgaaaattgtacgccagcgatgcgtcgtgggccagatggaccaaggacactctgcaatgcatgtggacttaagtgggcaaacaagggaacattgagagatctaagcaaggctgggaggaaaatttctgttgaaccaaacgaactgggaactcctaacaatcccgtgaaggcatttgctgaaggatcccttgatcattgtgctgatgtggaaaagaatctattcagctctggtagcaatcttgcaaatgatattcctgtgggtatcattagttcttcaaacaatcttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="22708" stop="18014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22408" g_stop="22252" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22251" i_stop="20687" i_length="1565">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20686" g_stop="20606" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="238" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20605" i_stop="20533" i_length="73">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20532" g_stop="20402" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="369" r_length="131" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20401" i_stop="19928" i_length="474">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.391" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19927" g_stop="19814" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="483" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19813" i_stop="19696" i_length="118">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.698" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19695" g_stop="19581" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="598" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19580" i_stop="19236" i_length="345">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19235" g_stop="19176" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="658" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19175" i_stop="18861" i_length="315">
            <donor d_prob="0.749" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18860" g_stop="18792" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="727" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18791" i_stop="18390" i_length="402">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18389" g_stop="18314" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="803" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E701711" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22408" e_stop="22252"/>
          <exon e_start="20686" e_stop="20606"/>
          <exon e_start="20532" e_stop="20402"/>
          <exon e_start="19927" e_stop="19814"/>
          <exon e_start="19695" e_stop="19581"/>
          <exon e_start="19235" e_stop="19176"/>
          <exon e_start="18860" e_stop="18792"/>
          <exon e_start="18389" e_stop="18314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGATGTAAGCATGAAGGTATTGAATCACCATCAATATGGAGGACAGAGCCAACAGTTGTGCGGAGGTGGAGTTGTGGAAGTTTCTAGAACAAGTGAGCTTACTCTTGCTTTTGAAGGTGAAGTCTATGTTTTTCCTGCAGTCACTCCTGATAAGGTAGTTTCTATTTTTAGATAGATATTTAGTTGCGCTTTTTCTTTTCTTCCTGTTTTTGGAACTTCCTATCGAATCATAGATTGGGTGCTTTACCTATTTTATTGTGTTTTTAGTTTAAATACAATGTTCCTATTGATTGTTGTTTAAATGTTATTGTATCTTAATGTTAAATCATCGCAACGAAAAATTTCATATCATTTCAGGTAACAACCGATTTAGTGTACTCTACCCTTTATAATAGCTCTACCTGTACCAATTTTTCTTGTAAATTTGTACTTTAAATTGTTGATGTGTTGTGACATTACAATGGAAAATGATACAATTTATTCAAACTTCGTATTCATCAAAGTAATACAGTTCAATACTATACGATACACTGTGAAGTAATATGTAACAACTATCTAAACGAAGTGTTTTGCGTCATCCTTTTTTGTAAATACAATACATTGTTGTGTGCAAATGTAGTGAATTTTGAGTATACTCTTAGCTATTGACATGATGGTAACTCTACATATTTTTTCCTCAGCGAATTTTGTCATTGTTGTAGTACTGCTATTTATTGATTAGTTGAAGTATCGTACATTGTTCAAACAGGATTAAAGAATGATTTGGGAAAATTTTTAATATGTATGTCTTATCTTTTATTTACGGATCAAGTTAGTACCTAAATTAAACCACCAAACAGCCTACTACAGCACATGAGTACAACTTTTACTCAAGTGTTGTAGCTGGGAGTCAAACCTTGGATCTTGCATGCCTCAACATCAGCCACCCTCTCCAGGAGAACATATTTTGTCTTTAATTCTCTACCTTAAAATTATACATATTTTTCTTGCATATCACGGGCTTCTTGATGAGGCATATGAGTAAATTGTTACTTGGTCGTTTATTGCTCTTCCAGTTCTGATTTTTTGTTCGATCCATCTCTTAAAAGCGGCCTATTAGTGAAAAAAGTTCATTTCCATCATAATTCTAATGGAATTTGTGATTCTTGGAAGCTCCCATCCTCCTTTAGTCCGTTGCCCCTTGCCAGTCCAACGAAGGAATGGAAGAATTTATAGAAATGGTGTCTGGCTAACTGTACACTCTACATCCTAGAATTAATTTGGACATAGTAACTTGGCTGAGAATTTCCTTCTCTGTGCCCGTTTACTAGATATTAGTTTACTCCAAAAATAAATAAATCTTGAGAATATAGTTGGGAATTTTATGTGTCATTGCACCTTCTTTCTTTGTATATAAAGTTAGAAACAGCTGCTTTCCTGTGATACACCTCTAGACAGCTTCTCAGATCCCGTAGAAAGAATCAGAAATAGCTGAGAAATATTGGGGTTTCATTTTTATAATGGTGCTTCTCACCCAGAGACATGTTTAATTAAATATGATGCTGTCTCCATCTTACATGGTATGGTGTTTTTGCTTGTGTTTTCTATGTCATATGAATCATGGTTCTTTTTTTGTATTTGGACAGAGTTGTTACTGTTGTTTGTCAATTATGTGTTGTTATTGCATAATGACTGGCAAAGGTCTGGAAATTGACTCTGGCTTACTTTTGGTAAAAACAGGTGCAAGCAGTGCTCTTACTATTGGAGGGATGTGACATTCCTACTGCTGTGCCCACTGTTGAACTTCCATTCGACAACAAGGTATTCTATATAAATTCTACAACTTGCACTACATAGTTTGATGACACTCTTGGATGACCAGTATTATTTTTAGGTTGAGGATTTGCCAAAGCAAGCTAATCTTTCGAAAAGATTTGCCTCCTTGGTTAGGTTCCGAGAGAAGCGAAAGGAGAGATGTTTTGACAAGAAAATTAGATACAGTGTCAGGAAAGAGGTTGCTCAAAGGTAAAATGATATGTCTTCTTTCCATTTTTTTTGGTTTTCTTAGAGACTTTAGCTGGTAATGATATTTGATAATGTCAAATTGTCCCTTACAAACAAATGAGTAAAAGATGACATTGGTAATAGAAATTGCTATTAGCGTGCTTTCTTTGATATTCATTCAACAAACCCTTTCATATTCAAGTGTTAGTACCATGGTATCAATGTCATTTTCTGGCAAATATAACATGATATTACTTCTTTGATGGAATTCACCTAATAATGTACTTGCAATATCATCAGTCCTTACATTTGTAATATCAGGTAATAAGGACTGAAAATATAACTTCTTTTTTTCTCACCCCCACCCACCCAAAAAAAAATGAAATAGGATTCTGGAAAAATATGCAACTAATTTTCTAAATTTAATTAGAAACATTTTCTGATACAGATATCGAGGTTTTGAGTAATGAACTTACTTGACCACGTGTATATTAGGATGCATAGGAAAAATGGTCAATTTGCATCTTTGAAATCAAGTTCTGGATCTTCTAGCTGCGATTCAGCCAAGAGTAGCCTTGAAGGAGATGGCACACAACATTCTCTAACTATGTGAGTTAACATTTTTTCTCATTTTTAGTGCTTCAGCCTCTAGTGACTGCAACTACTTCTTCCATAACAGCTAAAGACCAATGTTTTTTCCTGCTTGATTTCTTTTTTGGATTATTAGTCCTGGAAAGTGTCACCATTGTGGTGTGAGTGAAAATTGTACGCCAGCGATGCGTCGTGGGCCAGATGGACCAAGGACACTCTGCAATGCATGTGGACTTAAGTGGGCAAACAAGGTACGCAAGACATCCTTCTCTTTTTCTGTGTTTTAATTGTCAAGAAGTTTTTCACGTGACAGAATTCCTGCTTTCTGTTCATCTTTCTCCCACCCCCACCTCTTCTTGATACTCCACTTGATGGGTTATCCTCTCATTTCTTTTGGGAGAGAGAGGTTTCAATAAACTTGCAATCACCTTTGTTCTGGGTCTGCTCTCTAAAATTGCACCAATTTCCAAAATAGATTTTGCTTTGCCAAATCATGTCACCTGATCTGTTCATTCTATTTCTTTTAACCAATATTTGTGCATTCTATTGGACTTATCTTTCAAGTTCTTAATGGCTCCGTATTGTTGGATGAATAGGGAACATTGAGAGATCTAAGCAAGGCAGGGAGGACAATTTCTGTTGAACTAAACGAACTGGTATGTTTCATCAGCAAGAATGAGAAATCTGTTAGTGGTCTGAAGAACTTAATCCTCTTTGCTTTATATATAGTATCCTGTTATTTCTCTGTATACATGCTATTTCTCCTTAACCAAAAAGGACCTGAAAATTTTCAACTTATCCATTCATCTTAGTGTTCTTGATATATGAGAAGATCAAAATTTTGCATTGTCCAATTTTGAAGGTGGAATCTTCTCTATTGCCAGGATGGACATATATGGAGGCACTTTATTACAAAATACTCCAAAAAATATGAGCTTAATCATCTCTCAGGCATCTTATGTTACATGCAGGGAACTCCTAACAATCCCGTGAAGGCATTTGCTGAAGGATCCCTTGATCATTGTGCTGATGTGGAAAAGGTATGCTTTGGTTTTGTGACGCTGTGTATCAATAATCAAAAATATTTCCTCGTATGTTATATTGTAGCACACTTTTCAATAGTAAGATCGAAATGCTTCCTCATAAGGTTATATTGTAGTACACATTAAAATCTAATCGAAATAACACAAAACTATAATGATTAAAAAACAGCGTGAACGAGAAAGAATGGACTCACTTTATGAGGTGCAGGCCCAAGAACTTAACAAGTTTATTTAGTTATAATTCTGTTGAACCAAGTGCAATAAAAACTGGACACTGTAGCAGTGTTATTTTCAGTCTTCTGTTTTTTTTTTTTTTTGAAGACGATAACATTTTCTTGTGTATATAGAAACTTCACGATATAACATTTACTTTATGGAAACTTTACTGTTTTGGTTCAGAATCTATTCAGCTCTGGTAGCAATCTTGCAAATGATATTCCTGCGGGTATCATTAGTTCTTCGAACAATCTTGTTG</genome_strand>
        <mrna_strand>GGAGGATGTAAGCATGAAGGTATTGAATCACCATCAATATGGAGGACAGAGCCAACAGTTGTGCGGAGGTGGAGTTGTGGAAGTTTCTAGAACAAGCGAGCTTACTCTTGCTTTTGAAGGTGAAGTCTATGTTTTTCCTGCAGTCACTCCTGATAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCAGTGCTCTTACTATTGGAGGGATGTGACATTCCTACTGCTGTGCCCACTGTTGAACTTCCATTCGACAACAAG.........................................................................GTTGAGGATTTGCCAAAGCAAGCTGATCTTTCGAAAAGATTTGCCTCCTTGGTTAGGTTCCGAGAGAAGCGAAAGGAGAGATGTTTTGACAAGAAAATTAGATACAGCGTCAGGAAAGAGGTTGCTCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGAAAAATGGTCAATTTGCATCTTTGAAATCAAATTCTGGATCTTCTAGCTGCGATTCAGCCAAGAGTAGCCTTGAGGGAGATGGCACGCAACATTCTGTAATTGT......................................................................................................................TCCTGGAAAGTGTCACCATTGTGGTGTGAGTGAAAATTGTACGCCAGCGATGCGTCGTGGGCCAGATGGACCAAGGACACTCTGCAATGCATGTGGACTTAAGTGGGCAAACAAG.........................................................................................................................................................................................................................................................................................................................................................GGAACATTGAGAGATCTAAGCAAGGCTGGGAGGAAAATTTCTGTTGAACCAAACGAACTG...........................................................................................................................................................................................................................................................................................................................GGAACTCCTAACAATCCCGTGAAGGCATTTGCTGAAGGATCCCTTGATCATTGTGCTGATGTGGAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................AATCTATTCAGCTCTGGTAGCAATCTTGCAAATGATATTCCTGTGGGTATCATTAGTTCTTCAAACAATCTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E735551" ref_strand="+" ref_description="SGN-E735551 [LC02AD11]">
      <seq>cggatcaaacaaaactctctgtatctaaatttgatcatgaaattctaaggagaaattcatcgcaattcaacttaggagttcatattttgctttaaaaacgaagaaatttggatatttttttgattgtgtaaagtgatttttgttgtgaaatttagcgtgattttgaaggattaggttaacgatttcatggtgtttatatagtagataagagtatcatgatggcggagaatccacggccattgcaggcgcgtccgtttgaggatcacgcgccgctgcagtctctacggatggtggaggaggaagaagaggaggaggaggagggcgatgaagatagcgcatacgaggatgatggaggggaagagactatggatgaggcggaggatgtaagcatgaaggtattgaatcaccatcaatatggaggacagagccaacagttgtgcggaggtggagttgtggaagtttctagaacaagtgagcttactcttgcttttgaaggtgaagtctatgtttttcctgcagtcactcctgataaggtgcaagcagtgctcttactattggagggatgtgacattcctactgctgtgcccactgttgaacttccattcgacaacaaggttgaggatttgccaaagcaagctaatctttcgaaaagatttgcctccttggttaagttccgagagaagcgaaaggagagatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="23082" stop="20146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22784" g_stop="22252" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22251" i_stop="20687" i_length="1565">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20686" g_stop="20606" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="614" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20605" i_stop="20533" i_length="73">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20532" g_stop="20446" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="701" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E735551" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22784" e_stop="22252"/>
          <exon e_start="20686" e_stop="20606"/>
          <exon e_start="20532" e_stop="20446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCAAACAAAACTCTCTGTATCTAAATTTGATCATGAAATTCGAAGGAGAAATTCATCGCAATTCAACTTAGGAGTTCATATTTTGCTAAAAAAACGAAGAAATTTGGATATTTTTTTGATTGTGTAAAGTGATTTTTGTTGTGAAATTTAGCGTGATTTTGAAGGATTAGGTTAACGATTTCATGGTGTTTATATAGTAGATAAGAGTATCATGATGGCGGAGAATCCACGGCCATTGCAGGCGCGTCCGTTTGAGGATCACGCGCCGCTGCAGTCTCTACGGATGGTGGAGGAGGAAGAAGAGGAGGAGGAGGAGGGCGATGAAGATGGCGCATACGAGGATGATGGAGGGGAAGAGACTATGGATGAGGCGGAGGATGTAAGCATGAAGGTATTGAATCACCATCAATATGGAGGACAGAGCCAACAGTTGTGCGGAGGTGGAGTTGTGGAAGTTTCTAGAACAAGTGAGCTTACTCTTGCTTTTGAAGGTGAAGTCTATGTTTTTCCTGCAGTCACTCCTGATAAGGTAGTTTCTATTTTTAGATAGATATTTAGTTGCGCTTTTTCTTTTCTTCCTGTTTTTGGAACTTCCTATCGAATCATAGATTGGGTGCTTTACCTATTTTATTGTGTTTTTAGTTTAAATACAATGTTCCTATTGATTGTTGTTTAAATGTTATTGTATCTTAATGTTAAATCATCGCAACGAAAAATTTCATATCATTTCAGGTAACAACCGATTTAGTGTACTCTACCCTTTATAATAGCTCTACCTGTACCAATTTTTCTTGTAAATTTGTACTTTAAATTGTTGATGTGTTGTGACATTACAATGGAAAATGATACAATTTATTCAAACTTCGTATTCATCAAAGTAATACAGTTCAATACTATACGATACACTGTGAAGTAATATGTAACAACTATCTAAACGAAGTGTTTTGCGTCATCCTTTTTTGTAAATACAATACATTGTTGTGTGCAAATGTAGTGAATTTTGAGTATACTCTTAGCTATTGACATGATGGTAACTCTACATATTTTTTCCTCAGCGAATTTTGTCATTGTTGTAGTACTGCTATTTATTGATTAGTTGAAGTATCGTACATTGTTCAAACAGGATTAAAGAATGATTTGGGAAAATTTTTAATATGTATGTCTTATCTTTTATTTACGGATCAAGTTAGTACCTAAATTAAACCACCAAACAGCCTACTACAGCACATGAGTACAACTTTTACTCAAGTGTTGTAGCTGGGAGTCAAACCTTGGATCTTGCATGCCTCAACATCAGCCACCCTCTCCAGGAGAACATATTTTGTCTTTAATTCTCTACCTTAAAATTATACATATTTTTCTTGCATATCACGGGCTTCTTGATGAGGCATATGAGTAAATTGTTACTTGGTCGTTTATTGCTCTTCCAGTTCTGATTTTTTGTTCGATCCATCTCTTAAAAGCGGCCTATTAGTGAAAAAAGTTCATTTCCATCATAATTCTAATGGAATTTGTGATTCTTGGAAGCTCCCATCCTCCTTTAGTCCGTTGCCCCTTGCCAGTCCAACGAAGGAATGGAAGAATTTATAGAAATGGTGTCTGGCTAACTGTACACTCTACATCCTAGAATTAATTTGGACATAGTAACTTGGCTGAGAATTTCCTTCTCTGTGCCCGTTTACTAGATATTAGTTTACTCCAAAAATAAATAAATCTTGAGAATATAGTTGGGAATTTTATGTGTCATTGCACCTTCTTTCTTTGTATATAAAGTTAGAAACAGCTGCTTTCCTGTGATACACCTCTAGACAGCTTCTCAGATCCCGTAGAAAGAATCAGAAATAGCTGAGAAATATTGGGGTTTCATTTTTATAATGGTGCTTCTCACCCAGAGACATGTTTAATTAAATATGATGCTGTCTCCATCTTACATGGTATGGTGTTTTTGCTTGTGTTTTCTATGTCATATGAATCATGGTTCTTTTTTTGTATTTGGACAGAGTTGTTACTGTTGTTTGTCAATTATGTGTTGTTATTGCATAATGACTGGCAAAGGTCTGGAAATTGACTCTGGCTTACTTTTGGTAAAAACAGGTGCAAGCAGTGCTCTTACTATTGGAGGGATGTGACATTCCTACTGCTGTGCCCACTGTTGAACTTCCATTCGACAACAAGGTATTCTATATAAATTCTACAACTTGCACTACATAGTTTGATGACACTCTTGGATGACCAGTATTATTTTTAGGTTGAGGATTTGCCAAAGCAAGCTAATCTTTCGAAAAGATTTGCCTCCTTGGTTAGGTTCCGAGAGAAGCGAAAGGAGAGATGTTTT</genome_strand>
        <mrna_strand>CGGATCAAACAAAACTCTCTGTATCTAAATTTGATCATGAAATTCTAAGGAGAAATTCATCGCAATTCAACTTAGGAGTTCATATTTTGCTTTAAAAACGAAGAAATTTGGATATTTTTTTGATTGTGTAAAGTGATTTTTGTTGTGAAATTTAGCGTGATTTTGAAGGATTAGGTTAACGATTTCATGGTGTTTATATAGTAGATAAGAGTATCATGATGGCGGAGAATCCACGGCCATTGCAGGCGCGTCCGTTTGAGGATCACGCGCCGCTGCAGTCTCTACGGATGGTGGAGGAGGAAGAAGAGGAGGAGGAGGAGGGCGATGAAGATAGCGCATACGAGGATGATGGAGGGGAAGAGACTATGGATGAGGCGGAGGATGTAAGCATGAAGGTATTGAATCACCATCAATATGGAGGACAGAGCCAACAGTTGTGCGGAGGTGGAGTTGTGGAAGTTTCTAGAACAAGTGAGCTTACTCTTGCTTTTGAAGGTGAAGTCTATGTTTTTCCTGCAGTCACTCCTGATAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCAAGCAGTGCTCTTACTATTGGAGGGATGTGACATTCCTACTGCTGTGCCCACTGTTGAACTTCCATTCGACAACAAG.........................................................................GTTGAGGATTTGCCAAAGCAAGCTAATCTTTCGAAAAGATTTGCCTCCTTGGTTAAGTTCCGAGAGAAGCGAAAGGAGAGATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E334632" ref_strand="+" ref_description="SGN-E334632 [cTOD-23-M8]">
      <seq>aactagtctcgagttttttttcgatccatctcttaaaagcggcctattagtgaaaaaagttcatttccatcataattctaatggaatttgtgattcttggaagctcccatcctcctttagtccgttgccccttgccagtccaacgaaggaatggaagaatttatagaaatggtgtctggctaactgtacactctacatcctagaattaatttggacatagtaacttggctgagaatttccttctctgtgcccgtttactagatattagtttactccaaaaataaataaatcttgagaatatagttgggaattttatgtgtcattgcaccttctttctttgtatataaagttagaaacagctgctttcctgtgatacacctctagacagcttctcagatcccgtagaaagaatcagaaatagctgagaaatattggggtttcatttttataatggtgcttctcatccagagacatgtttaattaaatatgatgctgtctccatcttacatggtatggnttttttgcttgtgttttctatgtcatatgaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="21654" stop="20504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21350" g_stop="20804" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="553" r_length="546" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E334632" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21350" e_stop="20804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGATTTTTTGTTCGATCCATCTCTTAAAAGCGGCCTATTAGTGAAAAAAGTTCATTTCCATCATAATTCTAATGGAATTTGTGATTCTTGGAAGCTCCCATCCTCCTTTAGTCCGTTGCCCCTTGCCAGTCCAACGAAGGAATGGAAGAATTTATAGAAATGGTGTCTGGCTAACTGTACACTCTACATCCTAGAATTAATTTGGACATAGTAACTTGGCTGAGAATTTCCTTCTCTGTGCCCGTTTACTAGATATTAGTTTACTCCAAAAATAAATAAATCTTGAGAATATAGTTGGGAATTTTATGTGTCATTGCACCTTCTTTCTTTGTATATAAAGTTAGAAACAGCTGCTTTCCTGTGATACACCTCTAGACAGCTTCTCAGATCCCGTAGAAAGAATCAGAAATAGCTGAGAAATATTGGGGTTTCATTTTTATAATGGTGCTTCTCACCCAGAGACATGTTTAATTAAATATGATGCTGTCTCCATCTTACATGGTATGGTGTTTTTGCTTGTGTTTTCTATGTCATATGAATCATG</genome_strand>
        <mrna_strand>CTC-GAGTTTTTTTTCGATCCATCTCTTAAAAGCGGCCTATTAGTGAAAAAAGTTCATTTCCATCATAATTCTAATGGAATTTGTGATTCTTGGAAGCTCCCATCCTCCTTTAGTCCGTTGCCCCTTGCCAGTCCAACGAAGGAATGGAAGAATTTATAGAAATGGTGTCTGGCTAACTGTACACTCTACATCCTAGAATTAATTTGGACATAGTAACTTGGCTGAGAATTTCCTTCTCTGTGCCCGTTTACTAGATATTAGTTTACTCCAAAAATAAATAAATCTTGAGAATATAGTTGGGAATTTTATGTGTCATTGCACCTTCTTTCTTTGTATATAAAGTTAGAAACAGCTGCTTTCCTGTGATACACCTCTAGACAGCTTCTCAGATCCCGTAGAAAGAATCAGAAATAGCTGAGAAATATTGGGGTTTCATTTTTATAATGGTGCTTCTCATCCAGAGACATGTTTAATTAAATATGATGCTGTCTCCATCTTACATGGTATGGNTTTTTTGCTTGTGTTTTCTATGTCATATGAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E253050" ref_strand="+" ref_description="SGN-E253050 [cLEG-25-K1]">
      <seq>aaaaaaataataatcatgagaacccgaccacctttccccataccctaatttaatcaagtagcaaccttatgcttccaaatctaatccaagattttctccatagtcctataatatattatccacctaaaatataatctgaaattttctaccggattcttattcgaagtttagaatcatattagagctttaattaaatttaaatttgtgccaaaaatatgcaattaatagaattttctccatattaccaatccatattaattttagaagtaccaatggcagaagctgtaaatttaaccattttcaaggtgtgtttttattaaaaggacttttgtctccttcacactttcctcgtcatccttgttatcaccattctccgtctctcttaaagatcaaacaaaactctctgtatctaaatttgatcatgaaattcgaaggagaaattcatcgcaattcaacttaggagttcatattttgctttaaaaacgaagaaatttggatatttttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="23461" stop="22362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23161" g_stop="22662" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E253050" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23161" e_stop="22662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATAATAATCATGAG-ACCCGACCA-CTTT-CCCATA-CCTAATTTAATCAAGTAGCAA-CTTATGTTTCCAAATCTAATCCAAGATTTTCTCCACATATACTATAATATATTATCCA-CTAAAATATAATCTGAAATTTTCTA-CGGAATCTTATTCGAAGTTTAGAATCATATTAGAGCTTTAATTAAATTTAGGTTTGTG-CAAAAATATGCAATTAATAGAATTTTCTCCATATTA-CAATCCATATTAATTTTAGAAGTACCAATGGCAGAAGCTGTAAATTTAACCATTTTCAAGGTGTGTTTTTATTAAAAGGACTTTTGTCTCCTTCACACTTTCCTCGTCATCCTTGTTATCACCATTCTCCGTCTCTCTTAAAGATCAAACAAAACTCTCTGTATCTAAATTTGATCATGAAATTCGAAGGAGAAATTCATCGCAATTCAACTTAGGAGTTCATATTTTGCTAAAAAAACGAAGAAATTTGGATATTTTTTTGA</genome_strand>
        <mrna_strand>AAAAAAATAATAATCATGAGAACCCGACCACCTTTCCCCATACCCTAATTTAATCAAGTAGCAACCTTATGCTTCCAAATCTAATCCAAGATTTTCTCCATA-GTCCTATAATATATTATCCACCTAAAATATAATCTGAAATTTTCTACCGGATTCTTATTCGAAGTTTAGAATCATATTAGAGCTTTAATTAAATTTAAATTTGTGCCAAAAATATGCAATTAATAGAATTTTCTCCATATTACCAATCCATATTAATTTTAGAAGTACCAATGGCAGAAGCTGTAAATTTAACCATTTTCAAGGTGTGTTTTTATTAAAAGGACTTTTGTCTCCTTCACACTTTCCTCGTCATCCTTGTTATCACCATTCTCCGTCTCTCTTAAAGATCAAACAAAACTCTCTGTATCTAAATTTGATCATGAAATTCGAAGGAGAAATTCATCGCAATTCAACTTAGGAGTTCATATTTTGCTTTAAAAACGAAGAAATTTGGATATTTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722642" ref_strand="+" ref_description="SGN-E722642 [FC17DE08]">
      <seq>atgacttatgactcttaccaagtccaacatttacatcaatctgtagcaattttgcattaggaaagttgatttcattttttcagtgggtggaattctgtgggaaccagatgacaaagtcattctgtagttcttttttgatgaatttgggaggttacagcaaaatcttgaatcccaattgagatgtgcggaagtggtacaactactactactatgtcaccagacgtttgtggatctatcttgcttctatcactgcctgatgacgtgtttgctatagtaagtagatcactttctccaagggatgtatgtaatcttggtttatgctgtagaaacttgcatgatttagctgcctctgagaaggtttggctatcacaatgtgaaatgcttggggtggttccttatcgggatgttattgaatggcgaaagggagtttgttcctacaaggcactttgtcacttctttgtaagcataacgcctttgcttggtatttgggttcatcaaaatcctgaactcggcaaggttgtttatgttatgcctggttttatctctgcggttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="36430" stop="38174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36730" g_stop="36843" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36844" i_stop="37433" i_length="590">
            <donor d_prob="0.786" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37434" g_stop="37874" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="556" r_length="441" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E722642" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36730" e_stop="36843"/>
          <exon e_start="37434" e_stop="37874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACTTATGACTCTTACCAAGTCCAACATTTACATCAATCTGTAGCAATTTTGCATTAAGAAAGTTGATTTCATT-TTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAAGTATGGTTTTTTTTGCTGTTTTTCTGTATGGGCTGTTAGATCTTACTTTGCTTTATAACCCCTTTGTTGTGCTTTTTCTCAATTTCTGTATATCTTTAAGTTGATCAAGTTTTTGCTGCAAAATCTTGAATCTCAATTTAAGAAAGTTAGGGTTTTTTTCTCTCTTGAGTAATTGAGTTTTGATGCCTGATCATTCTGTAGTTTTTAAAAAAAAATGAATTTCGGAAGTTATGGCAAATTCTTGTATCCCAATTTAAGAAAGTAGGTTTCTATGTGAATGATTACCCCTCTTGAGTAATTGAGCTTTGATGGGCTGTTTGGCAAATCATTTTGTGCTTTTTTTTTTTTTAATGAATTTGGGAAGTTAAAGCAAAATCTTGAATCCCAATTTAAGAAAGTAGGGTTCTTTGTGAATGAATACCCCTCTTGAGTAATTGAGTTTTTGATGGCTGTTTGGCAGATCATTCTGTAGTTTTTTATAATGAAACTGGGAAGTTATTGCAAACTCTTGAATCCCAATTTAAGAAAGTAGGTTCTTTGTGAATGATTATTCCTCTTGAGTAATTGAGTTTTGATGGGCTGTTTTGCAGGTCATTCTGTAGTTCTTTTTTGATGAAATTAGGAGGTTACAGCAAAATCTTGAATCCCAATTGAGATGTGCGGAAGTGGTACAACTACTACTACTATGTCACCAGACGTTTGTGGATCTAGCTTGCTTCTATCACTGCCTGATGACGTGTTTGCTATAGTAAGTAGATCACTTTCTCCAAGGGATGTATGTAATCTTGGTTTATGCTGTAGAAACTTGCATGATTTAGCTGCCTCTGAGAAGGTTTGGCTATCACAATGTGAAATGCTTGGGGTGGTTCCTTATCGGGATGTTATTGAATGGCGAAAGGGAGTTTGTTCCTACAAGGCACTTTGTCACTTCTTTGTAAGCATAAAGCCTTTGCTTGGTATTTGGGTTCATCAAAATCCTGAACTCGGCAATGTTGTTTATGTTATGCCTGGTTTTATCTCTGCGGTTGGTT</genome_strand>
        <mrna_strand>ATGACTTATGACTCTTACCAAGTCCAACATTTACATCAATCTGTAGCAATTTTGCATTAGGAAAGTTGATTTCATTTTTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTCTGTAGTTCTTTTTTGATGAATTTGGGAGGTTACAGCAAAATCTTGAATCCCAATTGAGATGTGCGGAAGTGGTACAACTACTACTACTATGTCACCAGACGTTTGTGGATCTATCTTGCTTCTATCACTGCCTGATGACGTGTTTGCTATAGTAAGTAGATCACTTTCTCCAAGGGATGTATGTAATCTTGGTTTATGCTGTAGAAACTTGCATGATTTAGCTGCCTCTGAGAAGGTTTGGCTATCACAATGTGAAATGCTTGGGGTGGTTCCTTATCGGGATGTTATTGAATGGCGAAAGGGAGTTTGTTCCTACAAGGCACTTTGTCACTTCTTTGTAAGCATAACGCCTTTGCTTGGTATTTGGGTTCATCAAAATCCTGAACTCGGCAAGGTTGTTTATGTTATGCCTGGTTTTATCTCTGCGGTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365691" ref_strand="+" ref_description="SGN-E365691 [cLPT-8-K9]">
      <seq>gaggcccaccaagtccaacattcacatcaatctgtagcaattttgtataggaaagttgatttcatttttcagtgggtggaattctgtgggaaccagatgacaaagtatggtttttttgctgtttttctgtatgggttgttagatcttgctttgctttataacccctttcttgtgcttttacccaatttctgtatatctttaagttgatcaagtttttgctgcaaaatcttgaatcccaattcaaaaaagttagggttttttctctcttgagtaattgagttttgatgcctgatcattctgtagtttttttaaaaaaatgaatttcggaagttatggcaaattcttgtatcccaatttaagaaagtaggtttctatgtgaatgattacccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="36439" stop="37433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36739" g_stop="37133" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E365691" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36739" e_stop="37133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTTACCAAGTCCAACATTTACATCAATCTGTAGCAATTTTGCATTAAGAAAGTTGATTTCATTTTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAAGTATGGTTTTTTTTGCTGTTTTTCTGTATGGGCTGTTAGATCTTACTTTGCTTTATAACCCCTTTGTTGTGCTTTTTCTCAATTTCTGTATATCTTTAAGTTGATCAAGTTTTTGCTGCAAAATCTTGAATCTCAATTTAAGAAAGTTAGGGTTTTTTTCTCTCTTGAGTAATTGAGTTTTGATGCCTGATCATTCTGTAGTTTTTAAAAAAAAATGAATTTCGGAAGTTATGGCAAATTCTTGTATCCCAATTTAAGAAAGTAGGTTTCTATGTGAATGATTACCCCTC</genome_strand>
        <mrna_strand>GAGGCCCACCAAGTCCAACATTCACATCAATCTGTAGCAATTTTGTA-TAGGAAAGTTGATTTCATTTTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAAGTATGG-TTTTTTTGCTGTTTTTCTGTATGGGTTGTTAGATCTTGCTTTGCTTTATAACCCCTTTCTTGTGCTTTTACCCAATTTCTGTATATCTTTAAGTTGATCAAGTTTTTGCTGCAAAATCTTGAATCCCAATTCAAAAAAGTTAGGG-TTTTTTCTCTCTTGAGTAATTGAGTTTTGATGCCTGATCATTCTGTAGTTTTTTTAAAAAAATGAATTTCGGAAGTTATGGCAAATTCTTGTATCCCAATTTAAGAAAGTAGGTTTCTATGTGAATGATTACCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E279588" ref_strand="+" ref_description="SGN-E279588 [cLER-5-J20]">
      <seq>caattttgcattaggaaagttgatttcattttttcagtgggtggaattctgtgggaaccatatgacaaagtcattctgtagttcttttttgatgaatttgggaggttacagcaaaatcttgaatcccaattgagatgttcggaagtggtacaactactactactatgtcaccagacgtttgtggatctatcttgcttctatcactgcctgatgacgtgtttgctataatatgtagatcactttctccaagggatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="36476" stop="37922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36776" g_stop="36843" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36844" i_stop="37433" i_length="590">
            <donor d_prob="0.786" d_score="0.94"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37434" g_stop="37622" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="258" r_length="189" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E279588" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36776" e_stop="36843"/>
          <exon e_start="37434" e_stop="37622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTGCATTAAGAAAGTTGATTTCA-TTTTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAAGTATGGTTTTTTTTGCTGTTTTTCTGTATGGGCTGTTAGATCTTACTTTGCTTTATAACCCCTTTGTTGTGCTTTTTCTCAATTTCTGTATATCTTTAAGTTGATCAAGTTTTTGCTGCAAAATCTTGAATCTCAATTTAAGAAAGTTAGGGTTTTTTTCTCTCTTGAGTAATTGAGTTTTGATGCCTGATCATTCTGTAGTTTTTAAAAAAAAATGAATTTCGGAAGTTATGGCAAATTCTTGTATCCCAATTTAAGAAAGTAGGTTTCTATGTGAATGATTACCCCTCTTGAGTAATTGAGCTTTGATGGGCTGTTTGGCAAATCATTTTGTGCTTTTTTTTTTTTTAATGAATTTGGGAAGTTAAAGCAAAATCTTGAATCCCAATTTAAGAAAGTAGGGTTCTTTGTGAATGAATACCCCTCTTGAGTAATTGAGTTTTTGATGGCTGTTTGGCAGATCATTCTGTAGTTTTTTATAATGAAACTGGGAAGTTATTGCAAACTCTTGAATCCCAATTTAAGAAAGTAGGTTCTTTGTGAATGATTATTCCTCTTGAGTAATTGAGTTTTGATGGGCTGTTTTGCAGGTCATTCTGTAGTTCTTTTTTGATGAAATTAGGAGGTTACAGCAAAATCTTGAATCCCAATTGAGATGTGCGGAAGTGGTACAACTACTACTACTATGTCACCAGACGTTTGTGGATCTAGCTTGCTTCTATCACTGCCTGATGACGTGTTTGCTATAGTAAGTAGATCACTTTCTCCAAGGGATGTAT</genome_strand>
        <mrna_strand>CAATTTTGCATTAGGAAAGTTGATTTCATTTTTTCAGTGGGTGGAATTCTGTGGGAACCATATGACAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTCTGTAGTTCTTTTTTGATGAATTTGGGAGGTTACAGCAAAATCTTGAATCCCAATTGAGATGTTCGGAAGTGGTACAACTACTACTACTATGTCACCAGACGTTTGTGGATCTATCTTGCTTCTATCACTGCCTGATGACGTGTTTGCTATAATATGTAGATCACTTTCTCCAAGGGATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345220" ref_strand="+" ref_description="SGN-E345220 [cTOF-13-A16]">
      <seq>gaagtcaaactctaccaatggcaaacgtgatctccttggaaagaattcctctggccacggaagtaagcatgcccagcttcacgagttcctgcagccaggtgatgcaatagggctgacattacatgcttccactgtgaagttatcctcttatcgtgcttggccaaatatgcacgaaagtaaatttgctctgtacaagttgcctatgcggacaccagaagtgggccaagaatatgctggtgtatggggagggacttttggttggcccccggggaggccttctgatgataagcccggaaaagcattgtttcttcttttgctgtcttatgaggagtcccaaggtcagaagctacttattgcgaccaagatattagaaggtacacattatgttttgcatcctaatggctcagctatgtttatagtaaatattgaagaaccttcgaatgatccattcccttggtgcaccgatgggcatgattccaaccctgtagatgttaagcatgcttttatgggtgaaggtattgctaacgggtatggtttccgatatcctggttcaaaacctggttcactctttgtaatccatgataaaatgcttgcttttatatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="38311" stop="39517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38611" g_stop="39217" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E345220" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38611" e_stop="39217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCAAACTCTACCAATGGCAAACGTGATCTCCTTGGAAAGAATTCCTCTGGCCACGGAAGTAAGCATGCCCAGCTTCACGAGTTCCTGCAGCCAGGTGATGCAATAGGGCTGACATTACATGCTTCCACTGTGAAGTTATCCTCTTATCGTGCTTGGCCAAATATGCATGAAAGTAAATTTGCTCTGTACAAGTTGCCTATGCGGACACCAGAAGTGGGCCAAGAATATGCTGGTGTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAGCCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAG</genome_strand>
        <mrna_strand>GAAGTCAAACTCTACCAATGGCAAACGTGATCTCCTTGGAAAGAATTCCTCTGGCCACGGAAGTAAGCATGCCCAGCTTCACGAGTTCCTGCAGCCAGGTGATGCAATAGGGCTGACATTACATGCTTCCACTGTGAAGTTATCCTCTTATCGTGCTTGGCCAAATATGCACGAAAGTAAATTTGCTCTGTACAAGTTGCCTATGCGGACACCAGAAGTGGGCCAAGAATATGCTGGTGTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAACCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E730470" ref_strand="+" ref_description="SGN-E730470 [LA24AH10]">
      <seq>tccgtttatggggagggacttttggttggcccccggggaggccttctgatgataagcccggaaaagcattgtttcttcttttgctgtcttatgaggagtcccaaggtcagaagctacttattgcgaccaagatattagaaggtacacattatgttttgcatcctaatggctcagctatgtttatagtaaatattgaagaaccttcgaatgatccattcccttggtgcaccgatgggcatgattccaaccctgtagatgttaagcatgcttttatgggtgaaggtattgctaacgggtatggtttccgatatcctggttcaaaacctggttcactctttgtaatccatgataaaatgcttgcttttatatggaaggagtccaggtctgtgttggccttgcagaggctcgatttgcaagaggttttgagcaagggggaaaggatccctgctctacctccggtttccaactttgcataccttaccaggtcctattcaaacgtgtttgccaacggtctgacttcaccaaggcaaaatcatccgtagggatgacatgcaagaagagcaaagaatcttttgctagaaatggccgaaacccacaaaaaaataggtggaaaacagcctaagtttgttgtacttgtaagttcgtttaattcacacagcagggtgattgaggtgcgtggtttgcaagttactcaactgcttgtagcgtatggcgagatttttctacttcctatttatgattcctgggcaggaataaagctttttcaaaccattctgtagttttataatgaggatttccatttctatatttattgaacaatctttgtgctgttgttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="38547" stop="39980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38844" g_stop="39680" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="837" r_length="837" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E730470" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38844" e_stop="39680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAGCCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAGGAGTCCAGGTCTGTGTTGGCCTTGCAGAGGCTCGATTTGCAAGAGGTTTTGAGCAAGGGGGAAAGGATCCCTGCTCTACCTCCGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCAACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCTGTTGTTAA</genome_strand>
        <mrna_strand>TCCGTTTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAACCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAGGAGTCCAGGTCTGTGTTGGCCTTGCAGAGGCTCGATTTGCAAGAGGTTTTGAGCAAGGGGGAAAGGATCCCTGCTCTACCTCCGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCTACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCTGTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E731307" ref_strand="+" ref_description="SGN-E731307 [LA26DA03]">
      <seq>ggtgtatggggagggacttttggttggcccccggggaggccttctgatgataagcccggaaaagcattgtttcttcttttgctgtcttatgaggagtcccaaggtcagaagctacttattgcgaccaagatattagaaggtacacattatgttttgcatcctaatggctcagctatgtttatagtaaatattgaagaaccttcgaatgatccattcccttggtgcaccgatgggcatgattccaaccctgtagatgttaagcatgcttttatgggtgaaggtattgctaacgggtatggtttccgatatcctggttcaaaacctggttcactctttgtaatccatgataaaatgcttgcttttatatggaaggagtccaggtctgtgttggccttgcagaggctcgatttgcaagaggttttgagcaagggggaaaggatccctgctctacctccggtttccaactttgcataccttaccaggtcctattcaaacgtgtttgccaacggtctgacttcaccaaggcaaaatcatccgtagggatgacatgcaagaagagcaaagaatcttttgctagaaatggccgaaacccacaaaaaaataggtggaaaacagcctaagtttgttgtacttgtaagttcgtttaattcacacagcagggtgattgaggtgcgtggtttgcaagttactcaactgcttgtagcgtatggcgagatttttctacttcctatttatgattcctgggcaggaataaagctttttcaaaccattctgtagttttataatgaggatttccatttctatatttattgaacaatctttgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="38546" stop="39972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38846" g_stop="39672" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E731307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38846" e_stop="39672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAGCCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAGGAGTCCAGGTCTGTGTTGGCCTTGCAGAGGCTCGATTTGCAAGAGGTTTTGAGCAAGGGGGAAAGGATCCCTGCTCTACCTCCGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCAACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCT</genome_strand>
        <mrna_strand>GGTGTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAACCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAGGAGTCCAGGTCTGTGTTGGCCTTGCAGAGGCTCGATTTGCAAGAGGTTTTGAGCAAGGGGGAAAGGATCCCTGCTCTACCTCCGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCTACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355304" ref_strand="+" ref_description="SGN-E355304 [cTOS-18-K23]">
      <seq>cggtttccaactttgcataccttaccaggtcctattcaaacgtgtttgccaacggtctgacttcaccaaggcaaaatcatccgtagggatgacatgcaagaagagcaaagaatcttttgctagaaatggccgaaacccacaaaaaaataggtggaaaacagcctaagtttgttgtacttgtaagttcgtttaattcacacagcagggtgattgaggtgcgtggtttgcaagttactcaactgcttgtagcgtatggcgagatttttctacttcctatttatgattcctgggcaggaataaagctttttcaaaccattctgtagttttataatgaggatttccatttctatatttattgaacaatctttgtgctgttgttaattatgaaagagttatagtttccttgaagcaggaatgaggttgcaccttctcttgatattatttgttgtaaacttatcttctatgaaaaaattgattgagttaatgttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="39000" stop="40092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39300" g_stop="39800" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E355304" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39300" e_stop="39800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCAACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCTGTTGTTAATTATGAAAGAGTTATAGTTTCCTTGAAGCAGGAATGAGGTTGCACCTTCTCTTGATATTATTTGTTGTAAACTTATCTTCTATGAAAAAATTGATTGAGTTAATGTTTTCCATTGGGAAT</genome_strand>
        <mrna_strand>CGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCTACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCTGTTGTTAATTATGAAAGAGTTATAGTTTCCTTGAAGCAGGAATGAGGTTGCACCTTCTCTTGATATTATTTGTTGTAAACTTATCTTCTATGAAAAAATTGATTGAGTTAATGTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711851" ref_strand="+" ref_description="SGN-E711851 [FB03AG04]">
      <seq>ccctctacttcgtaaaactagcatcccgaggaattcaaaatccaaaacctctatgacatagtgaatttgctgttctgggctgtggtgtaaatttaacaataccatcactggaagtgatgctgaattgagggtgaaatgaagcataattatgtcatcaaaaagtgagatatattatggagtatgagcacctgattggtgtttcatttttgaagaggaaaatatggatgtcccttcagtagctattatagcagtgccctcaaatcgctgtatccgtgacaggattcttcgagcctcaacctgtagaaagacaaagaatggtagaatatagaaccatccaaacatgatgtactgcgatattcagctacttgtggatgcagtcgccgccacctagtgtacagcattttgtgcacattttccttatatgagaggcctcaaatgttgtatcaagcgataactgtaattaaaccgcgttgaaaattagttctttgtgattgtgatcattgggtgtttagcccctagtgatttttgtatagatgggcttaacacccttataaggaataccatataatgaaaatttcattgtaatttccctannaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="44331" stop="27854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44031" g_stop="43903" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43902" i_stop="43573" i_length="330">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43572" g_stop="43109" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="593" r_length="464" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43108" i_stop="40252" i_length="2857">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.135" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40251" g_stop="40229" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="616" r_length="23" r_score="0.783"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E711851" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44031" e_stop="43903"/>
          <exon e_start="43572" e_stop="43109"/>
          <exon e_start="40251" e_stop="40229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCAACTTCGTAAAACTAGCATCCCGAGGAATTCAAAATCCAAAACCTCTATGACATAGTGAATTTGCTGTTCTGGGCTGTGGTGTAAATTTAACAATACCATCACTGGAAGTGATGCTGAATTGAGGTATGCTTCTATGTCTTTCATGGAGAAAAGTTCATATGGTTTGATGTGTCATTACTGTCTGTTGTTAGCTCCTGGCATTTAGCTGTGAAGTATTGAGTACATTTCCTGATTCTTTTCTTTTTATTTCCACTTGTTTAGCTATTGTTGCCCTTGTACCCAAGATCCTGAGCTATGCCAAGTGAAGCGTCCTCCTTTCTTGTATCCCAGTTCTTAAACGTAGTACCCAGTACTGGTTATTATTTTATTCTTGGCTAATCCAAGCATCATTTTTCCAGATGTTTGGATTTTGTTGTCTTAAAATAACCTTGGTTCATTTCTATTGGCATTCAGGGTGAAATGAAGCATAATTATGTCATCAAAAAGTGAGATATATTATGGAGTATGAGCACCTGATTGGTGTTTCATTTTTGAAGAGGAAAATATGGATGTCCCTTCAGTAGCTATTATAGCAGTGCCCTCAAATCGCTGTATCCGTGACAGGATTCTTCGAGCCTCAACCTGTAGAAAGACAAAGAATGGTAGAATATAGAACCATCCAAACATGATGTACTGCGATATTCAGCTACTTGTGGATGCAGTCGCCGCCACCTAGTGTACAGCATTTTGTGCACATTTTCCTTATATGAGAGGCCTCAAATGTTGTATCAAGCGATAACTGTAATTAAACCGCGTTGAAAATTAGTTCTTTGTGATTGTGATCATTGGGTGTTTAGCCCCTAGTGATTTTTGTATAGATGGGCTTAACACCCTTATAAGGAATACCATATAATGAAAATTTCATTGTAATTTCCCTAATCTGTCTCCACTTCTTTTGTTGGGCTTTTTCATTCATTTATAAGCAGGATTTTGAGCCTCTATTTCTTCCTCTTCTAGTTGAAATTTTCTTATACAAGCAAGTGAAGCTTACCCTATTAATTTTTTTTTTTGTCATGTATAATTTTTCTATTACATTGTGGGATCAAGGGGAAGAGATATAAAAGCTTAGATTACTACTATTGAAAGCTTAATTACTTTACTACTAGTGAACTACTGTTTACAGCCATACTTTTGAACAATGAGATGAATTTGTGAACTTAGACCTAGTTAGTCACTCACAATAGTTCCAGTCTTCTTTAATTTCACTGTTAAATGCTTTTCAAACAAATTAGAACGTAGGGAGAGTTTCAAACATTATGATGAAAATTCCTCATTTTGAAGCCAAGAATTTTTCTTGGAGCTCCTTCCAAAGAGGTTTGAGATGAGATTTTCAAATGGATATATCCTAGTAATATTGCATTTTTACGGAGAATTTAATTTCACTAGAGCCATGTCGAAGACAGCAAGACAGTCATAAGTCATAACACTGAGATGGTTCGAGCATGTGAAGAGAAGAAACACAAATGTCAGTGAGAAAGGTAGGGAAGCATGATAATCAATGGATAATTAATAGATAGTCGAGTGATTTGTCTTTGTCCGGTGGTTGAACATCATTCTAGTTTGGAGCAACTACGTGCTCTCTTACCAATATTATTATTACTAGTCTCTAGGCACGTGCGTTGCACGTGTGTCTTGTGTTAATTAGTACAAAAAATTATATGATATAGATGCTACTAAAATTTGCAAGTAATATGAGTAATTAAATTTTGAAAAAGAATTATAGTTGTTTGTAGTTATACACAATCAATTAAATTGATATATGTGATATTTTCCTTATATAATTCTAATATATCTTATACTTGGTACAATAGTTAATTTTTTTTAAAAATATTTTAACAACAAATAATTTATATTTTACATAAGTAACGGTGATTATGTTTGCAAGTGTTCCATACATGTTAAAGTTTGTATCTCGTGTAAGAAAATATCACCTCTTTTTTGTAGACACATACATATTAAGAAGTTGTTGCCGAATAAAAGTAATATTTCATGATGTACAAATGTTTCTTTACGGTGGATAATGTATCATTGTCAATCTCATGGGATAGAGATAGTTAAATATTATTGGCATTAGAAAATAACATCCAATTGCACGAAAAACTTTCTTCGTGTGATTCAAGATTATGAATCCTTTCATATGTAAATTTCAGGAAAATATTAATTAAATTATTTAAATATGATTATATTATGGAATATAATATAATCTATCTATACTCACAAATAAGAAACTTGATATAAATGGTTGAAATATTTAAAATATCTTATTTAAAAATATTGGATGTACATCTTCAAAAAATGTATCCACTCAAAGAAATAATAATTTTGTATGAATCTAAAGTCCATATCATTTATACTACTAAAAAATGTCATACATATCACAATTTTTTTTTACAGATTACATTATATTTTTGTGAAACGAACATCATATTTATTACTTACCTGATGATGTGAATGAGAAGTGAAGAATTTAAAATTGTAAGATAAAAAACTGAAACAGAAGAAAAATAAATAAGAATTAACATTAGCAAAAACAATAAGATATATATTAAAGAAAAACAAATACAAGAAATATCAAAAACTATATAGAGAGGATAAAAGTATAGAAATGACAATAGATTACACTATAGATAGAGAGAGATATTAATGAAGTTAGCTATTCATATTCCTAAATTCCGTTTCTGACTCTTCAACTTCTTTGAACTATTCCGGAATTTGAGTTAGGGGTAGAGTGACTGCATGAAATGTCTAAATCATCAGAAGCATTGCCCTCTGACAATAATAAGAAGGTCTCGGAGGTTTCTCAAGATGCAGGTGTTGGAGTTGATATAATGAGATTCGATGCACCTATTGTACCATTTAATTTAATTTAATTAAATATACATCTATAAAATTGAAAAACATCTTAATGCTAAGAAAAATGCAAATATCTTGATGCTTAGAAAAGTGAAAATACTTTAAAGTCATATTGGAGGAGGTGTAACTCACAACTGATGAATAAATAATTAACTTTTCTGTTGGATTAGTAGTTAATAATTAATTAATATAAATACTTTATAACATTTTAATTAATATAAGGGTAAAAAAGTAAATAACTTTTCACTTTGGTGCTTTCCACTTCTAATAATATATTTATTCATTATTTATTTATATTTATATTAATATTTATATTTATATCATTATTATTAGGCATTTATGCTAGTGTATTCTTACTTTGATTATCAATATAATTTCTGTCGTAATATTTTTCTTTCTTCAATATTTTTTATAAATATATCCTCAAACATAATTTTTCTTAAACCAAAGTTCTCTCGAAAATAAACTTTCTGACCCTCAGGTTCCACTAACATACAAATATATGAATTCAGAGATATCCTTAAAAAAAAGTTATTTTCTTTTTCAGTTCAAAAAATACTTTTTAACACATAATCCATTGTTTTCTTGTATAAATCACACAATTTTCATGTTCAAACTAAACTCACATGTTAGTTGAACCATTTCTGATGCATTTTCTTTGGCACATACAGGGGTAGGGCTCGGACTACGTTCCGGAAAAAGCAGCCTACTTGTGGGGCACTGTGTACTTACAGCCTCTACGATAAGCAAGTGAATATGGGGTAGGGGGTGGGGTGGGGTGCCATACCAAAGTTTTCAACTCACAAATACTCATGTTGCATTTTATGAAATTAATCTTATTAGTGATTTATGGGGACAAAATCTCTTGATTTACTAAAATAGATAAAAAAAAAAAAAAGAAATTA</genome_strand>
        <mrna_strand>CCCTCTACTTCGTAAAACTAGCATCCCGAGGAATTCAAAATCCAAAACCTCTATGACATAGTGAATTTGCTGTTCTGGGCTGTGGTGTAAATTTAACAATACCATCACTGGAAGTGATGCTGAATTGAG..........................................................................................................................................................................................................................................................................................................................................GGTGAAATGAAGCATAATTATGTCATCAAAAAGTGAGATATATTATGGAGTATGAGCACCTGATTGGTGTTTCATTTTTGAAGAGGAAAATATGGATGTCCCTTCAGTAGCTATTATAGCAGTGCCCTCAAATCGCTGTATCCGTGACAGGATTCTTCGAGCCTCAACCTGTAGAAAGACAAAGAATGGTAGAATATAGAACCATCCAAACATGATGTACTGCGATATTCAGCTACTTGTGGATGCAGTCGCCGCCACCTAGTGTACAGCATTTTGTGCACATTTTCCTTATATGAGAGGCCTCAAATGTTGTATCAAGCGATAACTGTAATTAAACCGCGTTGAAAATTAGTTCTTTGTGATTGTGATCATTGGGTGTTTAGCCCCTAGTGATTTTTGTATAGATGGGCTTAACACCCTTATAAGGAATACCATATAATGAAAATTTCATTGTAATTTCCCTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NNAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E208202" ref_strand="+" ref_description="SGN-E208202 [cLEC-37-E10]">
      <seq>tttattctgatgatgatcttagtttgcacctctactctataaatggcaaacacatttcatcttctgaatccaatggccgcctaaactgtcttgaactcagtagctgcggagagttcttggtttgtgctggagatcaagggctaatcatcgtacgctctatgaactcacttgagattgtggggaagtacaatggtattgggaaaatagtaacttcactaactgtgacaccggaagaatgctttatagctgggactaaggatggaagtcttcttgtttattcaatagaaaaccctcaacttcgtaaaactagcatcccgaggaattcaaaatccaaaacctctatgacatagtgaatttgctgttctgggctgaggtgtaaatttaacaataccatcactggaagtgatgctgaattgagggtgaaatgaagcataattatgtcatcaaaaagtgagatatattatggagtatgagcacctgattggtggttcatttttgaagaggaaaatatggatgtcccttcagtagctattata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="44620" stop="43155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44320" g_stop="43903" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43902" i_stop="43573" i_length="330">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43572" g_stop="43455" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="536" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E208202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44320" e_stop="43903"/>
          <exon e_start="43572" e_stop="43455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGAACTCAGTAGCTGCGGAGAGTTCTTGGTTTGTGCTGGAGATCAAGGGCTAATCATCGTACGCTCTATGAACTCACTTGAGATTGTGGGGAAGTACAATGGTATTGGGAAAATAGTAACTTCACTAACTGTGACACCGGAAGAATGCTTTATAGCTGGGACTAAGGATGGAAGTCTTCTTGTTTATTCAATAGAAAACCCTCAACTTCGTAAAACTAGCATCCCGAGGAATTCAAAATCCAAAACCTCTATGACATAGTGAATTTGCTGTTCTGGGCTGTGGTGTAAATTTAACAATACCATCACTGGAAGTGATGCTGAATTGAGGTATGCTTCTATGTCTTTCATGGAGAAAAGTTCATATGGTTTGATGTGTCATTACTGTCTGTTGTTAGCTCCTGGCATTTAGCTGTGAAGTATTGAGTACATTTCCTGATTCTTTTCTTTTTATTTCCACTTGTTTAGCTATTGTTGCCCTTGTACCCAAGATCCTGAGCTATGCCAAGTGAAGCGTCCTCCTTTCTTGTATCCCAGTTCTTAAACGTAGTACCCAGTACTGGTTATTATTTTATTCTTGGCTAATCCAAGCATCATTTTTCCAGATGTTTGGATTTTGTTGTCTTAAAATAACCTTGGTTCATTTCTATTGGCATTCAGGGTGAAATGAAGCATAATTATGTCATCAAAAAGTGAGATATATTATGGAGTATGAGCACCTGATTGGTGTTTCATTTTTGAAGAGGAAAATATGGATGTCCCTTCAGTAGCTATTATA</genome_strand>
        <mrna_strand>TTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGAACTCAGTAGCTGCGGAGAGTTCTTGGTTTGTGCTGGAGATCAAGGGCTAATCATCGTACGCTCTATGAACTCACTTGAGATTGTGGGGAAGTACAATGGTATTGGGAAAATAGTAACTTCACTAACTGTGACACCGGAAGAATGCTTTATAGCTGGGACTAAGGATGGAAGTCTTCTTGTTTATTCAATAGAAAACCCTCAACTTCGTAAAACTAGCATCCCGAGGAATTCAAAATCCAAAACCTCTATGACATAGTGAATTTGCTGTTCTGGGCTGAGGTGTAAATTTAACAATACCATCACTGGAAGTGATGCTGAATTGAG..........................................................................................................................................................................................................................................................................................................................................GGTGAAATGAAGCATAATTATGTCATCAAAAAGTGAGATATATTATGGAGTATGAGCACCTGATTGGTGGTTCATTTTTGAAGAGGAAAATATGGATGTCCCTTCAGTAGCTATTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275811" ref_strand="+" ref_description="SGN-E275811 [cLEN-18-F23]">
      <seq>tgaagcccctttccatattttgtgtggtcatgatgacgttattacatgcttgtatgcaagtattgagcttgatatagttataagtggatcaaaagatggaacttgtgttttccatacgctacgggatgggagatacgttagatccctacaacatccatctggcagtccactgtcaaagcttgttgcatcacgtcatggaaggattgttctttattctgatgatgatcttagtttgcacctctactctataaatggcaaacacatttcatcttctgaatccaatggccgcctaaactgtcttgaactcagtagctgcggagagttcttggtttgtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="44829" stop="43891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44529" g_stop="44191" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E275811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44529" e_stop="44191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCCCTTTCCATATTTTGTGTGGTCATGATGACGTTATTACATGCTTGTATGCAAGTATTGAGCTTGATATAGTTATAAGTGGATCAAAAGATGGAACTTGTGTTTTCCATACGCTACGGGATGGGAGATACGTTAGATCCCTACAACATCCATCTGGCAGTCCACTGTCAAAGCTTGTTGCATCACGTCATGGAAGGATTGTTCTTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGAACTCAGTAGCTGCGGAGAGTTCTTGGTTTGTGCTGG</genome_strand>
        <mrna_strand>TGAAGCCCCTTTCCATATTTTGTGTGGTCATGATGACGTTATTACATGCTTGTATGCAAGTATTGAGCTTGATATAGTTATAAGTGGATCAAAAGATGGAACTTGTGTTTTCCATACGCTACGGGATGGGAGATACGTTAGATCCCTACAACATCCATCTGGCAGTCCACTGTCAAAGCTTGTTGCATCACGTCATGGAAGGATTGTTCTTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGAACTCAGTAGCTGCGGAGAGTTCTTGGTTTGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258275" ref_strand="+" ref_description="SGN-E258275 [cLEG-49-M7]">
      <seq>ggaacttgtgttttccatacgctacgggatgggagatacgttagatccctacaacatccatctggcagtccactgtcaaagcttgttgcatcacgtcatggaaggattgttctttattctgatgatgatcttagtttgcacctctactctataaatggcaaacacatttcatcttctgaatccaatggccgcctaaactgtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="44732" stop="43927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44432" g_stop="44227" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E258275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>206</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44432" e_stop="44227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACTTGTGTTTTCCATACGCTACGGGATGGGAGATACGTTAGATCCCTACAACATCCATCTGGCAGTCCACTGTCAAAGCTTGTTGCATCACGTCATGGAAGGATTGTTCTTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGA</genome_strand>
        <mrna_strand>GGAACTTGTGTTTTCCATACGCTACGGGATGGGAGATACGTTAGATCCCTACAACATCCATCTGGCAGTCCACTGTCAAAGCTTGTTGCATCACGTCATGGAAGGATTGTTCTTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207171" ref_strand="+" ref_description="SGN-E207171 [cLEC-30-G16]">
      <seq>ccgattccaattgctcatcctctacgatttgcccctggttctatcaacctaacgtcaatggtttcatgtgcaagcagttgtccgtcagctactctgtatgttaatgtgctggactcgaacattgttcttgtgaaccagggcctcagcatgtctgttaagacatgggtgaccacccaattgcagtccggtgggaactttaccttctctagctcacaggatccttttttcgggattggttctgatatccttcctcctcggaaaatcgggagtcctctggctgaaaatatcgagcttggagcacaatgctttggaacattatcaacaccgtctgaaaattttttgataacatgtggtacctgcgaaaacagctttcaggttatttcgctaactgatggaagaatggtacagagcattagacaacataaagatgttgtgagctgcatttcagttacatctgatggaagcatcctggctactggaagttacgacacaacagtaatgatctgggagattgtgcgcattagaacctctgaaaagcgagtaaagcacactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="47656" stop="44264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47356" g_stop="47141" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47140" i_stop="47061" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47060" g_stop="46829" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="448" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46828" i_stop="44669" i_length="2160">
            <donor d_prob="0.832" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44668" g_stop="44564" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="553" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E207171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47356" e_stop="47141"/>
          <exon e_start="47060" e_stop="46829"/>
          <exon e_start="44668" e_stop="44564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTCCAATTGCTCATCCTCTACGATTTGCCCCTGGTTCTATCAACCTAACGTCAATGGTTTCATGTGCAAGCAGTTGTCCGTCAGCTACTCTGTATGTTAATGTGCTGGACTCGAACATTGTTCTTGTGAACCAGGGCCTCAGCATGTCTGTTAAGACATGGGTGACCACCCAATTGCAGTCCGGTGGGAACTTTACCTTCTCTAGCTCACAGGTAAGTTTTAGAGCAATAACAAGTCAAGCATTATGATTAGCTAGTCAACCTTGAAGTCATTATTTTTAACTTTCTTGCAGGATCCTTTTTTCGGGATTGGTTCTGATATCCTTCCTCCTCGGAAAATCGGGAGTCCTCTGGCTGAAAATATCGAGCTTGGAGCACAATGCTTTGGAACATTATCAACACCGTCTGAAAATTTTTTGATAACATGTGGTACCTGCGAAAACAGCTTTCAGGTTATTTCGCTAACTGATGGAAGAATGGTACAGAGCATTAGACAACATAAAGATGTTGTGAGCTGCATTTCAGGTAATTTTCATGATTGAAAGATGTGACAGCTTGTGTTTGGAGCTTCTAGCTAACAAATTTACACACTTCATTGATTCTCTGGAAAAATGAAGGCTGAATGCAGATAATTCTTGTGATATAGTAATTAAATTAACGGAACTGATAGCATCAACATTGAACTGACTTGAGCGCTCCAGAGAATCTATTTGTTGTGCGAGGATGTAAAATATAAATCTTGTTGTCCATTTAAAATTGTTTGCTAACAGCAGACGTCTTGACTGTTCGGTGCTCAATGCTCATAGTGTCTTTCGGTTGAATATTGGTGCAAGGCAACATGTCAATTTTTTTTTCTTTTGTAATTGGTGAAGTTGTATTCCTCAGCATTAAGGATATGCTGGAGACCTCACGTGTCAAAAAATGTTTAAATAAATAACGGTGCAGCAGGTATTTTGCTTGGTACTCCTGGTTCTTGATACTCTTGCTTAGCTCTTACTATTTTTTGTCATAGAGAAAAAGCAAACACAGAAAGTAGGGGCTTCTCATTCTATAGCTGAAAATTATTTTGAGTTCTGGGAGAACTGCAGAAAACAACTGAAAAGCTGTTTCTGAATTTTTGTCAGCACATTTTGTCATCTCTGCCAAGCTTCTTGATTTCCCACTTAAATCTTCTTTCACAACGCAAAAGACCTTCTAACGTTAACCTCCACCCCGCATCTATGTTAAATTATAAGGATCCATAGAGAGAGAGAGGAGACTCGTGAGCTTTCTAAAAAGTGAAATTTAATATTTTGGGAACTAGGACTTCAAATCAAGAAGGCAAAGCTTTCATCACACCTGATTACAGTATTTATGTACTTATATTACATGTTTATTGCTTATAGTGTTGTGAATCAGTTCGAGACTAACAATTTGTCTACCAGTATCAGTAAATACTCCTACATGGTTTGAGTGTCTGTGTGAGATAGGTCATGTTTTTATGCCAAATTTGAGGGCGGGGTGGTGGTTCCTGTCACGTCGATACAGTTAATTGATAACCTTTTGACGTTGAAGAATACCAAAATATCAGATACTTGTGGTTCAACCTAGGCAAGGAGGAATAATAAATGTGTAGTATAGCCCTGTACCTATTTTTTTTTTTTGAAAAAGTTAAAGTTGCAAGTATAGCTCTGTAACTATTGAAGGTGGTGTTCAATTTTTTTTAAAAAAAAACAATTGAAGGTGGTGTATGTGTGTCTGCATTTATTTATTTTTTTGTTTTTTCCCTCTTGAGAGGTGGTAGGAATTGTCCAGATGAGGGACAATATTCATTGCTACGAGCAGGATGGGGCACAATTCTGAAACCTTTTTTTTTCTTTTTGGTCTTTCCATGGCTTCCTATAGGAATGGTCACAGATGAGGGCCAACTTTCATTACCACAGTTGGAATGTCAACTTTGTATCTCTTTCTTTTATGACTTTTAGATCTTCATAGACTGTCTAGGATGAATATTATCAGAAAATAAGCATGTACTGGCCTCGATATTTGATGCAAGTCATCAGAGTTTTCCATAAGCATCCTACCCATCTAAAAAGAAAAATGGAAAATAGTGTTGATGATTTTTGGATTTTGTTAGCTCCCTTATATTAGCATAGGTATAGTTTTGCAGCTAGCCTTTTGCTGTTGACAGTTTTTTTTTTAAAAAAAACTTTTAGCTCCTTCTAGGAATTGTACTGGAGCCAGCCTTTTGACCCTTATGTAATTGGGCTTCTACATTTTTTGCCCGTCAGCCGAACTTAGTTATGGCCGCTAGCCCAAATATCCAAAATCTATACATTGATCATGTATATTATACTTAAATACACAAAACTTGTACATTTGATAACTATTTTGTAAACTAGATCTCCCAAAAACCTCCATCTTCTTGATGCCTTAACTAAGGCAATTTACTTTATAAAAAAAGGAACAAGAAACCTTCTTTTGTTTTGTTTCTTTAAATATCCTGTCTTTTGTAGACAACCATATTTTGGGATAGGTTCTCTGCTTCTTTGGTTATACTTCCTGTATGCCGGAGTTTTCTTCTTCCAACATCAATAAAATTGTTTACTTTATCAAAATGTACTGCCTGGTTACAGCACTGGAAAGACATATTTCTTAGTTATTCTATATTTTACAGTAATGCTAAGCCATTTTTGATTGTTGCAGTTACATCTGATGGAAGCATCCTGGCTACTGGAAGTTACGACACAACAGTAATGATCTGGGAGATTGTGCGCATTAGAACCTCTGAAAAGCGAGTAAAGCACACTC</genome_strand>
        <mrna_strand>CCGATTCCAATTGCTCATCCTCTACGATTTGCCCCTGGTTCTATCAACCTAACGTCAATGGTTTCATGTGCAAGCAGTTGTCCGTCAGCTACTCTGTATGTTAATGTGCTGGACTCGAACATTGTTCTTGTGAACCAGGGCCTCAGCATGTCTGTTAAGACATGGGTGACCACCCAATTGCAGTCCGGTGGGAACTTTACCTTCTCTAGCTCACAG................................................................................GATCCTTTTTTCGGGATTGGTTCTGATATCCTTCCTCCTCGGAAAATCGGGAGTCCTCTGGCTGAAAATATCGAGCTTGGAGCACAATGCTTTGGAACATTATCAACACCGTCTGAAAATTTTTTGATAACATGTGGTACCTGCGAAAACAGCTTTCAGGTTATTTCGCTAACTGATGGAAGAATGGTACAGAGCATTAGACAACATAAAGATGTTGTGAGCTGCATTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATCTGATGGAAGCATCCTGGCTACTGGAAGTTACGACACAACAGTAATGATCTGGGAGATTGTGCGCATTAGAACCTCTGAAAAGCGAGTAAAGCACACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E710075" ref_strand="+" ref_description="SGN-E710075 [FA54AE08]">
      <seq>tatttgcctacctccatgggctaaggggtgtgctgaggaatttgttagtaagaacagagaggcccttgaaagtgaatatgtgagctcaaatctacatcaatggattgatttggtatttggctacaagcagcggggaaaaccagcagttgaggcagcaaattttttttactatttgacatatgaagatgctgtggatctggataccatggatgatgaattgcaaaggtctgccatagaagatcaaattgccaactttggtcaaacaccaattcaacttttccggaagaaacatccgagaacaggacctccgattccaattgctcatcctctacgatttgcccctggttctatcaacctaacgtcaatggtttcatgtgcaagcagttgtccgtcacctactctgtatgttaatgtgctggactcgaacattgttcttgtgaaccagggcctccacatgtctgttaagacatgggtgaccacccaattgcagtccggtgggaactttaccttctctagctcacaggatccttttttcggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="49087" stop="46745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48787" g_stop="48763" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48762" i_stop="47726" i_length="1037">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47725" g_stop="47600" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="151" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47599" i_stop="47513" i_length="87">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47512" g_stop="47141" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="523" r_length="372" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47140" i_stop="47061" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47060" g_stop="47045" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="539" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E710075" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48787" e_stop="48763"/>
          <exon e_start="47725" e_stop="47600"/>
          <exon e_start="47512" e_stop="47141"/>
          <exon e_start="47060" e_stop="47045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGCCTACCTCCATGGGCTAAGGTATACTCGTACTGCTTATTTAAACTGAAAATGCTTGTTTAAATTCTTCTTCATTGCCATATGATGTATGTTTATAGCCTACTTGAGTGGGAAAATATGAAAGAATACCTAAGAAAGGGAAGCAGGAGCAAACTATAAGAGGTTCTTTATGCCTATAAATGGAATCCAGCCTAACACAGTTGATTTCTAGAGCATGTTTATGTGGCCTGTCAGATACAATAGGCAGGGATTGGAATAACTTATATGACCTTATTTGATTCAAATGCCTTACCATTTCAAACAGGATTTAAATCTTCAAATTTGAGCACCAATGTATTAATGGCAAAATAACCCCTTTGGATGCATCTGTATACCCGATATGTAACTAGTTTTATCTCAAAGACACTCCTGCATATGTAACTAGTTCTATCGTTCATGTATGGACTAACAATTGAATTTATAGGCAAGAGCAAGGTTAACCAAAAGAGTTCTCTGATAATATGTAAGCATCCAACTTAAAATCTTAAATTAGTGGGTGGAGTAGTTTAGGACTTGATACCTATTGCCTTGTTGGATGCACATAGTCTCTGTTTGGGATGCAATTTGAGTTGACCTACTAGAACTTTGACAAAAAATCAAAACCAAAATACAGTGGAGATTGCTCAAATAATCGAAGTTCTAGTAGTATGCACCCAACTCATTCTTGTTTTCAACAGGTTCTACTATGGTTCACACATGGAACACTCTATTGGCATGCATTAGAGTATGGGAAAAGAACAGTAGATGTCTTAAAACAAGGTTGTTACAGTGCATAGACTAAAATGCAAATGCTTATCCACTTGGATTTTTTGGGCAAAATGAAAGCTGTATCTGATACAGACATGTGATATGAAATTTCCCAGTTCCCTCCTGGCACAAATTGATTGGCTCTTTTTTCACTTGTATATAAGTTGGCACCCTCTTACTTTAAGGAGCTAACCTTTGTGCGAAAGTTCTAGTGATCTTCTTTACTATTTAGTGTATACAATGTTTAGAAACTAATTTTCAAATGCATGTAGGGGTGTGCTGAGGAATTTGTTAGTAAGAACAGAGAGGCCCTTGAAAGTGAATATGTGAGCTCAAATCTACATCAATGGATTGATTTGGTATTTGGCTACAAGCAGCGGGGAAAACCAGCAGTTGAGGTATAGGGAGTTAGCTTTCACTTTAAATAATTCTTGAATCAGTTGCTGGTTTTGAATTTCACTGATTTTGAAGATATTGTCATACAGGCAGCAAATATTTTTTACTATTTGACATATGAAGATGCTGTGGATCTGGATACCATGGATGATGAATTGCAAAGGTCTGCCATAGAAGATCAAATTGCCAACTTTGGTCAAACACCAATTCAACTTTTCCGGAAGAAACATCCGAGAAGAGGACCTCCGATTCCAATTGCTCATCCTCTACGATTTGCCCCTGGTTCTATCAACCTAACGTCAATGGTTTCATGTGCAAGCAGTTGTCCGTCAGCTACTCTGTATGTTAATGTGCTGGACTCGAACATTGTTCTTGTGAACCAGGGCCTCAGCATGTCTGTTAAGACATGGGTGACCACCCAATTGCAGTCCGGTGGGAACTTTACCTTCTCTAGCTCACAGGTAAGTTTTAGAGCAATAACAAGTCAAGCATTATGATTAGCTAGTCAACCTTGAAGTCATTATTTTTAACTTTCTTGCAGGATCCTTTTTTCGGGA</genome_strand>
        <mrna_strand>TATTTGCCTACCTCCATGGGCTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGTGCTGAGGAATTTGTTAGTAAGAACAGAGAGGCCCTTGAAAGTGAATATGTGAGCTCAAATCTACATCAATGGATTGATTTGGTATTTGGCTACAAGCAGCGGGGAAAACCAGCAGTTGAG.......................................................................................GCAGCAAATTTTTTTTACTATTTGACATATGAAGATGCTGTGGATCTGGATACCATGGATGATGAATTGCAAAGGTCTGCCATAGAAGATCAAATTGCCAACTTTGGTCAAACACCAATTCAACTTTTCCGGAAGAAACATCCGAGAACAGGACCTCCGATTCCAATTGCTCATCCTCTACGATTTGCCCCTGGTTCTATCAACCTAACGTCAATGGTTTCATGTGCAAGCAGTTGTCCGTCACCTACTCTGTATGTTAATGTGCTGGACTCGAACATTGTTCTTGTGAACCAGGGCCTCCACATGTCTGTTAAGACATGGGTGACCACCCAATTGCAGTCCGGTGGGAACTTTACCTTCTCTAGCTCACAG................................................................................GATCCTTTTTTCGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="88600" stop="87522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88300" g_stop="87822" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88300" e_stop="87822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGTTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGATGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="87674" stop="88611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87974" g_stop="88311" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87974" e_stop="88311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACATCAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAACCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTC-GGTTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTC-ATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="88601" stop="87765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88301" g_stop="88063" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88301" e_stop="88063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGTTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGATGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="89199" stop="87845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88900" g_stop="88480" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="418" r_length="418" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88479" i_stop="88445" i_length="35">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88444" g_stop="88145" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="717" r_length="299" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88900" e_stop="88480"/>
          <exon e_start="88444" e_stop="88145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTTGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTAATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAATGAGATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCATGAACCGACACGTAGTATTAGGGGATCGAGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACGGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGG-GTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGG...................................GTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATA-TGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="89199" stop="88198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88900" g_stop="88497" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88900" e_stop="88497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTTTGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTAATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAATGAGATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705134" ref_strand="+" ref_description="SGN-E705134 [FA26BA11]">
      <seq>ctatgacacgcagacgtcgacgacaagggaagtggaggaggaagtggtggtgcaggatgcggaggagagagttgataacgaagatacattgatacagaagtcgaaggagagctattacctgcagctgacgctcgctaaaaagcttgtagagcaagcaatgcttacttctggagagcctattcttctgcaggagtgcaaaaatatcaagggccttggtggatcttctgatgctcaaactgtatcttatcgtttatgggtgagtggttcgttgtcttatgctgataagatatctgatgggttttacaacatattaggaatgaatccatatttgtgggttatgtgtaatgccacagaggatggtaaacaaataccatctctaatggcattaaaaggaattgaacccagtgagacatcaatggaggttgttcttattgataggcgtggggattcaatgctcagggaattagaagataaagctcaagaaatttactttgctgctgacaatacgttagtcttggcagaaaaccttggcaagcttgtggctgtctatatggggggctcttttccggtggaacaaggtgatcttcatcagcggtggaaagctgttagcaagagattacaagatctgcagaagtgcattgtgctaccaattggcagtttctcctcaggactttgcaggcacagagctattctgttcaagaaattggcagattacgtaggtttgccttgtaggatagctcgaggttgcaagtattgtgtcgcagatcaccggtcttcttgtctggtaataattgaggacgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="94542" stop="97177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94840" g_stop="95095" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95096" i_stop="95436" i_length="341">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95437" g_stop="95735" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="555" r_length="299" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95736" i_stop="95818" i_length="83">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95819" g_stop="95963" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="700" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95964" i_stop="96772" i_length="809">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96773" g_stop="96877" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="805" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E705134" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94840" e_stop="95095"/>
          <exon e_start="95437" e_stop="95735"/>
          <exon e_start="95819" e_stop="95963"/>
          <exon e_start="96773" e_stop="96877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGACACGCAGACGTCGACGACAAGGGAAGTGGAGGAGGAAGTGGTGGGGCAGGATGCGGAGGAGAGAGTTGATAACGAAGATACATTGATACAGAAGTCGAAGGAGAGCTATTACTTGCAGCTGACGCTCGCTAAAAAGCTTGTAGAGCAAGCAATGCTTGCTTCTGGAGAGCCTATTCTTCTGCAGGAGTGCAAAAATATCAAGGGCCTTGGTGGATCTTCTGATGCTCAAACTGTATCTTATCGTTTATGGGTATATATACCTCTTTCTTTTCCTCCCTCTTCCTCTCTCTTTCGCACACACTCTATAGTGCTGCGGGGAAATGCATGTCTTTTTTCCTTCCAAAATTGGGAGTAGCGGAAATGGAGAAGGGGATTATATGGTGGTAATCGAACCCTCACCGATTAGATAAATATTCAGGTAGCCAATAGCCAATCAATTGAGCTACTTATATTTCACCGGAAGAACATGTCTGGTAGTTATTCTTATGGGGAGAATAATTCTGTTTCCTATTAGTTTAGCTGTAAGTATTTATCATTTATTCCTGTGGGTTCTTAATTATTTGACGGTGAAGTTTGCGAAAAAAATTTCAGGTGAGTGGTTCGTTGTCTTATGCTGATAAGATTTCTGATGGGTTTTACAACATATTAGGAATGAATCCATATTTGTGGGTTATGTGTAATGCCACAGAGGATGGTAAACAAATACCATCTCTAATGGCATTAAAAGGGATTGAACCCAGTGAGACATCAATGGAGGTTGTTCTTATTGATAGGCGTGGGGATTCAATGCTCAGGGAATTAGAAGATAAAGCTCAAGAAATTTACTTTGCTGCTGAGAATACATTAGTCTTGGCAGAAAACCTTGGCAAGCTTGTCGCTGTCTATATGGGGTGGGTTTATTGATTTTCTTTCGAAGTATGCTCTTTTGGACTTCATATTCTTGTGTGTGATATTGGTTTCCTTGAAATTTAAGGGGCTCTTTTCCGGTGGAACAAGGTGATCTTCATCAGCGGTGGCAAGCTGTTAGCAAGAGATTACAAGATCTGCAGAAGTGCATTGTGCTACCAATTGGCAGTTTCTCCTCAGGACTTTGCAGGCATAGAGCTATTCTGTTCAAGGTTAGTGAGAGACTTCTTTTTCATATGTTTGAACTTCGAAGCCTCAATCGTCTTTTTGACATTCTTTGCAATTAGATCCATGTAGAAATTGCTTCTCCTCCCCCTCTCCTGGTGCTTTTCATAAGTTCCACTTTAGCTGCACATTGACTGGTATAGTAGGAGAAAAACAAGTAAGTCTTCGATCCGAAACCTGAGAAGTAATTTGCTGCGAATCAGATGAAATATTTTCCTAATTAGGGTCAAATGAATTGTGCTAAGTGACTGGAAAGAAGCTAGTTATAGTGCAATATTGACTATGCCATACAAGAAGTGTTTCAAGTTTGTGAGTAGACAGTGATCAACTGCCCCTTTTTGATGAATTTGTCAGTGTGTTAGCTTCCTCAGTGCTGCAATCGGACTTGAGAAGTTATGTACTTGATTATGAACTCGGTATGGTGTTCGATAAAGGGGCATATTGATTGTCAGTTTTACCCAGGTTGTTTTCATAACTTTTGAGCGGCTTAACAAAAAAGTTTCTGCTTGACACTCACCATAGGCAATTAAAAGTTATTGCATAAAAAAATCACCCTTGAAAGTAGCTTGTGAAGAAATAATCATAATGGATCTTATCCAGTAATGAATGTGAAATTAAGGCTCACTTATTCTAGTTGAAATAATATCTTTTCCCCGTGTAATTGTTTAGTGGGTAGGCTGGCAGGGTGAGATAGAGTTCTGACTTGCTCTCTCATTTTACCATTCTTGTAATTAGTTGATTATTGAAAGGAAGGTTTTCGAAGACTGAATTTAACTGGTGATTTTATGATATACAGAAATTGGCAGATTACGTAGGTTTGCCTTGTAGGATAGCTCGAGGTTGCAAGTATTGTGTCGCAGATCACCGGTCTTCTTGTCTGGTAATAATTGAGGACGACAGA</genome_strand>
        <mrna_strand>CTATGACACGCAGACGTCGACGACAAGGGAAGTGGAGGAGGAAGTGGTGGTGCAGGATGCGGAGGAGAGAGTTGATAACGAAGATACATTGATACAGAAGTCGAAGGAGAGCTATTACCTGCAGCTGACGCTCGCTAAAAAGCTTGTAGAGCAAGCAATGCTTACTTCTGGAGAGCCTATTCTTCTGCAGGAGTGCAAAAATATCAAGGGCCTTGGTGGATCTTCTGATGCTCAAACTGTATCTTATCGTTTATGG.....................................................................................................................................................................................................................................................................................................................................................GTGAGTGGTTCGTTGTCTTATGCTGATAAGATATCTGATGGGTTTTACAACATATTAGGAATGAATCCATATTTGTGGGTTATGTGTAATGCCACAGAGGATGGTAAACAAATACCATCTCTAATGGCATTAAAAGGAATTGAACCCAGTGAGACATCAATGGAGGTTGTTCTTATTGATAGGCGTGGGGATTCAATGCTCAGGGAATTAGAAGATAAAGCTCAAGAAATTTACTTTGCTGCTGACAATACGTTAGTCTTGGCAGAAAACCTTGGCAAGCTTGTGGCTGTCTATATGGG...................................................................................GGGCTCTTTTCCGGTGGAACAAGGTGATCTTCATCAGCGGTGGAAAGCTGTTAGCAAGAGATTACAAGATCTGCAGAAGTGCATTGTGCTACCAATTGGCAGTTTCTCCTCAGGACTTTGCAGGCACAGAGCTATTCTGTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCAGATTACGTAGGTTTGCCTTGTAGGATAGCTCGAGGTTGCAAGTATTGTGTCGCAGATCACCGGTCTTCTTGTCTGGTAATAATTGAGGACGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702652" ref_strand="+" ref_description="SGN-E702652 [FA19BC08]">
      <seq>agcaagcaatgcttacttctggagagcctattcttctgcaggagtgcaaaaatatcaagggccttggtggatcttctgatgctcaaactgtatcttatcgtttatgggtgagtggttcgttgtcttatgctgataagatatctgatgggttttacaacatattaggaatgaatccatatttgtgggttatgtgtaatgccacagaggatggtaaacaaataccatctctaatggcattaaaaggaattgaacccagtgagacatcaatggaggttgttcttattgataggcgtggggattcaatgctcagggaattagaagataaagctcaagaaatttactttgctgctgacaatacgttagtcttggcagaaaaccttggcaagcttgtggctgtctatatggggggctcttttccggtggaacaaggtgatcttcatcagcggtggaaagctgttagcaagagattacaagatctgcagaagtgcattgtgctaccaattggcagtttctcctcaggactttgcaggcacagagctattctgttcaagaaattggcagattacgtaggtttgccttgtaggatagctcgaggttgcaagtattgtgtcgcagatcaccggtcttcttgtctggtaataattgaggacgacagaagattgtcaaggtaaaacatcttatccactatctcttcaatcaaagtagttatctcctctaaccatcaacaagtgttttctccttagcggttttggtttatgtttcaaatgtatctccaacattttaatctgatataatgtttgagacctcattattggttacttcgtacttgacatttctttcagactttaattgtgctttcatgagtatttaataagattaaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="94689" stop="97413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94989" g_stop="95095" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95096" i_stop="95436" i_length="341">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95437" g_stop="95735" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="406" r_length="299" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95736" i_stop="95818" i_length="83">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95819" g_stop="95963" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="551" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95964" i_stop="96772" i_length="809">
            <donor d_prob="0.974" d_score="0.98"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96773" g_stop="97113" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="884" r_length="333" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E702652" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94989" e_stop="95095"/>
          <exon e_start="95437" e_stop="95735"/>
          <exon e_start="95819" e_stop="95963"/>
          <exon e_start="96773" e_stop="97113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGCAATGCTTGCTTCTGGAGAGCCTATTCTTCTGCAGGAGTGCAAAAATATCAAGGGCCTTGGTGGATCTTCTGATGCTCAAACTGTATCTTATCGTTTATGGGTATATATACCTCTTTCTTTTCCTCCCTCTTCCTCTCTCTTTCGCACACACTCTATAGTGCTGCGGGGAAATGCATGTCTTTTTTCCTTCCAAAATTGGGAGTAGCGGAAATGGAGAAGGGGATTATATGGTGGTAATCGAACCCTCACCGATTAGATAAATATTCAGGTAGCCAATAGCCAATCAATTGAGCTACTTATATTTCACCGGAAGAACATGTCTGGTAGTTATTCTTATGGGGAGAATAATTCTGTTTCCTATTAGTTTAGCTGTAAGTATTTATCATTTATTCCTGTGGGTTCTTAATTATTTGACGGTGAAGTTTGCGAAAAAAATTTCAGGTGAGTGGTTCGTTGTCTTATGCTGATAAGATTTCTGATGGGTTTTACAACATATTAGGAATGAATCCATATTTGTGGGTTATGTGTAATGCCACAGAGGATGGTAAACAAATACCATCTCTAATGGCATTAAAAGGGATTGAACCCAGTGAGACATCAATGGAGGTTGTTCTTATTGATAGGCGTGGGGATTCAATGCTCAGGGAATTAGAAGATAAAGCTCAAGAAATTTACTTTGCTGCTGAGAATACATTAGTCTTGGCAGAAAACCTTGGCAAGCTTGTCGCTGTCTATATGGGGTGGGTTTATTGATTTTCTTTCGAAGTATGCTCTTTTGGACTTCATATTCTTGTGTGTGATATTGGTTTCCTTGAAATTTAAGGGGCTCTTTTCCGGTGGAACAAGGTGATCTTCATCAGCGGTGGCAAGCTGTTAGCAAGAGATTACAAGATCTGCAGAAGTGCATTGTGCTACCAATTGGCAGTTTCTCCTCAGGACTTTGCAGGCATAGAGCTATTCTGTTCAAGGTTAGTGAGAGACTTCTTTTTCATATGTTTGAACTTCGAAGCCTCAATCGTCTTTTTGACATTCTTTGCAATTAGATCCATGTAGAAATTGCTTCTCCTCCCCCTCTCCTGGTGCTTTTCATAAGTTCCACTTTAGCTGCACATTGACTGGTATAGTAGGAGAAAAACAAGTAAGTCTTCGATCCGAAACCTGAGAAGTAATTTGCTGCGAATCAGATGAAATATTTTCCTAATTAGGGTCAAATGAATTGTGCTAAGTGACTGGAAAGAAGCTAGTTATAGTGCAATATTGACTATGCCATACAAGAAGTGTTTCAAGTTTGTGAGTAGACAGTGATCAACTGCCCCTTTTTGATGAATTTGTCAGTGTGTTAGCTTCCTCAGTGCTGCAATCGGACTTGAGAAGTTATGTACTTGATTATGAACTCGGTATGGTGTTCGATAAAGGGGCATATTGATTGTCAGTTTTACCCAGGTTGTTTTCATAACTTTTGAGCGGCTTAACAAAAAAGTTTCTGCTTGACACTCACCATAGGCAATTAAAAGTTATTGCATAAAAAAATCACCCTTGAAAGTAGCTTGTGAAGAAATAATCATAATGGATCTTATCCAGTAATGAATGTGAAATTAAGGCTCACTTATTCTAGTTGAAATAATATCTTTTCCCCGTGTAATTGTTTAGTGGGTAGGCTGGCAGGGTGAGATAGAGTTCTGACTTGCTCTCTCATTTTACCATTCTTGTAATTAGTTGATTATTGAAAGGAAGGTTTTCGAAGACTGAATTTAACTGGTGATTTTATGATATACAGAAATTGGCAGATTACGTAGGTTTGCCTTGTAGGATAGCTCGAGGTTGCAAGTATTGTGTCGCAGATCACCGGTCTTCTTGTCTGGTAATAATTGAGGACGACAGAAGATTGTCAAGGTAAAACATCTTATCCACTATCTCTTCAATCAAAGTAGTTATCTCCTCTAAGGCTCTAACCATCAACAAGTATTTTCTCCTTAGCGGTTTTGGTTTATGTTTCAAATGTATCTCCAATATTTTAATCTGATATAATATTTGAGACCTCATTATTGGTTACTTCGTACTTGACATTTCTTTCAGACTTTAATTGTGATTTCATGAGTATTTAATAAGATTAAAGTA</genome_strand>
        <mrna_strand>AGCAAGCAATGCTTACTTCTGGAGAGCCTATTCTTCTGCAGGAGTGCAAAAATATCAAGGGCCTTGGTGGATCTTCTGATGCTCAAACTGTATCTTATCGTTTATGG.....................................................................................................................................................................................................................................................................................................................................................GTGAGTGGTTCGTTGTCTTATGCTGATAAGATATCTGATGGGTTTTACAACATATTAGGAATGAATCCATATTTGTGGGTTATGTGTAATGCCACAGAGGATGGTAAACAAATACCATCTCTAATGGCATTAAAAGGAATTGAACCCAGTGAGACATCAATGGAGGTTGTTCTTATTGATAGGCGTGGGGATTCAATGCTCAGGGAATTAGAAGATAAAGCTCAAGAAATTTACTTTGCTGCTGACAATACGTTAGTCTTGGCAGAAAACCTTGGCAAGCTTGTGGCTGTCTATATGGG...................................................................................GGGCTCTTTTCCGGTGGAACAAGGTGATCTTCATCAGCGGTGGAAAGCTGTTAGCAAGAGATTACAAGATCTGCAGAAGTGCATTGTGCTACCAATTGGCAGTTTCTCCTCAGGACTTTGCAGGCACAGAGCTATTCTGTTCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCAGATTACGTAGGTTTGCCTTGTAGGATAGCTCGAGGTTGCAAGTATTGTGTCGCAGATCACCGGTCTTCTTGTCTGGTAATAATTGAGGACGACAGAAGATTGTCAAGGTAAAACATCTTATCCACTATCTCTTCAATCAAAGTAGTTA--T-CTC-----CTCTAACCATCAACAAGTGTTTTCTCCTTAGCGGTTTTGGTTTATGTTTCAAATGTATCTCCAACATTTTAATCTGATATAATGTTTGAGACCTCATTATTGGTTACTTCGTACTTGACATTTCTTTCAGACTTTAATTGTGCTTTCATGAGTATTTAATAAGATTAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E379187" ref_strand="+" ref_description="SGN-E379187 [TUS-3-G17]">
      <seq>tggtccagattcctctatcaatggaggtgtattgtctcgtgtgccttctccacttcaagtatctcatttgacagagtttcaacaaccttatatggatagtgacataagtaatcagttactgcattcaaatgacacatttgctgctccagaaaatgctttgcatacagacccccatgttgagagtaaacatgtgaagggaattgttgtcagtgataagccaaaatttccaaatgatccactttaccaaccttatcaagctttggaagctaagccatgtgaagttcttgttgcggctgaaacagcaggagatgagaattctagacctagagaagacaaaattattatcaggcagacttacaagaaggaggttgttctgtccaaaaattcaccattgcaatctggcagaccgccaaaatctactttaataggcaaaatggatgtaatggagcctggaggtagaactgggaaccgtgagaaacatccgacaacaacaaatccaagatatctgcatcttgaaccttttcttgcaatggactggcttgagatctcatgggatgaattacatataaaagagcgtgtaggagctggttcatttggaacagtacatcgtgctgaatggaatggatcggatgttgcagtcaagctgcttactgtccaggattttcatgatgatcagttgaaggagtttttaagggaggttgcaatcatgaaacgcgtccgtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="97019" stop="99763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97319" g_stop="97485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97486" i_stop="97804" i_length="319">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97805" g_stop="98224" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="587" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98225" i_stop="98328" i_length="104">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98329" g_stop="98369" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="628" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98370" i_stop="98880" i_length="511">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98881" g_stop="98949" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="697" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98950" i_stop="99436" i_length="487">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99437" g_stop="99463" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="724" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E379187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97319" e_stop="97485"/>
          <exon e_start="97805" e_stop="98224"/>
          <exon e_start="98329" e_stop="98369"/>
          <exon e_start="98881" e_stop="98949"/>
          <exon e_start="99437" e_stop="99463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCAGATTCCTCTATCAATGGAGGTGTATTGTCTCGTGTGCCTTCACCACTTCAAGTATCTCATTTGACAGAGTTTCAACAACCTTATATGGATAGTGACATAAGTAATCAGTTACTGCATTCAAATGACACATTTGCTGCTCCAGAAAATGCTTTGCATACAGGTGTGCTATTATTTAATTGGTGCCTATTGATAGAAGAAAAGGGATGTCGCTGGTTGAACGTGAAGTTGTTTATATAACAGAAATGATAAGATGATTGGCCTTCTCATATGGATCACTATATATGTTTATCTCTATTACAAAGTAGTCTGATTGCAGCACAGGAATAAGCTCATGTGGAAGTTTTCTTCTGGACTTCATAGAAAGAGCTTGTTTTATGCATTTATTTAATTGTTAGAATCAGCAGTTGGGTAATTTTTGAAATTCAGAATCTTCATTGTCACTATTAGAGTGAATAAATTTGCAATTTCTTCTCTTGCAGACCCCCATGTTGAGAGTAAACATGTGAAGGGAATTGTTGTCAGTGATAAGCCAAAATTTCCAAATGATCCACTTTACCAACCTTATCAAGCTTTGGAAGCTAAGCCATGTGAAGTTCTTGTTGCGGCTGAAACAGCAGGAGATGAGAATTCTAGACCTAGAGAAGACAAAATTATTATCAGGCAGACTTACAAGAAGGAGGTTGTTCTGTCCAAAAATTCACCATTGCAATCTGGCAGACCGCCAAAATCTACTTTAATAGGCAAAATGGATGTAATGGAGCCTGGAGGTAGAACTGGGAACCGTGAGAAACATCCGACAACAACAAATCCAAGATATCTGCATCTTGAACCTTTTCTTGCAATGGACTGGCTTGAGATCTCATGGGATGAATTACATATAAAAGAGCGTGTAGGAGCTGGTGCGTGTTTGTCAATAAATATGAACTGGCTGTAAATTAATCCTCAGTTATTGAATCCTGTTTGACATCAGTGTATCTTGATGTACTACTCTTCTTTCATGCAGGTTCATTTGGAACAGTACATCGTGCTGAATGGAATGGATCGGTGAGTGTTATTTATTTTGTGTTGTCGCAATAGTAATCATGATGATAATTTAGAAGATTAGAAGATTCTGTTCAAACCTAAAAAATATAATAATCATTTTGCATGTTTGTACCTGTATTGACTGCATTACTTATCAAAGGTGTAGGGATGATGTTGTGTCAATTGTTGAGGCAATTATGTAAATCACATTGAAATAAGACATTTGTATAACTCCATCTCAATAGAATTGTAATGTTCAGATCATTGCTTGATGATGCTAGTGGTATCTCATTATTGACTAAACTTCGCCGTATGAGGTAGTCCAATTTGCTCTTACTTTGTGTTTCTAGATTAGACATTTCCTCTTAGCTTGAATGTATTACTAGGGGGAAAAAGGATTGGCAACACATGCATGAAGTTGAAGTTCCATATATTTTTAAAAGATGCTTTGTGGAAACTATTTTTAGTATCGGAAATAGTGTGTGCCTTCTTTTTTTTCCGGACTGATCGAGTATGGAACTAATAACTGCAGGATGTTGCAGTCAAGCTGCTTACTGTCCAGGATTTTCATGATGATCAGTTGAAGGAGTTTTTAAGGGAGGTGAGTGCATATAATTATTGGTGGAACTGTTGTATGCTAGCTACAATAAAAAGTTTTAGGTTTCTGATAAAGATAAGACTACTTTCTACAGCTGATCCTTCTCTGCTTTTTCTTGTTTCCCCTCTATGACGAGGGCAAGCACAAAAGGCATAACTACAGAAAGAAATAGTGCTTTTGCTTTTTGTTTAGTTTAATCTAATACACAGCATCTGACCAAACTATTGGGATTGAGATATAATCGTAGTTGTTGTAATTTAATTGGCATTTCGCAATCTAGTCTCAATTTGTTGTGAATTGCGTTTATATATATGCTTGTAATATTCTGAAATCTAGTTCATGGATTTGTAAAAAGATGGTTCCCTGTATTGAATAGAGTGATCCTGCATTCTTTCACCTTCTCCTTTGTTTCATTTTTATTTTCATTTTATTTACATTCTTGTATTGGTATCTATCATTGGATGGTAGCTCAGTATTCATGTTTCTGAAGGTTGCAATCATGAAACGCGTCCGTCAT</genome_strand>
        <mrna_strand>TGGTCCAGATTCCTCTATCAATGGAGGTGTATTGTCTCGTGTGCCTTCTCCACTTCAAGTATCTCATTTGACAGAGTTTCAACAACCTTATATGGATAGTGACATAAGTAATCAGTTACTGCATTCAAATGACACATTTGCTGCTCCAGAAAATGCTTTGCATACAG...............................................................................................................................................................................................................................................................................................................................ACCCCCATGTTGAGAGTAAACATGTGAAGGGAATTGTTGTCAGTGATAAGCCAAAATTTCCAAATGATCCACTTTACCAACCTTATCAAGCTTTGGAAGCTAAGCCATGTGAAGTTCTTGTTGCGGCTGAAACAGCAGGAGATGAGAATTCTAGACCTAGAGAAGACAAAATTATTATCAGGCAGACTTACAAGAAGGAGGTTGTTCTGTCCAAAAATTCACCATTGCAATCTGGCAGACCGCCAAAATCTACTTTAATAGGCAAAATGGATGTAATGGAGCCTGGAGGTAGAACTGGGAACCGTGAGAAACATCCGACAACAACAAATCCAAGATATCTGCATCTTGAACCTTTTCTTGCAATGGACTGGCTTGAGATCTCATGGGATGAATTACATATAAAAGAGCGTGTAGGAGCTG........................................................................................................GTTCATTTGGAACAGTACATCGTGCTGAATGGAATGGATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTTGCAGTCAAGCTGCTTACTGTCCAGGATTTTCATGATGATCAGTTGAAGGAGTTTTTAAGGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAATCATGAAACGCGTCCGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206805" ref_strand="+" ref_description="SGN-E206805 [cLEC-33-C3]">
      <seq>tggtccagattcctctatcaatggaggtgtattgtctcgtgtgccttcaccacttcaagtatctcatttgacagagtttcaacaaccttatatggatagtgacataagtaatcagttactgcattcaaatgacacatttgctgctccagaaaatgctttgcatacagacccccatgttgagagtaaacatgtgaagggaattgttgtcagtgataagccaaaatttccaaatgatccactttaccaaccttatcaagctttggaagctaagccatgtgaagttcttgttgcggctgaaacagcaggagatgagaattctagacctagagaagacaaaattattatcaggcagacttacaagaaggaggttgttctgtccaaaaattcaccattgcaatctggcagaccgccaaaatctactttaataggcaaaatggatgtaatggagcctggaggtagaactgggaaccgtgagaaacatccgacaacaacaaatccaagatatctgcatcttgaaccttttcttgcaatggactggcttgagatctcatgggatgaattacatataaaagagcgtgtaggagctggttcatttggaacagtacatcgtgctgaatggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="97019" stop="98663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97319" g_stop="97485" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97486" i_stop="97804" i_length="319">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97805" g_stop="98224" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="587" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98225" i_stop="98328" i_length="104">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98329" g_stop="98363" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="622" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E206805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97319" e_stop="97485"/>
          <exon e_start="97805" e_stop="98224"/>
          <exon e_start="98329" e_stop="98363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCCAGATTCCTCTATCAATGGAGGTGTATTGTCTCGTGTGCCTTCACCACTTCAAGTATCTCATTTGACAGAGTTTCAACAACCTTATATGGATAGTGACATAAGTAATCAGTTACTGCATTCAAATGACACATTTGCTGCTCCAGAAAATGCTTTGCATACAGGTGTGCTATTATTTAATTGGTGCCTATTGATAGAAGAAAAGGGATGTCGCTGGTTGAACGTGAAGTTGTTTATATAACAGAAATGATAAGATGATTGGCCTTCTCATATGGATCACTATATATGTTTATCTCTATTACAAAGTAGTCTGATTGCAGCACAGGAATAAGCTCATGTGGAAGTTTTCTTCTGGACTTCATAGAAAGAGCTTGTTTTATGCATTTATTTAATTGTTAGAATCAGCAGTTGGGTAATTTTTGAAATTCAGAATCTTCATTGTCACTATTAGAGTGAATAAATTTGCAATTTCTTCTCTTGCAGACCCCCATGTTGAGAGTAAACATGTGAAGGGAATTGTTGTCAGTGATAAGCCAAAATTTCCAAATGATCCACTTTACCAACCTTATCAAGCTTTGGAAGCTAAGCCATGTGAAGTTCTTGTTGCGGCTGAAACAGCAGGAGATGAGAATTCTAGACCTAGAGAAGACAAAATTATTATCAGGCAGACTTACAAGAAGGAGGTTGTTCTGTCCAAAAATTCACCATTGCAATCTGGCAGACCGCCAAAATCTACTTTAATAGGCAAAATGGATGTAATGGAGCCTGGAGGTAGAACTGGGAACCGTGAGAAACATCCGACAACAACAAATCCAAGATATCTGCATCTTGAACCTTTTCTTGCAATGGACTGGCTTGAGATCTCATGGGATGAATTACATATAAAAGAGCGTGTAGGAGCTGGTGCGTGTTTGTCAATAAATATGAACTGGCTGTAAATTAATCCTCAGTTATTGAATCCTGTTTGACATCAGTGTATCTTGATGTACTACTCTTCTTTCATGCAGGTTCATTTGGAACAGTACATCGTGCTGAATGGAAT</genome_strand>
        <mrna_strand>TGGTCCAGATTCCTCTATCAATGGAGGTGTATTGTCTCGTGTGCCTTCACCACTTCAAGTATCTCATTTGACAGAGTTTCAACAACCTTATATGGATAGTGACATAAGTAATCAGTTACTGCATTCAAATGACACATTTGCTGCTCCAGAAAATGCTTTGCATACAG...............................................................................................................................................................................................................................................................................................................................ACCCCCATGTTGAGAGTAAACATGTGAAGGGAATTGTTGTCAGTGATAAGCCAAAATTTCCAAATGATCCACTTTACCAACCTTATCAAGCTTTGGAAGCTAAGCCATGTGAAGTTCTTGTTGCGGCTGAAACAGCAGGAGATGAGAATTCTAGACCTAGAGAAGACAAAATTATTATCAGGCAGACTTACAAGAAGGAGGTTGTTCTGTCCAAAAATTCACCATTGCAATCTGGCAGACCGCCAAAATCTACTTTAATAGGCAAAATGGATGTAATGGAGCCTGGAGGTAGAACTGGGAACCGTGAGAAACATCCGACAACAACAAATCCAAGATATCTGCATCTTGAACCTTTTCTTGCAATGGACTGGCTTGAGATCTCATGGGATGAATTACATATAAAAGAGCGTGTAGGAGCTG........................................................................................................GTTCATTTGGAACAGTACATCGTGCTGAATGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378875" ref_strand="+" ref_description="SGN-E378875 [TUS-3-G17](-)">
      <seq>tacgttcatatcatcaaaatcagttgctggaactcctgaatggatggcccccgaatttctccgtggagaaccctcaaatgagaagtctgatgtctatagctttggtgtaatattatgggagcttgtcaccatgcaacagccttggaatggactgagccctgcgcaggtagttggtgctgtagctttccagaacaggaggctcactgttccacagaacacttctccaatgttggcgtctctaatggaagcctgctggaatgatgacccggtacaacgcccatccttcgctagcattgtggatacattaaagaaactactcaagtctccactacagttgattcagatgggaggaacaatgaagagttaagatactctctccacttatctaggagaagaataaattcatcatagttcgaagatacatagtttacgtaacgctgacgaaatccggtaaaacttagcccaacaactgcaaatatgttggctctcttcaactttttgaatgataacaagcctctgttagttccagttatagataaagaggcatttctaaagctgtttaatttcttgcaagaaactactctaaaactttgtcaacaacaaatgtgaaattataattatgtagtagtatttggagaagtatttattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="99707" stop="102527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100007" g_stop="100040" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100041" i_stop="101379" i_length="1339">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101380" g_stop="101511" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="166" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101512" i_stop="101609" i_length="98">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101610" g_stop="101704" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="261" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101705" i_stop="101837" i_length="133">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101838" g_stop="102227" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="651" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E378875" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100007" e_stop="100040"/>
          <exon e_start="101380" e_stop="101511"/>
          <exon e_start="101610" e_stop="101704"/>
          <exon e_start="101838" e_stop="102227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTTCATATCATCAAAATCAGTTGCTGGAACTGTAAGTACCTCCTAACACAAACAAACTATCTTTAATATGCAAGAAAAAGTTGCATATGTATCTTGTGCCAAATAATAATGAGCAAGGAAATAGTTGCGCCGAGATGCTTGTCCTTCACCTTGCCGTAGACATTTAGAATGAGCAGCTAATTTGTGTGAACTCTTCACTTCTGGTGCTGCACGTGTGTCGGCATGACATGGGTGTGGTATCCATAATGATATGGTCAATGGATTTTGGGTACTTTCGACCAAAATCAACCGAGAATTCGAGACAGAGACAATCTTGGCATATGTTCTTTTATCTTTAAAAGATATTTGTGCTAAAAAAGCCCGTAATAAGAAGGTTCTCTAAAGATATTTACAGGCTTGATACCATTGAGTGTCCAATGAACTCAACAAGTCTATCATGGCCTCTATATCGTTTGCAATAGTCACACGTTACACCAAAAAACAGTAAAGAGATGCATCTGTACTTAATAATAATTACATATTTAAACTTGATCTCAAAAATCCGTGCATTCCTTTCCTTCTAGATAGTCGTCCATGATTTAAGAATTTTTTAATTACTATATCTTAGAAAATTGAATTATTTTTAGCTGAAACCGTGTACCTGTATCCTTTCTTGTATCCATACTCCTGAATCTTTAAATTTATTTCGTGGAGGATCAGATCTCTAGGTCTGTACCCAAATTGGTCACCTGCGTCCGAGTTTGAGCAACTAGAGAATTATGAGCTGCTTGGCTCCATTTACTGATCTTAGATGCTAAGTCTTTTAGCCATTAAGGTTACAAAAACATGCGAATTGAATACTGTAGGGCCTCTGATACAGGCAGTTATTGTTTTTTTGCCATGATAATTTCTAGATTACAATCATTTCTTTCTATCACATTTACATTTTAGCCAGGTTCTGATATGGAAAACCGCGTCTTATTATCTATTAGTAGAAGTTCTGATGTAGACAAAACACGTTCTTCTGTGAAAATCGGCTAGCAAAGTATATGAAGAGTATGCATATAGTTAAGAATTTTACAGAGCTTCTTGTCTCTTGGTTTCTTAAGTAGGTGCTATCTCTGATATTTCCTTTTGCATTGCCTTCTTTAATTTTCAGAATCCTCTTTTCCCCATTAATAGGAAATATTGCTCTAATTGCTTTCAATAGTCAGTGAAATGCAATTGCTCTAATGTTTGCGCCTGCTACTCGATAAACATATCTGTCATCGACAATGTACCTACTCCCATTGCAGTACAAAGACATCTTTTTTGAACTCTACATTTTGCAGGTTGTGCAATTTTTTGTACGTCTTTCAATAGGCCTGTAACTCTCTTGCTTTTTGTTTCAGCCTGAATGGATGGCCCCCGAATTTCTCCGTGGAGAACCCTCAAATGAGAAGTCTGATGTCTATAGCTTTGGTGTAATATTATGGGAGCTTGTCACCATGCAACAGCCTTGGAATGGACTGAGCCCTGCGCAGGTTTACTTCTTCCCTGCTGCACCCCACACCTCATATTTCTCCCGGACTTAAATATCAAAAAACACGATGTATTTGACGTGTTATTTGTGAGCTTTCAGGTAGTTGGTGCTGTAGCTTTCCAGAACAGGAGGCTCACTGTTCCACAGAACACTTCTCCAATGTTGGCGTCTCTAATGGAAGCCTGCTGGAATGAGTAAGTAGACATCCGCATCCTGTTTTTTTCCATCTCGATCTCTACTAGTCAACTTGTGTTGTCGATTATGTCAAAGAATTCTCTACCTCTTCTCTCTATTTTCGTCAGTTAATACTTCCACGTTTTCTCTCAGTGACCCGGTACAACGCCCATCCTTCGCTAGCATTGTGGATACATTAAAGAAACTACTCAAGTCTCCACTACAGTTGATTCAGATGGGAGGAACAATGAAGAGTTAAGATACTCTCTCCACTTATCTAGGAGAAGAATAAATTCATCATAGTTCGAAGATACATAGTTTACGTAACGCTGACGAAATCCGGTAAAACTTTGCCCAACAACTGCAAATATGTTGGCTCTCTTCAACTTTTTGAATGATAACAAGCCTCTGTTAGTTCCAGTTATAGATAAAGAGGCATTTCTAAAGCTGTTTAATTTCTTGCAAGAAACTACTCTAAAACTTTGTCAACAACAAATGTGAAATTATAATTATGTAGTAGTATTTGGAGAAGTATTTATTCCC</genome_strand>
        <mrna_strand>TACGTTCATATCATCAAAATCAGTTGCTGGAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGAATGGATGGCCCCCGAATTTCTCCGTGGAGAACCCTCAAATGAGAAGTCTGATGTCTATAGCTTTGGTGTAATATTATGGGAGCTTGTCACCATGCAACAGCCTTGGAATGGACTGAGCCCTGCGCAG..................................................................................................GTAGTTGGTGCTGTAGCTTTCCAGAACAGGAGGCTCACTGTTCCACAGAACACTTCTCCAATGTTGGCGTCTCTAATGGAAGCCTGCTGGAATGA.....................................................................................................................................TGACCCGGTACAACGCCCATCCTTCGCTAGCATTGTGGATACATTAAAGAAACTACTCAAGTCTCCACTACAGTTGATTCAGATGGGAGGAACAATGAAGAGTTAAGATACTCTCTCCACTTATCTAGGAGAAGAATAAATTCATCATAGTTCGAAGATACATAGTTTACGTAACGCTGACGAAATCCGGTAAAACTTAGCCCAACAACTGCAAATATGTTGGCTCTCTTCAACTTTTTGAATGATAACAAGCCTCTGTTAGTTCCAGTTATAGATAAAGAGGCATTTCTAAAGCTGTTTAATTTCTTGCAAGAAACTACTCTAAAACTTTGTCAACAACAAATGTGAAATTATAATTATGTAGTAGTATTTGGAGAAGTATTTATTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E314758" ref_strand="+" ref_description="SGN-E314758 [cTOA-20-K20]">
      <seq>cgtggagaaccctcaaatgagaagtctgatgtctatagctttggtgtaatattatgggagcttgtcaccatgcaacagccttggaatggactgagccctgcgcaggtagttggtgctgtagctttccagaacaggaggctcactgttccacagaacacttctccaatgttggcgtctctaatggaagcctgctggaatgatgacccggtacaacgcccatccttcgctagcattgtggatacattaaagaaactactcaagtctccactacagttgattcagatgggaggaacaatgaagagttaagatactctctccacttatctaggagaagaataaattcatcatagttcgaagatacatagtttacgtaacgctgacgaaatccggtaaaacttagcccaacaactgcaaatatgttggctctcttcaactttttgaatgataacaagcctctgttagttccagttatagataaagaggcatttctaaagctgtttaatttcttgcaagaaactactctaaaactttgtcaacaacaaatgtgaaattataattatgtagtagtatttggagaagtatttattccctgtagaagtctaagattatgtagcatccggggaagtctttattctaattgcagncataaatatatagaaaaggtcagttatttatggtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="101107" stop="102620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101407" g_stop="101511" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="101512" i_stop="101609" i_length="98">
            <donor d_prob="0.727" d_score="1.00"/>
            <acceptor a_prob="0.794" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101610" g_stop="101704" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="200" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101705" i_stop="101837" i_length="133">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101838" g_stop="102320" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="683" r_length="483" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E314758" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101407" e_stop="101511"/>
          <exon e_start="101610" e_stop="101704"/>
          <exon e_start="101838" e_stop="102320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGAGAACCCTCAAATGAGAAGTCTGATGTCTATAGCTTTGGTGTAATATTATGGGAGCTTGTCACCATGCAACAGCCTTGGAATGGACTGAGCCCTGCGCAGGTTTACTTCTTCCCTGCTGCACCCCACACCTCATATTTCTCCCGGACTTAAATATCAAAAAACACGATGTATTTGACGTGTTATTTGTGAGCTTTCAGGTAGTTGGTGCTGTAGCTTTCCAGAACAGGAGGCTCACTGTTCCACAGAACACTTCTCCAATGTTGGCGTCTCTAATGGAAGCCTGCTGGAATGAGTAAGTAGACATCCGCATCCTGTTTTTTTCCATCTCGATCTCTACTAGTCAACTTGTGTTGTCGATTATGTCAAAGAATTCTCTACCTCTTCTCTCTATTTTCGTCAGTTAATACTTCCACGTTTTCTCTCAGTGACCCGGTACAACGCCCATCCTTCGCTAGCATTGTGGATACATTAAAGAAACTACTCAAGTCTCCACTACAGTTGATTCAGATGGGAGGAACAATGAAGAGTTAAGATACTCTCTCCACTTATCTAGGAGAAGAATAAATTCATCATAGTTCGAAGATACATAGTTTACGTAACGCTGACGAAATCCGGTAAAACTTTGCCCAACAACTGCAAATATGTTGGCTCTCTTCAACTTTTTGAATGATAACAAGCCTCTGTTAGTTCCAGTTATAGATAAAGAGGCATTTCTAAAGCTGTTTAATTTCTTGCAAGAAACTACTCTAAAACTTTGTCAACAACAAATGTGAAATTATAATTATGTAGTAGTATTTGGAGAAGTATTTATTCCCTGTAGAAGTCTAAGATTATGTAGCATCCGGGGAAGTCTTTATTCTAATTGCAGCAATAATAATATAGAAAATGTCAGTTATTTATGGTTTATC</genome_strand>
        <mrna_strand>CGTGGAGAACCCTCAAATGAGAAGTCTGATGTCTATAGCTTTGGTGTAATATTATGGGAGCTTGTCACCATGCAACAGCCTTGGAATGGACTGAGCCCTGCGCAG..................................................................................................GTAGTTGGTGCTGTAGCTTTCCAGAACAGGAGGCTCACTGTTCCACAGAACACTTCTCCAATGTTGGCGTCTCTAATGGAAGCCTGCTGGAATGA.....................................................................................................................................TGACCCGGTACAACGCCCATCCTTCGCTAGCATTGTGGATACATTAAAGAAACTACTCAAGTCTCCACTACAGTTGATTCAGATGGGAGGAACAATGAAGAGTTAAGATACTCTCTCCACTTATCTAGGAGAAGAATAAATTCATCATAGTTCGAAGATACATAGTTTACGTAACGCTGACGAAATCCGGTAAAACTTAGCCCAACAACTGCAAATATGTTGGCTCTCTTCAACTTTTTGAATGATAACAAGCCTCTGTTAGTTCCAGTTATAGATAAAGAGGCATTTCTAAAGCTGTTTAATTTCTTGCAAGAAACTACTCTAAAACTTTGTCAACAACAAATGTGAAATTATAATTATGTAGTAGTATTTGGAGAAGTATTTATTCCCTGTAGAAGTCTAAGATTATGTAGCATCCGGGGAAGTCTTTATTCTAATTGCAGNCATAAATATATAGAAAAGGTCAGTTATTTATGGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E687763" ref_strand="+" ref_description="SGN-E687763 [T3_tus_79_O09]">
      <seq>atcaaatcgaaaaattctcagagaaacccagaaaacgaaaatcgccatggattttttctccgataatcacatgtggcgtgatcttcttcttcaagcagtcttaattctcgtaacaatcttcatgttccttttcatgtacaacgttccccagaagtacttctcgaagcttcgtctccggaaccgggccgatatgcaatcgaagcgtcattttgttcaaggagctcaacttctttctcaagctaaatcagcagcagctaaggatcgatcgaagtctacttctcttgctaaatctgctgaagctcaagccgatttggctatagctttagacccgaaagatgctgcagctcacatactcaaggctttagctcttgatttacaggggtttaagacgtcggctcttgattccattgacgtcgcgctttcgccgctagccgtgaagtcgttgtcggagccggagaaagcggatgccttgtttaagcgggcgcagttgagactggctgcggaacaagttgactcggtgattgaggatttgagtcagtctgttaggttgaagggcgataatgtgaaggctttttgcttgttgggcgattgttacgagaaaaaaggcttgaaggaagaggcacgaaaggcttatcaggaagctcaaaaggttcagccaaattttgcgcctgctcgagaagcacttgaccgtttgaattccgagtcttgatctctaattgtttgtttcattttgttgttttgttcactacgtagttcaatataaaggcagttattattcacgctaaaattaaacatttggaaaatttatagttatatccttatatttatattaacaatgattaacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="103810" stop="105259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104110" g_stop="104966" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="857" r_length="857" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E687763" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104110" e_stop="104966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATCGAAAAATTCTCAGAGAAACCCAGAAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGCAGTTGAGACTGGCTGCGGAACAAGTTGACTCGGTGATTGAGGATTTGAGTCAGTCTGTTAGGTTGAAGGGCGATAATGTGAAGGCTTTTTGCTTGTTGGGCGATTGTTACGAGAAAAAAGGCTTGAAGGAAGAGGCAAGAAAGGCTTATCAGGAAGCTCAAAAGGTTCAGCCAAATTTTGCGCCTGCTCGAGAAGCACTTGACCGTTTGAATTCCGAGTCTTGATCTCTAATTGTTTGTTTCATTTTGTTGTTTTGTTCACTACGTAGTTCAATATAAAGGCAGTTATTATTCACGCTAAAATTAAACATTTGGAGAATTTATAGTTATATCCTTATATTTATATTAACAATGATTAACTTCAGAGGTGATG</genome_strand>
        <mrna_strand>ATCAAATCGAAAAATTCTCAGAGAAACCCAGAAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGCAGTTGAGACTGGCTGCGGAACAAGTTGACTCGGTGATTGAGGATTTGAGTCAGTCTGTTAGGTTGAAGGGCGATAATGTGAAGGCTTTTTGCTTGTTGGGCGATTGTTACGAGAAAAAAGGCTTGAAGGAAGAGGCACGAAAGGCTTATCAGGAAGCTCAAAAGGTTCAGCCAAATTTTGCGCCTGCTCGAGAAGCACTTGACCGTTTGAATTCCGAGTCTTGATCTCTAATTGTTTGTTTCATTTTGTTGTTTTGTTCACTACGTAGTTCAATATAAAGGCAGTTATTATTCACGCTAAAATTAAACATTTGGAAAATTTATAGTTATATCCTTATATTTATATTAACAATGATTAACTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323940" ref_strand="+" ref_description="SGN-E323940 [cTOC-3-E22]">
      <seq>ccaaatcgaaaaattctcagagaaacccagaaaacgaaaatcgccatggattttttctccgataatcacatgtggcgtgatcttcttcttcaagcagtcttaattctcgtaacaatcttcatgttccttttcatgtacaacgttccccagaagtacttctcgaagcttcgtctccggaaccgggccgatatgcaatcgaagcgtcattttgttcaaggagctcaacttctttctcaagctaaatcagcagcagctaaggatcgatcgaagtctacttctcttgctaaatctgctgaagctcaagccgatttggctatagctttagacccgaaagatgctgcagctcacatactcaaggctttagctcttgatttacaggggtttaagacgtcggctcttgattccattgacgtcgcgctttcgccgctagccgtgaagtcgttgtcggagccggagaaagcggatgccttgtttaagcgggcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="103811" stop="104894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104111" g_stop="104594" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E323940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104111" e_stop="104594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCGAAAAATTCTCAGAGAAACCCAGAAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGC</genome_strand>
        <mrna_strand>CCAAATCGAAAAATTCTCAGAGAAACCCAGAAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716344" ref_strand="+" ref_description="SGN-E716344 [FB16DB09]">
      <seq>cattaaacgaaaatcgccatggattttttctccgataatcacatgtggcgtgatcttcttcttcaagcagtcttaattctcgtaacaatcttcatgttccttttcatgtacaacgttccccagaagtacttctcgaagcttcgtctccggaaccgggccgatatgcaatcgaagcgtcattttgttcaaggagctcaacttctttctcaagctaaatcagcagcagctaaggatcgatcgaagtctacttctcttgctaaatctgctgaagctcaagccgatttggctatagctttagacccgaaagatgctgcagctcacatactcaaggctttagctcttgatttacaggggtttaagacgtcggctcttgattccattgacgtcgcgctttcgccgctagccgtgaagtcgttgtcggagccggagaaagcggatgccttgtttaagcgggcgcagttgagactggctgcggaacaagttgactcggtgattgaggatttgagtcagtctgttaggttgaagggcgataatgtgaaggctttttgcttgttgggcgattgttacgagaaaaaaggcttgaaggaagaggcacgaaaggcttatcaggaagctcaaaaggttcagccaaattttgcgcctgctcgagaagcacttgaccgtttgaattccgagtcttgatctctaattgtttgtttcattttgttgttttgttcactacgtagttcaatataaaggcagttattattcacgctaaaattaaacatttggagaatttatagttatatccttatatttatattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="103838" stop="105242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104138" g_stop="104942" g_length="805"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="805" r_length="805" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E716344" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104138" e_stop="104942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGCAGTTGAGACTGGCTGCGGAACAAGTTGACTCGGTGATTGAGGATTTGAGTCAGTCTGTTAGGTTGAAGGGCGATAATGTGAAGGCTTTTTGCTTGTTGGGCGATTGTTACGAGAAAAAAGGCTTGAAGGAAGAGGCAAGAAAGGCTTATCAGGAAGCTCAAAAGGTTCAGCCAAATTTTGCGCCTGCTCGAGAAGCACTTGACCGTTTGAATTCCGAGTCTTGATCTCTAATTGTTTGTTTCATTTTGTTGTTTTGTTCACTACGTAGTTCAATATAAAGGCAGTTATTATTCACGCTAAAATTAAACATTTGGAGAATTTATAGTTATATCCTTATATTTATATTAA</genome_strand>
        <mrna_strand>CATTAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGCAGTTGAGACTGGCTGCGGAACAAGTTGACTCGGTGATTGAGGATTTGAGTCAGTCTGTTAGGTTGAAGGGCGATAATGTGAAGGCTTTTTGCTTGTTGGGCGATTGTTACGAGAAAAAAGGCTTGAAGGAAGAGGCACGAAAGGCTTATCAGGAAGCTCAAAAGGTTCAGCCAAATTTTGCGCCTGCTCGAGAAGCACTTGACCGTTTGAATTCCGAGTCTTGATCTCTAATTGTTTGTTTCATTTTGTTGTTTTGTTCACTACGTAGTTCAATATAAAGGCAGTTATTATTCACGCTAAAATTAAACATTTGGAGAATTTATAGTTATATCCTTATATTTATATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E201355" ref_strand="+" ref_description="SGN-E201355 [cLEC-4-I22]">
      <seq>attagtagaggaggaaaagagggcacttttggagctgagggactcccttaactatcccaatggatctacgctaatcaatgaatgggttgaagaaaattattgtgcgtgggctgctgtttcttgcatcagggatctaaataatgatgtacatgttcttgatattattcttaccagtaaaagggaacttggacttggaatatggtatcctgatgcaaacttgttgactcgtttcacgcatctccagtctctttatttatctggcaacgctattggcaactggatcatgccagaagcattatgcaaattgcgcaacctgaaggaattggatctaagtttcaaccctttaaatggcgatgctctgcctcattttcaagtatgtagcctcgcatctctggaacagctgcacctatcagggatttatccgagtttccctttaccactgctcagagcattgtgcggactaaagaatatgcggaaactagatctaagcaacaacaatcttacagatgatagcatgccacattgcctgtttgatgatctttcataccttgaaagcctagacttgtctgggaataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="105432" stop="106985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105732" g_stop="106024" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106025" i_stop="106302" i_length="278">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106303" g_stop="106458" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="449" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106459" i_stop="106556" i_length="98">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106557" g_stop="106685" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="578" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E201355" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105732" e_stop="106024"/>
          <exon e_start="106303" e_stop="106458"/>
          <exon e_start="106557" e_stop="106685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTAGAGGAGGAAAAGAGGGCACTTTTGGAGCTGAGGGACTCCCTTAACTATCCCAATGGATCTACGCTAATCAATGAATGGGTTGAAGAAAATTATTGTGCGTGGGCTGCTGTTTCTTGCATCAGGGATCTAAATAATGATGTACATGTTCTTGATATTATTCTTACCAGTAAAAGGGAACTTGGACTTGGAATATGGTATCCTGATGCAAACTTGTTGACTCGTTTCACGCATCTCCAGTCTCTTTATTTATCTGGCAACGCTATTGGCAACTGGATCATGCCAGAAGGTATTCTTTTCATCAAAATGTTCTTCCATTACCTGTATCCATGTTTATCAAACCTGCAAGTGCAACAACTTACCTCCCTCAGTATTTAGTAGTATAATCTGTACAAACTCTAACTGCTGTTAATATCTGTTAAACACAATTATTACTTTTCTTGAATCCTTAGAGCTTTAAGATTTGCTGCTTTTTTTGGAATGGATTCTGCACCGATGACCCTGATCTCCTTTCTTCATGTAGTTGCATGTTTTGGAGTATTACTTTTTAACAACTTATACTTGCAGCATTATGCAAATTGCGCAACCTGAAGGAATTGGATCTAAGTTTCAACCCTTTAAATGGCGATGCTCTGCCTCATTTTCAAGTATGTAGCCTCGCATCTCTGGAACAGCTGCACCTATCAGGGATTTATCCTAGTTTCCCTTTACCACTGCTCAGAGGTTTGTTTTCTCAGTTGTCGAATTTTCATCAGTCATAGTGGTCCATCAAAGTTTCTATCTTGGTTTTGATATTAGCTCGTTTTGCTGAATTGATGTAGCATTGTGCGGACTAAAGAATATGCGGAAACTAGATCTAAGCAACAACAATCTTACAGATGATAGCATGCCACATTGCCTGTTTGATGATCTTTCATACCTTGAAAGCCTAGACTTGTCTGGGAATAACC</genome_strand>
        <mrna_strand>ATTAGTAGAGGAGGAAAAGAGGGCACTTTTGGAGCTGAGGGACTCCCTTAACTATCCCAATGGATCTACGCTAATCAATGAATGGGTTGAAGAAAATTATTGTGCGTGGGCTGCTGTTTCTTGCATCAGGGATCTAAATAATGATGTACATGTTCTTGATATTATTCTTACCAGTAAAAGGGAACTTGGACTTGGAATATGGTATCCTGATGCAAACTTGTTGACTCGTTTCACGCATCTCCAGTCTCTTTATTTATCTGGCAACGCTATTGGCAACTGGATCATGCCAGAAG......................................................................................................................................................................................................................................................................................CATTATGCAAATTGCGCAACCTGAAGGAATTGGATCTAAGTTTCAACCCTTTAAATGGCGATGCTCTGCCTCATTTTCAAGTATGTAGCCTCGCATCTCTGGAACAGCTGCACCTATCAGGGATTTATCCGAGTTTCCCTTTACCACTGCTCAGAG..................................................................................................CATTGTGCGGACTAAAGAATATGCGGAAACTAGATCTAAGCAACAACAATCTTACAGATGATAGCATGCCACATTGCCTGTTTGATGATCTTTCATACCTTGAAAGCCTAGACTTGTCTGGGAATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207295" ref_strand="+" ref_description="SGN-E207295 [cLEC-30-O8]">
      <seq>attggcaactggatcatgccagaagcattatgcaaattgcgcaacctgaaggaattggatctaagtttcaaccctttaaatggcgatgctatgcctcattttcaagtatgtagcctcgcatctctggaacagctgcacctatcagggatttattcgagtttccctttaccactgctcagagcattgtgcggactaaagaatatgcggaaactagatctaagcaacaaccatcttacagatgatagcatgccacattgcctgtgtgatgatctttcataccttgaaagcctagacttgtctgggaataaccttaagaattcccatcacattctatcagctctatgtacactgcggaatctcaaaaggttggatctgagcgataactttcttgatgatggaagcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="105700" stop="107844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106000" g_stop="106024" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106025" i_stop="106302" i_length="278">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106303" g_stop="106458" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="181" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106459" i_stop="106556" i_length="98">
            <donor d_prob="0.941" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106557" g_stop="106712" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="337" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106713" i_stop="107475" i_length="763">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.897" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107476" g_stop="107544" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="406" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E207295" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106000" e_stop="106024"/>
          <exon e_start="106303" e_stop="106458"/>
          <exon e_start="106557" e_stop="106712"/>
          <exon e_start="107476" e_stop="107544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCAACTGGATCATGCCAGAAGGTATTCTTTTCATCAAAATGTTCTTCCATTACCTGTATCCATGTTTATCAAACCTGCAAGTGCAACAACTTACCTCCCTCAGTATTTAGTAGTATAATCTGTACAAACTCTAACTGCTGTTAATATCTGTTAAACACAATTATTACTTTTCTTGAATCCTTAGAGCTTTAAGATTTGCTGCTTTTTTTGGAATGGATTCTGCACCGATGACCCTGATCTCCTTTCTTCATGTAGTTGCATGTTTTGGAGTATTACTTTTTAACAACTTATACTTGCAGCATTATGCAAATTGCGCAACCTGAAGGAATTGGATCTAAGTTTCAACCCTTTAAATGGCGATGCTCTGCCTCATTTTCAAGTATGTAGCCTCGCATCTCTGGAACAGCTGCACCTATCAGGGATTTATCCTAGTTTCCCTTTACCACTGCTCAGAGGTTTGTTTTCTCAGTTGTCGAATTTTCATCAGTCATAGTGGTCCATCAAAGTTTCTATCTTGGTTTTGATATTAGCTCGTTTTGCTGAATTGATGTAGCATTGTGCGGACTAAAGAATATGCGGAAACTAGATCTAAGCAACAACAATCTTACAGATGATAGCATGCCACATTGCCTGTTTGATGATCTTTCATACCTTGAAAGCCTAGACTTGTCTGGGAATAACCTTAAGAATTCCCATCACATTCTATCAGGTAAAGTTGGATTAATTTCTATTGTCACATACATGATCTTGTGCATATTGTCATTACTATATTCATTTTCCTAACGTTAGAATATCGTTTACAATTTAGTATTTCCATGTATTAGTGATTTTCTCATTTAGCCGAGGGTTTAGCGGAAACAACCTTCTACCTCTGAGGTAGGTGGGGGTAAGGCTTGCATACACTCTACCCTCGTGTGATTACTCTGGATACTATGTTTTTCTCGTTGTAATGGTTTCCTCCAGCTTAAAAAACTGTGAATTGGTGGTGGACCCTCTCTTCTGCTCTACTCAACTACCATCTTCTCGGCCAAATGCTGTCGTCAAACCATTGGTATTGAATCTACATGAAACACATAAAAACTGACTATAATTTTAAGTTAATGGTATGATTCTCATTATCTAAAAATAGCTTCTCTAAAATGAAACAAATGTCACCATGAAGGAAGCCATTAGATGAAGATTGCACAGAGGAACTATTTTCTTGATTTGTTTATTCCAACTGTGACCTTGCATCTGTAGATATCTGAAGAATTTTTTTTCGATAAAGAACATGGTCTGAATGAAGTTCTAGTCTGTAGCTTTTTCCAGTTTCCCCTAACAATCTTTGCACCCGTATAAGATAGCAGCATGAATTATTGATCCCCTGGAGTTGAGTTTTCAGGTTGTTTCTATGTACACGAAACTCATTTTCTACTCTGATTAATGAACTTGACAAAAAACAGCCCTTTTGTTGCTTCATATATTTCTTGCAGCTTTATGTACACTGCGGAATCTCAAAAGGTTGGATCTGAGCGATAACTTTCTTGATGATGGAAGCATAC</genome_strand>
        <mrna_strand>ATTGGCAACTGGATCATGCCAGAAG......................................................................................................................................................................................................................................................................................CATTATGCAAATTGCGCAACCTGAAGGAATTGGATCTAAGTTTCAACCCTTTAAATGGCGATGCTATGCCTCATTTTCAAGTATGTAGCCTCGCATCTCTGGAACAGCTGCACCTATCAGGGATTTATTCGAGTTTCCCTTTACCACTGCTCAGAG..................................................................................................CATTGTGCGGACTAAAGAATATGCGGAAACTAGATCTAAGCAACAACCATCTTACAGATGATAGCATGCCACATTGCCTGTGTGATGATCTTTCATACCTTGAAAGCCTAGACTTGTCTGGGAATAACCTTAAGAATTCCCATCACATTCTATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATGTACACTGCGGAATCTCAAAAGGTTGGATCTGAGCGATAACTTTCTTGATGATGGAAGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745615" ref_strand="+" ref_description="SGN-E745615 [GI|47105255]">
      <seq>gtgtgagaaaaaaggaaaaaatgcacggaagaccacgcaaagctccaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaagaacatacctaatgagaaggagctagaatacactaccgacatgatatatgataatttcagcaactattctgcttggcacaaccgcagtgttcttctttctcatttgctgaaggaaaaagcaaaaggatattctcccaaggacaatgtatttacagaagagtacgagtttgtgcgtcatgctcttttcacagatccagatgatcaaagtggttggttttatcatctgtggcttcttgatcagacagttaaactagagacattgttggtttcttcatggccaccacatggctgtaatctttctttatccacggatggatcgtttggagattgctctttatcaccccttacgagtcttcagactaatactagaacacttccactcattctctatttcagcgaagctgttgagaatatatgctcatctacagtagtaatcgaatgtgaaaatattgcgagtaatgagctcgtctggagatcactctcaggagatggagctgggtctgctcaagcttggttgacatatcttaatttcccagaggaacatgcacattctgaaaaggcttaccaagtagaggtcagccttgctcattctcgaggcattttctcttcaactggtgttcatcatggagattcttctcatattgaattttcagtgtctgtaccacctcatcgttcagaacatgttgatttaaataatgaagggaaaatctcttggagtgatgaaagtttctgcactcatgacacacagtttcttgagtcagctctgattaacttgttccatctggaaagaaccaagatagatgaaacagtggtggactatcagtggaatattacgaccatcaataatgagatatcacactatagggagttgttatcaacaatgaactgtaaaattgggaagctgacacttgccagactgctgattgcccatgacaccttaatgtcatatactggcactagtcacagaaatgttagccaccatgcagaagttcttcaactttatgacgatttaaagaaaatggacccagcacatctccacaactaccaggatgagtacagtatagtacttctgaaacagacaatctccaatcaagaattgttgttgaagcactgccgtaaatatagggatccatcttctccaagaatcaataatttctgtctgcggcttaataatctctcactttcacgtattgggtctatggagcaacttttgtgggtccaagtattagatctcagccacaaccaacttaagacacttgaaggcttggaggtgatgcaacttctctcctgcttgaatgttagctacaataaactctgcagttttactgcattggagcctttgaaactgctaaggtcactgaaagtcttagatatctcttacaacgagattggagcgcattctattgacacgaggaggtatttgtgctcttcccctcttaaccatagaagtggaggtgactggaaaactgaggaatctgagatccattgcgttgaggtggctgataattgggaagcctatgctatttttaaagacttgaacttgatacaattagatcttaaaggaaatgcagtttccgatgaaaagatacaatcacttctaattaagctattaccatcactaaagtggcttgatggtgaaagttgccgataattaaaagttacatctccgtcactgttactgaatttctctacagaacagacaagggtaatcttttgttactattatgaattctagatatctgatgcacggaactgtttttgtaccatgtagttgttgcaagacttgcttgtaattgtttggctttttcagatgatctctatttatcagcacctaaacagagattttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119928" stop="27855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119628" g_stop="119493" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="305" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="466" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117770" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="571" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117769" i_stop="117205" i_length="565">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117204" g_stop="116404" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="1372" r_length="801" r_score="0.998"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="116403" i_stop="116314" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="116313" g_stop="116124" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="1562" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="116123" i_stop="115814" i_length="310">
            <donor d_prob="0.898" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="115813" g_stop="115630" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1563" r_stop="1746" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="115629" i_stop="112694" i_length="2936">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="112693" g_stop="112110" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1747" r_stop="2330" r_length="584" r_score="0.998"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="112109" i_stop="111193" i_length="917">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111192" g_stop="111174" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="2331" r_stop="2349" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E745615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119628" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117770"/>
          <exon e_start="117204" e_stop="116404"/>
          <exon e_start="116313" e_stop="116124"/>
          <exon e_start="115813" e_stop="115630"/>
          <exon e_start="112693" e_stop="112110"/>
          <exon e_start="111192" e_stop="111174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAGGTATGGTGATATCTATTACTCATTCTTTTTGGTTCACTCTTGTTAAGATCTATTTCCTGAGTAGAAAAAGTTCTCTAGGTTCACATTGTTGTAAATATGCTGCTCTAGAGCAAAAACTAAAGTCACTAACATACTAAGAAGGCAGGAAGACAGTCGTACCCCTCGAAGAAAAAGTTATGTTACTTTTAACAAATGGAATATTAAAAATGTAGCTTTAGACAGGTCATTATCACATATGCATGCCCTTATCATGTGTTTCAAAAGTGTGTACAAGACTTCCTCTTTTGGCGTATTTGATGGACAGATTATACAACACTATGTGTCATAGCATGGCTCTAGTAAGCACATTAATATGAAAATTCTATTGGTTTAAGAGCCCTTACTTTCAATAACTGCGTTATTTTTTTATTGGCTCCCAGATGCACTCATCGTTTTAAAAATTAAAGTTATTAAGTATCACATACCATTTTAACTCAGGAAGAAGTCTCATTCTGATCTATATTCTACTGTGTTGTGTCTCTTATCTCTTCCAAAGGTTCATCTCCCCATAATGACTCGTATACAGTGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTTACAGAAGAGTACGAGTTTGTGCGTCATGCTCTTTTCACAGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTGTGGCTTCTTGATCAGACAGTTAAACTAGAGACATTGTTGGTTTCTTCATGGCCACCACATGGCTGTAATCTTTCTTTATCCACGGATGGATCGTTTGGAGATTGCTCTTTATCACCCTTTACGAGTCTTCAGACTAATACTAGAACACTTCCACTCATTCTCTATTTCAGCGAAGCTGTTGAGAATATATGCTCATCTACAGTAGTAATCGAATGTGAAAATATTGCGAGTAATGAGCTCGTCTGGAGATCACTCTCAGGAGATGGAGCTGGGTCTGCTCAAGCTTGGTTGACATATCTTAATTTCCCAGAGGAACATGCACATTCTGAAAAGGCTTACCAAGTAAAGGTCAGCCTTGCTCATTCTCGAGGCATTTTCTCTTCAACTGGTGTTCATCATGGAGATTCTTCTCATATTGAATTTTCAGTGTCTGTACCACCTCATCGTTCAGAACATGTTGATTTAAATAATGAAGGGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGATTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGTGGAATATTACGACCATCAATAATGAGATATCACACTATAGGGAGTTGTTATCAACAATGAACTGGTAGGAAATTTGCTTAAATGCTGAATAGTTCATCTATGGCAGCCGTATTTTCCATCGTATCCTCTCTTATTAGTTCTTTGTCTGTTTCAGTAAAATTGGGAAGCTGACACTTGCCAGACTGCTGATTGCCCATGACACCTTAATGTCATATACTGGCACTAGTCACAGAAATGTTAGCCACCATGCAGAAGTTCTTCAACTTTATGACGATTTAAAGAAAATGGACCCAGCACATCTCCACTACTACCAGGATGAGTACAGTATAGTACTTCTGAAACAGGTATCTGTTTCTGTTGTATTATCCATGTACCTAGTCTTCTAACGGGTAGCTCATTGTACTCTTTCTGTATTACAAAACCCTCAACGAACCCACCTCTTTTACTATGGTTTTTTTCTTATTGATAATTTGGAAAAACTAATGCCATAAAGAAATTGGAGACCTTGTGGTTTTTTCGTTTCATAATGCCAGCAACAACTTGGATTCAAAATGTGAAGACTTGTAATGTAAATTCAATTTCAAAATAGGAATTTTGTGATATGTTATTGAATCTTACCTAGAACTACACAAGCTTAATCATCTGATGTTGCAGACAATCTCCAATCAAGAATTGTTGTTGAAGCACTGCCGTAAATATAGGGATCCATCTTCTCCAAGAATCAATAATTTCTGTCTGCGGCTTAATAATCTCTCACTTTCACGTATTGGGTCTATGGAGCAACTTTTGTGGGTCCAAGTATTAGATCTCAGCCACAACCAACTTAAGACACTTGAAGGTAATTTCTCAAGCGATTTCTAGTTATCTTTCTTGTTAATTCAAGTTCTCTCAAACTACGGGGCTTCACAGCGCTTCCGTAGCATTTGCTTCTTCTGTCTATTGAAATGTTCACTCAGAAGTCAGAAGACTGTTTTCCAGCTTTCTGTCCAAGTTAAGACTTTCTTTGGTTGAAACAGAATGTGCTAAGATTAGGTCACAACCGTCATCCAGAAGAAAAAAAAAAAGAAGATATTTTGTTTATGGCCCAGGGAAGGGAGGTTGTATTGCATATGGTCTAGTTAGTTTGATAATTTCTAATGCAACTTCTGAAATTGTAATAATTAAACTTGCATACCTTACAACACATCCAAGCCATCTGCTCTTTATTTATTTAACCAGTTCCTTTTCATGGGTGGTGAAGGAGGTCAGGTCAGCAAAAGAACTCCCAAAGATGCGGGATAGTGTGTATTCTCTCCTTTATTTGCAATGGCTCTTATCTGATTGTGAGAACACTATAAGGATAATATGGTGGGTCTTTTCCCAGTCAAAATCTGTCCTAAAGAAACAAGTAAAGAAGAACTATTATATTTACCAGCAAAATCAGAGCTTCTCTGTCAGTCTTTCATTTTTCTGGATGATTAGCGGTCTATCTGAGTTTTTTCAATTTTTTCTAACTTTTCATAGGAAAATACAATTTATTAATAGGGAAGTATTGTGTCTAGGAATCGTCAAGCTAACAAACTAATCAAGTACATAGAGTTCACCAATTTTTTGAGGTCTCATGAAAAGGTCTTTAACATCACATATAGGTAAAAAGAGCCCTTATCCTTATCTTGTATTCATTCTTCTTATTAGGTAGTGCTCTAAGAAAATTTGTTGCAAATTTTTTAACCATCTTGATATATGGTCAGTGTTATCAAAGGCGTGCTTCGCCTCGCTTTATGTGCACTTCAGTGTCGTTATCAAAGTTTTAATACAAATTTTTCCTTGTTAATGAGCCTCTTATGAAGAAGTGAGACTAAACAATTGATATTTCATTTTATCATAATTTTTTTTCAATTTCTTTAGTCATATGTATTTGTCATTCATGTTTATATTATTAGTCTTGAGATTTTTTTTTCTCCCTTTCCGCTTTTTTTCATTGAAGCCCACGTTTTATTTGCGCTTTGCGCATAAAGCCTCCATGAACCTTTGAACTTTTTTGCGCTTTTCGCTTTTAACAACATTGTATATGGTTTAGGAGAATGAGAGGGATAGAACATTCTTCCAAGATATGATAGGTATGCATATGATAGCTGTATTAAATCTTTGTTGTAAAGAGTTAATATCATGGTATGTAGATCATTTGGATAGCTTGTTATATAAAGACTGGTCGAGCTACTCGTGCAAATTATAAATAGTTTAGACATCATGTTGGTCTGATATTTAATGACACGATCTTGACTTGAAAAAAAGCATCTTGATCTTTTTATGATCTTCATAATGATAATGGCATCTTGTTAAAAAGCATCTAAGTGTTAGTTTGGTTAATAAATTGACTAGCCAAAGTTAGTCTTGTTTAGATTTTCTGTTGCAATATTATGGCCTCTGTTGGTAAACTGCTATGGCAACTAGCTGTGAAGGAAGATGTGTTACGGATCAGGTGGGTGCATGGAGGATATATGAAAAACAATGATAACATATGGATACATACCCCACCATTGAACTCAAGTTGGTAAGGTTTATACCTTGAAATCATGATGCAGGCATGGTATTCATCTGGTGTTGACTTGCTCACTCCTGGGGGGAAGTACTCGCTCACACAGAGTTACAATACACTATTGGGGCAACATGCTAGACTTAGAGTGTCTAACTTAATCCGGACTATTTGCTCAGCCTAAGCACAGCTTCATATTGTAGCTAGCTATTCAAGACAAATTACTAACCAAAGAGAGACTCAAGAGATCAAATATTCCAGTGGAGGGTGACACTGCTGCTTGTGTGATATATCACTGGGGGAGACTAATATCCATCTGTTTTCTACTTGTGAATGGATGGTGAGAGTTCAAACTGAAATTCAGCAATGGTTTGGGACACTTACTCCCACTGAAAGTGTCAAACATATCCTGAATAGAATCAGAAGGAAGCATTGACAGCAATTTCTCAAGGAACTTATTGCTGCATTGTGTGGAGCAGTGATATAACGGATTCGGAGAGCAAGGAACTGGAAACTGTTTAAAGGCATTACTGTAAATACAGATACAGCCGTGACATAGATTATGAAGGAATTTGTATATAGACTTGAGGTAGTTAAACTGTCTAGAAAGGCAAATAGATATAGCTGGTTGTTGCTTAGATTTTGTGTAACTAGATCTCTGTAGGAGGCTTAACTCTTTCTTAGAAGGTGATTAGGAGATTGAGTGCTCTTTAGGTGTATTTTTTTGTGCTTTGTGAGAAATATAGGAAAAGAATATTATTGAATTGTTGTTGTGTCTATATTATTACACAAGACCCTATTTATAGACCATAGATTACAATCCTTTATCAAGTAGGATACTATTTAGTATTCCTATTCCTATTCTAATTGGATTGTATAAACATATTCCTATTTTATAGGATTGTATAAACCTATTCCTATTCTAATAGGATCGTATAAACCTATTCCTATTTCAATAGGATTATATAAACCTATTCCTATTCTAACATGCTTGTTGGTGGTAATTTACACTGGTTACCCCAAAAAAAAAAAGCATGATGGTCAGATGTTGTTATCCAGTAAAGTTGACCGTGTTATAAGAAGTAGCAATTGATCTGACATTTCTTGCGGAAGTTCTCAATCATGTTGACTTCAAAGGATTGCTTCTAATTTTCTGTTATATTAAATTCCTTGCCTGAGTATCATGCCTTTCTTCAATGGCTTTTTCATGCTTAAACCTTGAAGCTTGCTTCATTCCGTTATTCTCTAAATTGATGCAGGCTTGGAGGTGATGCAACTTCTCTCCTGCTTGAATGTTAGCTACAATAAACTCTGCAGTTTTACTGCATTGGAGCCTTTGAAACTGCTAAGGTCACTGAAAGTCTTAGATATCTCTTACAACGAGATTGGAGCGCATTCTATTGACACGAGGAGGTATTTGTGCTCTTCCCCTCTTAACCATAGAAGTGGAGGTGACTGGAAAACTGAGGAATCTGAGATCCATTGCGTTGAGGTGGCTGATAATTGGGAAGCCTATGCTATTTTTAAAGACTTGAACTTGATACAATTAGATCTTAAAGGAAATGCAGTTTCCGATGAAAAGATACAATCACTTCTAATTAAGCTATTACCATCACTAAAGTGGCTTGATGGTGAAAGTTGCCGATAATTAAAAGTTACATCTCCGTCACTGTTACTGAATTTCTCTACAGAACAGACAAGGGTAATCTTTTGTTACTATTATGAATTTTAGATATCTGATGCACGGAACTGTTTTTGTACCATGTAGTTGTTGCAAGACTTGCTTGTAATTGTTTGGCTTTTTCAGATGATCTCTATTTATCAGCACCTAAACAGAGATTTTGTTTTTCTGAGAGTTGCTACCAAATTTATCTTAAGTGTTAAAGCATTTCTTCCGTTATATTGTTCAACCATCATGTCATTCAAATATATATGAATTATCATACAGGGAAAAAAACATTACATGCACTTTCTTTTATTTATATTTCATAGAATTTGATGCTTTCACTTTCAAAATATATATGATTGCATAAATCTAAGCTCTGTGTGCCAGAGACAACTGAGGTACTCAGATGTCTAGTAATCCCAAAAAGAAGCCCAGGTATTGGACTGAAAATGGCTTGAGATTTTCATTTTCATTTTCAGTAGTACTAATGTACAGAGGATGATTTAGAATGTGTATAAGCCAAAGATTCAAGAATACAATGAAGAGACTGATCGAGTTAACGCAACCCAGAAAAGCAGTGACATAATAGTGGAAGGGGCAGTTTGCAATGGCGCGAGGTATCTGAATTGCAACATCTTAGCAATGCAGAAATTCAGGTATTTGATAATTAAGGTAATGATACTTCCAGATAGCCATGGAAGTAGCTCATTTTCAGCTTCATCTCTTAGCACTAACTTTATCTTCTCAGGAACCAAATTCAAGTATAATTTAGCAGTAATATTTAGTAGCACTGCTAGAATCATGATATACCAAATTGCCTTGTTCATGCTGTTGAGTACCCTAGATACTTGTACTTTTGACTCCATTCTTGGTTTTAAAAAGGCTGTTGTTTACTTTACTTTTCTTACTCCGAGTAGGTTGAAAAAGCTGCTAAGAAGAATAGTTTTCTTTTCTCTTGCGTTCCGTTTTGTTGTCTGATAGGATGGTGGACAGAAGACTATTTATAGGGAACTTTTTGTTTAGAGAAGTGTCAAGCAAGCTAATTCCTTGGTCAACAATCCCATGATCAAAGGTTATAAAGATTCTCTATTTTTGAAAAAAAAAAAAAATCCT</genome_strand>
        <mrna_strand>GTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGAACATACCTAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTTACAGAAGAGTACGAGTTTGTGCGTCATGCTCTTTTCACAGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTGTGGCTTCTTGATCAGACAGTTAAACTAGAGACATTGTTGGTTTCTTCATGGCCACCACATGGCTGTAATCTTTCTTTATCCACGGATGGATCGTTTGGAGATTGCTCTTTATCACCCCTTACGAGTCTTCAGACTAATACTAGAACACTTCCACTCATTCTCTATTTCAGCGAAGCTGTTGAGAATATATGCTCATCTACAGTAGTAATCGAATGTGAAAATATTGCGAGTAATGAGCTCGTCTGGAGATCACTCTCAGGAGATGGAGCTGGGTCTGCTCAAGCTTGGTTGACATATCTTAATTTCCCAGAGGAACATGCACATTCTGAAAAGGCTTACCAAGTAGAGGTCAGCCTTGCTCATTCTCGAGGCATTTTCTCTTCAACTGGTGTTCATCATGGAGATTCTTCTCATATTGAATTTTCAGTGTCTGTACCACCTCATCGTTCAGAACATGTTGATTTAAATAATGAAGGGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGATTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGTGGAATATTACGACCATCAATAATGAGATATCACACTATAGGGAGTTGTTATCAACAATGAACTG..........................................................................................TAAAATTGGGAAGCTGACACTTGCCAGACTGCTGATTGCCCATGACACCTTAATGTCATATACTGGCACTAGTCACAGAAATGTTAGCCACCATGCAGAAGTTCTTCAACTTTATGACGATTTAAAGAAAATGGACCCAGCACATCTCCACAACTACCAGGATGAGTACAGTATAGTACTTCTGAAACAG......................................................................................................................................................................................................................................................................................................................ACAATCTCCAATCAAGAATTGTTGTTGAAGCACTGCCGTAAATATAGGGATCCATCTTCTCCAAGAATCAATAATTTCTGTCTGCGGCTTAATAATCTCTCACTTTCACGTATTGGGTCTATGGAGCAACTTTTGTGGGTCCAAGTATTAGATCTCAGCCACAACCAACTTAAGACACTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAGGTGATGCAACTTCTCTCCTGCTTGAATGTTAGCTACAATAAACTCTGCAGTTTTACTGCATTGGAGCCTTTGAAACTGCTAAGGTCACTGAAAGTCTTAGATATCTCTTACAACGAGATTGGAGCGCATTCTATTGACACGAGGAGGTATTTGTGCTCTTCCCCTCTTAACCATAGAAGTGGAGGTGACTGGAAAACTGAGGAATCTGAGATCCATTGCGTTGAGGTGGCTGATAATTGGGAAGCCTATGCTATTTTTAAAGACTTGAACTTGATACAATTAGATCTTAAAGGAAATGCAGTTTCCGATGAAAAGATACAATCACTTCTAATTAAGCTATTACCATCACTAAAGTGGCTTGATGGTGAAAGTTGCCGATAATTAAAAGTTACATCTCCGTCACTGTTACTGAATTTCTCTACAGAACAGACAAGGGTAATCTTTTGTTACTATTATGAATTCTAGATATCTGATGCACGGAACTGTTTTTGTACCATGTAGTTGTTGCAAGACTTGCTTGTAATTGTTTGGCTTTTTCAGATGATCTCTATTTATCAGCACCTAAACAGAGATTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262545" ref_strand="+" ref_description="SGN-E262545 [cLEG-63-A20]">
      <seq>ggaaaatctcttggagtgatgaaagtttctgcactcatgacacacagtttcttgagtcagctctgattaacttgttccatctggaaagaaccaagatagatgaaacagtggtggactatcagtggaatattacgaccatcaataatgagatatcacactatagggagttgttatcaacaatgaactgtaaaattgggaagctgacacttgccagactgctgattgcccatgacaccttaatgtcatatactggcactagtcacagaaatgttagccaccatgcagaagttcttcaactttatgacgatttaaagaaaatggacccagcacatctccactactaccaggatgagtacagtatagtacttctgaaacagacaatctccaatcaagaattgttgttgaagcactgccgtaaatatagggatccatcttctccaagaatcaataatttctgtctgcggcttaataatctctcactttcacgtattgggtctatggagcaacttttgtgggtccaagtattagatctcagccacaaccaacttaagacacttgaaggcttggaggtgatgcaacttctctcctgcttgaatgttagctacaataaactctgcagttttactgcattggagcctttgaaactgctaaggtcactgaaagtcttagatatctcttacaacgagattggagcgcattctattgacacgaggaggtatttgtgctcttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="116890" stop="112223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116590" g_stop="116404" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116403" i_stop="116314" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116313" g_stop="116124" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="377" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116123" i_stop="115814" i_length="310">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115813" g_stop="115630" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="561" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115629" i_stop="112694" i_length="2936">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112693" g_stop="112523" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="732" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E262545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116590" e_stop="116404"/>
          <exon e_start="116313" e_stop="116124"/>
          <exon e_start="115813" e_stop="115630"/>
          <exon e_start="112693" e_stop="112523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGATTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGTGGAATATTACGACCATCAATAATGAGATATCACACTATAGGGAGTTGTTATCAACAATGAACTGGTAGGAAATTTGCTTAAATGCTGAATAGTTCATCTATGGCAGCCGTATTTTCCATCGTATCCTCTCTTATTAGTTCTTTGTCTGTTTCAGTAAAATTGGGAAGCTGACACTTGCCAGACTGCTGATTGCCCATGACACCTTAATGTCATATACTGGCACTAGTCACAGAAATGTTAGCCACCATGCAGAAGTTCTTCAACTTTATGACGATTTAAAGAAAATGGACCCAGCACATCTCCACTACTACCAGGATGAGTACAGTATAGTACTTCTGAAACAGGTATCTGTTTCTGTTGTATTATCCATGTACCTAGTCTTCTAACGGGTAGCTCATTGTACTCTTTCTGTATTACAAAACCCTCAACGAACCCACCTCTTTTACTATGGTTTTTTTCTTATTGATAATTTGGAAAAACTAATGCCATAAAGAAATTGGAGACCTTGTGGTTTTTTCGTTTCATAATGCCAGCAACAACTTGGATTCAAAATGTGAAGACTTGTAATGTAAATTCAATTTCAAAATAGGAATTTTGTGATATGTTATTGAATCTTACCTAGAACTACACAAGCTTAATCATCTGATGTTGCAGACAATCTCCAATCAAGAATTGTTGTTGAAGCACTGCCGTAAATATAGGGATCCATCTTCTCCAAGAATCAATAATTTCTGTCTGCGGCTTAATAATCTCTCACTTTCACGTATTGGGTCTATGGAGCAACTTTTGTGGGTCCAAGTATTAGATCTCAGCCACAACCAACTTAAGACACTTGAAGGTAATTTCTCAAGCGATTTCTAGTTATCTTTCTTGTTAATTCAAGTTCTCTCAAACTACGGGGCTTCACAGCGCTTCCGTAGCATTTGCTTCTTCTGTCTATTGAAATGTTCACTCAGAAGTCAGAAGACTGTTTTCCAGCTTTCTGTCCAAGTTAAGACTTTCTTTGGTTGAAACAGAATGTGCTAAGATTAGGTCACAACCGTCATCCAGAAGAAAAAAAAAAAGAAGATATTTTGTTTATGGCCCAGGGAAGGGAGGTTGTATTGCATATGGTCTAGTTAGTTTGATAATTTCTAATGCAACTTCTGAAATTGTAATAATTAAACTTGCATACCTTACAACACATCCAAGCCATCTGCTCTTTATTTATTTAACCAGTTCCTTTTCATGGGTGGTGAAGGAGGTCAGGTCAGCAAAAGAACTCCCAAAGATGCGGGATAGTGTGTATTCTCTCCTTTATTTGCAATGGCTCTTATCTGATTGTGAGAACACTATAAGGATAATATGGTGGGTCTTTTCCCAGTCAAAATCTGTCCTAAAGAAACAAGTAAAGAAGAACTATTATATTTACCAGCAAAATCAGAGCTTCTCTGTCAGTCTTTCATTTTTCTGGATGATTAGCGGTCTATCTGAGTTTTTTCAATTTTTTCTAACTTTTCATAGGAAAATACAATTTATTAATAGGGAAGTATTGTGTCTAGGAATCGTCAAGCTAACAAACTAATCAAGTACATAGAGTTCACCAATTTTTTGAGGTCTCATGAAAAGGTCTTTAACATCACATATAGGTAAAAAGAGCCCTTATCCTTATCTTGTATTCATTCTTCTTATTAGGTAGTGCTCTAAGAAAATTTGTTGCAAATTTTTTAACCATCTTGATATATGGTCAGTGTTATCAAAGGCGTGCTTCGCCTCGCTTTATGTGCACTTCAGTGTCGTTATCAAAGTTTTAATACAAATTTTTCCTTGTTAATGAGCCTCTTATGAAGAAGTGAGACTAAACAATTGATATTTCATTTTATCATAATTTTTTTTCAATTTCTTTAGTCATATGTATTTGTCATTCATGTTTATATTATTAGTCTTGAGATTTTTTTTTCTCCCTTTCCGCTTTTTTTCATTGAAGCCCACGTTTTATTTGCGCTTTGCGCATAAAGCCTCCATGAACCTTTGAACTTTTTTGCGCTTTTCGCTTTTAACAACATTGTATATGGTTTAGGAGAATGAGAGGGATAGAACATTCTTCCAAGATATGATAGGTATGCATATGATAGCTGTATTAAATCTTTGTTGTAAAGAGTTAATATCATGGTATGTAGATCATTTGGATAGCTTGTTATATAAAGACTGGTCGAGCTACTCGTGCAAATTATAAATAGTTTAGACATCATGTTGGTCTGATATTTAATGACACGATCTTGACTTGAAAAAAAGCATCTTGATCTTTTTATGATCTTCATAATGATAATGGCATCTTGTTAAAAAGCATCTAAGTGTTAGTTTGGTTAATAAATTGACTAGCCAAAGTTAGTCTTGTTTAGATTTTCTGTTGCAATATTATGGCCTCTGTTGGTAAACTGCTATGGCAACTAGCTGTGAAGGAAGATGTGTTACGGATCAGGTGGGTGCATGGAGGATATATGAAAAACAATGATAACATATGGATACATACCCCACCATTGAACTCAAGTTGGTAAGGTTTATACCTTGAAATCATGATGCAGGCATGGTATTCATCTGGTGTTGACTTGCTCACTCCTGGGGGGAAGTACTCGCTCACACAGAGTTACAATACACTATTGGGGCAACATGCTAGACTTAGAGTGTCTAACTTAATCCGGACTATTTGCTCAGCCTAAGCACAGCTTCATATTGTAGCTAGCTATTCAAGACAAATTACTAACCAAAGAGAGACTCAAGAGATCAAATATTCCAGTGGAGGGTGACACTGCTGCTTGTGTGATATATCACTGGGGGAGACTAATATCCATCTGTTTTCTACTTGTGAATGGATGGTGAGAGTTCAAACTGAAATTCAGCAATGGTTTGGGACACTTACTCCCACTGAAAGTGTCAAACATATCCTGAATAGAATCAGAAGGAAGCATTGACAGCAATTTCTCAAGGAACTTATTGCTGCATTGTGTGGAGCAGTGATATAACGGATTCGGAGAGCAAGGAACTGGAAACTGTTTAAAGGCATTACTGTAAATACAGATACAGCCGTGACATAGATTATGAAGGAATTTGTATATAGACTTGAGGTAGTTAAACTGTCTAGAAAGGCAAATAGATATAGCTGGTTGTTGCTTAGATTTTGTGTAACTAGATCTCTGTAGGAGGCTTAACTCTTTCTTAGAAGGTGATTAGGAGATTGAGTGCTCTTTAGGTGTATTTTTTTGTGCTTTGTGAGAAATATAGGAAAAGAATATTATTGAATTGTTGTTGTGTCTATATTATTACACAAGACCCTATTTATAGACCATAGATTACAATCCTTTATCAAGTAGGATACTATTTAGTATTCCTATTCCTATTCTAATTGGATTGTATAAACATATTCCTATTTTATAGGATTGTATAAACCTATTCCTATTCTAATAGGATCGTATAAACCTATTCCTATTTCAATAGGATTATATAAACCTATTCCTATTCTAACATGCTTGTTGGTGGTAATTTACACTGGTTACCCCAAAAAAAAAAAGCATGATGGTCAGATGTTGTTATCCAGTAAAGTTGACCGTGTTATAAGAAGTAGCAATTGATCTGACATTTCTTGCGGAAGTTCTCAATCATGTTGACTTCAAAGGATTGCTTCTAATTTTCTGTTATATTAAATTCCTTGCCTGAGTATCATGCCTTTCTTCAATGGCTTTTTCATGCTTAAACCTTGAAGCTTGCTTCATTCCGTTATTCTCTAAATTGATGCAGGCTTGGAGGTGATGCAACTTCTCTCCTGCTTGAATGTTAGCTACAATAAACTCTGCAGTTTTACTGCATTGGAGCCTTTGAAACTGCTAAGGTCACTGAAAGTCTTAGATATCTCTTACAACGAGATTGGAGCGCATTCTATTGACACGAGGAGGTATTTGTGCTCTTCCC</genome_strand>
        <mrna_strand>GGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGATTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGTGGAATATTACGACCATCAATAATGAGATATCACACTATAGGGAGTTGTTATCAACAATGAACTG..........................................................................................TAAAATTGGGAAGCTGACACTTGCCAGACTGCTGATTGCCCATGACACCTTAATGTCATATACTGGCACTAGTCACAGAAATGTTAGCCACCATGCAGAAGTTCTTCAACTTTATGACGATTTAAAGAAAATGGACCCAGCACATCTCCACTACTACCAGGATGAGTACAGTATAGTACTTCTGAAACAG......................................................................................................................................................................................................................................................................................................................ACAATCTCCAATCAAGAATTGTTGTTGAAGCACTGCCGTAAATATAGGGATCCATCTTCTCCAAGAATCAATAATTTCTGTCTGCGGCTTAATAATCTCTCACTTTCACGTATTGGGTCTATGGAGCAACTTTTGTGGGTCCAAGTATTAGATCTCAGCCACAACCAACTTAAGACACTTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAGGTGATGCAACTTCTCTCCTGCTTGAATGTTAGCTACAATAAACTCTGCAGTTTTACTGCATTGGAGCCTTTGAAACTGCTAAGGTCACTGAAAGTCTTAGATATCTCTTACAACGAGATTGGAGCGCATTCTATTGACACGAGGAGGTATTTGTGCTCTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E367022" ref_strand="+" ref_description="SGN-E367022 [cLPT-6-P9]">
      <seq>tttatccgcggatggatcgtttggagattgctctttatcaccctttacgaatcttgagactaatactagaacacttccactcattctctatttcagcgaagctgttgagaatatatgctcatctacagtagtaatcgaatgtgaaaatattgcgagtaatgagctcgtctggagatcactctcaggagatggagctgggtctgctcaagcttggttgacatatcttaatttcccagaggaacatgcacattctgaaaaggcttaccaagtaaaggtcagccttgctcgttctcgaggcattttctcttcaactggtgttcatcatggagattcttctcatattgaattttcagtgtctgtaccaccttatcgttcagaacatgttgatttaaaaaatgaagggaaaatctcttggagtgatgaaagtttctgcactcatgacacacagtttcttgagtcagctctggttaacttgttccatctggaaagaaccaagatagatgaaacagtggtggactatcaggggaatattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="117291" stop="116158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116991" g_stop="116458" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E367022" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116991" e_stop="116458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCCACGGATGGATCGTTTGGAGATTGCTCTTTATCACCCTTTACGAGTCTTCAGACTAATACTAGAACACTTCCACTCATTCTCTATTTCAGCGAAGCTGTTGAGAATATATGCTCATCTACAGTAGTAATCGAATGTGAAAATATTGCGAGTAATGAGCTCGTCTGGAGATCACTCTCAGGAGATGGAGCTGGGTCTGCTCAAGCTTGGTTGACATATCTTAATTTCCCAGAGGAACATGCACATTCTGAAAAGGCTTACCAAGTAAAGGTCAGCCTTGCTCATTCTCGAGGCATTTTCTCTTCAACTGGTGTTCATCATGGAGATTCTTCTCATATTGAATTTTCAGTGTCTGTACCACCTCATCGTTCAGAACATGTTGATTTAAATAATGAAGGGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGATTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGTGGAATATTAC</genome_strand>
        <mrna_strand>TTTATCCGCGGATGGATCGTTTGGAGATTGCTCTTTATCACCCTTTACGAATCTTGAGACTAATACTAGAACACTTCCACTCATTCTCTATTTCAGCGAAGCTGTTGAGAATATATGCTCATCTACAGTAGTAATCGAATGTGAAAATATTGCGAGTAATGAGCTCGTCTGGAGATCACTCTCAGGAGATGGAGCTGGGTCTGCTCAAGCTTGGTTGACATATCTTAATTTCCCAGAGGAACATGCACATTCTGAAAAGGCTTACCAAGTAAAGGTCAGCCTTGCTCGTTCTCGAGGCATTTTCTCTTCAACTGGTGTTCATCATGGAGATTCTTCTCATATTGAATTTTCAGTGTCTGTACCACCTTATCGTTCAGAACATGTTGATTTAAAAAATGAAGGGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGGTTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGGGGAATATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332426" ref_strand="+" ref_description="SGN-E332426 [cTOD-17-M14]">
      <seq>tgtgtgtgagaaaaaaggaaaaaatgcacggaagaccacgcaaagctccaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaagaacataccaaatgagaaggagctagaatacactaccgacatgatatatgataatttcagcaactattctgcttggcacaaccgcagtgttcttctttctcatttgctgaaggaaaaagcaaaaggatattctcccaaggacaatgtatttacagaagagtacgagtttgtgcgtcatgctcttttcacagatccagatgatcaaagtgggtggttttatcatctgtggcttcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119931" stop="116753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119631" g_stop="119493" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="308" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="469" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117770" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="574" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117769" i_stop="117205" i_length="565">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117204" g_stop="117053" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="726" r_length="152" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E332426" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119631" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117770"/>
          <exon e_start="117204" e_stop="117053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAGGTATGGTGATATCTATTACTCATTCTTTTTGGTTCACTCTTGTTAAGATCTATTTCCTGAGTAGAAAAAGTTCTCTAGGTTCACATTGTTGTAAATATGCTGCTCTAGAGCAAAAACTAAAGTCACTAACATACTAAGAAGGCAGGAAGACAGTCGTACCCCTCGAAGAAAAAGTTATGTTACTTTTAACAAATGGAATATTAAAAATGTAGCTTTAGACAGGTCATTATCACATATGCATGCCCTTATCATGTGTTTCAAAAGTGTGTACAAGACTTCCTCTTTTGGCGTATTTGATGGACAGATTATACAACACTATGTGTCATAGCATGGCTCTAGTAAGCACATTAATATGAAAATTCTATTGGTTTAAGAGCCCTTACTTTCAATAACTGCGTTATTTTTTTATTGGCTCCCAGATGCACTCATCGTTTTAAAAATTAAAGTTATTAAGTATCACATACCATTTTAACTCAGGAAGAAGTCTCATTCTGATCTATATTCTACTGTGTTGTGTCTCTTATCTCTTCCAAAGGTTCATCTCCCCATAATGACTCGTATACAGTGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTTACAGAAGAGTACGAGTTTGTGCGTCATGCTCTTTTCACAGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTGTGGCTTCTTGATC</genome_strand>
        <mrna_strand>TGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTTACAGAAGAGTACGAGTTTGTGCGTCATGCTCTTTTCACAGATCCAGATGATCAAAGTGGGTGGTTTTATCATCTGTGGCTTCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E718555" ref_strand="+" ref_description="SGN-E718555 [FC05AA08]">
      <seq>aagctccaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaaaaactcaaattggtaaagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaagaacataccaaatgagaaggagctagaatacactaccgacatgatatatgataatttcagcaactattctgcttggcacaaccgcagtgttcttctttctcatttgctgaaggaaaaagcaaaaggatattctcccaaggacaatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119889" stop="116841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119589" g_stop="119493" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="266" r_length="169" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="427" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117770" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="532" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117769" i_stop="117205" i_length="565">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117204" g_stop="117141" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="596" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E718555" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119589" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117770"/>
          <exon e_start="117204" e_stop="117141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAGGTATGGTGATATCTATTACTCATTCTTTTTGGTTCACTCTTGTTAAGATCTATTTCCTGAGTAGAAAAAGTTCTCTAGGTTCACATTGTTGTAAATATGCTGCTCTAGAGCAAAAACTAAAGTCACTAACATACTAAGAAGGCAGGAAGACAGTCGTACCCCTCGAAGAAAAAGTTATGTTACTTTTAACAAATGGAATATTAAAAATGTAGCTTTAGACAGGTCATTATCACATATGCATGCCCTTATCATGTGTTTCAAAAGTGTGTACAAGACTTCCTCTTTTGGCGTATTTGATGGACAGATTATACAACACTATGTGTCATAGCATGGCTCTAGTAAGCACATTAATATGAAAATTCTATTGGTTTAAGAGCCCTTACTTTCAATAACTGCGTTATTTTTTTATTGGCTCCCAGATGCACTCATCGTTTTAAAAATTAAAGTTATTAAGTATCACATACCATTTTAACTCAGGAAGAAGTCTCATTCTGATCTATATTCTACTGTGTTGTGTCTCTTATCTCTTCCAAAGGTTCATCTCCCCATAATGACTCGTATACAGTGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTT</genome_strand>
        <mrna_strand>AAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAAAACTCAAATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339524" ref_strand="+" ref_description="SGN-E339524 [cTOE-16-O19]">
      <seq>agtcctctgtgtgtgtgtgagaaaaaaggaaaaaatgcacggaagaccacgcaaagctccaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaagaacataccaaatgagaaggagctagaatacactaccgacatgatatatgataatttcagcaactattctgcttggcacaaccgcagtgttcttctttctcatttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119942" stop="116884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119642" g_stop="119493" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="319" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="480" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117770" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="585" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117769" i_stop="117205" i_length="565">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.065" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117204" g_stop="117184" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="606" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E339524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119642" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117770"/>
          <exon e_start="117204" e_stop="117184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAGGTATGGTGATATCTATTACTCATTCTTTTTGGTTCACTCTTGTTAAGATCTATTTCCTGAGTAGAAAAAGTTCTCTAGGTTCACATTGTTGTAAATATGCTGCTCTAGAGCAAAAACTAAAGTCACTAACATACTAAGAAGGCAGGAAGACAGTCGTACCCCTCGAAGAAAAAGTTATGTTACTTTTAACAAATGGAATATTAAAAATGTAGCTTTAGACAGGTCATTATCACATATGCATGCCCTTATCATGTGTTTCAAAAGTGTGTACAAGACTTCCTCTTTTGGCGTATTTGATGGACAGATTATACAACACTATGTGTCATAGCATGGCTCTAGTAAGCACATTAATATGAAAATTCTATTGGTTTAAGAGCCCTTACTTTCAATAACTGCGTTATTTTTTTATTGGCTCCCAGATGCACTCATCGTTTTAAAAATTAAAGTTATTAAGTATCACATACCATTTTAACTCAGGAAGAAGTCTCATTCTGATCTATATTCTACTGTGTTGTGTCTCTTATCTCTTCCAAAGGTTCATCTCCCCATAATGACTCGTATACAGTGTTCTTCTTTCTCATTTGCT</genome_strand>
        <mrna_strand>AGTCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTTCTTTCTCATTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E313157" ref_strand="+" ref_description="SGN-E313157 [cTOA-18-K8]">
      <seq>tccaactctagaagagcaagaagcttttagtgtcaaagcgtccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaagaacataccaaatgagaaggagctagaatacactaccgacatgatatatgataatttcagcaactattctgcttggcacaaccgcagtgttcttctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119885" stop="117456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119585" g_stop="119493" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="262" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="423" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117770" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="528" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E313157" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119585" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG</genome_strand>
        <mrna_strand>TCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCGTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300317" ref_strand="+" ref_description="SGN-E300317 [cLEW-17-K24]">
      <seq>ttctgagtcctctgtgtgtgtgtgagaaaaaaggaaaaaatgcacggaagaccacgcctggcttcaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaagaacataccaaatgagaaggagctagaatacactaccgacatgatatatgataatttcagcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119947" stop="117492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119647" g_stop="119493" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="324" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="485" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117792" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="568" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E300317" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119647" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAGTCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACT</genome_strand>
        <mrna_strand>TTCTGAGTCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCCTGGCTTCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E365387" ref_strand="+" ref_description="SGN-E365387 [cLPT-2-P24]">
      <seq>ctgagtcctctctgtgtgtgtgcgaaaaaaaggaaaaaatgcacggaagaccacgcaaagctccaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaatcctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagtctgttaagtcaattctcgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagacaaggaattgttgcttctgggtaagttccagaaggcagactcccgcaattttcatgcatggaattatagaaggttcgtcacaacattgaaggacataccaaatgagaaggagctagaatacactaccgacatgatatatgataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119945" stop="117502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119645" g_stop="119493" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="323" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="117954" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="484" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79">
            <donor d_prob="0.142" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117874" g_stop="117802" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="557" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E365387" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119645" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="117954"/>
          <exon e_start="117874" e_stop="117802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTCCTCTGTGTGTGTGTGAG-AAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAGGTGATGACCTGGATTAAGCTGAACGCAAATTACTGGACTGTTGCATTCTGCTAACACTTCTTTTTGGCAACTCTTTCAGGTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAAT</genome_strand>
        <mrna_strand>CTGAGTCCTCTCTGTGTGTGTGCGAAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAATCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGTCTGTTAAGTCAATTCTCGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG...............................................................................GTTCGTCACAACATTGAAGGACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E309536" ref_strand="+" ref_description="SGN-E309536 [cTOA-3-G7]">
      <seq>tctgtgtgtgtgtgagaaaaaaggaaaaaatgcacggaagaccacgcaaagctgcaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttgatgaagaactcagattggtagagaatgcgttgaggaggaatttcaagtcttacggagcatggcatcaccgtaaatgggtgctgagcaaaggtcattcttccacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119937" stop="117725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119637" g_stop="119493" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119232" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="314" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118114" g_stop="118025" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="404" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E309536" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119637" e_stop="119493"/>
          <exon e_start="119400" e_stop="119232"/>
          <exon e_start="118114" e_stop="118025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTGGTAAGTTGTTTTTTTTTTTTGGATAAAAATGATATCTTTCTAAATGGGTCGGATTGAATATTGAGGATTTATGTTTAGTATATTCTTGATGGGAGGTTTTGTGGGAAGAGAAAGAAATGCTCAATTTTCTATTCTTTAAAGGGGCTGTTTGTTCTTTTTCTTTTTTTCTCTGCCCACCCCTTTGCCTTTTCTGATAAATCCTGTGCTCAAGTCCAAAAAGATTCTAAGCTGGTTTTTGACATATTTTCTCTTGTTATGAATGATGTTATATGGTATTGCTTTGAAGTGTGTTGATAACAATCCTTAGACAAAACCTAATGTGGCTCTTTTGTCTGACTGAGTAAGAAGGATTGGGCCCCTTATAGGACGGAATAGCTATAGAAGATTTGTACTTGACTATGAATCTTCTACCAAATGGATCTGCATCGAATGTGTAATGAAACTTCAAGTATATTTTCACTTATTATGCTGTTGTGCTCTGTGTTGTCAAAGGAGCACTCAACTCCTGAAGCAAGGTGCAAAACTTGTTGGTGCTTTAGTGTCGTCATCCAGGCTCTAAGACATACTTTACCTTGCCAATGAGTGTAATCCCGAAGAGCCGACATGCACCCAAGGGTGTGGCAGTGATCAATGAACTAGTTGAGAGTCATGAGGATCAATTCCCACGGGAGACCAAAAATACTAGGTAATTTTTCCCATATGTGCTGGTGGGAGGTGGCAGGTATCCCGTGGAATTTAAATGAGGTGAGCAAAAACTGGCCTGGACACCACAGTCATAAAAAAAATCCTGAATAGGCAACGCTGAACAATTGATATTTCACTTTATCCTGATCTTTTCTTGATTTTTGTTGTCCATAAATTTGTTATTCACAATCATACTTATAATTAGTAGTCTTGAACTACACATATATATTTGCATTTTTTTCTCCATTTGTGTCTTTCTCCATTAAAGGCCTGGCTTGAAACCCCAACAGACCTTTAGATTTTTTGTTTGTTGTTCGCCTTTGATACCTCTGTTCTTAGTTGGTTTAACTAAGAACAAAGCTTGTTATCATCACCAATTAATTTTCTGTGTGGTTTTATCTGTGATTCAGCTAAAATTTTGCATGTTGATTAGGTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGAC</genome_strand>
        <mrna_strand>TCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTGCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337957" ref_strand="+" ref_description="SGN-E337957 [cTOE-14-E1]">
      <seq>aggaaaaaatgcacggaagaccacgcaaagctccaactctagaagagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagagtcgaaccctgagtattatactgcttggaattatagaaaacttgctgtccagcataatttgaatctacctgaggtggagaacaatgaggagactgttaagtcaattcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119916" stop="118948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119616" g_stop="119493" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119248" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="277" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E337957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119616" e_stop="119493"/>
          <exon e_start="119400" e_stop="119248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGA</genome_strand>
        <mrna_strand>AGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339694" ref_strand="+" ref_description="SGN-E339694 [cTOE-16-O9]">
      <seq>tcctctgtgtgtgtgtgagaaaaaaggaaaaaatgcacggaagaccacgcaaagctccaactatagaaaagcaagaagcttttagtgtcaaagcttccaaattacggtctctacaatcacaatttctccaatttcatcacgccaaaatatatacaaaggaagctttagatgtaagtgcaaagttgttagaatcgaaccctgagtattatactgcttggaattatagaaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="119940" stop="119015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119640" g_stop="119493" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119400" g_stop="119315" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="234" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E339694" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119640" e_stop="119493"/>
          <exon e_start="119400" e_stop="119315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAATGTAATTTTTTTAAATTTTTTGTGTTCTTGATTTTACAGAAAAGATCAAAAATTTTGATGTTGTTTGCTAATTTGTTTGTGGGGTTGTTTCAGATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTG</genome_strand>
        <mrna_strand>TCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTATAGAAAAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT............................................................................................ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAATCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548986" ref_strand="+" ref_description="SGN-E548986 [TUS-66-E1](-)">
      <seq>cgacaaccttcatgtgctatagatgcagatcaaggacgacatacaaacatggaggcagaaatatcttaaaacatgttcgttttgcaggattagctatatcagatggtgggaaggacagttttagattatagagaatacataggccgctcaaaaaaaattcgcgagttggttaagcttttcattggaacatccagattgaaagagttgttgacggcgtgctttcgccagagtgttataacttttatagttactagtacatgccaaatgtgtggtgtagttgcacagtctcaggtgcatgaatcagtcttgacattacttggtttacttcatttgcttgaacatttgatgaggtaacctcatgatcctttggacaaaacccttgtgtactcataagttacgaatcgaggatttaaactctatgagttcaacttttaaggtttttaacattgaacatagtatgttattacagcggaagtacgcaatctacatccgccactgtcatttactattattttcttcggttttatgttttaaccaatcgttttgtctactttggttatcgtattatctattgatttgaggatttgttggacgcatcctcttttcctttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="122415" stop="121050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122115" g_stop="121762" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121761" i_stop="121614" i_length="148">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121613" g_stop="121349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="615" r_length="265" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E548986" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122115" e_stop="121762"/>
          <exon e_start="121613" e_stop="121349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTACCAGTCTTTTACTTCATTTTGTTCATCTGTTTCATCTTTTTTATGTTTAATTTATTTGAATCCCACATTCCAGGTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACCAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTCAAG</genome_strand>
        <mrna_strand>CGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGT-GG--GAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTC-AAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAG....................................................................................................................................................GTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACGAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544095" ref_strand="+" ref_description="SGN-E544095 [TUS-66-E1]">
      <seq>cgacaaccttcatgtgctatagatgcagatcaaggacgacatacaaacatggaggcagaaatatcttaaaacatgttcgttttgcaggattagctatatcagatggtgggaaggacagttttagattatagagaatacataggccgctcaaaaaaaattcgcgagttggttaagcttttcattggaacatccagattgaaagagttgttgacggcgtgctttcgccagagtgttataacttttatagttactagtacatgccaaatgtgtggtgtagttgcacagtctcaggtgcatgaatcagtcttgacattacttggtttacttcatttgcttgaacatttgatgaggtaacctcatgatcctttggacaaaacccttgtgtactcataagttacgaatcgaggatttaaactctatgagttcaacttttaaggtttttaacattgaacatagtatgttattacagcggaagtacgcaatctacatccgccactgtcatttactattattttcttcggttttatgttttaaccaatcgttttgtctactttggttatcgtattatctattgatttgaggatttgttggacgcatcctcttttccttttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="122415" stop="121050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122115" g_stop="121762" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121761" i_stop="121614" i_length="148">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121613" g_stop="121349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="615" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E544095" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122115" e_stop="121762"/>
          <exon e_start="121613" e_stop="121349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTACCAGTCTTTTACTTCATTTTGTTCATCTGTTTCATCTTTTTTATGTTTAATTTATTTGAATCCCACATTCCAGGTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACCAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTCAAG</genome_strand>
        <mrna_strand>CGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGT-GG--GAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTC-AAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAG....................................................................................................................................................GTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACGAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303655" ref_strand="+" ref_description="SGN-E303655 [cLEY-6-K5]">
      <seq>gacaaccttcatgtgctatagatgcagatcaaggacgacatacaaacatggaggcagaaatatcttaaaacatgttcgttttgcaggattagctatatcagatggtgggaaggacagttttagattatagagaatacataggccgctcaaaaaaaattcgcgagttggttaagcttttcattggaacatccagattgaaagagttgttgacggcgtgctttcgccagagtgttataacttttatagttactagtacatgccaaatgtgtggtgtagttgcacagtctcaggtgcatgaatcagtcttgacattacttggtttacttcatttgcttgaacatttgatgaggtaacctcatgatcctttggacaaaacccttgtgtactcataagttacgaatcgaggatttaaactctatgagttcaacttttaaggtttttaacattgaacatagtatgttattacagcggaagtacgcaatctacatccgccactgtcatttactattattttcttcgggtntatgttttaaccaatcgttttgtctactttggttatcngattatctattgatttgaggatttgttggacgcatcctcttttccttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="122414" stop="121050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122114" g_stop="121762" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121761" i_stop="121614" i_length="148">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121613" g_stop="121349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="614" r_length="265" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E303655" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122114" e_stop="121762"/>
          <exon e_start="121613" e_stop="121349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTACCAGTCTTTTACTTCATTTTGTTCATCTGTTTCATCTTTTTTATGTTTAATTTATTTGAATCCCACATTCCAGGTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACCAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTCAAG</genome_strand>
        <mrna_strand>GACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGT-GG--GAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTC-AAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAG....................................................................................................................................................GTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACGAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGGTNTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCNGATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303610" ref_strand="+" ref_description="SGN-E303610 [cLEY-6-K5](-)">
      <seq>cttaaaacatgttcgttttgcaggattagctatatcagatggtgggaaggacagttttagattatagagaatacataggccgctcaaaaaaaattcgcgagttggttaagcttttcattggaacatccagattgaaagagttgttgacggcgtgctttcgccagagtgttataacttttatagttactagtacatgccaaatgtgtggtgtagttgcacagtctcaggtgcatgaatcagtcttgacattacttggtttacttcatttgcttgaacatttgatgaggtaacctcatgatcctttggacaaaacccttgtgtactcataagttacgaatcgaggatttaaactctatgagttcaacttttaaggtttttaacattgaacatagtatgttattacagcggaagtacgcaatctacatccgccactgtcatttactattattttcttcggttttatgttttaaccaatcgttttgtctactttggttatcgtattatctattgatttgaggatttgttggacgcatcctcttttccttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="122351" stop="121050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122051" g_stop="121762" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121761" i_stop="121614" i_length="148">
            <donor d_prob="0.852" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121613" g_stop="121349" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="551" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E303610" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122051" e_stop="121762"/>
          <exon e_start="121613" e_stop="121349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTACCAGTCTTTTACTTCATTTTGTTCATCTGTTTCATCTTTTTTATGTTTAATTTATTTGAATCCCACATTCCAGGTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACCAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTCAAG</genome_strand>
        <mrna_strand>CTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGT-GG--GAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTC-AAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAG....................................................................................................................................................GTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACGAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747440" ref_strand="+" ref_description="SGN-E747440 [GI|41058335]">
      <seq>atcccacaatatgaatgcgagaggtatgactccgaaagcaaaattatatcatttacatgtactgttgacgtagggggaatgaaatatattggagcagcagctagaacgaagaaggaagcagagatcaaagctgctcgaactgcattgttggctgttcagtctagcggttttgcgcctaattattcttcatacactgtcgttccaatgaagaaggtcacagatttggcaatcagcaatcaggagagtgcagcagctctgaaaccaaagaaacacagattcaagaaaaagcagacaaggaatttttcagatgtcagttatcatgtacgcacaaagatttttggtgactcggaagttcagatggtaaatcaagctaaaccagagatgcatgaaaatgctgctgtgatgactccaggtacaggatctggacctgcaccttttgcaggcactatgggtgatctagttccatccaacaatttgagttctgattatggaacttcaaatattggaatcaactctcagtgtggtggaggagtaacgactgagggaaatgccgttattggagttgattatggaacttcaaaaattggaatcaactctcagtgtggtggaggagtaacgactgagggaaatgccgttattggagttgagcaggtaacttcagaggtggcaccagttgcttggaacgacaatcttcatgtacaggacctgcaccttttgcatgaaaatgctgctgtgatgactcaaggtacaggatccggacctgcaccttttgcaggcactatgggtgatctagttccatccaacaattgtggttctgattatggaacttcaaaccttggaatcaactctcagtgtggtgaaggagctacaaccgagggaaatgccggtattggagttgagcaggtaacttcagaggtggcaccagttgcttgtaacgacaaccttcatgtgctatagatgcagatcaaggacgacatacaaacatggaggcagaaatatcttaaaacatgttcgttttgcaggattagctatatcagatggtgggaaggacagttttagattatagagaatacataggccgctcaaaaaaaaattcgcgagttggttaagcttttcattggaacatccagattgaaagagttgttgacggcgtgtttcgccagagtgttataacttttatagttactagtacatgccaaatgtgtggtgtagttgcacagtctcaggtgcatgaatcagtcttgacattacttggtttacttcatttgcttgaacatttgatgaggtaacctgttctatgacaatatttaagtatttatgctgttatttacaattggaagaagtaacatattagcagttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="-" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="123350" stop="121387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123050" g_stop="121680" g_length="1371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1367" r_length="1367" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="-" ref_id="SGN-E747440" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1371</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123050" e_stop="121680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCACAATATGAATGCGAGAGGTATGACTCCGAAAGCAAAATTATATCATTTACATGTACTGTTGACGTAGGGGGAATGAAATATATTGGAGCAGCAGCTAGAACGAAGAAGGAAGCAGAGATCAAAGCTGCTCGAACTGCATTGTTGGCTGTTCAGTCTAGCGGTTTTGCGCCTAATTATTCTTCATACACTGTCGTTCCAATGAAGAAGGTCACAGATTTGGCAATCAGCAATCAGGAGAGTGCAGCAGCTCTGAAACCAAAGAAACACAGATTCAAGAAAAAGCAGACAAGGAATTTTTCAGATGTCAGTTATCATGTACGCACAAAGATTTTTGGTGACTCGGAAGTTCAGATGGTAAATCAAGCTAAACCAGAGATGCATGAAAATGCTGCTGTGATGACTCCAGGTACAGGATCTGGACCTGCACCTTTTGCAGGCACTATGGGTGATCTAGTTCCATCCAACAATTTGAGTTCTGATTATGGAACTTCAAATATTGGAATCAACTCTCAGTGTGGTGGAGGAGTAACGACTGAGGGAAATGCCGTTATTGGAGTTGATTATGGAACTTCAAAAATTGGAATCAACTCTCAGTGTGGTGGAGGAGTAACGACTGAGGGAAATGCCGTTATTGGAGTTGAGCAGGTAACTTTAGAGGTGGCACCAGTTGCTTGGAACGACAATCTTCATGTACAGGACCTGCACCTTTTGCATGAAAATGCTGCTGTGATGACTCAAGGTACAGGATCCGGACCTGCACCTTTTGCAGGCACTATGGGTGATCTAGTTCCATCCAACAATTGTGGTTCTGATTATGGAACTTCAAACCTTGGAATCAACTCTCAGTGTGGTGAAGGAGCTACAACCGAGGGAAATGCCGGTATTGGAGTTGAGCAGGTAACTTCAGAGGTGGCACCAGTTGCTTGTAACGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTACCAGTCT</genome_strand>
        <mrna_strand>ATCCCACAATATGAATGCGAGAGGTATGACTCCGAAAGCAAAATTATATCATTTACATGTACTGTTGACGTAGGGGGAATGAAATATATTGGAGCAGCAGCTAGAACGAAGAAGGAAGCAGAGATCAAAGCTGCTCGAACTGCATTGTTGGCTGTTCAGTCTAGCGGTTTTGCGCCTAATTATTCTTCATACACTGTCGTTCCAATGAAGAAGGTCACAGATTTGGCAATCAGCAATCAGGAGAGTGCAGCAGCTCTGAAACCAAAGAAACACAGATTCAAGAAAAAGCAGACAAGGAATTTTTCAGATGTCAGTTATCATGTACGCACAAAGATTTTTGGTGACTCGGAAGTTCAGATGGTAAATCAAGCTAAACCAGAGATGCATGAAAATGCTGCTGTGATGACTCCAGGTACAGGATCTGGACCTGCACCTTTTGCAGGCACTATGGGTGATCTAGTTCCATCCAACAATTTGAGTTCTGATTATGGAACTTCAAATATTGGAATCAACTCTCAGTGTGGTGGAGGAGTAACGACTGAGGGAAATGCCGTTATTGGAGTTGATTATGGAACTTCAAAAATTGGAATCAACTCTCAGTGTGGTGGAGGAGTAACGACTGAGGGAAATGCCGTTATTGGAGTTGAGCAGGTAACTTCAGAGGTGGCACCAGTTGCTTGGAACGACAATCTTCATGTACAGGACCTGCACCTTTTGCATGAAAATGCTGCTGTGATGACTCAAGGTACAGGATCCGGACCTGCACCTTTTGCAGGCACTATGGGTGATCTAGTTCCATCCAACAATTGTGGTTCTGATTATGGAACTTCAAACCTTGGAATCAACTCTCAGTGTGGTGAAGGAGCTACAACCGAGGGAAATGCCGGTATTGGAGTTGAGCAGGTAACTTCAGAGGTGGCACCAGTTGCTTGTAACGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGT-GG--GAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTG-TTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E332332" ref_strand="+" ref_description="SGN-E332332 [cTOD-17-B18]">
      <seq>gaacttgaaatattttctcctcatcttccactttaaccttcaaatttccagcaacattcaagcacaccctccaaccctaaaacccccaaatatactttggttaaaaattgaactttttttcatctgggtattcatatagatgtgcatattcacacacccacttgccttatttggttaaaaattgaattttttttcatctgggattcatattcatgtgcataatacacacccacaatccctatttggctaaaagtttgattttttttcttttgggattttttgtttttttggttaaagaatagtcatagtgaatctttttatctgtgtatacatatagaatgatcatatttacacacccactagccctatttggctaaaggttggagcttttgggattatcattttgtagttttggttaaaggaatagttcaggttgatttaatttttttttatctgtgtatacatatacatgttcatattcacatatccactagcgctgtttggctaaaaattggatcttttttgggaacttttgtgtttttggttaggtatagttcatattgaatctttttatctgtgtatacatatagatctgcattgccatattcacacacccactagtccctatttggctaaaagtttaagtttttgggaatttttgtttagtgataggttggattggattcttgttaagaactcagatgtnaagaatggaggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0129D14-J8ZjL/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0129D14.1" temp_strand="+" temp_description="C04SLm0129D14.1  CU041360.9 htgs_phase:3 submitted_to_sgn_as:C04SLm0129D14 sequenced_by:sanger upload_account_name:uk">
        <position start="126747" stop="128068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127047" g_stop="127768" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0129D14.1" gen_strand="+" ref_id="SGN-E332332" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0129D14.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127047" e_stop="127768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTGAAATATTTTCTCCTCATCTTCCACTTTAACCTTCAAATTTCCAGCAACATTCAAGCACACCCTCCAACCCTAAAACCCCCAAATATACTTTGGTTAAAAATTGAACTTTTTTTCATCTGGGTATTCATATAGATGTGCATATTCACACACCCACTTGCCTTATTTGGTTAAAAATTGAATTTTTTTTTCATCTGGGATTCATATTCATGTGCATAATACACACCCACAATCCCTATTTGGCTAAAAGTTTGATTTTTTTTCTTTTGGGATTTTTTGTTTTTTTGGTTAAAGAATAGTCATAGTGAATCTTTTTATCTGTGTATACATATAGAATGATCATATTTACACACCCACTAGCCCTATTTGGCTAAAGGTTGGAGCTTTTGGGATTATCATTTTGTAGTTTTGGTTAAAGGAATAGTTCAGGTTGATTTAATTTTTTTTTATCTGTGTATACATATACATGTTCATATTCACATATCCACTAGCGCTGTTTGGCTAAAAATTGGATCTTTTTTGGGAACTTTTGTGTTTTTGGTTAGGTATAGTTCATATTGAATCTTTTTATCTGTGTATACATATAGATCTGCATTGCCATATTCACACACCCACTAGTCCCTATTTGGCTAAAAGTTTAAGTTTTTGGGAATTTTTGTTTAGTGATAGGTTGGATTGGATTCTTGTTAAGAACTCAGATGTAAAGAATGGAGGAATC</genome_strand>
        <mrna_strand>GAACTTGAAATATTTTCTCCTCATCTTCCACTTTAACCTTCAAATTTCCAGCAACATTCAAGCACACCCTCCAACCCTAAAACCCCCAAATATACTTTGGTTAAAAATTGAACTTTTTTTCATCTGGGTATTCATATAGATGTGCATATTCACACACCCACTTGCCTTATTTGGTTAAAAATTGAA-TTTTTTTTCATCTGGGATTCATATTCATGTGCATAATACACACCCACAATCCCTATTTGGCTAAAAGTTTGATTTTTTTTCTTTTGGGATTTTTTGTTTTTTTGGTTAAAGAATAGTCATAGTGAATCTTTTTATCTGTGTATACATATAGAATGATCATATTTACACACCCACTAGCCCTATTTGGCTAAAGGTTGGAGCTTTTGGGATTATCATTTTGTAGTTTTGGTTAAAGGAATAGTTCAGGTTGATTTAATTTTTTTTTATCTGTGTATACATATACATGTTCATATTCACATATCCACTAGCGCTGTTTGGCTAAAAATTGGATCTTTTTTGGGAACTTTTGTGTTTTTGGTTAGGTATAGTTCATATTGAATCTTTTTATCTGTGTATACATATAGATCTGCATTGCCATATTCACACACCCACTAGTCCCTATTTGGCTAAAAGTTTAAGTTTTTGGGAATTTTTGTTTAGTGATAGGTTGGATTGGATTCTTGTTAAGAACTCAGATGTNAAGAATGGAGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>62</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13861" PGL_stop="15519"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13861" e_stop="13901"/>
            <exon e_start="13991" e_stop="14540"/>
            <exon e_start="14858" e_stop="15519"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.541" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.612" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13861" e_stop="13901" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.541">
            <gDNA_intron_boundary i_start="13902" i_stop="13990" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13991" e_stop="14540" e_length="550"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.612">
            <gDNA_intron_boundary i_start="14541" i_stop="14857" i_length="317"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="14858" e_stop="15519" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="13901"/>
              <exon start="13991" stop="14527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13861" stop="13901"/>
              <exon start="13991" stop="14527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13862" stop="13901"/>
              <exon start="13991" stop="14516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13863" stop="13901"/>
              <exon start="13991" stop="14466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13894" stop="13901"/>
              <exon start="13991" stop="14486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13894" stop="13901"/>
              <exon start="13991" stop="14332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13994" stop="14540"/>
              <exon start="14858" stop="15176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13994" stop="14540"/>
              <exon start="14858" stop="15113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14482" stop="14540"/>
              <exon start="14858" stop="15519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577692" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGTAGAATGAGAGAATTTCACAATATCAAGATTAGCCAG : GTTGAGTTACTTGTTACATATGAAGGATTAAGATTTGCTGTGAGTGATTTGAGATTGCTGATGGATACATTCCATCGTGTTGAATTTACGGGAACCTGGCGGAGGCTATTCTCAAGAGTCAAGAAGCACATCATCTGGGGAGTCCTAAAATCTGTGACAGGAATGCAGGGAAAGAAGTTTAAAGATAAAGCACATAGTCATAAGGAAACTTGTGCTCCTGGCGTTCCTGATATTGATCTTAATCTCAGTGATAGTGATGGTGGTTCAGCTGGAAAATCCGAGCAAAATCCTTTATCCTGGCCTAAGCGTCCCGCTGAGGGTGCAGGTGATGGTTTTGTCACCTCTATAAAAGGCCTTTTCAATTCACAGCGTCGGAAGGCCAAGGCTTTCGTGCTTCGAACAATGAGGGGTGAAGCAGAAAATGAGATTACTGGTGATTGGAGTGAAAGTGAGGGAGATTTCTCTCCATTTGCTAGACAACTAACCATAACAAAAGCCAAGAAGCTGATTAGACGGCATACAAAGAAGTTCCGTTCAAGAGCACCAAAAG : GTTTATCTTCTCAACAAAGAGAATCACTTCCTTCGTCACCAAGAGAGACCACCCCATTTGAAAGTGATTCATCTAGTGAATCTTCGCCTTATGAGGATTTCCACGAGTAGATGAGCTTGAAGACATTGAAACGACGTGTGTTATGGGATCCAAAATGGACTGGAGCAATCGTTGGTCATATATAATAGTCCGGTACGATAGCAATTCCAATTGATTAGGATTTGGTGACATCCTTGTCTCCTACTTAGACAGTATGAGATGCTCTTCCAAAATCCTTTGGCAAGAATTGCGAGAAAATGCTGAAAGAAGTCTACAATTAATAACATTTCATTGCCTTCTTAGAGCTCTGGACTTATCCTGGAAATCGAGCAAAGGTGAGTCCCTGTTGTTGCAGTCAATTCTTTTCTTCTTTATCCTTGTATTTATTGTATTACCCACTACAAACAACATTAGGACTTGTAAAAGTCCATAAGTTTTGTAACTACATATCTATCTTTAGCGAGAGAGAAAAGGTTTATAGTTTCTACTACATGTACAGTAGACACAGAGTAGAATTAGAATGTGTTCCCTGAAAAAGAAAAATCTGGATTGTAACAGTGAGGAGATAAAATGGAAACGGAAGTCCCAACTCTTCAGTCTCATTATCAAAGTAAAGAAATAGT</gDNA_template>
            <first_frame> L  V  E  *  E  N  F  T  I  S  R  L  A  R :   L  S  Y  L  L  H  M  K  D  *  D  L  L  *  V  I  *  D  C  *  W  I  H  S  I  V  L  N  L  R  E  P  G  G  G  Y  S  Q  E  S  R  S  T  S  S  G  E  S  *  N  L  *  Q  E  C  R  E  R  S  L  K  I  K  H  I  V  I  R  K  L  V  L  L  A  F  L  I  L  I  L  I  S  V  I  V  M  V  V  Q  L  E  N  P  S  K  I  L  Y  P  G  L  S  V  P  L  R  V  Q  V  M  V  L  S  P  L  *  K  A  F  S  I  H  S  V  G  R  P  R  L  S  C  F  E  Q  *  G  V  K  Q  K  M  R  L  L  V  I  G  V  K  V  R  E  I  S  L  H  L  L  D  N  *  P  *  Q  K  P  R  S  *  L  D  G  I  Q  R  S  S  V  Q  E  H  Q  K  :  V  Y  L  L  N  K  E  N  H  F  L  R  H  Q  E  R  P  P  H  L  K  V  I  H  L  V  N  L  R  L  M  R  I  S  T  S  R  *  A  *  R  H  *  N  D  V  C  Y  G  I  Q  N  G  L  E  Q  S  L  V  I  Y  N  S  P  V  R  *  Q  F  Q  L  I  R  I  W  *  H  P  C  L  L  L  R  Q  Y  E  M  L  F  Q  N  P  L  A  R  I  A  R  K  C  *  K  K  S  T  I  N  N  I  S  L  P  S  *  S  S  G  L  I  L  E  I  E  Q  R  *  V  P  V  V  A  V  N  S  F  L  L  Y  P  C  I  Y  C  I  T  H  Y  K  Q  H  *  D  L  *  K  S  I  S  F  V  T  T  Y  L  S  L  A  R  E  K  R  F  I  V  S  T  T  C  T  V  D  T  E  *  N  *  N  V  F  P  E  K  E  K  S  G  L  *  Q  *  G  D  K  M  E  T  E  V  P  T  L  Q  S  H  Y  Q  S  K  E  I   </first_frame>
            <second_frame>  S  *  N  E  R  I  S  Q  Y  Q  D  *  P   : G  *  V  T  C  Y  I  *  R  I  K  I  C  C  E  *  F  E  I  A  D  G  Y  I  P  S  C  *  I  Y  G  N  L  A  E  A  I  L  K  S  Q  E  A  H  H  L  G  S  P  K  I  C  D  R  N  A  G  K  E  V  *  R  *  S  T  *  S  *  G  N  L  C  S  W  R  S  *  Y  *  S  *  S  Q  *  *  *  W  W  F  S  W  K  I  R  A  K  S  F  I  L  A  *  A  S  R  *  G  C  R  *  W  F  C  H  L  Y  K  R  P  F  Q  F  T  A  S  E  G  Q  G  F  R  A  S  N  N  E  G  *  S  R  K  *  D  Y  W  *  L  E  *  K  *  G  R  F  L  S  I  C  *  T  T  N  H  N  K  S  Q  E  A  D  *  T  A  Y  K  E  V  P  F  K  S  T  K  R :   F  I  F  S  T  K  R  I  T  S  F  V  T  K  R  D  H  P  I  *  K  *  F  I  *  *  I  F  A  L  *  G  F  P  R  V  D  E  L  E  D  I  E  T  T  C  V  M  G  S  K  M  D  W  S  N  R  W  S  Y  I  I  V  R  Y  D  S  N  S  N  *  L  G  F  G  D  I  L  V  S  Y  L  D  S  M  R  C  S  S  K  I  L  W  Q  E  L  R  E  N  A  E  R  S  L  Q  L  I  T  F  H  C  L  L  R  A  L  D  L  S  W  K  S  S  K  G  E  S  L  L  L  Q  S  I  L  F  F  F  I  L  V  F  I  V  L  P  T  T  N  N  I  R  T  C  K  S  P  *  V  L  *  L  H  I  Y  L  *  R  E  R  K  G  L  *  F  L  L  H  V  Q  *  T  Q  S  R  I  R  M  C  S  L  K  K  K  N  L  D  C  N  S  E  E  I  K  W  K  R  K  S  Q  L  F  S  L  I  I  K  V  K  K  *  </second_frame>
            <third_frame>   R  R  M  R  E  F  H  N  I  K  I  S  Q  :  V  E  L  L  V  T  Y  E  G  L  R  F  A  V  S  D  L  R  L  L  M  D  T  F  H  R  V  E  F  T  G  T  W  R  R  L  F  S  R  V  K  K  H  I  I  W  G  V  L  K  S  V  T  G  M  Q  G  K  K  F  K  D  K  A  H  S  H  K  E  T  C  A  P  G  V  P  D  I  D  L  N  L  S  D  S  D  G  G  S  A  G  K  S  E  Q  N  P  L  S  W  P  K  R  P  A  E  G  A  G  D  G  F  V  T  S  I  K  G  L  F  N  S  Q  R  R  K  A  K  A  F  V  L  R  T  M  R  G  E  A  E  N  E  I  T  G  D  W  S  E  S  E  G  D  F  S  P  F  A  R  Q  L  T  I  T  K  A  K  K  L  I  R  R  H  T  K  K  F  R  S  R  A  P  K   : G  L  S  S  Q  Q  R  E  S  L  P  S  S  P  R  E  T  T  P  F  E  S  D  S  S  S  E  S  S  P  Y  E  D  F  H  E  *  M  S  L  K  T  L  K  R  R  V  L  W  D  P  K  W  T  G  A  I  V  G  H  I  *  *  S  G  T  I  A  I  P  I  D  *  D  L  V  T  S  L  S  P  T  *  T  V  *  D  A  L  P  K  S  F  G  K  N  C  E  K  M  L  K  E  V  Y  N  *  *  H  F  I  A  F  L  E  L  W  T  Y  P  G  N  R  A  K  V  S  P  C  C  C  S  Q  F  F  S  S  L  S  L  Y  L  L  Y  Y  P  L  Q  T  T  L  G  L  V  K  V  H  K  F  C  N  Y  I  S  I  F  S  E  R  E  K  V  Y  S  F  Y  Y  M  Y  S  R  H  R  V  E  L  E  C  V  P  *  K  R  K  I  W  I  V  T  V  R  R  *  N  G  N  G  S  P  N  S  S  V  S  L  S  K  *  R  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13863" stop="13901"/>
                    <exon start="13991" stop="14540"/>
                    <exon start="14858" stop="14967"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMREFHNIKISQVELLVTYEGLRFAVSDLRLLMDTFHRVEFTGTWRRLFSRVKKHIIWGVLKSVTGMQGKKFKDKAHSHKETCAPGVPDIDLNLSDSDGGSAGKSEQNPLSWPKRPAEGAGDGFVTSIKGLFNSQRRKAKAFVLRTMRGEAENEITGDWSESEGDFSPFARQLTITKAKKLIRRHTKKFRSRAPKGLSSQQRESLPSSPRETTPFESDSSSESSPYEDFHE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15072" stop="15329"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFGDILVSYLDSMRCSSKILWQELRENAERSLQLITFHCLLRALDLSWKSSKGESLLLQSILFFFILVFIVLPTTNNIRTCKSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18124" PGL_stop="17036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18124" e_stop="18120"/>
            <exon e_start="18045" e_stop="17036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.816" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18124" e_stop="18120" e_length="5"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.816">
            <gDNA_intron_boundary i_start="18119" i_stop="18046" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="18045" e_stop="17036" e_length="1010"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18124" stop="18120"/>
              <exon start="18045" stop="17755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17827" stop="17036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTA : GTTGACTGCCTGTAAATTGTTGTTGTAACATACCCACTTGAAGTTAACATTTCCTTTCTGGAGAGACGCTACTATTTCAAACTGACCCTGTTAAATTTGGGATGGTTGCTGTTGATGTGTGAAATTTGATGCCTGTAGATGAGTAAGTAAATATTATTGGTGCCTAACCAATCCATACAAAGTGATTAACTGTGTCCTGTTCATTGCAAGCTAGTTGGTGGTTTGTGTATATATGTGCTGTATATATTGTAACAGCTTGCTTAATACTAATAAGGTGTGTTTGCGTTTCCAGCTTCTCTGTGGACGAGCATGATTTTGACCCAGGTTTTTTATACCATTATTACGCCCCATACAAAATGGATTTTACTTATCTGTGTAAACATAGAAAATGACTAACCAAATACTTACAATTAATGCTGAATTTTGTACAAATATCAATTAACTAGACACCTTTTTTAAGCTAAAAGACCTAAAGGGATTACTCAATAGTTTTATATGCCAAAAGTGGTTGTCAGAGGTAGGATGTGTGACCGTCAATTTTTCTCTGATGGACTTCAGCGGTTGTTTGCTCATTTTTTTCTTCACGGAATTTGCAGTTGCTATTAGGAATTTATTTTCTTTAATTTAAGAAATAGTTTAGTAACAGTTTGCAACAAATGATTAACAGAGAGACTTGAACTAAAATGGAAACTCATGGAGGGACGTTGGACGTATGCAAGTAGAACACGCACTTATACTCCCCTTTTTATAAATAATAAATATTGGATAAAACTTATCCTTATCAGGTGTTCACGACAATCCAATATATGTATGTCATGTGTTTAATTTGATAGTTTATTTTATTTAACCTTAATTAATTAACATGTGGTAACTTTAGAAAAGAATAAAATATTTTATAGTAGAGTATAGTGCTATCTTCTAATTGTAGAGTATCATTTCTCCCGACACTTTTTTCAAAAATAAGAAAAAATTACATAAATCAATATATTTCAAAAAATAATTACTGATTT</gDNA_template>
            <first_frame> D  * :   L  T  A  C  K  L  L  L  *  H  T  H  L  K  L  T  F  P  F  W  R  D  A  T  I  S  N  *  P  C  *  I  W  D  G  C  C  *  C  V  K  F  D  A  C  R  *  V  S  K  Y  Y  W  C  L  T  N  P  Y  K  V  I  N  C  V  L  F  I  A  S  *  L  V  V  C  V  Y  M  C  C  I  Y  C  N  S  L  L  N  T  N  K  V  C  L  R  F  Q  L  L  C  G  R  A  *  F  *  P  R  F  F  I  P  L  L  R  P  I  Q  N  G  F  Y  L  S  V  *  T  *  K  M  T  N  Q  I  L  T  I  N  A  E  F  C  T  N  I  N  *  L  D  T  F  F  K  L  K  D  L  K  G  L  L  N  S  F  I  C  Q  K  W  L  S  E  V  G  C  V  T  V  N  F  S  L  M  D  F  S  G  C  L  L  I  F  F  F  T  E  F  A  V  A  I  R  N  L  F  S  L  I  *  E  I  V  *  *  Q  F  A  T  N  D  *  Q  R  D  L  N  *  N  G  N  S  W  R  D  V  G  R  M  Q  V  E  H  A  L  I  L  P  F  L  *  I  I  N  I  G  *  N  L  S  L  S  G  V  H  D  N  P  I  Y  V  C  H  V  F  N  L  I  V  Y  F  I  *  P  *  L  I  N  M  W  *  L  *  K  R  I  K  Y  F  I  V  E  Y  S  A  I  F  *  L  *  S  I  I  S  P  D  T  F  F  K  N  K  K  K  L  H  K  S  I  Y  F  K  K  *  L  L  I  </first_frame>
            <second_frame>  T   : S  *  L  P  V  N  C  C  C  N  I  P  T  *  S  *  H  F  L  S  G  E  T  L  L  F  Q  T  D  P  V  K  F  G  M  V  A  V  D  V  *  N  L  M  P  V  D  E  *  V  N  I  I  G  A  *  P  I  H  T  K  *  L  T  V  S  C  S  L  Q  A  S  W  W  F  V  Y  I  C  A  V  Y  I  V  T  A  C  L  I  L  I  R  C  V  C  V  S  S  F  S  V  D  E  H  D  F  D  P  G  F  L  Y  H  Y  Y  A  P  Y  K  M  D  F  T  Y  L  C  K  H  R  K  *  L  T  K  Y  L  Q  L  M  L  N  F  V  Q  I  S  I  N  *  T  P  F  L  S  *  K  T  *  R  D  Y  S  I  V  L  Y  A  K  S  G  C  Q  R  *  D  V  *  P  S  I  F  L  *  W  T  S  A  V  V  C  S  F  F  S  S  R  N  L  Q  L  L  L  G  I  Y  F  L  *  F  K  K  *  F  S  N  S  L  Q  Q  M  I  N  R  E  T  *  T  K  M  E  T  H  G  G  T  L  D  V  C  K  *  N  T  H  L  Y  S  P  F  Y  K  *  *  I  L  D  K  T  Y  P  Y  Q  V  F  T  T  I  Q  Y  M  Y  V  M  C  L  I  *  *  F  I  L  F  N  L  N  *  L  T  C  G  N  F  R  K  E  *  N  I  L  *  *  S  I  V  L  S  S  N  C  R  V  S  F  L  P  T  L  F  S  K  I  R  K  N  Y  I  N  Q  Y  I  S  K  N  N  Y  *  F </second_frame>
            <third_frame>   L  :  V  D  C  L  *  I  V  V  V  T  Y  P  L  E  V  N  I  S  F  L  E  R  R  Y  Y  F  K  L  T  L  L  N  L  G  W  L  L  L  M  C  E  I  *  C  L  *  M  S  K  *  I  L  L  V  P  N  Q  S  I  Q  S  D  *  L  C  P  V  H  C  K  L  V  G  G  L  C  I  Y  V  L  Y  I  L  *  Q  L  A  *  Y  *  *  G  V  F  A  F  P  A  S  L  W  T  S  M  I  L  T  Q  V  F  Y  T  I  I  T  P  H  T  K  W  I  L  L  I  C  V  N  I  E  N  D  *  P  N  T  Y  N  *  C  *  I  L  Y  K  Y  Q  L  T  R  H  L  F  *  A  K  R  P  K  G  I  T  Q  *  F  Y  M  P  K  V  V  V  R  G  R  M  C  D  R  Q  F  F  S  D  G  L  Q  R  L  F  A  H  F  F  L  H  G  I  C  S  C  Y  *  E  F  I  F  F  N  L  R  N  S  L  V  T  V  C  N  K  *  L  T  E  R  L  E  L  K  W  K  L  M  E  G  R  W  T  Y  A  S  R  T  R  T  Y  T  P  L  F  I  N  N  K  Y  W  I  K  L  I  L  I  R  C  S  R  Q  S  N  I  C  M  S  C  V  *  F  D  S  L  F  Y  L  T  L  I  N  *  H  V  V  T  L  E  K  N  K  I  F  Y  S  R  V  *  C  Y  L  L  I  V  E  Y  H  F  S  R  H  F  F  Q  K  *  E  K  I  T  *  I  N  I  F  Q  K  I  I  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17860" stop="17654"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTVSCSLQASWWFVYICAVYIVTACLILIRCVCVSSFSVDEHDFDPGFLYHYYAPYKMDFTYLCKHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23161" PGL_stop="18314"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23161" e_stop="22252"/>
            <exon e_start="20686" e_stop="20606"/>
            <exon e_start="20532" e_stop="20402"/>
            <exon e_start="19927" e_stop="19814"/>
            <exon e_start="19695" e_stop="19581"/>
            <exon e_start="19235" e_stop="19176"/>
            <exon e_start="18860" e_stop="18792"/>
            <exon e_start="18389" e_stop="18314"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="0.989"/>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.391" e_score="0.985"/>
          <exon-intron don_prob="0.989" acc_prob="0.698" e_score="0.947"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.749" acc_prob="0.982" e_score="0.950"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="23161" e_stop="22252" e_length="910"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="22251" i_stop="20687" i_length="1565"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20686" e_stop="20606" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="20605" i_stop="20533" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="20532" e_stop="20402" e_length="131"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.391">
            <gDNA_intron_boundary i_start="20401" i_stop="19928" i_length="474"/>
          </intron>
          <exon e_serial="4" e_score="0.947">
            <gDNA_exon_boundary e_start="19927" e_stop="19814" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.698">
            <gDNA_intron_boundary i_start="19813" i_stop="19696" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19695" e_stop="19581" e_length="115"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19580" i_stop="19236" i_length="345"/>
          </intron>
          <exon e_serial="6" e_score="0.950">
            <gDNA_exon_boundary e_start="19235" e_stop="19176" e_length="60"/>
          </exon>
          <intron i_serial="6" don_prob="0.749" acc_prob="0.982">
            <gDNA_intron_boundary i_start="19175" i_stop="18861" i_length="315"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18860" e_stop="18792" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="18791" i_stop="18390" i_length="402"/>
          </intron>
          <exon e_serial="8" e_score="0.974">
            <gDNA_exon_boundary e_start="18389" e_stop="18314" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23161" stop="22662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22784" stop="22252"/>
              <exon start="20686" stop="20606"/>
              <exon start="20532" stop="20446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22408" stop="22252"/>
              <exon start="20686" stop="20606"/>
              <exon start="20532" stop="20402"/>
              <exon start="19927" stop="19814"/>
              <exon start="19695" stop="19581"/>
              <exon start="19235" stop="19176"/>
              <exon start="18860" stop="18792"/>
              <exon start="18389" stop="18314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAATAATAATCATGAGACCCGACCACTTTCCCATACCTAATTTAATCAAGTAGCAACTTATGTTTCCAAATCTAATCCAAGATTTTCTCCACATATACTATAATATATTATCCACTAAAATATAATCTGAAATTTTCTACGGAATCTTATTCGAAGTTTAGAATCATATTAGAGCTTTAATTAAATTTAGGTTTGTGCAAAAATATGCAATTAATAGAATTTTCTCCATATTACAATCCATATTAATTTTAGAAGTACCAATGGCAGAAGCTGTAAATTTAACCATTTTCAAGGTGTGTTTTTATTAAAAGGACTTTTGTCTCCTTCACACTTTCCTCGTCATCCTTGTTATCACCATTCTCCGTCTCTCTTAAAGATCAAACAAAACTCTCTGTATCTAAATTTGATCATGAAATTCGAAGGAGAAATTCATCGCAATTCAACTTAGGAGTTCATATTTTGCTAAAAAAACGAAGAAATTTGGATATTTTTTTGATTGTGTAAAGTGATTTTTGTTGTGAAATTTAGCGTGATTTTGAAGGATTAGGTTAACGATTTCATGGTGTTTATATAGTAGATAAGAGTATCATGATGGCGGAGAATCCACGGCCATTGCAGGCGCGTCCGTTTGAGGATCACGCGCCGCTGCAGTCTCTACGGATGGTGGAGGAGGAAGAAGAGGAGGAGGAGGAGGGCGATGAAGATGGCGCATACGAGGATGATGGAGGGGAAGAGACTATGGATGAGGCGGAGGATGTAAGCATGAAGGTATTGAATCACCATCAATATGGAGGACAGAGCCAACAGTTGTGCGGAGGTGGAGTTGTGGAAGTTTCTAGAACAAGTGAGCTTACTCTTGCTTTTGAAGGTGAAGTCTATGTTTTTCCTGCAGTCACTCCTGATAAG : GTGCAAGCAGTGCTCTTACTATTGGAGGGATGTGACATTCCTACTGCTGTGCCCACTGTTGAACTTCCATTCGACAACAAG : GTTGAGGATTTGCCAAAGCAAGCTAATCTTTCGAAAAGATTTGCCTCCTTGGTTAGGTTCCGAGAGAAGCGAAAGGAGAGATGTTTTGACAAGAAAATTAGATACAGTGTCAGGAAAGAGGTTGCTCAAAG : GATGCATAGGAAAAATGGTCAATTTGCATCTTTGAAATCAAGTTCTGGATCTTCTAGCTGCGATTCAGCCAAGAGTAGCCTTGAAGGAGATGGCACACAACATTCTCTAACTAT : TCCTGGAAAGTGTCACCATTGTGGTGTGAGTGAAAATTGTACGCCAGCGATGCGTCGTGGGCCAGATGGACCAAGGACACTCTGCAATGCATGTGGACTTAAGTGGGCAAACAAG : GGAACATTGAGAGATCTAAGCAAGGCAGGGAGGACAATTTCTGTTGAACTAAACGAACTG : GGAACTCCTAACAATCCCGTGAAGGCATTTGCTGAAGGATCCCTTGATCATTGTGCTGATGTGGAAAAG : AATCTATTCAGCTCTGGTAGCAATCTTGCAAATGATATTCCTGCGGGTATCATTAGTTCTTCGAACAATCTTGTTG</gDNA_template>
            <first_frame> K  K  I  I  I  M  R  P  D  H  F  P  I  P  N  L  I  K  *  Q  L  M  F  P  N  L  I  Q  D  F  L  H  I  Y  Y  N  I  L  S  T  K  I  *  S  E  I  F  Y  G  I  L  F  E  V  *  N  H  I  R  A  L  I  K  F  R  F  V  Q  K  Y  A  I  N  R  I  F  S  I  L  Q  S  I  L  I  L  E  V  P  M  A  E  A  V  N  L  T  I  F  K  V  C  F  Y  *  K  D  F  C  L  L  H  T  F  L  V  I  L  V  I  T  I  L  R  L  S  *  R  S  N  K  T  L  C  I  *  I  *  S  *  N  S  K  E  K  F  I  A  I  Q  L  R  S  S  Y  F  A  K  K  T  K  K  F  G  Y  F  F  D  C  V  K  *  F  L  L  *  N  L  A  *  F  *  R  I  R  L  T  I  S  W  C  L  Y  S  R  *  E  Y  H  D  G  G  E  S  T  A  I  A  G  A  S  V  *  G  S  R  A  A  A  V  S  T  D  G  G  G  G  R  R  G  G  G  G  G  R  *  R  W  R  I  R  G  *  W  R  G  R  D  Y  G  *  G  G  G  C  K  H  E  G  I  E  S  P  S  I  W  R  T  E  P  T  V  V  R  R  W  S  C  G  S  F  *  N  K  *  A  Y  S  C  F  *  R  *  S  L  C  F  S  C  S  H  S  *  *   : G  A  S  S  A  L  T  I  G  G  M  *  H  S  Y  C  C  A  H  C  *  T  S  I  R  Q  Q   : G  *  G  F  A  K  A  S  *  S  F  E  K  I  C  L  L  G  *  V  P  R  E  A  K  G  E  M  F  *  Q  E  N  *  I  Q  C  Q  E  R  G  C  S  K  :  D  A  *  E  K  W  S  I  C  I  F  E  I  K  F  W  I  F  *  L  R  F  S  Q  E  *  P  *  R  R  W  H  T  T  F  S  N  Y  :  S  W  K  V  S  P  L  W  C  E  *  K  L  Y  A  S  D  A  S  W  A  R  W  T  K  D  T  L  Q  C  M  W  T  *  V  G  K  Q   : G  N  I  E  R  S  K  Q  G  R  E  D  N  F  C  *  T  K  R  T   : G  N  S  *  Q  S  R  E  G  I  C  *  R  I  P  *  S  L  C  *  C  G  K   : E  S  I  Q  L  W  *  Q  S  C  K  *  Y  S  C  G  Y  H  *  F  F  E  Q  S  C   </first_frame>
            <second_frame>  K  K  *  *  S  *  D  P  T  T  F  P  Y  L  I  *  S  S  S  N  L  C  F  Q  I  *  S  K  I  F  S  T  Y  T  I  I  Y  Y  P  L  K  Y  N  L  K  F  S  T  E  S  Y  S  K  F  R  I  I  L  E  L  *  L  N  L  G  L  C  K  N  M  Q  L  I  E  F  S  P  Y  Y  N  P  Y  *  F  *  K  Y  Q  W  Q  K  L  *  I  *  P  F  S  R  C  V  F  I  K  R  T  F  V  S  F  T  L  S  S  S  S  L  L  S  P  F  S  V  S  L  K  D  Q  T  K  L  S  V  S  K  F  D  H  E  I  R  R  R  N  S  S  Q  F  N  L  G  V  H  I  L  L  K  K  R  R  N  L  D  I  F  L  I  V  *  S  D  F  C  C  E  I  *  R  D  F  E  G  L  G  *  R  F  H  G  V  Y  I  V  D  K  S  I  M  M  A  E  N  P  R  P  L  Q  A  R  P  F  E  D  H  A  P  L  Q  S  L  R  M  V  E  E  E  E  E  E  E  E  E  G  D  E  D  G  A  Y  E  D  D  G  G  E  E  T  M  D  E  A  E  D  V  S  M  K  V  L  N  H  H  Q  Y  G  G  Q  S  Q  Q  L  C  G  G  G  V  V  E  V  S  R  T  S  E  L  T  L  A  F  E  G  E  V  Y  V  F  P  A  V  T  P  D  K  :  V  Q  A  V  L  L  L  L  E  G  C  D  I  P  T  A  V  P  T  V  E  L  P  F  D  N  K  :  V  E  D  L  P  K  Q  A  N  L  S  K  R  F  A  S  L  V  R  F  R  E  K  R  K  E  R  C  F  D  K  K  I  R  Y  S  V  R  K  E  V  A  Q  R :   M  H  R  K  N  G  Q  F  A  S  L  K  S  S  S  G  S  S  S  C  D  S  A  K  S  S  L  E  G  D  G  T  Q  H  S  L  T  I :   P  G  K  C  H  H  C  G  V  S  E  N  C  T  P  A  M  R  R  G  P  D  G  P  R  T  L  C  N  A  C  G  L  K  W  A  N  K  :  G  T  L  R  D  L  S  K  A  G  R  T  I  S  V  E  L  N  E  L  :  G  T  P  N  N  P  V  K  A  F  A  E  G  S  L  D  H  C  A  D  V  E  K  :  N  L  F  S  S  G  S  N  L  A  N  D  I  P  A  G  I  I  S  S  S  N  N  L  V  </second_frame>
            <third_frame>   K  N  N  N  H  E  T  R  P  L  S  H  T  *  F  N  Q  V  A  T  Y  V  S  K  S  N  P  R  F  S  P  H  I  L  *  Y  I  I  H  *  N  I  I  *  N  F  L  R  N  L  I  R  S  L  E  S  Y  *  S  F  N  *  I  *  V  C  A  K  I  C  N  *  *  N  F  L  H  I  T  I  H  I  N  F  R  S  T  N  G  R  S  C  K  F  N  H  F  Q  G  V  F  L  L  K  G  L  L  S  P  S  H  F  P  R  H  P  C  Y  H  H  S  P  S  L  L  K  I  K  Q  N  S  L  Y  L  N  L  I  M  K  F  E  G  E  I  H  R  N  S  T  *  E  F  I  F  C  *  K  N  E  E  I  W  I  F  F  *  L  C  K  V  I  F  V  V  K  F  S  V  I  L  K  D  *  V  N  D  F  M  V  F  I  *  *  I  R  V  S  *  W  R  R  I  H  G  H  C  R  R  V  R  L  R  I  T  R  R  C  S  L  Y  G  W  W  R  R  K  K  R  R  R  R  R  A  M  K  M  A  H  T  R  M  M  E  G  K  R  L  W  M  R  R  R  M  *  A  *  R  Y  *  I  T  I  N  M  E  D  R  A  N  S  C  A  E  V  E  L  W  K  F  L  E  Q  V  S  L  L  L  L  L  K  V  K  S  M  F  F  L  Q  S  L  L  I  R :   C  K  Q  C  S  Y  Y  W  R  D  V  T  F  L  L  L  C  P  L  L  N  F  H  S  T  T  R :   L  R  I  C  Q  S  K  L  I  F  R  K  D  L  P  P  W  L  G  S  E  R  S  E  R  R  D  V  L  T  R  K  L  D  T  V  S  G  K  R  L  L  K   : G  C  I  G  K  M  V  N  L  H  L  *  N  Q  V  L  D  L  L  A  A  I  Q  P  R  V  A  L  K  E  M  A  H  N  I  L  *  L   : F  L  E  S  V  T  I  V  V  *  V  K  I  V  R  Q  R  C  V  V  G  Q  M  D  Q  G  H  S  A  M  H  V  D  L  S  G  Q  T  R :   E  H  *  E  I  *  A  R  Q  G  G  Q  F  L  L  N  *  T  N  W :   E  L  L  T  I  P  *  R  H  L  L  K  D  P  L  I  I  V  L  M  W  K  R :   I  Y  S  A  L  V  A  I  L  Q  M  I  F  L  R  V  S  L  V  L  R  T  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22605" stop="22252"/>
                    <exon start="20686" stop="20606"/>
                    <exon start="20532" stop="20402"/>
                    <exon start="19927" stop="19814"/>
                    <exon start="19695" stop="19581"/>
                    <exon start="19235" stop="19176"/>
                    <exon start="18860" stop="18792"/>
                    <exon start="18389" stop="18315"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFHGVYIVDKSIMMAENPRPLQARPFEDHAPLQSLRMVEEEEEEEEEGDEDGAYEDDGGEETMDEAEDVSMKVLNHHQYGGQSQQLCGGGVVEVSRTSELTLAFEGEVYVFPAVTPDKVQAVLLLLEGCDIPTAVPTVELPFDNKVEDLPKQANLSKRFASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKSSSGSSSCDSAKSSLEGDGTQHSLTIPGKCHHCGVSENCTPAMRRGPDGPRTLCNACGLKWANKGTLRDLSKAGRTISVELNELGTPNNPVKAFAEGSLDHCADVEKNLFSSGSNLANDIPAGIISSSNNLV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22940" stop="22710"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLHITIHINFRSTNGRSCKFNHFQGVFLLKGLLSPSHFPRHPCYHHSPSLLKIKQNSLYLNLIMKFEGEIHRNST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21350" e_stop="20804"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="21350" e_stop="20804" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21350" stop="20804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGATTTTTTGTTCGATCCATCTCTTAAAAGCGGCCTATTAGTGAAAAAAGTTCATTTCCATCATAATTCTAATGGAATTTGTGATTCTTGGAAGCTCCCATCCTCCTTTAGTCCGTTGCCCCTTGCCAGTCCAACGAAGGAATGGAAGAATTTATAGAAATGGTGTCTGGCTAACTGTACACTCTACATCCTAGAATTAATTTGGACATAGTAACTTGGCTGAGAATTTCCTTCTCTGTGCCCGTTTACTAGATATTAGTTTACTCCAAAAATAAATAAATCTTGAGAATATAGTTGGGAATTTTATGTGTCATTGCACCTTCTTTCTTTGTATATAAAGTTAGAAACAGCTGCTTTCCTGTGATACACCTCTAGACAGCTTCTCAGATCCCGTAGAAAGAATCAGAAATAGCTGAGAAATATTGGGGTTTCATTTTTATAATGGTGCTTCTCACCCAGAGACATGTTTAATTAAATATGATGCTGTCTCCATCTTACATGGTATGGTGTTTTTGCTTGTGTTTTCTATGTCATATGAATCATG</gDNA_template>
            <first_frame> F  *  F  F  V  R  S  I  S  *  K  R  P  I  S  E  K  S  S  F  P  S  *  F  *  W  N  L  *  F  L  E  A  P  I  L  L  *  S  V  A  P  C  Q  S  N  E  G  M  E  E  F  I  E  M  V  S  G  *  L  Y  T  L  H  P  R  I  N  L  D  I  V  T  W  L  R  I  S  F  S  V  P  V  Y  *  I  L  V  Y  S  K  N  K  *  I  L  R  I  *  L  G  I  L  C  V  I  A  P  S  F  F  V  Y  K  V  R  N  S  C  F  P  V  I  H  L  *  T  A  S  Q  I  P  *  K  E  S  E  I  A  E  K  Y  W  G  F  I  F  I  M  V  L  L  T  Q  R  H  V  *  L  N  M  M  L  S  P  S  Y  M  V  W  C  F  C  L  C  F  L  C  H  M  N  H  </first_frame>
            <second_frame>  S  D  F  L  F  D  P  S  L  K  S  G  L  L  V  K  K  V  H  F  H  H  N  S  N  G  I  C  D  S  W  K  L  P  S  S  F  S  P  L  P  L  A  S  P  T  K  E  W  K  N  L  *  K  W  C  L  A  N  C  T  L  Y  I  L  E  L  I  W  T  *  *  L  G  *  E  F  P  S  L  C  P  F  T  R  Y  *  F  T  P  K  I  N  K  S  *  E  Y  S  W  E  F  Y  V  S  L  H  L  L  S  L  Y  I  K  L  E  T  A  A  F  L  *  Y  T  S  R  Q  L  L  R  S  R  R  K  N  Q  K  *  L  R  N  I  G  V  S  F  L  *  W  C  F  S  P  R  D  M  F  N  *  I  *  C  C  L  H  L  T  W  Y  G  V  F  A  C  V  F  Y  V  I  *  I  M </second_frame>
            <third_frame>   L  I  F  C  S  I  H  L  L  K  A  A  Y  *  *  K  K  F  I  S  I  I  I  L  M  E  F  V  I  L  G  S  S  H  P  P  L  V  R  C  P  L  P  V  Q  R  R  N  G  R  I  Y  R  N  G  V  W  L  T  V  H  S  T  S  *  N  *  F  G  H  S  N  L  A  E  N  F  L  L  C  A  R  L  L  D  I  S  L  L  Q  K  *  I  N  L  E  N  I  V  G  N  F  M  C  H  C  T  F  F  L  C  I  *  S  *  K  Q  L  L  S  C  D  T  P  L  D  S  F  S  D  P  V  E  R  I  R  N  S  *  E  I  L  G  F  H  F  Y  N  G  A  S  H  P  E  T  C  L  I  K  Y  D  A  V  S  I  L  H  G  M  V  F  L  L  V  F  S  M  S  Y  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0129D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36730" PGL_stop="37874"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36730" e_stop="36843"/>
            <exon e_start="37434" e_stop="37874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.786" acc_prob="0.985" e_score="0.974"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="36730" e_stop="36843" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.786" acc_prob="0.985">
            <gDNA_intron_boundary i_start="36844" i_stop="37433" i_length="590"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="37434" e_stop="37874" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36730" stop="36843"/>
              <exon start="37434" stop="37874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36776" stop="36843"/>
              <exon start="37434" stop="37622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGACTTATGACTCTTACCAAGTCCAACATTTACATCAATCTGTAGCAATTTTGCATTAAGAAAGTTGATTTCATTTTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAA : GTCATTCTGTAGTTCTTTTTTGATGAAATTAGGAGGTTACAGCAAAATCTTGAATCCCAATTGAGATGTGCGGAAGTGGTACAACTACTACTACTATGTCACCAGACGTTTGTGGATCTAGCTTGCTTCTATCACTGCCTGATGACGTGTTTGCTATAGTAAGTAGATCACTTTCTCCAAGGGATGTATGTAATCTTGGTTTATGCTGTAGAAACTTGCATGATTTAGCTGCCTCTGAGAAGGTTTGGCTATCACAATGTGAAATGCTTGGGGTGGTTCCTTATCGGGATGTTATTGAATGGCGAAAGGGAGTTTGTTCCTACAAGGCACTTTGTCACTTCTTTGTAAGCATAAAGCCTTTGCTTGGTATTTGGGTTCATCAAAATCCTGAACTCGGCAATGTTGTTTATGTTATGCCTGGTTTTATCTCTGCGGTTGGTT</gDNA_template>
            <first_frame> M  T  Y  D  S  Y  Q  V  Q  H  L  H  Q  S  V  A  I  L  H  *  E  S  *  F  H  F  S  V  G  G  I  L  W  E  P  D  D  K  :  V  I  L  *  F  F  F  D  E  I  R  R  L  Q  Q  N  L  E  S  Q  L  R  C  A  E  V  V  Q  L  L  L  L  C  H  Q  T  F  V  D  L  A  C  F  Y  H  C  L  M  T  C  L  L  *  *  V  D  H  F  L  Q  G  M  Y  V  I  L  V  Y  A  V  E  T  C  M  I  *  L  P  L  R  R  F  G  Y  H  N  V  K  C  L  G  W  F  L  I  G  M  L  L  N  G  E  R  E  F  V  P  T  R  H  F  V  T  S  L  *  A  *  S  L  C  L  V  F  G  F  I  K  I  L  N  S  A  M  L  F  M  L  C  L  V  L  S  L  R  L  V </first_frame>
            <second_frame>  *  L  M  T  L  T  K  S  N  I  Y  I  N  L  *  Q  F  C  I  K  K  V  D  F  I  F  Q  W  V  E  F  C  G  N  Q  M  T  K :   S  F  C  S  S  F  L  M  K  L  G  G  Y  S  K  I  L  N  P  N  *  D  V  R  K  W  Y  N  Y  Y  Y  Y  V  T  R  R  L  W  I  *  L  A  S  I  T  A  *  *  R  V  C  Y  S  K  *  I  T  F  S  K  G  C  M  *  S  W  F  M  L  *  K  L  A  *  F  S  C  L  *  E  G  L  A  I  T  M  *  N  A  W  G  G  S  L  S  G  C  Y  *  M  A  K  G  S  L  F  L  Q  G  T  L  S  L  L  C  K  H  K  A  F  A  W  Y  L  G  S  S  K  S  *  T  R  Q  C  C  L  C  Y  A  W  F  Y  L  C  G  W   </second_frame>
            <third_frame>   D  L  *  L  L  P  S  P  T  F  T  S  I  C  S  N  F  A  L  R  K  L  I  S  F  F  S  G  W  N  S  V  G  T  R  *  Q   : S  H  S  V  V  L  F  *  *  N  *  E  V  T  A  K  S  *  I  P  I  E  M  C  G  S  G  T  T  T  T  T  M  S  P  D  V  C  G  S  S  L  L  L  S  L  P  D  D  V  F  A  I  V  S  R  S  L  S  P  R  D  V  C  N  L  G  L  C  C  R  N  L  H  D  L  A  A  S  E  K  V  W  L  S  Q  C  E  M  L  G  V  V  P  Y  R  D  V  I  E  W  R  K  G  V  C  S  Y  K  A  L  C  H  F  F  V  S  I  K  P  L  L  G  I  W  V  H  Q  N  P  E  L  G  N  V  V  Y  V  M  P  G  F  I  S  A  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37487" stop="37873"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPIEMCGSGTTTTTMSPDVCGSSLLLSLPDDVFAIVSRSLSPRDVCNLGLCCRNLHDLAASEKVWLSQCEMLGVVPYRDVIEWRKGVCSYKALCHFFVSIKPLLGIWVHQNPELGNVVYVMPGFISAVG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="36739" e_stop="37133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="36739" e_stop="37133" e_length="395"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36739" stop="37133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365691" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTCTTACCAAGTCCAACATTTACATCAATCTGTAGCAATTTTGCATTAAGAAAGTTGATTTCATTTTTCAGTGGGTGGAATTCTGTGGGAACCAGATGACAAAGTATGGTTTTTTTTGCTGTTTTTCTGTATGGGCTGTTAGATCTTACTTTGCTTTATAACCCCTTTGTTGTGCTTTTTCTCAATTTCTGTATATCTTTAAGTTGATCAAGTTTTTGCTGCAAAATCTTGAATCTCAATTTAAGAAAGTTAGGGTTTTTTTCTCTCTTGAGTAATTGAGTTTTGATGCCTGATCATTCTGTAGTTTTTAAAAAAAAATGAATTTCGGAAGTTATGGCAAATTCTTGTATCCCAATTTAAGAAAGTAGGTTTCTATGTGAATGATTACCCCTC</gDNA_template>
            <first_frame> D  S  Y  Q  V  Q  H  L  H  Q  S  V  A  I  L  H  *  E  S  *  F  H  F  S  V  G  G  I  L  W  E  P  D  D  K  V  W  F  F  L  L  F  F  C  M  G  C  *  I  L  L  C  F  I  T  P  L  L  C  F  F  S  I  S  V  Y  L  *  V  D  Q  V  F  A  A  K  S  *  I  S  I  *  E  S  *  G  F  F  L  S  *  V  I  E  F  *  C  L  I  I  L  *  F  L  K  K  N  E  F  R  K  L  W  Q  I  L  V  S  Q  F  K  K  V  G  F  Y  V  N  D  Y  P   </first_frame>
            <second_frame>  T  L  T  K  S  N  I  Y  I  N  L  *  Q  F  C  I  K  K  V  D  F  I  F  Q  W  V  E  F  C  G  N  Q  M  T  K  Y  G  F  F  C  C  F  S  V  W  A  V  R  S  Y  F  A  L  *  P  L  C  C  A  F  S  Q  F  L  Y  I  F  K  L  I  K  F  L  L  Q  N  L  E  S  Q  F  K  K  V  R  V  F  F  S  L  E  *  L  S  F  D  A  *  S  F  C  S  F  *  K  K  M  N  F  G  S  Y  G  K  F  L  Y  P  N  L  R  K  *  V  S  M  *  M  I  T  P  </second_frame>
            <third_frame>   L  L  P  S  P  T  F  T  S  I  C  S  N  F  A  L  R  K  L  I  S  F  F  S  G  W  N  S  V  G  T  R  *  Q  S  M  V  F  F  A  V  F  L  Y  G  L  L  D  L  T  L  L  Y  N  P  F  V  V  L  F  L  N  F  C  I  S  L  S  *  S  S  F  C  C  K  I  L  N  L  N  L  R  K  L  G  F  F  S  L  L  S  N  *  V  L  M  P  D  H  S  V  V  F  K  K  K  *  I  S  E  V  M  A  N  S  C  I  P  I  *  E  S  R  F  L  C  E  *  L  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0129D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38611" PGL_stop="39800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38611" e_stop="39800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="38611" e_stop="39800" e_length="1190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38611" stop="39217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38844" stop="39680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38846" stop="39672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39300" stop="39800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355304" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTCAAACTCTACCAATGGCAAACGTGATCTCCTTGGAAAGAATTCCTCTGGCCACGGAAGTAAGCATGCCCAGCTTCACGAGTTCCTGCAGCCAGGTGATGCAATAGGGCTGACATTACATGCTTCCACTGTGAAGTTATCCTCTTATCGTGCTTGGCCAAATATGCATGAAAGTAAATTTGCTCTGTACAAGTTGCCTATGCGGACACCAGAAGTGGGCCAAGAATATGCTGGTGTATGGGGAGGGACTTTTGGTTGGCCCCCGGGGAGGCCTTCTGATGATAAGCCCGGAAAAGCATTGTTTCTTCTTTTGCTGTCTTATGAGGAGTCCCAAGGTCAGAAGCTACTTATTGCGACCAAGATATTAGAAGGTACACATTATGTTTTGCATCCTAATGGCTCAGCTATGTTTATAGTAAATATTGAAGAGCCTTCGAATGATCCATTCCCTTGGTGCACCGATGGGCATGATTCCAACCCTGTAGATGTTAAGCATGCTTTTATGGGTGAAGGTATTGCTAACGGGTATGGTTTCCGATATCCTGGTTCAAAACCTGGTTCACTCTTTGTAATCCATGATAAAATGCTTGCTTTTATATGGAAGGAGTCCAGGTCTGTGTTGGCCTTGCAGAGGCTCGATTTGCAAGAGGTTTTGAGCAAGGGGGAAAGGATCCCTGCTCTACCTCCGGTTTCCAACTTTGCATACCTTACCAGGTCCTATTCAAACGTGTTTGCCAACGGTCTGACTTCACCAAGGCAAAATCATCCGTAGGGATGACATGCAAGAAGAGCAAAGAATCTTTTGCTAGAAATGGCCGAAACCCACAAAAAAATAGGTGGAAAACAGCCTAAGTTTGTTGTACTTGTAAGTTCGTTTAATTCACACAGCAGGGTGATTGAGGTGCGTGGTTTGCAAGTTACTCAACTGCTTGTAGCGTATGGCGAGATTTTTCAACTTCCTATTTATGATTCCTGGGCAGGAATAAAGCTTTTTCAAACCATTCTGTAGTTTTATAATGAGGATTTCCATTTCTATATTTATTGAACAATCTTTGTGCTGTTGTTAATTATGAAAGAGTTATAGTTTCCTTGAAGCAGGAATGAGGTTGCACCTTCTCTTGATATTATTTGTTGTAAACTTATCTTCTATGAAAAAATTGATTGAGTTAATGTTTTCCATTGGGAAT</gDNA_template>
            <first_frame> E  V  K  L  Y  Q  W  Q  T  *  S  P  W  K  E  F  L  W  P  R  K  *  A  C  P  A  S  R  V  P  A  A  R  *  C  N  R  A  D  I  T  C  F  H  C  E  V  I  L  L  S  C  L  A  K  Y  A  *  K  *  I  C  S  V  Q  V  A  Y  A  D  T  R  S  G  P  R  I  C  W  C  M  G  R  D  F  W  L  A  P  G  E  A  F  *  *  *  A  R  K  S  I  V  S  S  F  A  V  L  *  G  V  P  R  S  E  A  T  Y  C  D  Q  D  I  R  R  Y  T  L  C  F  A  S  *  W  L  S  Y  V  Y  S  K  Y  *  R  A  F  E  *  S  I  P  L  V  H  R  W  A  *  F  Q  P  C  R  C  *  A  C  F  Y  G  *  R  Y  C  *  R  V  W  F  P  I  S  W  F  K  T  W  F  T  L  C  N  P  *  *  N  A  C  F  Y  M  E  G  V  Q  V  C  V  G  L  A  E  A  R  F  A  R  G  F  E  Q  G  G  K  D  P  C  S  T  S  G  F  Q  L  C  I  P  Y  Q  V  L  F  K  R  V  C  Q  R  S  D  F  T  K  A  K  S  S  V  G  M  T  C  K  K  S  K  E  S  F  A  R  N  G  R  N  P  Q  K  N  R  W  K  T  A  *  V  C  C  T  C  K  F  V  *  F  T  Q  Q  G  D  *  G  A  W  F  A  S  Y  S  T  A  C  S  V  W  R  D  F  S  T  S  Y  L  *  F  L  G  R  N  K  A  F  S  N  H  S  V  V  L  *  *  G  F  P  F  L  Y  L  L  N  N  L  C  A  V  V  N  Y  E  R  V  I  V  S  L  K  Q  E  *  G  C  T  F  S  *  Y  Y  L  L  *  T  Y  L  L  *  K  N  *  L  S  *  C  F  P  L  G   </first_frame>
            <second_frame>  K  S  N  S  T  N  G  K  R  D  L  L  G  K  N  S  S  G  H  G  S  K  H  A  Q  L  H  E  F  L  Q  P  G  D  A  I  G  L  T  L  H  A  S  T  V  K  L  S  S  Y  R  A  W  P  N  M  H  E  S  K  F  A  L  Y  K  L  P  M  R  T  P  E  V  G  Q  E  Y  A  G  V  W  G  G  T  F  G  W  P  P  G  R  P  S  D  D  K  P  G  K  A  L  F  L  L  L  L  S  Y  E  E  S  Q  G  Q  K  L  L  I  A  T  K  I  L  E  G  T  H  Y  V  L  H  P  N  G  S  A  M  F  I  V  N  I  E  E  P  S  N  D  P  F  P  W  C  T  D  G  H  D  S  N  P  V  D  V  K  H  A  F  M  G  E  G  I  A  N  G  Y  G  F  R  Y  P  G  S  K  P  G  S  L  F  V  I  H  D  K  M  L  A  F  I  W  K  E  S  R  S  V  L  A  L  Q  R  L  D  L  Q  E  V  L  S  K  G  E  R  I  P  A  L  P  P  V  S  N  F  A  Y  L  T  R  S  Y  S  N  V  F  A  N  G  L  T  S  P  R  Q  N  H  P  *  G  *  H  A  R  R  A  K  N  L  L  L  E  M  A  E  T  H  K  K  I  G  G  K  Q  P  K  F  V  V  L  V  S  S  F  N  S  H  S  R  V  I  E  V  R  G  L  Q  V  T  Q  L  L  V  A  Y  G  E  I  F  Q  L  P  I  Y  D  S  W  A  G  I  K  L  F  Q  T  I  L  *  F  Y  N  E  D  F  H  F  Y  I  Y  *  T  I  F  V  L  L  L  I  M  K  E  L  *  F  P  *  S  R  N  E  V  A  P  S  L  D  I  I  C  C  K  L  I  F  Y  E  K  I  D  *  V  N  V  F  H  W  E  </second_frame>
            <third_frame>   S  Q  T  L  P  M  A  N  V  I  S  L  E  R  I  P  L  A  T  E  V  S  M  P  S  F  T  S  S  C  S  Q  V  M  Q  *  G  *  H  Y  M  L  P  L  *  S  Y  P  L  I  V  L  G  Q  I  C  M  K  V  N  L  L  C  T  S  C  L  C  G  H  Q  K  W  A  K  N  M  L  V  Y  G  E  G  L  L  V  G  P  R  G  G  L  L  M  I  S  P  E  K  H  C  F  F  F  C  C  L  M  R  S  P  K  V  R  S  Y  L  L  R  P  R  Y  *  K  V  H  I  M  F  C  I  L  M  A  Q  L  C  L  *  *  I  L  K  S  L  R  M  I  H  S  L  G  A  P  M  G  M  I  P  T  L  *  M  L  S  M  L  L  W  V  K  V  L  L  T  G  M  V  S  D  I  L  V  Q  N  L  V  H  S  L  *  S  M  I  K  C  L  L  L  Y  G  R  S  P  G  L  C  W  P  C  R  G  S  I  C  K  R  F  *  A  R  G  K  G  S  L  L  Y  L  R  F  P  T  L  H  T  L  P  G  P  I  Q  T  C  L  P  T  V  *  L  H  Q  G  K  I  I  R  R  D  D  M  Q  E  E  Q  R  I  F  C  *  K  W  P  K  P  T  K  K  *  V  E  N  S  L  S  L  L  Y  L  *  V  R  L  I  H  T  A  G  *  L  R  C  V  V  C  K  L  L  N  C  L  *  R  M  A  R  F  F  N  F  L  F  M  I  P  G  Q  E  *  S  F  F  K  P  F  C  S  F  I  M  R  I  S  I  S  I  F  I  E  Q  S  L  C  C  C  *  L  *  K  S  Y  S  F  L  E  A  G  M  R  L  H  L  L  L  I  L  F  V  V  N  L  S  S  M  K  K  L  I  E  L  M  F  S  I  G  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38612" stop="39385"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNSTNGKRDLLGKNSSGHGSKHAQLHEFLQPGDAIGLTLHASTVKLSSYRAWPNMHESKFALYKLPMRTPEVGQEYAGVWGGTFGWPPGRPSDDKPGKALFLLLLSYEESQGQKLLIATKILEGTHYVLHPNGSAMFIVNIEEPSNDPFPWCTDGHDSNPVDVKHAFMGEGIANGYGFRYPGSKPGSLFVIHDKMLAFIWKESRSVLALQRLDLQEVLSKGERIPALPPVSNFAYLTRSYSNVFANGLTSPRQNHP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39392" stop="39622"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HARRAKNLLLEMAETHKKIGGKQPKFVVLVSSFNSHSRVIEVRGLQVTQLLVAYGEIFQLPIYDSWAGIKLFQTIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="44529" PGL_stop="40229"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44529" e_stop="43903"/>
            <exon e_start="43572" e_stop="43109"/>
            <exon e_start="40251" e_stop="40229"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.935" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.135" e_score="1.000"/>
          <exon-only e_score="0.783"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="44529" e_stop="43903" e_length="627"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.935">
            <gDNA_intron_boundary i_start="43902" i_stop="43573" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43572" e_stop="43109" e_length="464"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.135">
            <gDNA_intron_boundary i_start="43108" i_stop="40252" i_length="2857"/>
          </intron>
          <exon e_serial="3" e_score="0.783">
            <gDNA_exon_boundary e_start="40251" e_stop="40229" e_length="23"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44529" stop="44191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44432" stop="44227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44320" stop="43903"/>
              <exon start="43572" stop="43455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44031" stop="43903"/>
              <exon start="43572" stop="43109"/>
              <exon start="40251" stop="40229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711851" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAAGCCCCTTTCCATATTTTGTGTGGTCATGATGACGTTATTACATGCTTGTATGCAAGTATTGAGCTTGATATAGTTATAAGTGGATCAAAAGATGGAACTTGTGTTTTCCATACGCTACGGGATGGGAGATACGTTAGATCCCTACAACATCCATCTGGCAGTCCACTGTCAAAGCTTGTTGCATCACGTCATGGAAGGATTGTTCTTTATTCTGATGATGATCTTAGTTTGCACCTCTACTCTATAAATGGCAAACACATTTCATCTTCTGAATCCAATGGCCGCCTAAACTGTCTTGAACTCAGTAGCTGCGGAGAGTTCTTGGTTTGTGCTGGAGATCAAGGGCTAATCATCGTACGCTCTATGAACTCACTTGAGATTGTGGGGAAGTACAATGGTATTGGGAAAATAGTAACTTCACTAACTGTGACACCGGAAGAATGCTTTATAGCTGGGACTAAGGATGGAAGTCTTCTTGTTTATTCAATAGAAAACCCTCAACTTCGTAAAACTAGCATCCCGAGGAATTCAAAATCCAAAACCTCTATGACATAGTGAATTTGCTGTTCTGGGCTGTGGTGTAAATTTAACAATACCATCACTGGAAGTGATGCTGAATTGAG : GGTGAAATGAAGCATAATTATGTCATCAAAAAGTGAGATATATTATGGAGTATGAGCACCTGATTGGTGTTTCATTTTTGAAGAGGAAAATATGGATGTCCCTTCAGTAGCTATTATAGCAGTGCCCTCAAATCGCTGTATCCGTGACAGGATTCTTCGAGCCTCAACCTGTAGAAAGACAAAGAATGGTAGAATATAGAACCATCCAAACATGATGTACTGCGATATTCAGCTACTTGTGGATGCAGTCGCCGCCACCTAGTGTACAGCATTTTGTGCACATTTTCCTTATATGAGAGGCCTCAAATGTTGTATCAAGCGATAACTGTAATTAAACCGCGTTGAAAATTAGTTCTTTGTGATTGTGATCATTGGGTGTTTAGCCCCTAGTGATTTTTGTATAGATGGGCTTAACACCCTTATAAGGAATACCATATAATGAAAATTTCATTGTAATTTCCCTA : ATAAAAAAAAAAAAAAGAAATTA</gDNA_template>
            <first_frame> *  S  P  F  P  Y  F  V  W  S  *  *  R  Y  Y  M  L  V  C  K  Y  *  A  *  Y  S  Y  K  W  I  K  R  W  N  L  C  F  P  Y  A  T  G  W  E  I  R  *  I  P  T  T  S  I  W  Q  S  T  V  K  A  C  C  I  T  S  W  K  D  C  S  L  F  *  *  *  S  *  F  A  P  L  L  Y  K  W  Q  T  H  F  I  F  *  I  Q  W  P  P  K  L  S  *  T  Q  *  L  R  R  V  L  G  L  C  W  R  S  R  A  N  H  R  T  L  Y  E  L  T  *  D  C  G  E  V  Q  W  Y  W  E  N  S  N  F  T  N  C  D  T  G  R  M  L  Y  S  W  D  *  G  W  K  S  S  C  L  F  N  R  K  P  S  T  S  *  N  *  H  P  E  E  F  K  I  Q  N  L  Y  D  I  V  N  L  L  F  W  A  V  V  *  I  *  Q  Y  H  H  W  K  *  C  *  I  E  :  G  E  M  K  H  N  Y  V  I  K  K  *  D  I  L  W  S  M  S  T  *  L  V  F  H  F  *  R  G  K  Y  G  C  P  F  S  S  Y  Y  S  S  A  L  K  S  L  Y  P  *  Q  D  S  S  S  L  N  L  *  K  D  K  E  W  *  N  I  E  P  S  K  H  D  V  L  R  Y  S  A  T  C  G  C  S  R  R  H  L  V  Y  S  I  L  C  T  F  S  L  Y  E  R  P  Q  M  L  Y  Q  A  I  T  V  I  K  P  R  *  K  L  V  L  C  D  C  D  H  W  V  F  S  P  *  *  F  L  Y  R  W  A  *  H  P  Y  K  E  Y  H  I  M  K  I  S  L  *  F  P  * :   *  K  K  K  K  E  I  </first_frame>
            <second_frame>  E  A  P  F  H  I  L  C  G  H  D  D  V  I  T  C  L  Y  A  S  I  E  L  D  I  V  I  S  G  S  K  D  G  T  C  V  F  H  T  L  R  D  G  R  Y  V  R  S  L  Q  H  P  S  G  S  P  L  S  K  L  V  A  S  R  H  G  R  I  V  L  Y  S  D  D  D  L  S  L  H  L  Y  S  I  N  G  K  H  I  S  S  S  E  S  N  G  R  L  N  C  L  E  L  S  S  C  G  E  F  L  V  C  A  G  D  Q  G  L  I  I  V  R  S  M  N  S  L  E  I  V  G  K  Y  N  G  I  G  K  I  V  T  S  L  T  V  T  P  E  E  C  F  I  A  G  T  K  D  G  S  L  L  V  Y  S  I  E  N  P  Q  L  R  K  T  S  I  P  R  N  S  K  S  K  T  S  M  T  *  *  I  C  C  S  G  L  W  C  K  F  N  N  T  I  T  G  S  D  A  E  L  R :   V  K  *  S  I  I  M  S  S  K  S  E  I  Y  Y  G  V  *  A  P  D  W  C  F  I  F  E  E  E  N  M  D  V  P  S  V  A  I  I  A  V  P  S  N  R  C  I  R  D  R  I  L  R  A  S  T  C  R  K  T  K  N  G  R  I  *  N  H  P  N  M  M  Y  C  D  I  Q  L  L  V  D  A  V  A  A  T  *  C  T  A  F  C  A  H  F  P  Y  M  R  G  L  K  C  C  I  K  R  *  L  *  L  N  R  V  E  N  *  F  F  V  I  V  I  I  G  C  L  A  P  S  D  F  C  I  D  G  L  N  T  L  I  R  N  T  I  *  *  K  F  H  C  N  F  P   : N  K  K  K  K  K  K  L </second_frame>
            <third_frame>   K  P  L  S  I  F  C  V  V  M  M  T  L  L  H  A  C  M  Q  V  L  S  L  I  *  L  *  V  D  Q  K  M  E  L  V  F  S  I  R  Y  G  M  G  D  T  L  D  P  Y  N  I  H  L  A  V  H  C  Q  S  L  L  H  H  V  M  E  G  L  F  F  I  L  M  M  I  L  V  C  T  S  T  L  *  M  A  N  T  F  H  L  L  N  P  M  A  A  *  T  V  L  N  S  V  A  A  E  S  S  W  F  V  L  E  I  K  G  *  S  S  Y  A  L  *  T  H  L  R  L  W  G  S  T  M  V  L  G  K  *  *  L  H  *  L  *  H  R  K  N  A  L  *  L  G  L  R  M  E  V  F  L  F  I  Q  *  K  T  L  N  F  V  K  L  A  S  R  G  I  Q  N  P  K  P  L  *  H  S  E  F  A  V  L  G  C  G  V  N  L  T  I  P  S  L  E  V  M  L  N  *   : G  *  N  E  A  *  L  C  H  Q  K  V  R  Y  I  M  E  Y  E  H  L  I  G  V  S  F  L  K  R  K  I  W  M  S  L  Q  *  L  L  *  Q  C  P  Q  I  A  V  S  V  T  G  F  F  E  P  Q  P  V  E  R  Q  R  M  V  E  Y  R  T  I  Q  T  *  C  T  A  I  F  S  Y  L  W  M  Q  S  P  P  P  S  V  Q  H  F  V  H  I  F  L  I  *  E  A  S  N  V  V  S  S  D  N  C  N  *  T  A  L  K  I  S  S  L  *  L  *  S  L  G  V  *  P  L  V  I  F  V  *  M  G  L  T  P  L  *  G  I  P  Y  N  E  N  F  I  V  I  S  L  :  I  K  K  K  K  R  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44528" stop="43971"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAPFHILCGHDDVITCLYASIELDIVISGSKDGTCVFHTLRDGRYVRSLQHPSGSPLSKLVASRHGRIVLYSDDDLSLHLYSINGKHISSSESNGRLNCLELSSCGEFLVCAGDQGLIIVRSMNSLEIVGKYNGIGKIVTSLTVTPEECFIAGTKDGSLLVYSIENPQLRKTSIPRNSKSKTSMT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48787" PGL_stop="44564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48787" e_stop="48763"/>
            <exon e_start="47725" e_stop="47600"/>
            <exon e_start="47512" e_stop="47141"/>
            <exon e_start="47060" e_stop="46829"/>
            <exon e_start="44668" e_stop="44564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.832" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48787" e_stop="48763" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="48762" i_stop="47726" i_length="1037"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47725" e_stop="47600" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.961" acc_prob="0.738">
            <gDNA_intron_boundary i_start="47599" i_stop="47513" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="47512" e_stop="47141" e_length="372"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="47140" i_stop="47061" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47060" e_stop="46829" e_length="232"/>
          </exon>
          <intron i_serial="4" don_prob="0.832" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46828" i_stop="44669" i_length="2160"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44668" e_stop="44564" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48787" stop="48763"/>
              <exon start="47725" stop="47600"/>
              <exon start="47512" stop="47141"/>
              <exon start="47060" stop="47045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47356" stop="47141"/>
              <exon start="47060" stop="46829"/>
              <exon start="44668" stop="44564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207171" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTGCCTACCTCCATGGGCTAAG : GGGTGTGCTGAGGAATTTGTTAGTAAGAACAGAGAGGCCCTTGAAAGTGAATATGTGAGCTCAAATCTACATCAATGGATTGATTTGGTATTTGGCTACAAGCAGCGGGGAAAACCAGCAGTTGAG : GCAGCAAATATTTTTTACTATTTGACATATGAAGATGCTGTGGATCTGGATACCATGGATGATGAATTGCAAAGGTCTGCCATAGAAGATCAAATTGCCAACTTTGGTCAAACACCAATTCAACTTTTCCGGAAGAAACATCCGAGAAGAGGACCTCCGATTCCAATTGCTCATCCTCTACGATTTGCCCCTGGTTCTATCAACCTAACGTCAATGGTTTCATGTGCAAGCAGTTGTCCGTCAGCTACTCTGTATGTTAATGTGCTGGACTCGAACATTGTTCTTGTGAACCAGGGCCTCAGCATGTCTGTTAAGACATGGGTGACCACCCAATTGCAGTCCGGTGGGAACTTTACCTTCTCTAGCTCACAG : GATCCTTTTTTCGGGATTGGTTCTGATATCCTTCCTCCTCGGAAAATCGGGAGTCCTCTGGCTGAAAATATCGAGCTTGGAGCACAATGCTTTGGAACATTATCAACACCGTCTGAAAATTTTTTGATAACATGTGGTACCTGCGAAAACAGCTTTCAGGTTATTTCGCTAACTGATGGAAGAATGGTACAGAGCATTAGACAACATAAAGATGTTGTGAGCTGCATTTCAG : TTACATCTGATGGAAGCATCCTGGCTACTGGAAGTTACGACACAACAGTAATGATCTGGGAGATTGTGCGCATTAGAACCTCTGAAAAGCGAGTAAAGCACACTC</gDNA_template>
            <first_frame> Y  L  P  T  S  M  G  *   : G  V  C  *  G  I  C  *  *  E  Q  R  G  P  *  K  *  I  C  E  L  K  S  T  S  M  D  *  F  G  I  W  L  Q  A  A  G  K  T  S  S  *   : G  S  K  Y  F  L  L  F  D  I  *  R  C  C  G  S  G  Y  H  G  *  *  I  A  K  V  C  H  R  R  S  N  C  Q  L  W  S  N  T  N  S  T  F  P  E  E  T  S  E  K  R  T  S  D  S  N  C  S  S  S  T  I  C  P  W  F  Y  Q  P  N  V  N  G  F  M  C  K  Q  L  S  V  S  Y  S  V  C  *  C  A  G  L  E  H  C  S  C  E  P  G  P  Q  H  V  C  *  D  M  G  D  H  P  I  A  V  R  W  E  L  Y  L  L  *  L  T   : G  S  F  F  R  D  W  F  *  Y  P  S  S  S  E  N  R  E  S  S  G  *  K  Y  R  A  W  S  T  M  L  W  N  I  I  N  T  V  *  K  F  F  D  N  M  W  Y  L  R  K  Q  L  S  G  Y  F  A  N  *  W  K  N  G  T  E  H  *  T  T  *  R  C  C  E  L  H  F  S :   Y  I  *  W  K  H  P  G  Y  W  K  L  R  H  N  S  N  D  L  G  D  C  A  H  *  N  L  *  K  A  S  K  A  H   </first_frame>
            <second_frame>  I  C  L  P  P  W  A  K  :  G  C  A  E  E  F  V  S  K  N  R  E  A  L  E  S  E  Y  V  S  S  N  L  H  Q  W  I  D  L  V  F  G  Y  K  Q  R  G  K  P  A  V  E  :  A  A  N  I  F  Y  Y  L  T  Y  E  D  A  V  D  L  D  T  M  D  D  E  L  Q  R  S  A  I  E  D  Q  I  A  N  F  G  Q  T  P  I  Q  L  F  R  K  K  H  P  R  R  G  P  P  I  P  I  A  H  P  L  R  F  A  P  G  S  I  N  L  T  S  M  V  S  C  A  S  S  C  P  S  A  T  L  Y  V  N  V  L  D  S  N  I  V  L  V  N  Q  G  L  S  M  S  V  K  T  W  V  T  T  Q  L  Q  S  G  G  N  F  T  F  S  S  S  Q  :  D  P  F  F  G  I  G  S  D  I  L  P  P  R  K  I  G  S  P  L  A  E  N  I  E  L  G  A  Q  C  F  G  T  L  S  T  P  S  E  N  F  L  I  T  C  G  T  C  E  N  S  F  Q  V  I  S  L  T  D  G  R  M  V  Q  S  I  R  Q  H  K  D  V  V  S  C  I  S   : V  T  S  D  G  S  I  L  A  T  G  S  Y  D  T  T  V  M  I  W  E  I  V  R  I  R  T  S  E  K  R  V  K  H  T  </second_frame>
            <third_frame>   F  A  Y  L  H  G  L  R :   G  V  L  R  N  L  L  V  R  T  E  R  P  L  K  V  N  M  *  A  Q  I  Y  I  N  G  L  I  W  Y  L  A  T  S  S  G  E  N  Q  Q  L  R :   Q  Q  I  F  F  T  I  *  H  M  K  M  L  W  I  W  I  P  W  M  M  N  C  K  G  L  P  *  K  I  K  L  P  T  L  V  K  H  Q  F  N  F  S  G  R  N  I  R  E  E  D  L  R  F  Q  L  L  I  L  Y  D  L  P  L  V  L  S  T  *  R  Q  W  F  H  V  Q  A  V  V  R  Q  L  L  C  M  L  M  C  W  T  R  T  L  F  L  *  T  R  A  S  A  C  L  L  R  H  G  *  P  P  N  C  S  P  V  G  T  L  P  S  L  A  H  R :   I  L  F  S  G  L  V  L  I  S  F  L  L  G  K  S  G  V  L  W  L  K  I  S  S  L  E  H  N  A  L  E  H  Y  Q  H  R  L  K  I  F  *  *  H  V  V  P  A  K  T  A  F  R  L  F  R  *  L  M  E  E  W  Y  R  A  L  D  N  I  K  M  L  *  A  A  F  Q  :  L  H  L  M  E  A  S  W  L  L  E  V  T  T  Q  Q  *  *  S  G  R  L  C  A  L  E  P  L  K  S  E  *  S  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48786" stop="48763"/>
                    <exon start="47725" stop="47600"/>
                    <exon start="47512" stop="47141"/>
                    <exon start="47060" stop="46829"/>
                    <exon start="44668" stop="44565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>858</number_coding_nucleotides>
                  <number_encoded_amino_acids>286</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ICLPPWAKGCAEEFVSKNREALESEYVSSNLHQWIDLVFGYKQRGKPAVEAANIFYYLTYEDAVDLDTMDDELQRSAIEDQIANFGQTPIQLFRKKHPRRGPPIPIAHPLRFAPGSINLTSMVSCASSCPSATLYVNVLDSNIVLVNQGLSMSVKTWVTTQLQSGGNFTFSSSQDPFFGIGSDILPPRKIGSPLAENIELGAQCFGTLSTPSENFLITCGTCENSFQVISLTDGRMVQSIRQHKDVVSCISVTSDGSILATGSYDTTVMIWEIVRIRTSEKRVKHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="88900" PGL_stop="87822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88900" e_stop="88480"/>
            <exon e_start="88444" e_stop="87822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.922"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="88900" e_stop="88480" e_length="421"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88479" i_stop="88445" i_length="35"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="88444" e_stop="87822" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88900" stop="88480"/>
              <exon start="88444" stop="88145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88900" stop="88497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88301" stop="88063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88300" stop="87822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTTTGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAATAATGGGATTAATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAATGAGATTAGGGGATTGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGG : GTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACCGACACGTAGTATTAGGGGATCGGGTGTCACGAACGGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGTTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGATGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCTTCAACTCAACAGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> E  S  L  V  E  V  G  Y  G  F  S  Y  D  I  R  S  K  L  L  I  E  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  L  L  I  M  R  P  W  Y  K  R  R  R  D  E  L  K  *  W  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  N  E  I  R  G  L  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S   : G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  R  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  I  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  M  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  F  V  E  C  S  K  R  V  I  V  F  N  S  T  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  N  L  W  W  R  *  V  M  V  S  L  T  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  C  *  *  *  G  L  G  I  K  E  G  V  M  N  *  N  N  G  I  N  D  V  L  V  R  K  K  A  *  *  I  D  G  M  R  L  G  D  W  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  S  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  :  V  S  R  T  D  T  *  Y  *  G  I  G  C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  G  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  L  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  V  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  *  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  V  Y  L  W  S  A  A  N  V  S  S  S  S  T  Q  Q  *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  L  L  R  Y  S  *  *  T  L  N  R  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  F  V  N  N  E  A  L  V  *  K  K  A  *  *  T  K  I  M  G  L  M  M  S  W  *  E  R  R  L  D  E  L  M  E  *  D  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  *  H  V  V  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G :   C  H  E  P  T  R  S  I  R  G  S  G  V  T  N  R  H  V  V  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  H  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  S  Q  M  S  M  V  L  R  F  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  D  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  L  F  I  C  G  V  Q  Q  T  C  H  R  L  Q  L  N  S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88037" stop="87822"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FYDITWYILISILSWPMISTQYPCFVLTPTFMFSSCLFVECSKRVIVFNSTVIQASLTTSEIQGELMLLAWT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="87974" PGL_stop="88311"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87974" e_stop="88311"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="87974" e_stop="88311" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87974" stop="88311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACATCAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAACCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCAATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGGTTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  S  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  N  L  N  T  I  L  I  W  E  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  Q  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F  V  T  P  D   </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  H  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  T  S  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  N  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  G  S  *  H  P  I  </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  I  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0129D14.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="94840" PGL_stop="97113"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94840" e_stop="95095"/>
            <exon e_start="95437" e_stop="95735"/>
            <exon e_start="95819" e_stop="95963"/>
            <exon e_start="96773" e_stop="97113"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.832" e_score="0.977"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="0.983"/>
          <exon-intron don_prob="0.974" acc_prob="0.877" e_score="0.986"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="94840" e_stop="95095" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.832">
            <gDNA_intron_boundary i_start="95096" i_stop="95436" i_length="341"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="95437" e_stop="95735" e_length="299"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="95736" i_stop="95818" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="95819" e_stop="95963" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.974" acc_prob="0.877">
            <gDNA_intron_boundary i_start="95964" i_stop="96772" i_length="809"/>
          </intron>
          <exon e_serial="4" e_score="0.965">
            <gDNA_exon_boundary e_start="96773" e_stop="97113" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94840" stop="95095"/>
              <exon start="95437" stop="95735"/>
              <exon start="95819" stop="95963"/>
              <exon start="96773" stop="96877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94989" stop="95095"/>
              <exon start="95437" stop="95735"/>
              <exon start="95819" stop="95963"/>
              <exon start="96773" stop="97113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAGACACGCAGACGTCGACGACAAGGGAAGTGGAGGAGGAAGTGGTGGGGCAGGATGCGGAGGAGAGAGTTGATAACGAAGATACATTGATACAGAAGTCGAAGGAGAGCTATTACTTGCAGCTGACGCTCGCTAAAAAGCTTGTAGAGCAAGCAATGCTTGCTTCTGGAGAGCCTATTCTTCTGCAGGAGTGCAAAAATATCAAGGGCCTTGGTGGATCTTCTGATGCTCAAACTGTATCTTATCGTTTATGG : GTGAGTGGTTCGTTGTCTTATGCTGATAAGATTTCTGATGGGTTTTACAACATATTAGGAATGAATCCATATTTGTGGGTTATGTGTAATGCCACAGAGGATGGTAAACAAATACCATCTCTAATGGCATTAAAAGGGATTGAACCCAGTGAGACATCAATGGAGGTTGTTCTTATTGATAGGCGTGGGGATTCAATGCTCAGGGAATTAGAAGATAAAGCTCAAGAAATTTACTTTGCTGCTGAGAATACATTAGTCTTGGCAGAAAACCTTGGCAAGCTTGTCGCTGTCTATATGGG : GGGCTCTTTTCCGGTGGAACAAGGTGATCTTCATCAGCGGTGGCAAGCTGTTAGCAAGAGATTACAAGATCTGCAGAAGTGCATTGTGCTACCAATTGGCAGTTTCTCCTCAGGACTTTGCAGGCATAGAGCTATTCTGTTCAAG : AAATTGGCAGATTACGTAGGTTTGCCTTGTAGGATAGCTCGAGGTTGCAAGTATTGTGTCGCAGATCACCGGTCTTCTTGTCTGGTAATAATTGAGGACGACAGAAGATTGTCAAGGTAAAACATCTTATCCACTATCTCTTCAATCAAAGTAGTTATCTCCTCTAAGGCTCTAACCATCAACAAGTATTTTCTCCTTAGCGGTTTTGGTTTATGTTTCAAATGTATCTCCAATATTTTAATCTGATATAATATTTGAGACCTCATTATTGGTTACTTCGTACTTGACATTTCTTTCAGACTTTAATTGTGATTTCATGAGTATTTAATAAGATTAAAGTA</gDNA_template>
            <first_frame> *  R  H  A  D  V  D  D  K  G  S  G  G  G  S  G  G  A  G  C  G  G  E  S  *  *  R  R  Y  I  D  T  E  V  E  G  E  L  L  L  A  A  D  A  R  *  K  A  C  R  A  S  N  A  C  F  W  R  A  Y  S  S  A  G  V  Q  K  Y  Q  G  P  W  W  I  F  *  C  S  N  C  I  L  S  F  M   : G  E  W  F  V  V  L  C  *  *  D  F  *  W  V  L  Q  H  I  R  N  E  S  I  F  V  G  Y  V  *  C  H  R  G  W  *  T  N  T  I  S  N  G  I  K  R  D  *  T  Q  *  D  I  N  G  G  C  S  Y  *  *  A  W  G  F  N  A  Q  G  I  R  R  *  S  S  R  N  L  L  C  C  *  E  Y  I  S  L  G  R  K  P  W  Q  A  C  R  C  L  Y  G  :  G  L  F  S  G  G  T  R  *  S  S  S  A  V  A  S  C  *  Q  E  I  T  R  S  A  E  V  H  C  A  T  N  W  Q  F  L  L  R  T  L  Q  A  *  S  Y  S  V  Q   : E  I  G  R  L  R  R  F  A  L  *  D  S  S  R  L  Q  V  L  C  R  R  S  P  V  F  L  S  G  N  N  *  G  R  Q  K  I  V  K  V  K  H  L  I  H  Y  L  F  N  Q  S  S  Y  L  L  *  G  S  N  H  Q  Q  V  F  S  P  *  R  F  W  F  M  F  Q  M  Y  L  Q  Y  F  N  L  I  *  Y  L  R  P  H  Y  W  L  L  R  T  *  H  F  F  Q  T  L  I  V  I  S  *  V  F  N  K  I  K  V </first_frame>
            <second_frame>  K  D  T  Q  T  S  T  T  R  E  V  E  E  E  V  V  G  Q  D  A  E  E  R  V  D  N  E  D  T  L  I  Q  K  S  K  E  S  Y  Y  L  Q  L  T  L  A  K  K  L  V  E  Q  A  M  L  A  S  G  E  P  I  L  L  Q  E  C  K  N  I  K  G  L  G  G  S  S  D  A  Q  T  V  S  Y  R  L  W  :  V  S  G  S  L  S  Y  A  D  K  I  S  D  G  F  Y  N  I  L  G  M  N  P  Y  L  W  V  M  C  N  A  T  E  D  G  K  Q  I  P  S  L  M  A  L  K  G  I  E  P  S  E  T  S  M  E  V  V  L  I  D  R  R  G  D  S  M  L  R  E  L  E  D  K  A  Q  E  I  Y  F  A  A  E  N  T  L  V  L  A  E  N  L  G  K  L  V  A  V  Y  M  G :   G  S  F  P  V  E  Q  G  D  L  H  Q  R  W  Q  A  V  S  K  R  L  Q  D  L  Q  K  C  I  V  L  P  I  G  S  F  S  S  G  L  C  R  H  R  A  I  L  F  K  :  K  L  A  D  Y  V  G  L  P  C  R  I  A  R  G  C  K  Y  C  V  A  D  H  R  S  S  C  L  V  I  I  E  D  D  R  R  L  S  R  *  N  I  L  S  T  I  S  S  I  K  V  V  I  S  S  K  A  L  T  I  N  K  Y  F  L  L  S  G  F  G  L  C  F  K  C  I  S  N  I  L  I  *  Y  N  I  *  D  L  I  I  G  Y  F  V  L  D  I  S  F  R  L  *  L  *  F  H  E  Y  L  I  R  L  K   </second_frame>
            <third_frame>   K  T  R  R  R  R  R  Q  G  K  W  R  R  K  W  W  G  R  M  R  R  R  E  L  I  T  K  I  H  *  Y  R  S  R  R  R  A  I  T  C  S  *  R  S  L  K  S  L  *  S  K  Q  C  L  L  L  E  S  L  F  F  C  R  S  A  K  I  S  R  A  L  V  D  L  L  M  L  K  L  Y  L  I  V  Y  G :   *  V  V  R  C  L  M  L  I  R  F  L  M  G  F  T  T  Y  *  E  *  I  H  I  C  G  L  C  V  M  P  Q  R  M  V  N  K  Y  H  L  *  W  H  *  K  G  L  N  P  V  R  H  Q  W  R  L  F  L  L  I  G  V  G  I  Q  C  S  G  N  *  K  I  K  L  K  K  F  T  L  L  L  R  I  H  *  S  W  Q  K  T  L  A  S  L  S  L  S  I  W   : G  A  L  F  R  W  N  K  V  I  F  I  S  G  G  K  L  L  A  R  D  Y  K  I  C  R  S  A  L  C  Y  Q  L  A  V  S  P  Q  D  F  A  G  I  E  L  F  C  S  R :   N  W  Q  I  T  *  V  C  L  V  G  *  L  E  V  A  S  I  V  S  Q  I  T  G  L  L  V  W  *  *  L  R  T  T  E  D  C  Q  G  K  T  S  Y  P  L  S  L  Q  S  K  *  L  S  P  L  R  L  *  P  S  T  S  I  F  S  L  A  V  L  V  Y  V  S  N  V  S  P  I  F  *  S  D  I  I  F  E  T  S  L  L  V  T  S  Y  L  T  F  L  S  D  F  N  C  D  F  M  S  I  *  *  D  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94841" stop="95095"/>
                    <exon start="95437" stop="95735"/>
                    <exon start="95819" stop="95963"/>
                    <exon start="96773" stop="96892"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDTQTSTTREVEEEVVGQDAEERVDNEDTLIQKSKESYYLQLTLAKKLVEQAMLASGEPILLQECKNIKGLGGSSDAQTVSYRLWVSGSLSYADKISDGFYNILGMNPYLWVMCNATEDGKQIPSLMALKGIEPSETSMEVVLIDRRGDSMLRELEDKAQEIYFAAENTLVLAENLGKLVAVYMGGSFPVEQGDLHQRWQAVSKRLQDLQKCIVLPIGSFSSGLCRHRAILFKKLADYVGLPCRIARGCKYCVADHRSSCLVIIEDDRRLSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="97319" PGL_stop="99463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97319" e_stop="97485"/>
            <exon e_start="97805" e_stop="98224"/>
            <exon e_start="98329" e_stop="98369"/>
            <exon e_start="98881" e_stop="98949"/>
            <exon e_start="99437" e_stop="99463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.864" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97319" e_stop="97485" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.864" acc_prob="0.972">
            <gDNA_intron_boundary i_start="97486" i_stop="97804" i_length="319"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97805" e_stop="98224" e_length="420"/>
          </exon>
          <intron i_serial="2" don_prob="0.796" acc_prob="0.999">
            <gDNA_intron_boundary i_start="98225" i_stop="98328" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98329" e_stop="98369" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.960">
            <gDNA_intron_boundary i_start="98370" i_stop="98880" i_length="511"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98881" e_stop="98949" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="98950" i_stop="99436" i_length="487"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="99437" e_stop="99463" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97319" stop="97485"/>
              <exon start="97805" stop="98224"/>
              <exon start="98329" stop="98369"/>
              <exon start="98881" stop="98949"/>
              <exon start="99437" stop="99463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97319" stop="97485"/>
              <exon start="97805" stop="98224"/>
              <exon start="98329" stop="98363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTCCAGATTCCTCTATCAATGGAGGTGTATTGTCTCGTGTGCCTTCACCACTTCAAGTATCTCATTTGACAGAGTTTCAACAACCTTATATGGATAGTGACATAAGTAATCAGTTACTGCATTCAAATGACACATTTGCTGCTCCAGAAAATGCTTTGCATACAG : ACCCCCATGTTGAGAGTAAACATGTGAAGGGAATTGTTGTCAGTGATAAGCCAAAATTTCCAAATGATCCACTTTACCAACCTTATCAAGCTTTGGAAGCTAAGCCATGTGAAGTTCTTGTTGCGGCTGAAACAGCAGGAGATGAGAATTCTAGACCTAGAGAAGACAAAATTATTATCAGGCAGACTTACAAGAAGGAGGTTGTTCTGTCCAAAAATTCACCATTGCAATCTGGCAGACCGCCAAAATCTACTTTAATAGGCAAAATGGATGTAATGGAGCCTGGAGGTAGAACTGGGAACCGTGAGAAACATCCGACAACAACAAATCCAAGATATCTGCATCTTGAACCTTTTCTTGCAATGGACTGGCTTGAGATCTCATGGGATGAATTACATATAAAAGAGCGTGTAGGAGCTG : GTTCATTTGGAACAGTACATCGTGCTGAATGGAATGGATCG : GATGTTGCAGTCAAGCTGCTTACTGTCCAGGATTTTCATGATGATCAGTTGAAGGAGTTTTTAAGGGAG : GTTGCAATCATGAAACGCGTCCGTCAT</gDNA_template>
            <first_frame> W  S  R  F  L  Y  Q  W  R  C  I  V  S  C  A  F  T  T  S  S  I  S  F  D  R  V  S  T  T  L  Y  G  *  *  H  K  *  S  V  T  A  F  K  *  H  I  C  C  S  R  K  C  F  A  Y  R :   P  P  C  *  E  *  T  C  E  G  N  C  C  Q  *  *  A  K  I  S  K  *  S  T  L  P  T  L  S  S  F  G  S  *  A  M  *  S  S  C  C  G  *  N  S  R  R  *  E  F  *  T  *  R  R  Q  N  Y  Y  Q  A  D  L  Q  E  G  G  C  S  V  Q  K  F  T  I  A  I  W  Q  T  A  K  I  Y  F  N  R  Q  N  G  C  N  G  A  W  R  *  N  W  E  P  *  E  T  S  D  N  N  K  S  K  I  S  A  S  *  T  F  S  C  N  G  L  A  *  D  L  M  G  *  I  T  Y  K  R  A  C  R  S  W :   F  I  W  N  S  T  S  C  *  M  E  W  I   : G  C  C  S  Q  A  A  Y  C  P  G  F  S  *  *  S  V  E  G  V  F  K  G   : G  C  N  H  E  T  R  P  S  </first_frame>
            <second_frame>  G  P  D  S  S  I  N  G  G  V  L  S  R  V  P  S  P  L  Q  V  S  H  L  T  E  F  Q  Q  P  Y  M  D  S  D  I  S  N  Q  L  L  H  S  N  D  T  F  A  A  P  E  N  A  L  H  T   : D  P  H  V  E  S  K  H  V  K  G  I  V  V  S  D  K  P  K  F  P  N  D  P  L  Y  Q  P  Y  Q  A  L  E  A  K  P  C  E  V  L  V  A  A  E  T  A  G  D  E  N  S  R  P  R  E  D  K  I  I  I  R  Q  T  Y  K  K  E  V  V  L  S  K  N  S  P  L  Q  S  G  R  P  P  K  S  T  L  I  G  K  M  D  V  M  E  P  G  G  R  T  G  N  R  E  K  H  P  T  T  T  N  P  R  Y  L  H  L  E  P  F  L  A  M  D  W  L  E  I  S  W  D  E  L  H  I  K  E  R  V  G  A   : G  S  F  G  T  V  H  R  A  E  W  N  G  S  :  D  V  A  V  K  L  L  T  V  Q  D  F  H  D  D  Q  L  K  E  F  L  R  E  :  V  A  I  M  K  R  V  R  H </second_frame>
            <third_frame>   V  Q  I  P  L  S  M  E  V  Y  C  L  V  C  L  H  H  F  K  Y  L  I  *  Q  S  F  N  N  L  I  W  I  V  T  *  V  I  S  Y  C  I  Q  M  T  H  L  L  L  Q  K  M  L  C  I  Q  :  T  P  M  L  R  V  N  M  *  R  E  L  L  S  V  I  S  Q  N  F  Q  M  I  H  F  T  N  L  I  K  L  W  K  L  S  H  V  K  F  L  L  R  L  K  Q  Q  E  M  R  I  L  D  L  E  K  T  K  L  L  S  G  R  L  T  R  R  R  L  F  C  P  K  I  H  H  C  N  L  A  D  R  Q  N  L  L  *  *  A  K  W  M  *  W  S  L  E  V  E  L  G  T  V  R  N  I  R  Q  Q  Q  I  Q  D  I  C  I  L  N  L  F  L  Q  W  T  G  L  R  S  H  G  M  N  Y  I  *  K  S  V  *  E  L  :  V  H  L  E  Q  Y  I  V  L  N  G  M  D  R :   M  L  Q  S  S  C  L  L  S  R  I  F  M  M  I  S  *  R  S  F  *  G  R :   L  Q  S  *  N  A  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97320" stop="97485"/>
                    <exon start="97805" stop="98224"/>
                    <exon start="98329" stop="98369"/>
                    <exon start="98881" stop="98949"/>
                    <exon start="99437" stop="99463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPDSSINGGVLSRVPSPLQVSHLTEFQQPYMDSDISNQLLHSNDTFAAPENALHTDPHVESKHVKGIVVSDKPKFPNDPLYQPYQALEAKPCEVLVAAETAGDENSRPREDKIIIRQTYKKEVVLSKNSPLQSGRPPKSTLIGKMDVMEPGGRTGNREKHPTTTNPRYLHLEPFLAMDWLEISWDELHIKERVGAGSFGTVHRAEWNGSDVAVKLLTVQDFHDDQLKEFLREVAIMKRVRH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="100007" PGL_stop="102320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100007" e_stop="100040"/>
            <exon e_start="101380" e_stop="101511"/>
            <exon e_start="101610" e_stop="101704"/>
            <exon e_start="101838" e_stop="102320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.727" acc_prob="0.794" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="100007" e_stop="100040" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100041" i_stop="101379" i_length="1339"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101380" e_stop="101511" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.727" acc_prob="0.794">
            <gDNA_intron_boundary i_start="101512" i_stop="101609" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101610" e_stop="101704" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.962">
            <gDNA_intron_boundary i_start="101705" i_stop="101837" i_length="133"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="101838" e_stop="102320" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100007" stop="100040"/>
              <exon start="101380" stop="101511"/>
              <exon start="101610" stop="101704"/>
              <exon start="101838" stop="102227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101407" stop="101511"/>
              <exon start="101610" stop="101704"/>
              <exon start="101838" stop="102320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTTCATATCATCAAAATCAGTTGCTGGAACT : CCTGAATGGATGGCCCCCGAATTTCTCCGTGGAGAACCCTCAAATGAGAAGTCTGATGTCTATAGCTTTGGTGTAATATTATGGGAGCTTGTCACCATGCAACAGCCTTGGAATGGACTGAGCCCTGCGCAG : GTAGTTGGTGCTGTAGCTTTCCAGAACAGGAGGCTCACTGTTCCACAGAACACTTCTCCAATGTTGGCGTCTCTAATGGAAGCCTGCTGGAATGA : TGACCCGGTACAACGCCCATCCTTCGCTAGCATTGTGGATACATTAAAGAAACTACTCAAGTCTCCACTACAGTTGATTCAGATGGGAGGAACAATGAAGAGTTAAGATACTCTCTCCACTTATCTAGGAGAAGAATAAATTCATCATAGTTCGAAGATACATAGTTTACGTAACGCTGACGAAATCCGGTAAAACTTTGCCCAACAACTGCAAATATGTTGGCTCTCTTCAACTTTTTGAATGATAACAAGCCTCTGTTAGTTCCAGTTATAGATAAAGAGGCATTTCTAAAGCTGTTTAATTTCTTGCAAGAAACTACTCTAAAACTTTGTCAACAACAAATGTGAAATTATAATTATGTAGTAGTATTTGGAGAAGTATTTATTCCCTGTAGAAGTCTAAGATTATGTAGCATCCGGGGAAGTCTTTATTCTAATTGCAGCAATAATAATATAGAAAATGTCAGTTATTTATGGTTTATC</gDNA_template>
            <first_frame> Y  V  H  I  I  K  I  S  C  W  N   : S  *  M  D  G  P  R  I  S  P  W  R  T  L  K  *  E  V  *  C  L  *  L  W  C  N  I  M  G  A  C  H  H  A  T  A  L  E  W  T  E  P  C  A   : G  S  W  C  C  S  F  P  E  Q  E  A  H  C  S  T  E  H  F  S  N  V  G  V  S  N  G  S  L  L  E  *  :  *  P  G  T  T  P  I  L  R  *  H  C  G  Y  I  K  E  T  T  Q  V  S  T  T  V  D  S  D  G  R  N  N  E  E  L  R  Y  S  L  H  L  S  R  R  R  I  N  S  S  *  F  E  D  T  *  F  T  *  R  *  R  N  P  V  K  L  C  P  T  T  A  N  M  L  A  L  F  N  F  L  N  D  N  K  P  L  L  V  P  V  I  D  K  E  A  F  L  K  L  F  N  F  L  Q  E  T  T  L  K  L  C  Q  Q  Q  M  *  N  Y  N  Y  V  V  V  F  G  E  V  F  I  P  C  R  S  L  R  L  C  S  I  R  G  S  L  Y  S  N  C  S  N  N  N  I  E  N  V  S  Y  L  W  F  I </first_frame>
            <second_frame>  T  F  I  S  S  K  S  V  A  G  T  :  P  E  W  M  A  P  E  F  L  R  G  E  P  S  N  E  K  S  D  V  Y  S  F  G  V  I  L  W  E  L  V  T  M  Q  Q  P  W  N  G  L  S  P  A  Q  :  V  V  G  A  V  A  F  Q  N  R  R  L  T  V  P  Q  N  T  S  P  M  L  A  S  L  M  E  A  C  W  N  D :   D  P  V  Q  R  P  S  F  A  S  I  V  D  T  L  K  K  L  L  K  S  P  L  Q  L  I  Q  M  G  G  T  M  K  S  *  D  T  L  S  T  Y  L  G  E  E  *  I  H  H  S  S  K  I  H  S  L  R  N  A  D  E  I  R  *  N  F  A  Q  Q  L  Q  I  C  W  L  S  S  T  F  *  M  I  T  S  L  C  *  F  Q  L  *  I  K  R  H  F  *  S  C  L  I  S  C  K  K  L  L  *  N  F  V  N  N  K  C  E  I  I  I  M  *  *  Y  L  E  K  Y  L  F  P  V  E  V  *  D  Y  V  A  S  G  E  V  F  I  L  I  A  A  I  I  I  *  K  M  S  V  I  Y  G  L   </second_frame>
            <third_frame>   R  S  Y  H  Q  N  Q  L  L  E  L :   L  N  G  W  P  P  N  F  S  V  E  N  P  Q  M  R  S  L  M  S  I  A  L  V  *  Y  Y  G  S  L  S  P  C  N  S  L  G  M  D  *  A  L  R  R :   *  L  V  L  *  L  S  R  T  G  G  S  L  F  H  R  T  L  L  Q  C  W  R  L  *  W  K  P  A  G  M   : M  T  R  Y  N  A  H  P  S  L  A  L  W  I  H  *  R  N  Y  S  S  L  H  Y  S  *  F  R  W  E  E  Q  *  R  V  K  I  L  S  P  L  I  *  E  K  N  K  F  I  I  V  R  R  Y  I  V  Y  V  T  L  T  K  S  G  K  T  L  P  N  N  C  K  Y  V  G  S  L  Q  L  F  E  *  *  Q  A  S  V  S  S  S  Y  R  *  R  G  I  S  K  A  V  *  F  L  A  R  N  Y  S  K  T  L  S  T  T  N  V  K  L  *  L  C  S  S  I  W  R  S  I  Y  S  L  *  K  S  K  I  M  *  H  P  G  K  S  L  F  *  L  Q  Q  *  *  Y  R  K  C  Q  L  F  M  V  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100008" stop="100040"/>
                    <exon start="101380" stop="101511"/>
                    <exon start="101610" stop="101704"/>
                    <exon start="101838" stop="101943"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWNGLSPAQVVGAVAFQNRRLTVPQNTSPMLASLMEACWNDDPVQRPSFASIVDTLKKLLKSPLQLIQMGGTMKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="104110" PGL_stop="104966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104110" e_stop="104966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="104110" e_stop="104966" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104110" stop="104966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104111" stop="104594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104138" stop="104942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716344" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAATCGAAAAATTCTCAGAGAAACCCAGAAAACGAAAATCGCCATGGATTTTTTCTCCGATAATCACATGTGGCGTGATCTTCTTCTTCAAGCAGTCTTAATTCTCGTAACAATCTTCATGTTCCTTTTCATGTACAACGTTCCCCAGAAGTACTTCTCGAAGCTTCGTCTCCGGAACCGGGCCGATATGCAATCGAAGCGTCATTTTGTTCAAGGAGCTCAACTTCTTTCTCAAGCTAAATCAGCAGCAGCTAAGGATCGATCGAAGTCTACTTCTCTTGCTAAATCTGCTGAAGCTCAAGCCGATTTGGCTATAGCTTTAGACCCGAAAGATGCTGCAGCTCACATACTCAAGGCTTTAGCTCTTGATTTACAGGGGTTTAAGACGTCGGCTCTTGATTCCATTGACGTCGCGCTTTCGCCGCTAGCCGTGAAGTCGTTGTCGGAGCCGGAGAAAGCGGATGCCTTGTTTAAGCGGGCGCAGTTGAGACTGGCTGCGGAACAAGTTGACTCGGTGATTGAGGATTTGAGTCAGTCTGTTAGGTTGAAGGGCGATAATGTGAAGGCTTTTTGCTTGTTGGGCGATTGTTACGAGAAAAAAGGCTTGAAGGAAGAGGCAAGAAAGGCTTATCAGGAAGCTCAAAAGGTTCAGCCAAATTTTGCGCCTGCTCGAGAAGCACTTGACCGTTTGAATTCCGAGTCTTGATCTCTAATTGTTTGTTTCATTTTGTTGTTTTGTTCACTACGTAGTTCAATATAAAGGCAGTTATTATTCACGCTAAAATTAAACATTTGGAGAATTTATAGTTATATCCTTATATTTATATTAACAATGATTAACTTCAGAGGTGATG</gDNA_template>
            <first_frame> T  K  S  K  N  S  Q  R  N  P  E  N  E  N  R  H  G  F  F  L  R  *  S  H  V  A  *  S  S  S  S  S  S  L  N  S  R  N  N  L  H  V  P  F  H  V  Q  R  S  P  E  V  L  L  E  A  S  S  P  E  P  G  R  Y  A  I  E  A  S  F  C  S  R  S  S  T  S  F  S  S  *  I  S  S  S  *  G  S  I  E  V  Y  F  S  C  *  I  C  *  S  S  S  R  F  G  Y  S  F  R  P  E  R  C  C  S  S  H  T  Q  G  F  S  S  *  F  T  G  V  *  D  V  G  S  *  F  H  *  R  R  A  F  A  A  S  R  E  V  V  V  G  A  G  E  S  G  C  L  V  *  A  G  A  V  E  T  G  C  G  T  S  *  L  G  D  *  G  F  E  S  V  C  *  V  E  G  R  *  C  E  G  F  L  L  V  G  R  L  L  R  E  K  R  L  E  G  R  G  K  K  G  L  S  G  S  S  K  G  S  A  K  F  C  A  C  S  R  S  T  *  P  F  E  F  R  V  L  I  S  N  C  L  F  H  F  V  V  L  F  T  T  *  F  N  I  K  A  V  I  I  H  A  K  I  K  H  L  E  N  L  *  L  Y  P  Y  I  Y  I  N  N  D  *  L  Q  R  *   </first_frame>
            <second_frame>  P  N  R  K  I  L  R  E  T  Q  K  T  K  I  A  M  D  F  F  S  D  N  H  M  W  R  D  L  L  L  Q  A  V  L  I  L  V  T  I  F  M  F  L  F  M  Y  N  V  P  Q  K  Y  F  S  K  L  R  L  R  N  R  A  D  M  Q  S  K  R  H  F  V  Q  G  A  Q  L  L  S  Q  A  K  S  A  A  A  K  D  R  S  K  S  T  S  L  A  K  S  A  E  A  Q  A  D  L  A  I  A  L  D  P  K  D  A  A  A  H  I  L  K  A  L  A  L  D  L  Q  G  F  K  T  S  A  L  D  S  I  D  V  A  L  S  P  L  A  V  K  S  L  S  E  P  E  K  A  D  A  L  F  K  R  A  Q  L  R  L  A  A  E  Q  V  D  S  V  I  E  D  L  S  Q  S  V  R  L  K  G  D  N  V  K  A  F  C  L  L  G  D  C  Y  E  K  K  G  L  K  E  E  A  R  K  A  Y  Q  E  A  Q  K  V  Q  P  N  F  A  P  A  R  E  A  L  D  R  L  N  S  E  S  *  S  L  I  V  C  F  I  L  L  F  C  S  L  R  S  S  I  *  R  Q  L  L  F  T  L  K  L  N  I  W  R  I  Y  S  Y  I  L  I  F  I  L  T  M  I  N  F  R  G  D  </second_frame>
            <third_frame>   Q  I  E  K  F  S  E  K  P  R  K  R  K  S  P  W  I  F  S  P  I  I  T  C  G  V  I  F  F  F  K  Q  S  *  F  S  *  Q  S  S  C  S  F  S  C  T  T  F  P  R  S  T  S  R  S  F  V  S  G  T  G  P  I  C  N  R  S  V  I  L  F  K  E  L  N  F  F  L  K  L  N  Q  Q  Q  L  R  I  D  R  S  L  L  L  L  L  N  L  L  K  L  K  P  I  W  L  *  L  *  T  R  K  M  L  Q  L  T  Y  S  R  L  *  L  L  I  Y  R  G  L  R  R  R  L  L  I  P  L  T  S  R  F  R  R  *  P  *  S  R  C  R  S  R  R  K  R  M  P  C  L  S  G  R  S  *  D  W  L  R  N  K  L  T  R  *  L  R  I  *  V  S  L  L  G  *  R  A  I  M  *  R  L  F  A  C  W  A  I  V  T  R  K  K  A  *  R  K  R  Q  E  R  L  I  R  K  L  K  R  F  S  Q  I  L  R  L  L  E  K  H  L  T  V  *  I  P  S  L  D  L  *  L  F  V  S  F  C  C  F  V  H  Y  V  V  Q  Y  K  G  S  Y  Y  S  R  *  N  *  T  F  G  E  F  I  V  I  S  L  Y  L  Y  *  Q  *  L  T  S  E  V  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104111" stop="104818"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNRKILRETQKTKIAMDFFSDNHMWRDLLLQAVLILVTIFMFLFMYNVPQKYFSKLRLRNRADMQSKRHFVQGAQLLSQAKSAAAKDRSKSTSLAKSAEAQADLAIALDPKDAAAHILKALALDLQGFKTSALDSIDVALSPLAVKSLSEPEKADALFKRAQLRLAAEQVDSVIEDLSQSVRLKGDNVKAFCLLGDCYEKKGLKEEARKAYQEAQKVQPNFAPAREALDRLNSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="105732" PGL_stop="107544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105732" e_stop="106024"/>
            <exon e_start="106303" e_stop="106458"/>
            <exon e_start="106557" e_stop="106712"/>
            <exon e_start="107476" e_stop="107544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.988" e_score="0.994"/>
          <exon-intron don_prob="0.997" acc_prob="0.897" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105732" e_stop="106024" e_length="293"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.985">
            <gDNA_intron_boundary i_start="106025" i_stop="106302" i_length="278"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="106303" e_stop="106458" e_length="156"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.988">
            <gDNA_intron_boundary i_start="106459" i_stop="106556" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106557" e_stop="106712" e_length="156"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.897">
            <gDNA_intron_boundary i_start="106713" i_stop="107475" i_length="763"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="107476" e_stop="107544" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105732" stop="106024"/>
              <exon start="106303" stop="106458"/>
              <exon start="106557" stop="106685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106000" stop="106024"/>
              <exon start="106303" stop="106458"/>
              <exon start="106557" stop="106712"/>
              <exon start="107476" stop="107544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAGTAGAGGAGGAAAAGAGGGCACTTTTGGAGCTGAGGGACTCCCTTAACTATCCCAATGGATCTACGCTAATCAATGAATGGGTTGAAGAAAATTATTGTGCGTGGGCTGCTGTTTCTTGCATCAGGGATCTAAATAATGATGTACATGTTCTTGATATTATTCTTACCAGTAAAAGGGAACTTGGACTTGGAATATGGTATCCTGATGCAAACTTGTTGACTCGTTTCACGCATCTCCAGTCTCTTTATTTATCTGGCAACGCTATTGGCAACTGGATCATGCCAGAAG : CATTATGCAAATTGCGCAACCTGAAGGAATTGGATCTAAGTTTCAACCCTTTAAATGGCGATGCTCTGCCTCATTTTCAAGTATGTAGCCTCGCATCTCTGGAACAGCTGCACCTATCAGGGATTTATCCTAGTTTCCCTTTACCACTGCTCAGAG : CATTGTGCGGACTAAAGAATATGCGGAAACTAGATCTAAGCAACAACAATCTTACAGATGATAGCATGCCACATTGCCTGTTTGATGATCTTTCATACCTTGAAAGCCTAGACTTGTCTGGGAATAACCTTAAGAATTCCCATCACATTCTATCAG : CTTTATGTACACTGCGGAATCTCAAAAGGTTGGATCTGAGCGATAACTTTCTTGATGATGGAAGCATAC</gDNA_template>
            <first_frame> I  S  R  G  G  K  E  G  T  F  G  A  E  G  L  P  *  L  S  Q  W  I  Y  A  N  Q  *  M  G  *  R  K  L  L  C  V  G  C  C  F  L  H  Q  G  S  K  *  *  C  T  C  S  *  Y  Y  S  Y  Q  *  K  G  T  W  T  W  N  M  V  S  *  C  K  L  V  D  S  F  H  A  S  P  V  S  L  F  I  W  Q  R  Y  W  Q  L  D  H  A  R  S :   I  M  Q  I  A  Q  P  E  G  I  G  S  K  F  Q  P  F  K  W  R  C  S  A  S  F  S  S  M  *  P  R  I  S  G  T  A  A  P  I  R  D  L  S  *  F  P  F  T  T  A  Q  S :   I  V  R  T  K  E  Y  A  E  T  R  S  K  Q  Q  Q  S  Y  R  *  *  H  A  T  L  P  V  *  *  S  F  I  P  *  K  P  R  L  V  W  E  *  P  *  E  F  P  S  H  S  I  S :   F  M  Y  T  A  E  S  Q  K  V  G  S  E  R  *  L  S  *  *  W  K  H   </first_frame>
            <second_frame>  L  V  E  E  E  K  R  A  L  L  E  L  R  D  S  L  N  Y  P  N  G  S  T  L  I  N  E  W  V  E  E  N  Y  C  A  W  A  A  V  S  C  I  R  D  L  N  N  D  V  H  V  L  D  I  I  L  T  S  K  R  E  L  G  L  G  I  W  Y  P  D  A  N  L  L  T  R  F  T  H  L  Q  S  L  Y  L  S  G  N  A  I  G  N  W  I  M  P  E   : A  L  C  K  L  R  N  L  K  E  L  D  L  S  F  N  P  L  N  G  D  A  L  P  H  F  Q  V  C  S  L  A  S  L  E  Q  L  H  L  S  G  I  Y  P  S  F  P  L  P  L  L  R   : A  L  C  G  L  K  N  M  R  K  L  D  L  S  N  N  N  L  T  D  D  S  M  P  H  C  L  F  D  D  L  S  Y  L  E  S  L  D  L  S  G  N  N  L  K  N  S  H  H  I  L  S   : A  L  C  T  L  R  N  L  K  R  L  D  L  S  D  N  F  L  D  D  G  S  I  </second_frame>
            <third_frame>   *  *  R  R  K  R  G  H  F  W  S  *  G  T  P  L  T  I  P  M  D  L  R  *  S  M  N  G  L  K  K  I  I  V  R  G  L  L  F  L  A  S  G  I  *  I  M  M  Y  M  F  L  I  L  F  L  P  V  K  G  N  L  D  L  E  Y  G  I  L  M  Q  T  C  *  L  V  S  R  I  S  S  L  F  I  Y  L  A  T  L  L  A  T  G  S  C  Q  K  :  H  Y  A  N  C  A  T  *  R  N  W  I  *  V  S  T  L  *  M  A  M  L  C  L  I  F  K  Y  V  A  S  H  L  W  N  S  C  T  Y  Q  G  F  I  L  V  S  L  Y  H  C  S  E  :  H  C  A  D  *  R  I  C  G  N  *  I  *  A  T  T  I  L  Q  M  I  A  C  H  I  A  C  L  M  I  F  H  T  L  K  A  *  T  C  L  G  I  T  L  R  I  P  I  T  F  Y  Q  :  L  Y  V  H  C  G  I  S  K  G  W  I  *  A  I  T  F  L  M  M  E  A  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105733" stop="106024"/>
                    <exon start="106303" stop="106458"/>
                    <exon start="106557" stop="106712"/>
                    <exon start="107476" stop="107543"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVEEEKRALLELRDSLNYPNGSTLINEWVEENYCAWAAVSCIRDLNNDVHVLDIILTSKRELGLGIWYPDANLLTRFTHLQSLYLSGNAIGNWIMPEALCKLRNLKELDLSFNPLNGDALPHFQVCSLASLEQLHLSGIYPSFPLPLLRALCGLKNMRKLDLSNNNLTDDSMPHCLFDDLSYLESLDLSGNNLKNSHHILSALCTLRNLKRLDLSDNFLDDGSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="119647" PGL_stop="111174"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119647" e_stop="119493"/>
            <exon e_start="119400" e_stop="119232"/>
            <exon e_start="118114" e_stop="117954"/>
            <exon e_start="117874" e_stop="117770"/>
            <exon e_start="117204" e_stop="116404"/>
            <exon e_start="116313" e_stop="116124"/>
            <exon e_start="115813" e_stop="115630"/>
            <exon e_start="112693" e_stop="112110"/>
            <exon e_start="111192" e_stop="111174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.875" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.142" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.065" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.968" e_score="0.998"/>
          <exon-intron don_prob="0.898" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119647" e_stop="119493" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.875" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119492" i_stop="119401" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119400" e_stop="119232" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="119231" i_stop="118115" i_length="1117"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="118114" e_stop="117954" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.142" acc_prob="0.996">
            <gDNA_intron_boundary i_start="117953" i_stop="117875" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117874" e_stop="117770" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.065">
            <gDNA_intron_boundary i_start="117769" i_stop="117205" i_length="565"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="117204" e_stop="116404" e_length="801"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.968">
            <gDNA_intron_boundary i_start="116403" i_stop="116314" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="116313" e_stop="116124" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.898" acc_prob="0.952">
            <gDNA_intron_boundary i_start="116123" i_stop="115814" i_length="310"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="115813" e_stop="115630" e_length="184"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="115629" i_stop="112694" i_length="2936"/>
          </intron>
          <exon e_serial="8" e_score="0.998">
            <gDNA_exon_boundary e_start="112693" e_stop="112110" e_length="584"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112109" i_stop="111193" i_length="917"/>
          </intron>
          <exon e_serial="9" e_score="0.789">
            <gDNA_exon_boundary e_start="111192" e_stop="111174" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119647" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119645" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119642" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117770"/>
              <exon start="117204" stop="117184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119640" stop="119493"/>
              <exon start="119400" stop="119315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119637" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="118025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119631" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117770"/>
              <exon start="117204" stop="117053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119628" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117770"/>
              <exon start="117204" stop="116404"/>
              <exon start="116313" stop="116124"/>
              <exon start="115813" stop="115630"/>
              <exon start="112693" stop="112110"/>
              <exon start="111192" stop="111174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119616" stop="119493"/>
              <exon start="119400" stop="119248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119589" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117770"/>
              <exon start="117204" stop="117141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119585" stop="119493"/>
              <exon start="119400" stop="119232"/>
              <exon start="118114" stop="117954"/>
              <exon start="117874" stop="117770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116991" stop="116458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116590" stop="116404"/>
              <exon start="116313" stop="116124"/>
              <exon start="115813" stop="115630"/>
              <exon start="112693" stop="112523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGAGTCCTCTGTGTGTGTGTGAGAAAAAAGGAAAAAATGCACGGAAGACCACGCAAAGCTCCAACTCTAGAAGAGCAAGAAGCTTTTAGTGTCAAAGCTTCCAAATTACGGTCTCTACAATCACAATTTCTCCAATTTCATCACGCCAAAAT : ATATACAAAGGAAGCTTTAGATGTAAGTGCAAAGTTGTTAGAGTCGAACCCTGAGTATTATACTGCTTGGAATTATAGAAAACTTGCTGTCCAGCATAATTTGAATCTACCTGAGGTGGAGAACAATGAGGAGACTGTTAAGTCAATTCTTGATGAAGAACTCAGATTG : GTAGAGAATGCGTTGAGGAGGAATTTCAAGTCTTACGGAGCATGGCATCACCGTAAATGGGTGCTGAGCAAAGGTCATTCTTCCACAGACAAGGAATTGTTGCTTCTGGGTAAGTTCCAGAAGGCAGACTCCCGCAATTTTCATGCATGGAATTATAGAAG : GTTCGTCACAACATTGAAGAACATACCAAATGAGAAGGAGCTAGAATACACTACCGACATGATATATGATAATTTCAGCAACTATTCTGCTTGGCACAACCGCAG : TGTTCTTCTTTCTCATTTGCTGAAGGAAAAAGCAAAAGGATATTCTCCCAAGGACAATGTATTTACAGAAGAGTACGAGTTTGTGCGTCATGCTCTTTTCACAGATCCAGATGATCAAAGTGGTTGGTTTTATCATCTGTGGCTTCTTGATCAGACAGTTAAACTAGAGACATTGTTGGTTTCTTCATGGCCACCACATGGCTGTAATCTTTCTTTATCCACGGATGGATCGTTTGGAGATTGCTCTTTATCACCCTTTACGAGTCTTCAGACTAATACTAGAACACTTCCACTCATTCTCTATTTCAGCGAAGCTGTTGAGAATATATGCTCATCTACAGTAGTAATCGAATGTGAAAATATTGCGAGTAATGAGCTCGTCTGGAGATCACTCTCAGGAGATGGAGCTGGGTCTGCTCAAGCTTGGTTGACATATCTTAATTTCCCAGAGGAACATGCACATTCTGAAAAGGCTTACCAAGTAAAGGTCAGCCTTGCTCATTCTCGAGGCATTTTCTCTTCAACTGGTGTTCATCATGGAGATTCTTCTCATATTGAATTTTCAGTGTCTGTACCACCTCATCGTTCAGAACATGTTGATTTAAATAATGAAGGGAAAATCTCTTGGAGTGATGAAAGTTTCTGCACTCATGACACACAGTTTCTTGAGTCAGCTCTGATTAACTTGTTCCATCTGGAAAGAACCAAGATAGATGAAACAGTGGTGGACTATCAGTGGAATATTACGACCATCAATAATGAGATATCACACTATAGGGAGTTGTTATCAACAATGAACTG : TAAAATTGGGAAGCTGACACTTGCCAGACTGCTGATTGCCCATGACACCTTAATGTCATATACTGGCACTAGTCACAGAAATGTTAGCCACCATGCAGAAGTTCTTCAACTTTATGACGATTTAAAGAAAATGGACCCAGCACATCTCCACTACTACCAGGATGAGTACAGTATAGTACTTCTGAAACAG : ACAATCTCCAATCAAGAATTGTTGTTGAAGCACTGCCGTAAATATAGGGATCCATCTTCTCCAAGAATCAATAATTTCTGTCTGCGGCTTAATAATCTCTCACTTTCACGTATTGGGTCTATGGAGCAACTTTTGTGGGTCCAAGTATTAGATCTCAGCCACAACCAACTTAAGACACTTGAAG : GCTTGGAGGTGATGCAACTTCTCTCCTGCTTGAATGTTAGCTACAATAAACTCTGCAGTTTTACTGCATTGGAGCCTTTGAAACTGCTAAGGTCACTGAAAGTCTTAGATATCTCTTACAACGAGATTGGAGCGCATTCTATTGACACGAGGAGGTATTTGTGCTCTTCCCCTCTTAACCATAGAAGTGGAGGTGACTGGAAAACTGAGGAATCTGAGATCCATTGCGTTGAGGTGGCTGATAATTGGGAAGCCTATGCTATTTTTAAAGACTTGAACTTGATACAATTAGATCTTAAAGGAAATGCAGTTTCCGATGAAAAGATACAATCACTTCTAATTAAGCTATTACCATCACTAAAGTGGCTTGATGGTGAAAGTTGCCGATAATTAAAAGTTACATCTCCGTCACTGTTACTGAATTTCTCTACAGAACAGACAAGGGTAATCTTTTGTTACTATTATGAATTTTAGATATCTGATGCACGGAACTGTTTTTGTACCATGTAGTTGTTGCAAGACTTGCTTGTAATTGTTTGGCTTTTTCAGATGATCTCTATTTATCAGCACCTAAACAGAGATTTT : GAAAAAAAAAAAAAATCCT</gDNA_template>
            <first_frame> F  *  V  L  C  V  C  V  R  K  K  E  K  M  H  G  R  P  R  K  A  P  T  L  E  E  Q  E  A  F  S  V  K  A  S  K  L  R  S  L  Q  S  Q  F  L  Q  F  H  H  A  K  I :   Y  T  K  E  A  L  D  V  S  A  K  L  L  E  S  N  P  E  Y  Y  T  A  W  N  Y  R  K  L  A  V  Q  H  N  L  N  L  P  E  V  E  N  N  E  E  T  V  K  S  I  L  D  E  E  L  R  L  :  V  E  N  A  L  R  R  N  F  K  S  Y  G  A  W  H  H  R  K  W  V  L  S  K  G  H  S  S  T  D  K  E  L  L  L  L  G  K  F  Q  K  A  D  S  R  N  F  H  A  W  N  Y  R  R :   F  V  T  T  L  K  N  I  P  N  E  K  E  L  E  Y  T  T  D  M  I  Y  D  N  F  S  N  Y  S  A  W  H  N  R  S :   V  L  L  S  H  L  L  K  E  K  A  K  G  Y  S  P  K  D  N  V  F  T  E  E  Y  E  F  V  R  H  A  L  F  T  D  P  D  D  Q  S  G  W  F  Y  H  L  W  L  L  D  Q  T  V  K  L  E  T  L  L  V  S  S  W  P  P  H  G  C  N  L  S  L  S  T  D  G  S  F  G  D  C  S  L  S  P  F  T  S  L  Q  T  N  T  R  T  L  P  L  I  L  Y  F  S  E  A  V  E  N  I  C  S  S  T  V  V  I  E  C  E  N  I  A  S  N  E  L  V  W  R  S  L  S  G  D  G  A  G  S  A  Q  A  W  L  T  Y  L  N  F  P  E  E  H  A  H  S  E  K  A  Y  Q  V  K  V  S  L  A  H  S  R  G  I  F  S  S  T  G  V  H  H  G  D  S  S  H  I  E  F  S  V  S  V  P  P  H  R  S  E  H  V  D  L  N  N  E  G  K  I  S  W  S  D  E  S  F  C  T  H  D  T  Q  F  L  E  S  A  L  I  N  L  F  H  L  E  R  T  K  I  D  E  T  V  V  D  Y  Q  W  N  I  T  T  I  N  N  E  I  S  H  Y  R  E  L  L  S  T  M  N  C :   K  I  G  K  L  T  L  A  R  L  L  I  A  H  D  T  L  M  S  Y  T  G  T  S  H  R  N  V  S  H  H  A  E  V  L  Q  L  Y  D  D  L  K  K  M  D  P  A  H  L  H  Y  Y  Q  D  E  Y  S  I  V  L  L  K  Q  :  T  I  S  N  Q  E  L  L  L  K  H  C  R  K  Y  R  D  P  S  S  P  R  I  N  N  F  C  L  R  L  N  N  L  S  L  S  R  I  G  S  M  E  Q  L  L  W  V  Q  V  L  D  L  S  H  N  Q  L  K  T  L  E   : G  L  E  V  M  Q  L  L  S  C  L  N  V  S  Y  N  K  L  C  S  F  T  A  L  E  P  L  K  L  L  R  S  L  K  V  L  D  I  S  Y  N  E  I  G  A  H  S  I  D  T  R  R  Y  L  C  S  S  P  L  N  H  R  S  G  G  D  W  K  T  E  E  S  E  I  H  C  V  E  V  A  D  N  W  E  A  Y  A  I  F  K  D  L  N  L  I  Q  L  D  L  K  G  N  A  V  S  D  E  K  I  Q  S  L  L  I  K  L  L  P  S  L  K  W  L  D  G  E  S  C  R  *  L  K  V  T  S  P  S  L  L  L  N  F  S  T  E  Q  T  R  V  I  F  C  Y  Y  Y  E  F  *  I  S  D  A  R  N  C  F  C  T  M  *  L  L  Q  D  L  L  V  I  V  W  L  F  Q  M  I  S  I  Y  Q  H  L  N  R  D  F  :  E  K  K  K  K  S  </first_frame>
            <second_frame>  S  E  S  S  V  C  V  *  E  K  R  K  K  C  T  E  D  H  A  K  L  Q  L  *  K  S  K  K  L  L  V  S  K  L  P  N  Y  G  L  Y  N  H  N  F  S  N  F  I  T  P  K   : Y  I  Q  R  K  L  *  M  *  V  Q  S  C  *  S  R  T  L  S  I  I  L  L  G  I  I  E  N  L  L  S  S  I  I  *  I  Y  L  R  W  R  T  M  R  R  L  L  S  Q  F  L  M  K  N  S  D  W :   *  R  M  R  *  G  G  I  S  S  L  T  E  H  G  I  T  V  N  G  C  *  A  K  V  I  L  P  Q  T  R  N  C  C  F  W  V  S  S  R  R  Q  T  P  A  I  F  M  H  G  I  I  E   : G  S  S  Q  H  *  R  T  Y  Q  M  R  R  S  *  N  T  L  P  T  *  Y  M  I  I  S  A  T  I  L  L  G  T  T  A   : V  F  F  F  L  I  C  *  R  K  K  Q  K  D  I  L  P  R  T  M  Y  L  Q  K  S  T  S  L  C  V  M  L  F  S  Q  I  Q  M  I  K  V  V  G  F  I  I  C  G  F  L  I  R  Q  L  N  *  R  H  C  W  F  L  H  G  H  H  M  A  V  I  F  L  Y  P  R  M  D  R  L  E  I  A  L  Y  H  P  L  R  V  F  R  L  I  L  E  H  F  H  S  F  S  I  S  A  K  L  L  R  I  Y  A  H  L  Q  *  *  S  N  V  K  I  L  R  V  M  S  S  S  G  D  H  S  Q  E  M  E  L  G  L  L  K  L  G  *  H  I  L  I  S  Q  R  N  M  H  I  L  K  R  L  T  K  *  R  S  A  L  L  I  L  E  A  F  S  L  Q  L  V  F  I  M  E  I  L  L  I  L  N  F  Q  C  L  Y  H  L  I  V  Q  N  M  L  I  *  I  M  K  G  K  S  L  G  V  M  K  V  S  A  L  M  T  H  S  F  L  S  Q  L  *  L  T  C  S  I  W  K  E  P  R  *  M  K  Q  W  W  T  I  S  G  I  L  R  P  S  I  M  R  Y  H  T  I  G  S  C  Y  Q  Q  *  T   : V  K  L  G  S  *  H  L  P  D  C  *  L  P  M  T  P  *  C  H  I  L  A  L  V  T  E  M  L  A  T  M  Q  K  F  F  N  F  M  T  I  *  R  K  W  T  Q  H  I  S  T  T  T  R  M  S  T  V  *  Y  F  *  N  R :   Q  S  P  I  K  N  C  C  *  S  T  A  V  N  I  G  I  H  L  L  Q  E  S  I  I  S  V  C  G  L  I  I  S  H  F  H  V  L  G  L  W  S  N  F  C  G  S  K  Y  *  I  S  A  T  T  N  L  R  H  L  K  :  A  W  R  *  C  N  F  S  P  A  *  M  L  A  T  I  N  S  A  V  L  L  H  W  S  L  *  N  C  *  G  H  *  K  S  *  I  S  L  T  T  R  L  E  R  I  L  L  T  R  G  G  I  C  A  L  P  L  L  T  I  E  V  E  V  T  G  K  L  R  N  L  R  S  I  A  L  R  W  L  I  I  G  K  P  M  L  F  L  K  T  *  T  *  Y  N  *  I  L  K  E  M  Q  F  P  M  K  R  Y  N  H  F  *  L  S  Y  Y  H  H  *  S  G  L  M  V  K  V  A  D  N  *  K  L  H  L  R  H  C  Y  *  I  S  L  Q  N  R  Q  G  *  S  F  V  T  I  M  N  F  R  Y  L  M  H  G  T  V  F  V  P  C  S  C  C  K  T  C  L  *  L  F  G  F  F  R  *  S  L  F  I  S  T  *  T  E  I  L :   K  K  K  K  N  P </second_frame>
            <third_frame>   L  S  P  L  C  V  C  E  K  K  G  K  N  A  R  K  T  T  Q  S  S  N  S  R  R  A  R  S  F  *  C  Q  S  F  Q  I  T  V  S  T  I  T  I  S  P  I  S  S  R  Q  N  :  I  Y  K  G  S  F  R  C  K  C  K  V  V  R  V  E  P  *  V  L  Y  C  L  E  L  *  K  T  C  C  P  A  *  F  E  S  T  *  G  G  E  Q  *  G  D  C  *  V  N  S  *  *  R  T  Q  I   : G  R  E  C  V  E  E  E  F  Q  V  L  R  S  M  A  S  P  *  M  G  A  E  Q  R  S  F  F  H  R  Q  G  I  V  A  S  G  *  V  P  E  G  R  L  P  Q  F  S  C  M  E  L  *  K  :  V  R  H  N  I  E  E  H  T  K  *  E  G  A  R  I  H  Y  R  H  D  I  *  *  F  Q  Q  L  F  C  L  A  Q  P  Q  :  C  S  S  F  S  F  A  E  G  K  S  K  R  I  F  S  Q  G  Q  C  I  Y  R  R  V  R  V  C  A  S  C  S  F  H  R  S  R  *  S  K  W  L  V  L  S  S  V  A  S  *  S  D  S  *  T  R  D  I  V  G  F  F  M  A  T  T  W  L  *  S  F  F  I  H  G  W  I  V  W  R  L  L  F  I  T  L  Y  E  S  S  D  *  Y  *  N  T  S  T  H  S  L  F  Q  R  S  C  *  E  Y  M  L  I  Y  S  S  N  R  M  *  K  Y  C  E  *  *  A  R  L  E  I  T  L  R  R  W  S  W  V  C  S  S  L  V  D  I  S  *  F  P  R  G  T  C  T  F  *  K  G  L  P  S  K  G  Q  P  C  S  F  S  R  H  F  L  F  N  W  C  S  S  W  R  F  F  S  Y  *  I  F  S  V  C  T  T  S  S  F  R  T  C  *  F  K  *  *  R  E  N  L  L  E  *  *  K  F  L  H  S  *  H  T  V  S  *  V  S  S  D  *  L  V  P  S  G  K  N  Q  D  R  *  N  S  G  G  L  S  V  E  Y  Y  D  H  Q  *  *  D  I  T  L  *  G  V  V  I  N  N  E  L  :  *  N  W  E  A  D  T  C  Q  T  A  D  C  P  *  H  L  N  V  I  Y  W  H  *  S  Q  K  C  *  P  P  C  R  S  S  S  T  L  *  R  F  K  E  N  G  P  S  T  S  P  L  L  P  G  *  V  Q  Y  S  T  S  E  T   : D  N  L  Q  S  R  I  V  V  E  A  L  P  *  I  *  G  S  I  F  S  K  N  Q  *  F  L  S  A  A  *  *  S  L  T  F  T  Y  W  V  Y  G  A  T  F  V  G  P  S  I  R  S  Q  P  Q  P  T  *  D  T  *  R :   L  G  G  D  A  T  S  L  L  L  E  C  *  L  Q  *  T  L  Q  F  Y  C  I  G  A  F  E  T  A  K  V  T  E  S  L  R  Y  L  L  Q  R  D  W  S  A  F  Y  *  H  E  E  V  F  V  L  F  P  S  *  P  *  K  W  R  *  L  E  N  *  G  I  *  D  P  L  R  *  G  G  *  *  L  G  S  L  C  Y  F  *  R  L  E  L  D  T  I  R  S  *  R  K  C  S  F  R  *  K  D  T  I  T  S  N  *  A  I  T  I  T  K  V  A  *  W  *  K  L  P  I  I  K  S  Y  I  S  V  T  V  T  E  F  L  Y  R  T  D  K  G  N  L  L  L  L  L  *  I  L  D  I  *  C  T  E  L  F  L  Y  H  V  V  V  A  R  L  A  C  N  C  L  A  F  S  D  D  L  Y  L  S  A  P  K  Q  R  F   : *  K  K  K  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119641" stop="119493"/>
                    <exon start="119400" stop="119232"/>
                    <exon start="118114" stop="117954"/>
                    <exon start="117874" stop="117770"/>
                    <exon start="117204" stop="116404"/>
                    <exon start="116313" stop="116124"/>
                    <exon start="115813" stop="115630"/>
                    <exon start="112693" stop="112305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>2145</number_coding_nucleotides>
                  <number_encoded_amino_acids>715</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLCVCVRKKEKMHGRPRKAPTLEEQEAFSVKASKLRSLQSQFLQFHHAKIYTKEALDVSAKLLESNPEYYTAWNYRKLAVQHNLNLPEVENNEETVKSILDEELRLVENALRRNFKSYGAWHHRKWVLSKGHSSTDKELLLLGKFQKADSRNFHAWNYRRFVTTLKNIPNEKELEYTTDMIYDNFSNYSAWHNRSVLLSHLLKEKAKGYSPKDNVFTEEYEFVRHALFTDPDDQSGWFYHLWLLDQTVKLETLLVSSWPPHGCNLSLSTDGSFGDCSLSPFTSLQTNTRTLPLILYFSEAVENICSSTVVIECENIASNELVWRSLSGDGAGSAQAWLTYLNFPEEHAHSEKAYQVKVSLAHSRGIFSSTGVHHGDSSHIEFSVSVPPHRSEHVDLNNEGKISWSDESFCTHDTQFLESALINLFHLERTKIDETVVDYQWNITTINNEISHYRELLSTMNCKIGKLTLARLLIAHDTLMSYTGTSHRNVSHHAEVLQLYDDLKKMDPAHLHYYQDEYSIVLLKQTISNQELLLKHCRKYRDPSSPRINNFCLRLNNLSLSRIGSMEQLLWVQVLDLSHNQLKTLEGLEVMQLLSCLNVSYNKLCSFTALEPLKLLRSLKVLDISYNEIGAHSIDTRRYLCSSPLNHRSGGDWKTEESEIHCVEVADNWEAYAIFKDLNLIQLDLKGNAVSDEKIQSLLIKLLPSLKWLDGESCR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="123050" PGL_stop="121349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122115" e_stop="121762"/>
            <exon e_start="121613" e_stop="121349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.852" acc_prob="0.991" e_score="0.989"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="122115" e_stop="121762" e_length="354"/>
          </exon>
          <intron i_serial="1" don_prob="0.852" acc_prob="0.991">
            <gDNA_intron_boundary i_start="121761" i_stop="121614" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="121613" e_stop="121349" e_length="265"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122115" stop="121762"/>
              <exon start="121613" stop="121349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122115" stop="121762"/>
              <exon start="121613" stop="121349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122114" stop="121762"/>
              <exon start="121613" stop="121349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122051" stop="121762"/>
              <exon start="121613" stop="121349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303610" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAG : GTAACCTCATGATCCTTTGGACAAAACCCTTGTGTACTCATAAGTTACCAATCGAGGATTTAAACTCTATGAGTTCAACTTTTAAGGTTTTTAACATTGAACATAGTATGTTATTACAGCGGAAGTACGCAATCTACATCCGCCACTGTCATTTACTATTATTTTCTTCGGTTTTATGTTTTAACCAATCGTTTTGTCTACTTTGGTTATCGTATTATCTATTGATTTGAGGATTTGTTGGACGCATCCTCTTTTCCTTTTCAAG</gDNA_template>
            <first_frame> R  Q  P  S  C  A  I  D  A  D  Q  G  R  H  T  N  M  E  A  E  I  S  *  N  M  F  V  L  Q  D  *  L  Y  Q  M  V  G  R  R  T  V  L  D  Y  R  E  Y  I  G  R  S  K  K  N  S  R  V  G  *  A  F  H  W  N  I  Q  I  E  R  V  V  D  G  V  L  S  P  E  C  Y  N  F  Y  S  Y  *  Y  M  P  N  V  W  C  S  C  T  V  S  G  A  *  I  S  L  D  I  T  W  F  T  S  F  A  *  T  F  D  E  :  V  T  S  *  S  F  G  Q  N  P  C  V  L  I  S  Y  Q  S  R  I  *  T  L  *  V  Q  L  L  R  F  L  T  L  N  I  V  C  Y  Y  S  G  S  T  Q  S  T  S  A  T  V  I  Y  Y  Y  F  L  R  F  Y  V  L  T  N  R  F  V  Y  F  G  Y  R  I  I  Y  *  F  E  D  L  L  D  A  S  S  F  P  F  Q  </first_frame>
            <second_frame>  D  N  L  H  V  L  *  M  Q  I  K  D  D  I  Q  T  W  R  Q  K  Y  L  K  T  C  S  F  C  R  I  S  Y  I  R  W  W  E  E  G  Q  F  *  I  I  E  N  T  *  A  A  Q  K  K  I  R  E  L  V  K  L  F  I  G  T  S  R  L  K  E  L  L  T  A  C  F  R  Q  S  V  I  T  F  I  V  T  S  T  C  Q  M  C  G  V  V  A  Q  S  Q  V  H  E  S  V  L  T  L  L  G  L  L  H  L  L  E  H  L  M  R :   *  P  H  D  P  L  D  K  T  L  V  Y  S  *  V  T  N  R  G  F  K  L  Y  E  F  N  F  *  G  F  *  H  *  T  *  Y  V  I  T  A  E  V  R  N  L  H  P  P  L  S  F  T  I  I  F  F  G  F  M  F  *  P  I  V  L  S  T  L  V  I  V  L  S  I  D  L  R  I  C  W  T  H  P  L  F  L  F  K </second_frame>
            <third_frame>   T  T  F  M  C  Y  R  C  R  S  R  T  T  Y  K  H  G  G  R  N  I  L  K  H  V  R  F  A  G  L  A  I  S  D  G  G  K  K  D  S  F  R  L  *  R  I  H  R  P  L  K  K  K  F  A  S  W  L  S  F  S  L  E  H  P  D  *  K  S  C  *  R  R  A  F  A  R  V  L  *  L  L  *  L  L  V  H  A  K  C  V  V  *  L  H  S  L  R  C  M  N  Q  S  *  H  Y  L  V  Y  F  I  C  L  N  I  *  *   : G  N  L  M  I  L  W  T  K  P  L  C  T  H  K  L  P  I  E  D  L  N  S  M  S  S  T  F  K  V  F  N  I  E  H  S  M  L  L  Q  R  K  Y  A  I  Y  I  R  H  C  H  L  L  L  F  S  S  V  L  C  F  N  Q  S  F  C  L  L  W  L  S  Y  Y  L  L  I  *  G  F  V  G  R  I  L  F  S  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121762" stop="121384"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNLMILWTKPLCTHKLPIEDLNSMSSTFKVFNIEHSMLLQRKYAIYIRHCHLLLFSSVLCFNQSFCLLWLSYYLLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121970" stop="121762"/>
                    <exon start="121613" stop="121610"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAQKKIRELVKLFIGTSRLKELLTACFRQSVITFIVTSTCQMCGVVAQSQVHESVLTLLGLLHLLEHLMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="123050" e_stop="121680"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="123050" e_stop="121680" e_length="1371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123050" stop="121680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCCACAATATGAATGCGAGAGGTATGACTCCGAAAGCAAAATTATATCATTTACATGTACTGTTGACGTAGGGGGAATGAAATATATTGGAGCAGCAGCTAGAACGAAGAAGGAAGCAGAGATCAAAGCTGCTCGAACTGCATTGTTGGCTGTTCAGTCTAGCGGTTTTGCGCCTAATTATTCTTCATACACTGTCGTTCCAATGAAGAAGGTCACAGATTTGGCAATCAGCAATCAGGAGAGTGCAGCAGCTCTGAAACCAAAGAAACACAGATTCAAGAAAAAGCAGACAAGGAATTTTTCAGATGTCAGTTATCATGTACGCACAAAGATTTTTGGTGACTCGGAAGTTCAGATGGTAAATCAAGCTAAACCAGAGATGCATGAAAATGCTGCTGTGATGACTCCAGGTACAGGATCTGGACCTGCACCTTTTGCAGGCACTATGGGTGATCTAGTTCCATCCAACAATTTGAGTTCTGATTATGGAACTTCAAATATTGGAATCAACTCTCAGTGTGGTGGAGGAGTAACGACTGAGGGAAATGCCGTTATTGGAGTTGATTATGGAACTTCAAAAATTGGAATCAACTCTCAGTGTGGTGGAGGAGTAACGACTGAGGGAAATGCCGTTATTGGAGTTGAGCAGGTAACTTTAGAGGTGGCACCAGTTGCTTGGAACGACAATCTTCATGTACAGGACCTGCACCTTTTGCATGAAAATGCTGCTGTGATGACTCAAGGTACAGGATCCGGACCTGCACCTTTTGCAGGCACTATGGGTGATCTAGTTCCATCCAACAATTGTGGTTCTGATTATGGAACTTCAAACCTTGGAATCAACTCTCAGTGTGGTGAAGGAGCTACAACCGAGGGAAATGCCGGTATTGGAGTTGAGCAGGTAACTTCAGAGGTGGCACCAGTTGCTTGTAACGACAACCTTCATGTGCTATAGATGCAGATCAAGGACGACATACAAACATGGAGGCAGAAATATCTTAAAACATGTTCGTTTTGCAGGATTAGCTATATCAGATGGTGGGAAGAAGGACAGTTTTAGATTATAGAGAATACATAGGCCGCTCAAAAAAAAATTCGCGAGTTGGTTAAGCTTTTCATTGGAACATCCAGATTGAAAGAGTTGTTGACGGCGTGCTTTCGCCAGAGTGTTATAACTTTTATAGTTACTAGTACATGCCAAATGTGTGGTGTAGTTGCACAGTCTCAGGTGCATGAATCAGTCTTGACATTACTTGGTTTACTTCATTTGCTTGAACATTTGATGAGGTAACCTGTTCTATGACAATATTTAAGTATTTATGCTGTTATTTACAATTGGAAGAAGTAACATATTAGCAGTTACCAGTCT</gDNA_template>
            <first_frame> I  P  Q  Y  E  C  E  R  Y  D  S  E  S  K  I  I  S  F  T  C  T  V  D  V  G  G  M  K  Y  I  G  A  A  A  R  T  K  K  E  A  E  I  K  A  A  R  T  A  L  L  A  V  Q  S  S  G  F  A  P  N  Y  S  S  Y  T  V  V  P  M  K  K  V  T  D  L  A  I  S  N  Q  E  S  A  A  A  L  K  P  K  K  H  R  F  K  K  K  Q  T  R  N  F  S  D  V  S  Y  H  V  R  T  K  I  F  G  D  S  E  V  Q  M  V  N  Q  A  K  P  E  M  H  E  N  A  A  V  M  T  P  G  T  G  S  G  P  A  P  F  A  G  T  M  G  D  L  V  P  S  N  N  L  S  S  D  Y  G  T  S  N  I  G  I  N  S  Q  C  G  G  G  V  T  T  E  G  N  A  V  I  G  V  D  Y  G  T  S  K  I  G  I  N  S  Q  C  G  G  G  V  T  T  E  G  N  A  V  I  G  V  E  Q  V  T  L  E  V  A  P  V  A  W  N  D  N  L  H  V  Q  D  L  H  L  L  H  E  N  A  A  V  M  T  Q  G  T  G  S  G  P  A  P  F  A  G  T  M  G  D  L  V  P  S  N  N  C  G  S  D  Y  G  T  S  N  L  G  I  N  S  Q  C  G  E  G  A  T  T  E  G  N  A  G  I  G  V  E  Q  V  T  S  E  V  A  P  V  A  C  N  D  N  L  H  V  L  *  M  Q  I  K  D  D  I  Q  T  W  R  Q  K  Y  L  K  T  C  S  F  C  R  I  S  Y  I  R  W  W  E  E  G  Q  F  *  I  I  E  N  T  *  A  A  Q  K  K  I  R  E  L  V  K  L  F  I  G  T  S  R  L  K  E  L  L  T  A  C  F  R  Q  S  V  I  T  F  I  V  T  S  T  C  Q  M  C  G  V  V  A  Q  S  Q  V  H  E  S  V  L  T  L  L  G  L  L  H  L  L  E  H  L  M  R  *  P  V  L  *  Q  Y  L  S  I  Y  A  V  I  Y  N  W  K  K  *  H  I  S  S  Y  Q  S </first_frame>
            <second_frame>  S  H  N  M  N  A  R  G  M  T  P  K  A  K  L  Y  H  L  H  V  L  L  T  *  G  E  *  N  I  L  E  Q  Q  L  E  R  R  R  K  Q  R  S  K  L  L  E  L  H  C  W  L  F  S  L  A  V  L  R  L  I  I  L  H  T  L  S  F  Q  *  R  R  S  Q  I  W  Q  S  A  I  R  R  V  Q  Q  L  *  N  Q  R  N  T  D  S  R  K  S  R  Q  G  I  F  Q  M  S  V  I  M  Y  A  Q  R  F  L  V  T  R  K  F  R  W  *  I  K  L  N  Q  R  C  M  K  M  L  L  *  *  L  Q  V  Q  D  L  D  L  H  L  L  Q  A  L  W  V  I  *  F  H  P  T  I  *  V  L  I  M  E  L  Q  I  L  E  S  T  L  S  V  V  E  E  *  R  L  R  E  M  P  L  L  E  L  I  M  E  L  Q  K  L  E  S  T  L  S  V  V  E  E  *  R  L  R  E  M  P  L  L  E  L  S  R  *  L  *  R  W  H  Q  L  L  G  T  T  I  F  M  Y  R  T  C  T  F  C  M  K  M  L  L  *  *  L  K  V  Q  D  P  D  L  H  L  L  Q  A  L  W  V  I  *  F  H  P  T  I  V  V  L  I  M  E  L  Q  T  L  E  S  T  L  S  V  V  K  E  L  Q  P  R  E  M  P  V  L  E  L  S  R  *  L  Q  R  W  H  Q  L  L  V  T  T  T  F  M  C  Y  R  C  R  S  R  T  T  Y  K  H  G  G  R  N  I  L  K  H  V  R  F  A  G  L  A  I  S  D  G  G  K  K  D  S  F  R  L  *  R  I  H  R  P  L  K  K  K  F  A  S  W  L  S  F  S  L  E  H  P  D  *  K  S  C  *  R  R  A  F  A  R  V  L  *  L  L  *  L  L  V  H  A  K  C  V  V  *  L  H  S  L  R  C  M  N  Q  S  *  H  Y  L  V  Y  F  I  C  L  N  I  *  *  G  N  L  F  Y  D  N  I  *  V  F  M  L  L  F  T  I  G  R  S  N  I  L  A  V  T  S   </second_frame>
            <third_frame>   P  T  I  *  M  R  E  V  *  L  R  K  Q  N  Y  I  I  Y  M  Y  C  *  R  R  G  N  E  I  Y  W  S  S  S  *  N  E  E  G  S  R  D  Q  S  C  S  N  C  I  V  G  C  S  V  *  R  F  C  A  *  L  F  F  I  H  C  R  S  N  E  E  G  H  R  F  G  N  Q  Q  S  G  E  C  S  S  S  E  T  K  E  T  Q  I  Q  E  K  A  D  K  E  F  F  R  C  Q  L  S  C  T  H  K  D  F  W  *  L  G  S  S  D  G  K  S  S  *  T  R  D  A  *  K  C  C  C  D  D  S  R  Y  R  I  W  T  C  T  F  C  R  H  Y  G  *  S  S  S  I  Q  Q  F  E  F  *  L  W  N  F  K  Y  W  N  Q  L  S  V  W  W  R  S  N  D  *  G  K  C  R  Y  W  S  *  L  W  N  F  K  N  W  N  Q  L  S  V  W  W  R  S  N  D  *  G  K  C  R  Y  W  S  *  A  G  N  F  R  G  G  T  S  C  L  E  R  Q  S  S  C  T  G  P  A  P  F  A  *  K  C  C  C  D  D  S  R  Y  R  I  R  T  C  T  F  C  R  H  Y  G  *  S  S  S  I  Q  Q  L  W  F  *  L  W  N  F  K  P  W  N  Q  L  S  V  W  *  R  S  Y  N  R  G  K  C  R  Y  W  S  *  A  G  N  F  R  G  G  T  S  C  L  *  R  Q  P  S  C  A  I  D  A  D  Q  G  R  H  T  N  M  E  A  E  I  S  *  N  M  F  V  L  Q  D  *  L  Y  Q  M  V  G  R  R  T  V  L  D  Y  R  E  Y  I  G  R  S  K  K  N  S  R  V  G  *  A  F  H  W  N  I  Q  I  E  R  V  V  D  G  V  L  S  P  E  C  Y  N  F  Y  S  Y  *  Y  M  P  N  V  W  C  S  C  T  V  S  G  A  *  I  S  L  D  I  T  W  F  T  S  F  A  *  T  F  D  E  V  T  C  S  M  T  I  F  K  Y  L  C  C  Y  L  Q  L  E  E  V  T  Y  *  Q  L  P  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123050" stop="122094"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>954</number_coding_nucleotides>
                  <number_encoded_amino_acids>318</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPQYECERYDSESKIISFTCTVDVGGMKYIGAAARTKKEAEIKAARTALLAVQSSGFAPNYSSYTVVPMKKVTDLAISNQESAAALKPKKHRFKKKQTRNFSDVSYHVRTKIFGDSEVQMVNQAKPEMHENAAVMTPGTGSGPAPFAGTMGDLVPSNNLSSDYGTSNIGINSQCGGGVTTEGNAVIGVDYGTSKIGINSQCGGGVTTEGNAVIGVEQVTLEVAPVAWNDNLHVQDLHLLHENAAVMTQGTGSGPAPFAGTMGDLVPSNNCGSDYGTSNLGINSQCGEGATTEGNAGIGVEQVTSEVAPVACNDNLHVL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121970" stop="121758"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAQKKIRELVKLFIGTSRLKELLTACFRQSVITFIVTSTCQMCGVVAQSQVHESVLTLLGLLHLLEHLMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="127047" PGL_stop="127768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127047" e_stop="127768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="127047" e_stop="127768" e_length="722"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127047" stop="127768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACTTGAAATATTTTCTCCTCATCTTCCACTTTAACCTTCAAATTTCCAGCAACATTCAAGCACACCCTCCAACCCTAAAACCCCCAAATATACTTTGGTTAAAAATTGAACTTTTTTTCATCTGGGTATTCATATAGATGTGCATATTCACACACCCACTTGCCTTATTTGGTTAAAAATTGAATTTTTTTTTCATCTGGGATTCATATTCATGTGCATAATACACACCCACAATCCCTATTTGGCTAAAAGTTTGATTTTTTTTCTTTTGGGATTTTTTGTTTTTTTGGTTAAAGAATAGTCATAGTGAATCTTTTTATCTGTGTATACATATAGAATGATCATATTTACACACCCACTAGCCCTATTTGGCTAAAGGTTGGAGCTTTTGGGATTATCATTTTGTAGTTTTGGTTAAAGGAATAGTTCAGGTTGATTTAATTTTTTTTTATCTGTGTATACATATACATGTTCATATTCACATATCCACTAGCGCTGTTTGGCTAAAAATTGGATCTTTTTTGGGAACTTTTGTGTTTTTGGTTAGGTATAGTTCATATTGAATCTTTTTATCTGTGTATACATATAGATCTGCATTGCCATATTCACACACCCACTAGTCCCTATTTGGCTAAAAGTTTAAGTTTTTGGGAATTTTTGTTTAGTGATAGGTTGGATTGGATTCTTGTTAAGAACTCAGATGTAAAGAATGGAGGAATC</gDNA_template>
            <first_frame> E  L  E  I  F  S  P  H  L  P  L  *  P  S  N  F  Q  Q  H  S  S  T  P  S  N  P  K  T  P  K  Y  T  L  V  K  N  *  T  F  F  H  L  G  I  H  I  D  V  H  I  H  T  P  T  C  L  I  W  L  K  I  E  F  F  F  H  L  G  F  I  F  M  C  I  I  H  T  H  N  P  Y  L  A  K  S  L  I  F  F  L  L  G  F  F  V  F  L  V  K  E  *  S  *  *  I  F  L  S  V  Y  T  Y  R  M  I  I  F  T  H  P  L  A  L  F  G  *  R  L  E  L  L  G  L  S  F  C  S  F  G  *  R  N  S  S  G  *  F  N  F  F  L  S  V  Y  T  Y  T  C  S  Y  S  H  I  H  *  R  C  L  A  K  N  W  I  F  F  G  N  F  C  V  F  G  *  V  *  F  I  L  N  L  F  I  C  V  Y  I  *  I  C  I  A  I  F  T  H  P  L  V  P  I  W  L  K  V  *  V  F  G  N  F  C  L  V  I  G  W  I  G  F  L  L  R  T  Q  M  *  R  M  E  E   </first_frame>
            <second_frame>  N  L  K  Y  F  L  L  I  F  H  F  N  L  Q  I  S  S  N  I  Q  A  H  P  P  T  L  K  P  P  N  I  L  W  L  K  I  E  L  F  F  I  W  V  F  I  *  M  C  I  F  T  H  P  L  A  L  F  G  *  K  L  N  F  F  F  I  W  D  S  Y  S  C  A  *  Y  T  P  T  I  P  I  W  L  K  V  *  F  F  F  F  W  D  F  L  F  F  W  L  K  N  S  H  S  E  S  F  Y  L  C  I  H  I  E  *  S  Y  L  H  T  H  *  P  Y  L  A  K  G  W  S  F  W  D  Y  H  F  V  V  L  V  K  G  I  V  Q  V  D  L  I  F  F  Y  L  C  I  H  I  H  V  H  I  H  I  S  T  S  A  V  W  L  K  I  G  S  F  L  G  T  F  V  F  L  V  R  Y  S  S  Y  *  I  F  L  S  V  Y  T  Y  R  S  A  L  P  Y  S  H  T  H  *  S  L  F  G  *  K  F  K  F  L  G  I  F  V  *  *  *  V  G  L  D  S  C  *  E  L  R  C  K  E  W  R  N  </second_frame>
            <third_frame>   T  *  N  I  F  S  S  S  S  T  L  T  F  K  F  P  A  T  F  K  H  T  L  Q  P  *  N  P  Q  I  Y  F  G  *  K  L  N  F  F  S  S  G  Y  S  Y  R  C  A  Y  S  H  T  H  L  P  Y  L  V  K  N  *  I  F  F  S  S  G  I  H  I  H  V  H  N  T  H  P  Q  S  L  F  G  *  K  F  D  F  F  S  F  G  I  F  C  F  F  G  *  R  I  V  I  V  N  L  F  I  C  V  Y  I  *  N  D  H  I  Y  T  P  T  S  P  I  W  L  K  V  G  A  F  G  I  I  I  L  *  F  W  L  K  E  *  F  R  L  I  *  F  F  F  I  C  V  Y  I  Y  M  F  I  F  T  Y  P  L  A  L  F  G  *  K  L  D  L  F  W  E  L  L  C  F  W  L  G  I  V  H  I  E  S  F  Y  L  C  I  H  I  D  L  H  C  H  I  H  T  P  T  S  P  Y  L  A  K  S  L  S  F  W  E  F  L  F  S  D  R  L  D  W  I  L  V  K  N  S  D  V  K  N  G  G  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127556" stop="127768"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLDLFWELLCFWLGIVHIESFYLCIHIDLHCHIHTPTSPYLAKSLSFWEFLFSDRLDWILVKNSDVKNGGI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0129D14.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127411" stop="127611"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLAKGWSFWDYHFVVLVKGIVQVDLIFFYLCIHIHVHIHISTSAVWLKIGSFLGTFVFLVRYSSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 130 chains have been computed
$ 
$ memory statistics:
$ 323696 bytes spliced alignments in total
$ 62 spliced alignments have been stored
$ 5220 bytes was the average size of a spliced alignment
$ 26016 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1530 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 176 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:48:33
-->
