<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:57:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338416" ref_strand="+" ref_description="SGN-U338416        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47900688|gb|AAT39287.1| putative polyprotein [Solanum demissum] (evalue: 3e-23, score=112)">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="8859" stop="7910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8559" g_stop="8209" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-U338416" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338416" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8559" e_stop="8209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGATAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGTCTTAACAAGAGAAAAGGTCTGGAGCAAATCGAGAGGGATGGGATAGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGAGGACTAGAGATCCTATAACCAGGCTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTATTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343095" ref_strand="-" ref_description="SGN-U343095        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger protein-related, contains Pfam profiles PF03108: MuDR family transposase, PF04434: SWIM zinc finger | chr1:23851419-23853578 FORWARD | Aliases: F22C12.28, F22C12_28(evalue: 5e-07, score=52) genbank/nr: putative(evalue: 3e-41, score=171)">
      <seq>cttgagcggaaagtatgttcttgtggtagatttcaactagatgagataccttgttcacatgcaatcgctgtattgaaaaaaaagaatgtcaccgatatgaatccgtattgctctgattattacaagcctgatgcattggcaaaaacatatgaaatttcaatggtaccaatgccagataaggaagattggtcagatcctaataatgtggtagctgaaactgtgtatccacctagatacagaagatcatctggacgaccaagaaaaagaagaagaaagaatgcagatgaaaagatttcggtgaacacaaactgttgtggacaatgtggacaagaaggaaacaacggaagaacttgtactttctacccaaaagagaagtgaattagtcgtaatgtttttatgatatcaagaataatttataacgtaaatattttaatgaatttcagttttcattacagttgaaaattgaacactttttgtttagataaataaacttaataacatgtgataattaaattgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="26071" stop="27189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26371" g_stop="26889" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="529"/>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-U343095" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343095" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26371" e_stop="26889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTTAACTAGATGAGATACCTTGTTCACATGCAATTTTTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTACCAATGCCAGATAAGGAAGACTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCTTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTAAACACTTTGTGTTTACATAAATAAACTTACAAACATGTGGTAATTAAATTTGAA</genome_strand>
        <mrna_strand>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTCAACTAGATGAGATACCTTGTTCACATGCAATCGCTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCATTGGCAAAAACATATGAAATTTCAATGGTACCAATGCCAGATAAGGAAGATTGGTCAGATCCTAATAATGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAGATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGAAACAACGGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCGTAATGTTTTTATGATATCAAGAATAATTTATAACGTAAATATTTTAATGAATTTCAGTTTTCATTACAGTTGAAAATTGAACACTTTTTGTTTAGATAAATAAACTTAATAACATGTGATAATTAAA-TTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342680" ref_strand="+" ref_description="SGN-U342680        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-19, score=97.4)">
      <seq>tcgtgccgattttgataaaagcaaatcactcccagctgatgcaatctattagcaaagagaacatcaattttcaggctgatacaagcacatttcagtctgacaaacaaacatctcagcaaataccggttgatctcgatgatatgggtggtgtagctgaggatggtggtggtttttctggtaaaaatggtgagcatcatatcgtcgacgatgcaggggatgtcgatgtggatggtgttggtgttgccgtaaatgagggtgaaccaatagtcactgatccaaaggatggtgacgcacatcagtcgcaccaagatttaaatgaacatatcatggaccaagccgttgacgacaatgttcatcacaacatccctcatatgttgcccgaaaaaacaacaacagattcatcggattcttcaacttcaacaacaatatcgccatcaactcaagcagcaatagaagcacttatcaaagatttgggtaaagatgctaccaatgctagaccattatattcttacgatccaaagaatataactagcagccagtacttgttgaccgacagtcaattacccactgaaattccaataacggagattgctgttaaaactgatgcagtcactcctgcgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="30551" stop="29047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30259" g_stop="29976" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29975" i_stop="29773" i_length="203">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29772" g_stop="29650" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="404" r_length="123" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29649" i_stop="29566" i_length="84">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29565" g_stop="29347" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="623" r_length="219" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-U342680" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30259" e_stop="29976"/>
          <exon e_start="29772" e_stop="29650"/>
          <exon e_start="29565" e_stop="29347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATAGGCAAGGAAAACATCAATTTTCAGGCTAATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCAATTGATCTCGATGATATGGGCGGTGTAAATGAGGATGGTGGTGGTTTTTCTAGTAAAAATGGTGAACATCATATCGTTGACGATGCAGAGGATGTCGATGTGGATGGTGTTGGTGTTTCCGTAAATGAGGGTGAACAACTAGTCAGTGATAATCCAAAGGTAATGTTTATGATACATTGGGTATGTTGTGTATCATGCACATATAGTCAATGTTATGTATCATGGTCACTTTCTTTTTTCATTTTATATTCTGTCATGTATCATGCATATTTACTCAATACTATGTATCATGTGATTATAATCAATGTTACGTATCATCACAAATTATATTAACAATTTTTATTTCAAAACTGTATATTCAGGATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGACGTTGATGACAATGTTCAGCACAACATCCCTCATGTTTTGCCTGAAAAAACAACAACGGATGCATAGGTACATTTTTTCAGTTTTGATTTATGACACACAATTTCATTACACACAAATTTATTTTAAAAATCATTACATCATATTATACAGGAATGTTCCACTTCAACAACAATATCACCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGCTAAAGATCCTACTAATGCTAGACCATTATATTCTTACGATCCGCAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGATATTCCAATAACGGAGATTGTTGTTAATACTGATGCAGTCACTCCTGCGCAT</genome_strand>
        <mrna_strand>TCGTGCCGATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATTAGCAAAGAGAACATCAATTTTCAGGCTGATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCGGTTGATCTCGATGATATGGGTGGTGTAGCTGAGGATGGTGGTGGTTTTTCTGGTAAAAATGGTGAGCATCATATCGTCGACGATGCAGGGGATGTCGATGTGGATGGTGTTGGTGTTGCCGTAAATGAGGGTGAACCAATAGTCACTG---ATCCAAAG...........................................................................................................................................................................................................GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGCCGTTGACGACAATGTTCATCACAACATCCCTCATATGTTGCCCGAAAAAACAACAACAGATTCATCG....................................................................................GATTCTTCAACTTCAACAACAATATCGCCATCAACTCAAGCAGCAATAGAAGCACTTATCAAAGATTTGGGTAAAGATGCTACCAATGCTAGACCATTATATTCTTACGATCCAAAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGAAATTCCAATAACGGAGATTGCTGTTAAAACTGATGCAGTCACTCCTGCGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319209" ref_strand="+" ref_description="SGN-U319209        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphatidylglycerolphosphate synthase (PGS1), identical to phosphatidylglycerolphosphate synthase GI:13365519 from (Arabidopsis thaliana) | chr2:16414333-16416201 FORWARD | Aliases: T16B24.7, T16B24_7(evalue: 2e-79, score=292) genbank/nr: gi|15225064|ref|NP_181461.1| phosphatidylglycerolphosphate synthase (PGS1) [Arabidopsis thaliana] gi|7484841|pir||T02573 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase homolog At2g39290 - Arabidopsis thaliana gi|3402692|gb|AAC28995.1| putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Arabidopsis thaliana] gi|13365519|dbj|BAB39133.1| phosphatidylglycerolphosphate synthase [Arabidopsis thaliana] gi|15778125|dbj|BAB68508.1| phophoglycerolphosphate synthase [Arabidopsis thaliana](evalue: 2e-77, score=292)">
      <seq>ttgcgtaagtaattatacaaacaatgcccggaactctcaaactcaacaacgctcttgcctctatttattactacaattctcacaagccctataattggttgcgctcttttacctcccttaccggcaccggcatttctaactcctccatcaccgtcgctgccgctcacaagcgctactctttgtatattccgcccgacggtgattccccttcccgtcggaaattcctagggcgtttaggtcacggatatgctctaagaagtatttctactactcagatgggacccacccctgatcacaaggaggaggatctccgccgtgaaaaatcatctctccctataccctccaagtctgaaaagttgcttacattgcccacgattttaacaattggccgtgtggctgctgttccgcttttggtaaccacattctatgttgatagctggtgggggccaaatgctacaacggctatatttattgcagcagctgtaactgactggcttgatggataccttgctcgcaagatgaacttaggaactgcctttggtgcgtttttagatccagtggctgacaagttaatggttgctgctaccttggtcttgttgtgcaccaaacctttggagtccggtgtgttcggacagttgccatggctattaactgtcccttcgattgcgataataggcagggagataaccatgtctgcagttcgagaatgggcggcttctcagggtggtaaactttcagaggctgtagctgtgaataacctcgggaaatggaaaactgccacccagatgattgcattgaccatcctcctgctaaccagagatagcagtttatctggagctgcctctcttgtgggttccggtgtgatgttgctatatatatcagcgtggcttgctgtgtggtctctgttcgtttatatgagaaagatatggaaagtgttattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="33038" stop="46895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33338" g_stop="33757" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33758" i_stop="39463" i_length="5706">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.488" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39464" g_stop="39561" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="518" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39562" i_stop="39663" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39664" g_stop="39714" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="569" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39715" i_stop="39876" i_length="162">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39877" g_stop="39990" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="683" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39991" i_stop="46158" i_length="6168">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46159" g_stop="46215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="740" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46216" i_stop="46296" i_length="81">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46297" g_stop="46382" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="826" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="46383" i_stop="46478" i_length="96">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.575" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46479" g_stop="46595" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="943" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-U319209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>943</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33338" e_stop="33757"/>
          <exon e_start="39464" e_stop="39561"/>
          <exon e_start="39664" e_stop="39714"/>
          <exon e_start="39877" e_stop="39990"/>
          <exon e_start="46159" e_stop="46215"/>
          <exon e_start="46297" e_stop="46382"/>
          <exon e_start="46479" e_stop="46595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCGTAAGTAATTATACAAACAATGCCCGGAACTCTCAAACTCAACAACGCTCTTGCCTCTATTTATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCAGTAAGTTTCTCAGCTATATTGTTGATCTGATAACTGTTGGACTACATCGGAACATTGAGGTTGATGCTTTTGTTAGTCATGCTTTACCTAAGCTAACTGACTAATGTATGCACCTCTACATTTCATTTTGTGAAATTGATTTTCTGCATTGTCCTAATCCCTTGAAAATCACGAATTGTATTCTTGTCAGGGAAATAGTAATTTGGAATGAGTATTCAAAGTTGACACTGGCAAGCTTACCCCTGTTCGAATTTTGGTTTAAGTTCAGTAGTAAATAGCAAACTGTCAGCTTTCCACAAATTGATGATATCTATGCACTAGGTAATTCGGGTATCCCCTTCGGAGGACTTAATAACTGTCTGATTGGTTACTTAAGCTAATATAGTGAAATATCAATTGTTTAGTGCTGCCTCTCAGAAGAGGCTAATTGACAAGGAAAAGTATGCCTGAGAACCTTAATGACGTCATTGAAGTGCACACTAAGCAATGCAAAACACTCTACAAATTTTGAAGCCTTGCTTCAGGGCCTAAGCACACCTTTGACAATATAGTGTGCTCCCAACTCTTGCAACATTCAACTTTCACTCCTCCTCACTAGTGCATAGTTGCACCTTCTCTTATCATGCTTGAACCATCTTAGCTGGCATCCCTCATCTTGTCCGCGGTCCGCCACAGGCCACTCCCATCTTTCCAGTATAACTTTGTTCCTAATACTATCCCTCTTAGTATGCCCACACATTCATGTGAACATCCTCATCTCTACCTCCATATTTTGAAAATGGGCATTCTTTACTAGCCAAAACTCAGCCCAATACTACAATAATCATACTTATAAAGATATAAGTTAAATAAAAACAAGAAAACATATTCATACCTTGATTGCTTATAGTCTGACCTTGATTTTCCTCTCTTCTTCCTCTTCCTCCCCCTTCCTGTCTCTTTCTGGTTCCACATTAGAGAGCTTCCTCTTATGCTTTATGTTCTAGAAAGCTTTAGCCTGAATAACTCTGATCCCCTTCAAAATGGTTTCTTATTTGGTGGTGTCCGGCCCACAGTATCATTATCTTCTTTTATTTTGGGCTAGTGATTATTGTGATTCCTCTTATTTTGGGTTGTTACAGCTTGTTTCACAGAATTGTTCAAGAGTCGGTGATATTCCAGTTAAAAACACTGCTAACTTGATTATCACTAACTCTTTCCAAAAGCTCCTTAGTCCTTATATTACGCATGAGGCCTGATTGACTTGGCATAACATGCACAAGAAGATGGTTTTTTTCTCTTCAACAGATTCCTCCAGTGTGAAAGGGAGGCTGAGGATGCTGGTCACCTATTTCTACACTGCAAGTATGTTTCACCACTTTTGTTTTTGCTGAAATGACCCATGCAAAAGGACTCAACTGAATTACTACAATGCTGGAGCTGAAAAGAATTGGACAAAGGATCCCTAACCAATATGGAATTCCAACCTTGTATGGATCTGGTGGGTAGCACGTAGGGAAAGGAAACTAAGACTTGTAGATGACATAATTAATAATATCAACAGCCTAATACACAGGGGTGCTCTTTGTTAGCCTTTTGGTGTAAAATGATTGATGTAAATGAGGTTGATATCCCTATAGGCCAACTTAATTCGTCAAATCATTAACTAACAAATTGAGTTTTGTACTGCAAAACTAGCATTGCAGCACCTCTTTTGTGCTTCTGTGAATCAATATAATCTTGCTTTTCAAGATAGTTAATGTTAAGAAAAGTTAAACAAGGTCTACACAATGTTAAGGTCAAGTTACAATGCCACGAGACCCTTTTTCACGTCTCTTCTATAAACAACTTCAGTCTCGTACACTGAAATGTAATGGCTATTGAAGTATTATGGCCGTACTTTGTTCCCTATTTATAGCTTCGCTTCTTAGTTGTTACACAACTTTTCTAGTGAGCAATAGAGTTTAGCATTAATAAAATTAAATGTCTATTGACTTTGAAGCATATAAGTAACCTAGTTAGAAGATTTCTTGTGTAACCTGATCTTTATTGGCCATATATGGGTTTGTGGGAACTTCTATGCCTTTATTTTTTTTTCTACTTTCATAGTTCTTTTTAATTCGAGTGTTACTATCCTCAAAAAATAATTCTTTTTTAATTTTGTATAGCTTTATAAGTTCTTTTTGGGAAAATTTTACTACTTATGGTCTAGGTAGGTCACAAGTCAATTAATCATTCAAGCTCGATACCAAACTAGTTAGGCTAGCCATAAAAAGTCTTTGATCTAGAAATTTCCCAAACTGTCCGGCCATTTCAATGGAAGAGAAAGTAAGTTTACGGTGTAACTTTGAAGAAGATGAAGTGTTGAGATGTCTCAAGCTACGTGCAATAGATAAAGCCCAAGGACCTGATGGTTTCACCATGGACTTTTACATTAAGTGTTGGGAGGTTGTTAAGCAGTAAATAATGAAGGCATTCCAATAATTCCACGAGCAAAAAGTGTTGGAAAGAAGATTCAATGCTACTTTTATTGCTCTCATTCCCAAGAAGAAGGTGCCATGGAGTTGAGGGATTATAGACCCACAAGTCTGATAGGCAGCATCTATAAAATCTTCTCCAAAGTCTTAACAATGACGGAAGGGGTGATGGAAAATCTAGTAGATTCTCAACAAATGACATTTATTAAAGGTAGACAGATCATGGATGCAGTCCTAGTGGCAAATGAAGCCGTAGGCTCAAGAACGAAGCATAAGAAGGAAGCAATATTGTACAAGCTTGACATTGAAAAAGCTTATGACCATGTTAATTGGGGATACTTGATGGATGTCCTTGAGAAGATGGGATTGGGGCTTAAGTGGACCAACTGGATAAAATTTTGTATATCTTCAGTAAAATTCTCTGTTTTGATTAATGGTGCTCCAACAGGATTCTTCGGAGTTCAAAGGGGCCTCAGGCAGGGGATCCTCCGTCCCTTTCCTGTTTTTGCTAGTTATGGAGGGAATCAACAACATGCTCAAAATAGCTAACACAAAATGGCTGGTTGAGAGGTTTTGATGTGGCTAGAGATGAAAGGGAAAGTTTAGAAGTGACTCATTTGCAATATGCAGATGACACACTCATCTTTTGTGGGGCAGAAGAAGAACAACTCAGATATCTTAGAGTAATATTGGTCATGTTTGAAGGAATCTCTGGGTTACATATTAATTTGAGCAAGAGTTTCCTTTATTCCATTAATGAAGTAAATAACATGGAGACACTGAACACTATCCTAGGTAGACAAGTTGGGGCTCTCCCAACTACATACTTTGGGATGCCTTTGGGTGCTAAATCAATGTCAAAAGAGATCTGGAACAATGTAATAGAGAAATGTGAGAAGAAACTGGCTAGATGGAAGGGGCAATACTTGTCTCTTGGAGGAAGAGTAACTTTTATCAACTCAGTTTTAGATGCTATGCCCACGTACATGATGTCTTTATTTCCCATTCCAGCAGGGTTACTGACAGATTGACAGGATCAGAAGGAAGTTCTTATGGAAGGGAAACAAGGATTGGAAAGGTTACAATCTGGTAAAGTGGACAGATCTGATAATACCAAAAAAGTATGGGGGTCTGGGATTAAAAAATTTGCAGAATCATAGTCAGGCTCTTAGAATGAAGTGGTTATGGAAGTATGCTAATGACAAACAACTGTTATGGGGAAAGGGACATTAAAAAGCCAAGTATGACAGAGAAAATAGATGGATGACAAAGGAAATAATCTCCCCATATGGAGTGAATCTGTGGAGATCTATAAGGGCCTTGTGGGATGACTTCAAGATCAATACCAAGGTTAAAGTCAAGAATGAGGAATAGACAGCTTTTGGGAAGATGACTGGCATGAAATAGGAGTTCTAAGGAATATCTATCCAGACATACACAATTTAATGCTAAACCAGCAAAGAACAATTGCTGAATTGTGGAAGCCTGATGGGTGGGAATCAATTTCAGAAGGCAATAAATGACTAGAAATCACAAGAGTTGCAGAATTCTTAAACACTATTGGACAATTTAAAGGAACACAAGTTGGTGGAAGGGCAGGGACAAAGGAATATTCAAGGTTGGCAATGCATAGAGATGGTTGAATAACCACAATCTACAGAATGTCAACTGGCCTTGGAAAACTATATGGAAGGTGAACATACCCTACAAGGTAGCATGTTTTACTTGGCTCCTATCTAAGGAAGTTGTCCTTATACAAGATAATCTGGTGAAAAAGGGATAACTTTATGTCCTAGATGTGTTTTTTGTGGAGAACAAGCAGAGATTGTTAGACATTTGTTCCTCCACTGCAAGTTCACAATCCAGCTTTGGAGGCTATTCTTGAACCTTAAAGGTTTCTCTTGGTCTATTCCGGGAAAGGTTATAGAGGCCTTGCAAAGCTGGGAAGAAGCTGGGTTCAAGCAAGAAGCAGAAGTAGGTGGAGAATCATACTAGCCGACATATGGTGGACAATTTGGAAGGAGAAGAATGCTAGGTGTTTTGAGAGCATAGAGAATAGTATAGAGCAAATCAAATTGAATTGTATCTTTATTCTATGTTTTTGGTGTAATGAGATCTGCTCTAATGATCCTGTATCTATTATTGATGTGTTAGACTCATTATAGACACAGGATCATAGGTTCTGGAATTGCTTGTATATGTACTGATCAGTTCGTATCAATATACACAAAGTTACCAATTTCGTTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAAGACTTTTTATATGCTGGCCATAAATCTATCACAAGCCTCCACTTTATCTGTGTTTGGGACTGGTTATGCATGAAGCTAATATATGTGTGAGTTCCATAGGTTACAAGTGACAGTGTCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTCTTTTTGTTTCCTTTGTCTTGCAAGTGTTGATGAAATAGAATATCTTTTTTCCTTTTTCTGATGAAGGTCAATACAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTGATAAATGAGTGTATACGTTGTTTGGTGTAATGAGATTTGGTCTAATGATCCTGTGTCTATTATTGATGTGTTAGACTCATTGTAGACATAGGATCAGAGGTTCTGGAATTACTTTTATATGTACTGATCAGTTTGTATCAATATACACAAAGTTACCAATTTAAAAAAAAAGTCTTTGATCAATTTCATTATGCTTAGTCACTTCAGTATTTAAAGATCTGTCATAGTTAATACTTTTTATATGCTGACCATAAATCTGTCACAAACCTCCACTTTATCTGTGTTTGGGACTGGTTATGCGTGAGGCTAATATAGGTGTGAGTTCCACAGGTTACAAGTGACAGCGCAATATAGTGTCTGGTGGCTTTATGCATCAGTGGCTCATTGGAATGTTTTCTGATGTACAATCCCTTGTACATGTTTTTTTGTTTCCATTGCCTTGCAAGTGTTGGTGAAATAGAATATCTGTTTTCCTTTTTCTGATGAAGGTCAATAAAAATATAAGATCTGTTTTAATTTGTGTTTAGCATTCTTTGATTTATGGCAGAACCTTGGCCTAATAAATGAGTGTATATGTTGTTTGGCAATGGTAATCTGCATAAATAAAGCTGACCTTGTACTCTGTTTAATCTAGCATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAGGTTCTCATTTCTGCTGTTTTGAGTTCCATATTATCATCTCTTCTGGAATTCTTATTTTCCGTATTTGAAATATCACAATTTTAGATGGTTTGACATGCCCAGATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGATCCAGTGGCTGACAAGGTATTCTCTATCGTTCTGTTTTCATTGGATCGTGCTTATTGCCTGCAATTTTGGATGGTGTAATTATCAAAATTTCCAGTAATAAGCATGAGATTTGGGGGGAAATATCCTTGTAAATATGATGTTTTATAATTGATATACCTGTCTTCTCAACTGCAACAGTTAATGGTTGCTGCTACCTTGGTCTTGTTGTGCACCAAACCTTTGGAGTCCGGTGTGTTCGGACAGTTGCCATGGCTATTAACTGTCCCTTCGATTGCGATAATAGGCAGGGAGGTGAGTGAGTGATAATCTGTATAAATTCATGTAACTGTATTTCGTTTAGCCTACTTTAGTTGTATTTGGTTATTTCTTGATACTTTATAGTCTCTAGATTAGAAATGGATGACCTCAAATTGACATAAGTTTCTTTCCACTACGGACTTGCATCTTTCATTTGTAGTGTTTTAATAACAATTTGGGAAAAAAAGTTCTTCAAGATTCATTGTTTTTTTTTTCAAAAAATGTTTTAAGTAAAAGTCACTCTGTTTCTTTCTGTTGAAGTTAAAATATACAGGCCTTTTTGATACTATTAGCTAGGGGTGGGCATAATAACAGGAAAATCGGATCGAACCGAATTAATTGGGTTCGGTTTTGGTACTAAATTTTTGAAACTTTGTATTGGGTTTGGTTCTCGGTATTAGTGCTCCTGTATTCTGGTTGACCAAAAAACCAAAATTTGCAAATGCTGTTTGGCTGTTTGCTTCATCTGCACGTTATAGCTAGCTGTTTGCTTTTCCCTTCTGCTGTAACAAAATTACAGTTATATGTAATCAGTGCTAAGTACTAACTTTTTTGAAGCTGCAGTGCTAAGTACTAACTGCCAAACTGCTTTAAGTGTTCATTGTATGAGACCCCTAAAGTGAACTCGGAAGTACTGGGAGACGAATAAAGTGAGGAGTATACATTCACCAGTTACAAAGTGAGAGAAGTGTGCACAAGCAGTTCATCGTTTGAAACTAGGATTACCTTAGATATGCACCAGTACTTTGAGTTGTTCGATAACATTCAATTATCAACTATAGGTATTCATGCCCTAAGTACTAAGGGGAAGTTTGGTGTGATGGATAAGGAAAAATGATCCTGGGATAAGTTTTTAGTTCCACTCAATTCTTTGTTTGGTTACGAAGTGTGGCATAACTTATCCAAGGATTAATAATTGTGAATTGAGATCTAAGTTGCTTGGACTCCGTGTAAGTGTTCGATACAGGTGCGGATCTAAAGGTCGGGTCATGATCTAATTTTTAAGATTCGGAGATATGAATCCATGTATGGATTTGGGTGTGGGGATTCACCTAAAAATAATTAGCATATCTAAAAATAGAGCTATAATACCTAAATTATGAGATATTATGAGGATAACTTGAGGAGAATTCTGGAAGGAGATCAAAGGAAAATGAGTGACATAGAAATTTTTATATTAAAGGTATTCCATTTCTTTCAATTTCACCTTACCTTTTGTATTGATTACATAAATCATTAAAATTGATCAGACTTTCCCATCGATTTTGGTCAAAGTACCCAAAATTGGTTGACCAATTGGACATATATCCCACACCCACACCCATGTCGTGTTGACACAGGTGCGGCACCAAAAGTGAAGAGTCCAAGCGACTTAGACTTAGATTAGTTATCCATATTTGTGGGTGGAATAGTAATACCGTGTTAACTTATCCCATATATAAAAGTAAAATAACAAAAGTTTCCCCTTAGACCCTCTTTTATACATCACTTTTACATTCATATATATTCAAAAAAAGTTTAATATCATTTATAATAAGATTCACAACCTTCACTATTTGTTACTTTTATGATAATATGTTTTTTCATTAGAGAATTACACTATATAAATATAATTTTTATTTATGAATATATTATGTATCGAATTTATTTGATTGATTCTTATGTTTATTTATATTTTGATTTCTCTTCAAATGTTCACTCCACTCTTGAATTACATATTTTTAATTAAAGTCTTTTAATCACTGGAAAATTTGTACTTATTTATCAATTAAAATGAAGATAACTTAAATATTTACAATATGAGTGTGATATGTGCTTAAATAAAGTGACATCAATAATAAAATCTCTTTTACGTTAACAAACTTAAGATGAAAATTTTATTTTTAAGCTAAATAAGATGGAAGATCTATATTTTAAAACAAACGGCGCAATCATGAGAATGCACATGCAAATATATTTGAGTTAACTAAGATGAAATTATTTTAAGAATGAATTACTAAAGCTTGCGAAGGAAGTAACAAAAACTAAATAAGGTGGAGAGTGTTTTTGTAAACAAACAACTTATTCTTAGAAATTATGCAACACATATTATTTTGAATATGTTAAACCAAACAATCAATAAAAAATAATCCAACATAACTTATCTCATCGTAACTAATCCCAACATAATTTGTTTTCAAACCAAACGGCCCCTAATTAATTTGAACAAAAATTTAAGTTCAGAAGAACCTAACCAAAGATCGGAACACCCACCCTTAATTAGCACCCTACATGATCTCTCTGTGAAAACTTAGGTAGAAACTTTCTAGTCACTAATGGGGGTTTTGGTGTAAAGTAGAATATTTTTGTGCCCTTTCCCAAATATGAATTTCTTTGTGGCAATAAGGTGGAATATTTTATGATGTATTTGGGGAAAAATAAAATAAAATGGTAGTATCGTTTTTGATACATCTAGGTTATAGCTTGCACATTGGATTGACTGTTTTCCAACTTTCCTATGTCAACTTTGACTAGGCTAGTTAACCCTCTATGCTGTTTCATATCATGTTTTTTTGACTGAAAACAACGTTTTAAGATGATAATTTGTCTTATATATCATATAAGTGATAGTGGAGTTTTTTTTAATAAAAATGAATAGTTGAGAAGTTAGGTTGATAGGAAAATATTAAGTTTAAAACTTAATATATTTATGAATTTGAATTTTGGAGAGTTGTGAATGTTTTATAAACGTCCCAAGATGTCAAGATGGGAAGTATTAGAAACTGAAACAAAAGGAGTCTAGTTTTAGCACAAGTAATTTTGTAGCTTTACATTGAATTGAAGTTTAGAACTGTTTTAAAAATTAAAAAAATTAAAAATAAATAATAAAATTTAGAAATGTTCATGTTTTGGCAAGTTATCAGTGAGGTATGGTTATTCAAAGTCATGCAGAAAAGTAACCTCATTGTGTGGTGGGACAAGAGATTATAATCCCAGGATAAATTGTGGGATTATCTTATCCCATAGTTAGTACTCTCTCTGTGACAATTTATGTTAGCTCTGTCACGACCCAAATCCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCTAAACCTTAACATTTCAATGTAATAACAACAGAAAATAATGCGGAAGACTTAACTCATTAATAAAAACCAATTCAATAACTATCAATATTCAACATCTACTATTCTCAAAACCTGGAAGTCATCATCACAAGAACATCTACGATCAAATTACTAGACTAAGAGTATTCTAAAAGCTAAAACAAGTAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAGGAAGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCCCCCTGAAGATCCGATGTGACGAAGACTGACTAGAGTTGCGGTTGAGTTGAAGACGATGGCACGTTTGCTGCACTCCACAATTAACAAAGAAGAAAACATAAAAGTAGGGGGTCAGTACAAACACGGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATTAAGCAATATCATAAAATCAACTAATATCCTTAGCATGCAGCATTTATAGTTACCATAACCCTTGGTTACAACACCAAGTACATCAATGAGGACTCACACCTCCTCATCATACTCATTTGGGAATTTAGTTCATTAGATTGGATATATTATCATATTTCAAGATTCATTATCTTTATTCCCCTCGTGTCGGTACGTGACACTCCGCTCCTCAATATACTATTCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTTGGAACGCGACACCCGATCCATATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACCACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATTATTAACAAAGTAGATTAGGGTTTCTTTTCAAGATTTGGGATTCAATAGCTTCATCATGCTTATTTATTCACAATTACATAATCACATCATTCATGCAAGCATACAATTAAGCATATAGAAGGTTTACAATACTACTAACACATATCATTCGCTATTAAGAGTTTACTATGAATAGCCTGAAATAACCATAACCTACCTCCACCGAAGAATTGAAATCAAGTAAGTTAATCCTCAAAGCTTGGTGTTTTCCTCTTCTTCTCGATCGTTCCTCTCTCAATTCGTTTCTCTTTCCTTCTCTTTGTTCTTTCTAATTTTCTTTATTCAACCCTCTTTCTTTTACCCTAATTAATATATAATTAAGAATAAAAGATGGCAATAATACCCCACTAATTAACTTAGGGTTACCTCTTTTAACCCCCAAGAATTTGAGTTATTAATGTAAACCCACGAAATCTATAATTAAGGAAAGAATAGTCCAAAAACGTCCCTTAAAACGTGTAAGGAAATCCGATTCTGCCTGGGATTTGCGCAACCTGTGACGGGCTGTCGTGCCTGCGATGGTCCGTCCTGCAGGTCGTCGCAAGGGTCAGAGAGTCAATTTCCACTGAACAATCTATGACGGTCCGTCACGCCTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGTTCCCTGTACCAAATTCTCAAGAGTTGAAGTGTTTTGAAACGGTGGATCACGACGGTCCGTCGTGCCTATGACGGTCCGTCCTGCGTGTCCGTCACAGAGTTCAGAGAGTCGATTTCAGCACCCAAATTTCAGAATTTCTAAGTGTTTTGGGACGAGACACCCTCGACGGTCCGTCGTGCCCATGACGTTCCGTCATGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAATTGAAGTCTGTTGCTCAAAACGACTAAACGGGCCGTTACAAGCTCTTGTAACTTTTCAAGATTCAAACTATGCAAAAGTTGACCAACATTTTAAAATGTATTTTCTTTTAATTATATTGACATGTGATGAATTCCAGCTTATAGAGTTTTCTTTCTGTATAATTCTTTAATATCTTAATTTTAATCTTAAAATATTGAGTTGATCTATATTTAAATTTAGATATTCAATTTGACAAAAAGTGCCACATAAATTGCGATAGGAAGGGAATGCACTCTTTGATTCCGGGATAGGCAATCCCGAGATTGGTTATACCACCACTGTGGTATTATTTTTACTCCACGCTTCATATGGGATAACAATGCCGGGATTTTTTATACCACAATTATGGTATTATTTTACACCAGGCTTCTTTTGGGATAACAACCCTGGAATAGAACATGTCAAAATTTACTTACCCGAAGTTTTTCTCCCATAGAAATAGAGCTTTATCTCCATTTCTCTTATTTTAAGTCAAACATCTACCGGTAGAAGTTATAATATACTATAACTGCATTATAATCCTGGATAACTTGTTCCATAACCAAAAAAGTTAATTAGCAAACACACTTGACGATATGGGTGCAAGTCTATTGTACATTTTCACAAACTTCATTAACACTACAGTTGAAATGTTCACCTATACCTTGCCATTTGAAGTTTAGGGCAACAATTTTTTTCCTTAGCACTCACTTCTGATACTTTGGTGATATGCCTTTTTCAAATTTAACATGGAAGTTTCTGTAACTCAAGGGATGATATACTAAACAAATGTTCTAATTGGGGATACCTTTTTGTTTTTACTTATTTTTCCTTTGATATATGTATCTTGTGTCTCAATGATCTCTTTGCATCTTACTGATAAAAAACATCTCTTTGCATCTTTGGTTTGTCGGATTTGGTTGATAAGTGGTCAATAATGATTTTTGGTTTTTGTTGCAAATTCGTTTTGTAGATAACCATGTCTGCAGTTCGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAGGTTCATGACCACCTTCCATTTTATTTATAGAATAATTCCTTGTGCTTTATTTATTTCATTAGTGACTGTTAAAATTTTCAGGCTGTAGCTGTGAATAACCTCGGGAAATGGAAAACTGCCACCCAGATGATTGCATTGACCATCCTCCTGCTAACCAGAGATAGCAGGTAACTCTTGTTTTCAGTCTCCTGTATGAATTTGTTGAAACAAAAATTTTTGATAGAAATCTGATAATACTTTGACCATGTAATTATTCTCTTTAGTTTATCTGGAGCTGCCTCTCTTGTGGGTTCCGGTGTGATGTTGCTATATATATCAGCGTGGCTTGCTGTGTGGTCTCTGTTCGTTTATATGAGAAAGATATGGAAAGTGTTATTGAT</genome_strand>
        <mrna_strand>TTGCGTAAGTAATTATACAAACAATGCCCGGAACTCTCAAACTCAACAACGCTCTTGCCTCTATTTATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAG......................................................................................................ATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGATCCAGTGGCTGACAAG..................................................................................................................................................................TTAATGGTTGCTGCTACCTTGGTCTTGTTGTGCACCAAACCTTTGGAGTCCGGTGTGTTCGGACAGTTGCCATGGCTATTAACTGTCCCTTCGATTGCGATAATAGGCAGGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="44578" stop="43237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44278" g_stop="44006" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44005" i_stop="43781" i_length="225">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43780" g_stop="43537" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="515" r_length="244" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44278" e_stop="44006"/>
          <exon e_start="43780" e_stop="43537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCGCGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGAATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAG-A-ATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCAC.................................................................................................................................................................................................................................GTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346572" ref_strand="+" ref_description="SGN-U346572        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-31, score=89.7)">
      <seq>agatgatcaaccaggttctttctcatcttagcgggttatctgatcagggccagacacctccagtgtttcctgtaccagcacctcaggttccgggagtacaacatgcagctgttgtggctctccgcatggatgcctcattggaaataggcacatttcctcgattgactacagggcctataatgacgagtgatcaacatgaacttttcactaaattcttgaagttgaaacctctagtcttcaagggtgctgaatctgaggatgcctatgattttcttgttgattgtcatgagctgctacataagatggacatagtagaacggttcggggttgagtttgtgacctatcaatttcagggaaatgtcaaaatgtggtggcggtcgtatgttgagtgtcaaccagcacagcaccacctatgacttgggcatcattctctagcttatttatggaaaagtgtataccccggacgttgagggataggaggagagatgagttcctgagtctatagcaaggcaggatgtctgttactgcttatgaggctaaattttgtgcactatccaggtatgccacccagctttgcttcagtccacaagagcggattcaccgttttgtgaaaggattgaggtcagatttgcagatcccagccctacaggtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="+" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="61858" stop="63113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62158" g_stop="62813" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="+" ref_id="SGN-U346572" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62158" e_stop="62813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATGATTAACCAGGTTCTTACCTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGGCTACAGGACTTATAATGACAAGTGATCAGCATGAAGTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACTTATGACTTGGGCATCATTCTCTAGTTTATTTATGGAGAAGTATATACCCCGAACTTTGAGGGATAGGAGGAGAGAGGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTACTGCTTATGAGGCCAAATTTCGTGCACTATCTAGGTATGCTACCCAGCTTTGCTTCATTCCACAAGAGCGGATTTGCCGTTTTCTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTGGAT</genome_strand>
        <mrna_strand>AGATGATCAACCAGGTTCTTTCTCATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTCCTGTACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGTTGTGGCTCTCCGCATGGATGCCTCATTGGAAATAGGCACATTTCCTCGATTGACTACAGGGCCTATAATGACGAGTGATCAACATGAACTTTTCACTAAATTCTTGAAGTTGAAACCTCTAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTTGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGGTTCGGGGTTGAGTTTGTGACCTATCAATTTCAGGGAAATGTCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACA-GCACCACCTATGACTTGGGCATCATTCTCTAGCTTATTTATGGAAAAGTGTATACCCCGGACGTTGAGGGATAGGAGGAGAGATGAGTTCCTGAGTCTATAGCAAGGCAGGATGTCTGTTACTGCTTATGAGGCTAAATTTTGTGCACTATCCAGGTATGCCACCCAGCTTTGCTTCAGTCCACAAGAGCGGATTCACCGTTTTGTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCCTACAGGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0130G07-lfCct/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0130G07.1" temp_strand="-" temp_description="C04SLm0130G07.1  CU856335.2 htgs_phase:3 submitted_to_sgn_as:C04SLm0130G07 sequenced_by:sanger upload_account_name:uk">
        <position start="63999" stop="63069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63699" g_stop="63369" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0130G07.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0130G07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63699" e_stop="63369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGTCCCAGGTTTGGCCAATGTTACAGTTTTAGCATTACAGTCTAAGATTGCAAAATTTTTAGAAAGCCAAGTCATACCCAGAATTAAATCGAAATCAACCATTTCTAGAATAATCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACAGGAGTACAGACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCAGTAGCAAATGAGGGAGATACATATGAAAATGTGGATCCAAGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8559" PGL_stop="8209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8559" e_stop="8209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="8559" e_stop="8209" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8559" stop="8209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338416" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGATAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACAAAGGTCTTAACAAGAGAAAAGGTCTGGAGCAAATCGAGAGGGATGGGATAGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGAGGACTAGAGATCCTATAACCAGGCTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  D  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  A  D  P  L  T  K  V  L  T  R  E  K  V  W  S  K  S  R  G  M  G  *  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  E  D  *  R  S  Y  N  Q  A  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  P  S  L  *  C  E  C  I  I  S  Y  S  L  *  R  L  S  *  *  N </first_frame>
            <second_frame>  T  I  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  Q  R  S  *  Q  E  K  R  S  G  A  N  R  E  G  W  D  R  S  L  Q  I  L  E  S  Y  M  R  K  P  N  L  R  T  R  D  P  I  T  R  L  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  P  Y  D  V  S  A  L  F  P  I  V  C  E  G  *  V  D  K   </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  C  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  Q  I  E  R  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  *  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0130G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="26371" PGL_stop="26889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26371" e_stop="26889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="26371" e_stop="26889" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26371" stop="26889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343095" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGCGGAAAGTATGTTCTTGTGGTAGATTTTAACTAGATGAGATACCTTGTTCACATGCAATTTTTGTATTGAAAAAAAAGAATGTCACCGATATGAATCCGTATTGCTCTGATTATTACAAGCCTGATGCGTTGGCAAAAACATATGAAATTCCAATGGTACCAATGCCAGATAAGGAAGACTGGTCAGATCCTAAACACGTGGTAGCTGAAACTGTGTATCCACCTAGATACAGAAGATCATCTGGACGACCAAGAAAAAGAAGAAGAAAGAATGCAAATGAAAAGATTTCGGTGAACACAAACTGTTGTGGACAATGTGGACAAGAAGGGCACAACAGAAGAACTTGTACTTTCTACCCAAAAGAGAAGTGAATTAGTCTTAATGTTTCTATGATATCAAGAATAATTTATAACGTAAACATTTTAATGAATTTCAGTTTTCATTACAACTGCAAATTAAACACTTTGTGTTTACATAAATAAACTTACAAACATGTGGTAATTAAATTTGAA</gDNA_template>
            <first_frame> L  E  R  K  V  C  S  C  G  R  F  *  L  D  E  I  P  C  S  H  A  I  F  V  L  K  K  K  N  V  T  D  M  N  P  Y  C  S  D  Y  Y  K  P  D  A  L  A  K  T  Y  E  I  P  M  V  P  M  P  D  K  E  D  W  S  D  P  K  H  V  V  A  E  T  V  Y  P  P  R  Y  R  R  S  S  G  R  P  R  K  R  R  R  K  N  A  N  E  K  I  S  V  N  T  N  C  C  G  Q  C  G  Q  E  G  H  N  R  R  T  C  T  F  Y  P  K  E  K  *  I  S  L  N  V  S  M  I  S  R  I  I  Y  N  V  N  I  L  M  N  F  S  F  H  Y  N  C  K  L  N  T  L  C  L  H  K  *  T  Y  K  H  V  V  I  K  F  E </first_frame>
            <second_frame>  L  S  G  K  Y  V  L  V  V  D  F  N  *  M  R  Y  L  V  H  M  Q  F  L  Y  *  K  K  R  M  S  P  I  *  I  R  I  A  L  I  I  T  S  L  M  R  W  Q  K  H  M  K  F  Q  W  Y  Q  C  Q  I  R  K  T  G  Q  I  L  N  T  W  *  L  K  L  C  I  H  L  D  T  E  D  H  L  D  D  Q  E  K  E  E  E  R  M  Q  M  K  R  F  R  *  T  Q  T  V  V  D  N  V  D  K  K  G  T  T  E  E  L  V  L  S  T  Q  K  R  S  E  L  V  L  M  F  L  *  Y  Q  E  *  F  I  T  *  T  F  *  *  I  S  V  F  I  T  T  A  N  *  T  L  C  V  Y  I  N  K  L  T  N  M  W  *  L  N  L   </second_frame>
            <third_frame>   *  A  E  S  M  F  L  W  *  I  L  T  R  *  D  T  L  F  T  C  N  F  C  I  E  K  K  E  C  H  R  Y  E  S  V  L  L  *  L  L  Q  A  *  C  V  G  K  N  I  *  N  S  N  G  T  N  A  R  *  G  R  L  V  R  S  *  T  R  G  S  *  N  C  V  S  T  *  I  Q  K  I  I  W  T  T  K  K  K  K  K  K  E  C  K  *  K  D  F  G  E  H  K  L  L  W  T  M  W  T  R  R  A  Q  Q  K  N  L  Y  F  L  P  K  R  E  V  N  *  S  *  C  F  Y  D  I  K  N  N  L  *  R  K  H  F  N  E  F  Q  F  S  L  Q  L  Q  I  K  H  F  V  F  T  *  I  N  L  Q  T  C  G  N  *  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26407" stop="26748"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDEIPCSHAIFVLKKKNVTDMNPYCSDYYKPDALAKTYEIPMVPMPDKEDWSDPKHVVAETVYPPRYRRSSGRPRKRRRKNANEKISVNTNCCGQCGQEGHNRRTCTFYPKEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30259" PGL_stop="29347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30259" e_stop="29976"/>
            <exon e_start="29772" e_stop="29650"/>
            <exon e_start="29565" e_stop="29347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.905"/>
          <exon-intron don_prob="0.990" acc_prob="0.985" e_score="0.927"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="30259" e_stop="29976" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29975" i_stop="29773" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="0.927">
            <gDNA_exon_boundary e_start="29772" e_stop="29650" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.985">
            <gDNA_intron_boundary i_start="29649" i_stop="29566" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="29565" e_stop="29347" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30259" stop="29976"/>
              <exon start="29772" stop="29650"/>
              <exon start="29565" stop="29347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342680" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGATTATTTTGATAAAAGCAAATCACTCCCAGCTGATGCAATCTATAGGCAAGGAAAACATCAATTTTCAGGCTAATACAAGCACATTTCAGTCTGACAAACAAACATCTCAGCAAATACCAATTGATCTCGATGATATGGGCGGTGTAAATGAGGATGGTGGTGGTTTTTCTAGTAAAAATGGTGAACATCATATCGTTGACGATGCAGAGGATGTCGATGTGGATGGTGTTGGTGTTTCCGTAAATGAGGGTGAACAACTAGTCAGTGATAATCCAAAG : GATGGTGACGCACATCAGTCGCACCAAGATTTAAATGAACATATCATGGACCAAGACGTTGATGACAATGTTCAGCACAACATCCCTCATGTTTTGCCTGAAAAAACAACAACGGATGCATAG : GAATGTTCCACTTCAACAACAATATCACCATCAACTCAAGCAGCAATAGATGCGCTTATCAAAGATTTGGCTAAAGATCCTACTAATGCTAGACCATTATATTCTTACGATCCGCAGAATATAACTAGCAGCCAGTACTTGTTGACCGACAGTCAATTACCCACTGATATTCCAATAACGGAGATTGTTGTTAATACTGATGCAGTCACTCCTGCGCAT</gDNA_template>
            <first_frame> N  *  L  F  *  *  K  Q  I  T  P  S  *  C  N  L  *  A  R  K  T  S  I  F  R  L  I  Q  A  H  F  S  L  T  N  K  H  L  S  K  Y  Q  L  I  S  M  I  W  A  V  *  M  R  M  V  V  V  F  L  V  K  M  V  N  I  I  S  L  T  M  Q  R  M  S  M  W  M  V  L  V  F  P  *  M  R  V  N  N  *  S  V  I  I  Q  R :   M  V  T  H  I  S  R  T  K  I  *  M  N  I  S  W  T  K  T  L  M  T  M  F  S  T  T  S  L  M  F  C  L  K  K  Q  Q  R  M  H  R :   N  V  P  L  Q  Q  Q  Y  H  H  Q  L  K  Q  Q  *  M  R  L  S  K  I  W  L  K  I  L  L  M  L  D  H  Y  I  L  T  I  R  R  I  *  L  A  A  S  T  C  *  P  T  V  N  Y  P  L  I  F  Q  *  R  R  L  L  L  I  L  M  Q  S  L  L  R   </first_frame>
            <second_frame>  T  D  Y  F  D  K  S  K  S  L  P  A  D  A  I  Y  R  Q  G  K  H  Q  F  S  G  *  Y  K  H  I  S  V  *  Q  T  N  I  S  A  N  T  N  *  S  R  *  Y  G  R  C  K  *  G  W  W  W  F  F  *  *  K  W  *  T  S  Y  R  *  R  C  R  G  C  R  C  G  W  C  W  C  F  R  K  *  G  *  T  T  S  Q  *  *  S  K   : G  W  *  R  T  S  V  A  P  R  F  K  *  T  Y  H  G  P  R  R  *  *  Q  C  S  A  Q  H  P  S  C  F  A  *  K  N  N  N  G  C  I   : G  M  F  H  F  N  N  N  I  T  I  N  S  S  S  N  R  C  A  Y  Q  R  F  G  *  R  S  Y  *  C  *  T  I  I  F  L  R  S  A  E  Y  N  *  Q  P  V  L  V  D  R  Q  S  I  T  H  *  Y  S  N  N  G  D  C  C  *  Y  *  C  S  H  S  C  A  </second_frame>
            <third_frame>   L  I  I  L  I  K  A  N  H  S  Q  L  M  Q  S  I  G  K  E  N  I  N  F  Q  A  N  T  S  T  F  Q  S  D  K  Q  T  S  Q  Q  I  P  I  D  L  D  D  M  G  G  V  N  E  D  G  G  G  F  S  S  K  N  G  E  H  H  I  V  D  D  A  E  D  V  D  V  D  G  V  G  V  S  V  N  E  G  E  Q  L  V  S  D  N  P  K  :  D  G  D  A  H  Q  S  H  Q  D  L  N  E  H  I  M  D  Q  D  V  D  D  N  V  Q  H  N  I  P  H  V  L  P  E  K  T  T  T  D  A  *  :  E  C  S  T  S  T  T  I  S  P  S  T  Q  A  A  I  D  A  L  I  K  D  L  A  K  D  P  T  N  A  R  P  L  Y  S  Y  D  P  Q  N  I  T  S  S  Q  Y  L  L  T  D  S  Q  L  P  T  D  I  P  I  T  E  I  V  V  N  T  D  A  V  T  P  A  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30257" stop="29976"/>
                    <exon start="29772" stop="29650"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIILIKANHSQLMQSIGKENINFQANTSTFQSDKQTSQQIPIDLDDMGGVNEDGGGFSSKNGEHHIVDDAEDVDVDGVGVSVNEGEQLVSDNPKDGDAHQSHQDLNEHIMDQDVDDNVQHNIPHVLPEKTTTDA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29565" stop="29347"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECSTSTTISPSTQAAIDALIKDLAKDPTNARPLYSYDPQNITSSQYLLTDSQLPTDIPITEIVVNTDAVTPAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="33338" PGL_stop="46595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33338" e_stop="33757"/>
            <exon e_start="39464" e_stop="39561"/>
            <exon e_start="39664" e_stop="39714"/>
            <exon e_start="39877" e_stop="39990"/>
            <exon e_start="46159" e_stop="46215"/>
            <exon e_start="46297" e_stop="46382"/>
            <exon e_start="46479" e_stop="46595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.959" acc_prob="0.488" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.575" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33338" e_stop="33757" e_length="420"/>
          </exon>
          <intron i_serial="1" don_prob="0.959" acc_prob="0.488">
            <gDNA_intron_boundary i_start="33758" i_stop="39463" i_length="5706"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39464" e_stop="39561" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.976">
            <gDNA_intron_boundary i_start="39562" i_stop="39663" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39664" e_stop="39714" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.899">
            <gDNA_intron_boundary i_start="39715" i_stop="39876" i_length="162"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39877" e_stop="39990" e_length="114"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39991" i_stop="46158" i_length="6168"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46159" e_stop="46215" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46216" i_stop="46296" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46297" e_stop="46382" e_length="86"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.575">
            <gDNA_intron_boundary i_start="46383" i_stop="46478" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="46479" e_stop="46595" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33338" stop="33757"/>
              <exon start="39464" stop="39561"/>
              <exon start="39664" stop="39714"/>
              <exon start="39877" stop="39990"/>
              <exon start="46159" stop="46215"/>
              <exon start="46297" stop="46382"/>
              <exon start="46479" stop="46595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCGTAAGTAATTATACAAACAATGCCCGGAACTCTCAAACTCAACAACGCTCTTGCCTCTATTTATTACTACAATTCTCACAAGCCCTATAATTGGTTGCGCTCTTTTACCTCCCTTACCGGCACCGGCATTTCTAACTCCTCCATCACCGTCGCTGCCGCTCACAAGCGCTACTCTTTGTATATTCCGCCCGACGGTGATTCCCCTTCCCGTCGGAAATTCCTAGGGCGTTTAGGTCACGGATATGCTCTAAGAAGTATTTCTACTACTCAGATGGGACCCACCCCTGATCACAAGGAGGAGGATCTCCGCCGTGAAAAATCATCTCTCCCTATACCCTCCAAGTCTGAAAAGTTGCTTACATTGCCCACGATTTTAACAATTGGCCGTGTGGCTGCTGTTCCGCTTTTGGTAACCA : CATTCTATGTTGATAGCTGGTGGGGGCCAAATGCTACAACGGCTATATTTATTGCAGCAGCTGTAACTGACTGGCTTGATGGATACCTTGCTCGCAAG : ATGAACTTAGGAACTGCCTTTGGTGCGTTTTTAGATCCAGTGGCTGACAAG : TTAATGGTTGCTGCTACCTTGGTCTTGTTGTGCACCAAACCTTTGGAGTCCGGTGTGTTCGGACAGTTGCCATGGCTATTAACTGTCCCTTCGATTGCGATAATAGGCAGGGAG : ATAACCATGTCTGCAGTTCGAGAATGGGCGGCTTCTCAGGGTGGTAAACTTTCAGAG : GCTGTAGCTGTGAATAACCTCGGGAAATGGAAAACTGCCACCCAGATGATTGCATTGACCATCCTCCTGCTAACCAGAGATAGCAG : TTTATCTGGAGCTGCCTCTCTTGTGGGTTCCGGTGTGATGTTGCTATATATATCAGCGTGGCTTGCTGTGTGGTCTCTGTTCGTTTATATGAGAAAGATATGGAAAGTGTTATTGAT</gDNA_template>
            <first_frame> L  R  K  *  L  Y  K  Q  C  P  E  L  S  N  S  T  T  L  L  P  L  F  I  T  T  I  L  T  S  P  I  I  G  C  A  L  L  P  P  L  P  A  P  A  F  L  T  P  P  S  P  S  L  P  L  T  S  A  T  L  C  I  F  R  P  T  V  I  P  L  P  V  G  N  S  *  G  V  *  V  T  D  M  L  *  E  V  F  L  L  L  R  W  D  P  P  L  I  T  R  R  R  I  S  A  V  K  N  H  L  S  L  Y  P  P  S  L  K  S  C  L  H  C  P  R  F  *  Q  L  A  V  W  L  L  F  R  F  W  *  P  :  H  S  M  L  I  A  G  G  G  Q  M  L  Q  R  L  Y  L  L  Q  Q  L  *  L  T  G  L  M  D  T  L  L  A  R :   *  T  *  E  L  P  L  V  R  F  *  I  Q  W  L  T  S :   *  W  L  L  L  P  W  S  C  C  A  P  N  L  W  S  P  V  C  S  D  S  C  H  G  Y  *  L  S  L  R  L  R  *  *  A  G  R :   *  P  C  L  Q  F  E  N  G  R  L  L  R  V  V  N  F  Q  R :   L  *  L  *  I  T  S  G  N  G  K  L  P  P  R  *  L  H  *  P  S  S  C  *  P  E  I  A   : V  Y  L  E  L  P  L  L  W  V  P  V  *  C  C  Y  I  Y  Q  R  G  L  L  C  G  L  C  S  F  I  *  E  R  Y  G  K  C  Y  *  </first_frame>
            <second_frame>  C  V  S  N  Y  T  N  N  A  R  N  S  Q  T  Q  Q  R  S  C  L  Y  L  L  L  Q  F  S  Q  A  L  *  L  V  A  L  F  Y  L  P  Y  R  H  R  H  F  *  L  L  H  H  R  R  C  R  S  Q  A  L  L  F  V  Y  S  A  R  R  *  F  P  F  P  S  E  I  P  R  A  F  R  S  R  I  C  S  K  K  Y  F  Y  Y  S  D  G  T  H  P  *  S  Q  G  G  G  S  P  P  *  K  I  I  S  P  Y  T  L  Q  V  *  K  V  A  Y  I  A  H  D  F  N  N  W  P  C  G  C  C  S  A  F  G  N  H :   I  L  C  *  *  L  V  G  A  K  C  Y  N  G  Y  I  Y  C  S  S  C  N  *  L  A  *  W  I  P  C  S  Q   : D  E  L  R  N  C  L  W  C  V  F  R  S  S  G  *  Q   : V  N  G  C  C  Y  L  G  L  V  V  H  Q  T  F  G  V  R  C  V  R  T  V  A  M  A  I  N  C  P  F  D  C  D  N  R  Q  G   : D  N  H  V  C  S  S  R  M  G  G  F  S  G  W  *  T  F  R   : G  C  S  C  E  *  P  R  E  M  E  N  C  H  P  D  D  C  I  D  H  P  P  A  N  Q  R  *  Q  :  F  I  W  S  C  L  S  C  G  F  R  C  D  V  A  I  Y  I  S  V  A  C  C  V  V  S  V  R  L  Y  E  K  D  M  E  S  V  I  D </second_frame>
            <third_frame>   A  *  V  I  I  Q  T  M  P  G  T  L  K  L  N  N  A  L  A  S  I  Y  Y  Y  N  S  H  K  P  Y  N  W  L  R  S  F  T  S  L  T  G  T  G  I  S  N  S  S  I  T  V  A  A  A  H  K  R  Y  S  L  Y  I  P  P  D  G  D  S  P  S  R  R  K  F  L  G  R  L  G  H  G  Y  A  L  R  S  I  S  T  T  Q  M  G  P  T  P  D  H  K  E  E  D  L  R  R  E  K  S  S  L  P  I  P  S  K  S  E  K  L  L  T  L  P  T  I  L  T  I  G  R  V  A  A  V  P  L  L  V  T   : T  F  Y  V  D  S  W  W  G  P  N  A  T  T  A  I  F  I  A  A  A  V  T  D  W  L  D  G  Y  L  A  R  K  :  M  N  L  G  T  A  F  G  A  F  L  D  P  V  A  D  K  :  L  M  V  A  A  T  L  V  L  L  C  T  K  P  L  E  S  G  V  F  G  Q  L  P  W  L  L  T  V  P  S  I  A  I  I  G  R  E  :  I  T  M  S  A  V  R  E  W  A  A  S  Q  G  G  K  L  S  E  :  A  V  A  V  N  N  L  G  K  W  K  T  A  T  Q  M  I  A  L  T  I  L  L  L  T  R  D  S  S :   L  S  G  A  A  S  L  V  G  S  G  V  M  L  L  Y  I  S  A  W  L  A  V  W  S  L  F  V  Y  M  R  K  I  W  K  V  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33346" stop="33757"/>
                    <exon start="39464" stop="39561"/>
                    <exon start="39664" stop="39714"/>
                    <exon start="39877" stop="39990"/>
                    <exon start="46159" stop="46215"/>
                    <exon start="46297" stop="46382"/>
                    <exon start="46479" stop="46593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIIQTMPGTLKLNNALASIYYYNSHKPYNWLRSFTSLTGTGISNSSITVAAAHKRYSLYIPPDGDSPSRRKFLGRLGHGYALRSISTTQMGPTPDHKEEDLRREKSSLPIPSKSEKLLTLPTILTIGRVAAVPLLVTTFYVDSWWGPNATTAIFIAAAVTDWLDGYLARKMNLGTAFGAFLDPVADKLMVAATLVLLCTKPLESGVFGQLPWLLTVPSIAIIGREITMSAVREWAASQGGKLSEAVAVNNLGKWKTATQMIALTILLLTRDSSLSGAASLVGSGVMLLYISAWLAVWSLFVYMRKIWKVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="44278" PGL_stop="43537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44278" e_stop="44006"/>
            <exon e_start="43780" e_stop="43537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.974"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="44278" e_stop="44006" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44005" i_stop="43781" i_length="225"/>
          </intron>
          <exon e_serial="2" e_score="0.914">
            <gDNA_exon_boundary e_start="43780" e_stop="43537" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44278" stop="44006"/>
              <exon start="43780" stop="43537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCAC : GTTCCGACACCAGAATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTACTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  :  V  P  T  P  E  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  Y  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </first_frame>
            <second_frame>  L  I  Y  F  V  N  N  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T :   F  R  H  Q  N  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  Y  L  V  L  *  P  R  V  M  V  T  I  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </second_frame>
            <third_frame>   *  S  T  L  L  I  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S   : R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  T  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0130G07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="62158" PGL_stop="62813"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62158" e_stop="62813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="62158" e_stop="62813" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62158" stop="62813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346572" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATGATTAACCAGGTTCTTACCTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGAGTACAACATGCAGCTGCTGTGGCTCCCCGCATGGATGCCTCATTGGAAGTAGGCACGTTTCCTCGATTGGCTACAGGACTTATAATGACAAGTGATCAGCATGAAGTTTTCACTAAATTCTTGAAGTTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGATTGTCATGAGCTGCTACATAAGATGGACATAGTAGAACGATTCGGTGTTGAGTTTGTGACCTATCAGTTTCAGGGGAATGCCAAAATGTGGTGGCGGTCGTATGTTGAGTGTCAACCAGCACAGGCACCACTTATGACTTGGGCATCATTCTCTAGTTTATTTATGGAGAAGTATATACCCCGAACTTTGAGGGATAGGAGGAGAGAGGAGTTCCTGAGCCTAGAGCAAGGAAGGATGTCTGTTACTGCTTATGAGGCCAAATTTCGTGCACTATCTAGGTATGCTACCCAGCTTTGCTTCATTCCACAAGAGCGGATTTGCCGTTTTCTGAAAGGATTGAGGTCAGATTTGCAGATCCCAGCCTTACAGGTGGAT</gDNA_template>
            <first_frame> R  *  L  T  R  F  L  P  I  L  A  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  E  Y  N  M  Q  L  L  W  L  P  A  W  M  P  H  W  K  *  A  R  F  L  D  W  L  Q  D  L  *  *  Q  V  I  S  M  K  F  S  L  N  S  *  S  *  N  L  Q  S  S  R  V  L  N  L  R  M  P  M  I  F  W  L  I  V  M  S  C  Y  I  R  W  T  *  *  N  D  S  V  L  S  L  *  P  I  S  F  R  G  M  P  K  C  G  G  G  R  M  L  S  V  N  Q  H  R  H  H  L  *  L  G  H  H  S  L  V  Y  L  W  R  S  I  Y  P  E  L  *  G  I  G  G  E  R  S  S  *  A  *  S  K  E  G  C  L  L  L  L  M  R  P  N  F  V  H  Y  L  G  M  L  P  S  F  A  S  F  H  K  S  G  F  A  V  F  *  K  D  *  G  Q  I  C  R  S  Q  P  Y  R  W   </first_frame>
            <second_frame>  D  D  *  P  G  S  Y  L  S  *  R  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  S  T  T  C  S  C  C  G  S  P  H  G  C  L  I  G  S  R  H  V  S  S  I  G  Y  R  T  Y  N  D  K  *  S  A  *  S  F  H  *  I  L  E  V  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  *  F  S  G  *  L  S  *  A  A  T  *  D  G  H  S  R  T  I  R  C  *  V  C  D  L  S  V  S  G  E  C  Q  N  V  V  A  V  V  C  *  V  S  T  S  T  G  T  T  Y  D  L  G  I  I  L  *  F  I  Y  G  E  V  Y  T  P  N  F  E  G  *  E  E  R  G  V  P  E  P  R  A  R  K  D  V  C  Y  C  L  *  G  Q  I  S  C  T  I  *  V  C  Y  P  A  L  L  H  S  T  R  A  D  L  P  F  S  E  R  I  E  V  R  F  A  D  P  S  L  T  G  G  </second_frame>
            <third_frame>   M  I  N  Q  V  L  T  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  A  V  A  P  R  M  D  A  S  L  E  V  G  T  F  P  R  L  A  T  G  L  I  M  T  S  D  Q  H  E  V  F  T  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  D  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  Y  V  E  C  Q  P  A  Q  A  P  L  M  T  W  A  S  F  S  S  L  F  M  E  K  Y  I  P  R  T  L  R  D  R  R  R  E  E  F  L  S  L  E  Q  G  R  M  S  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  I  P  Q  E  R  I  C  R  F  L  K  G  L  R  S  D  L  Q  I  P  A  L  Q  V  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62160" stop="62813"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MINQVLTYLSGLSDQGQTPPVFSAPAPQVPGVQHAAAVAPRMDASLEVGTFPRLATGLIMTSDQHEVFTKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMDIVERFGVEFVTYQFQGNAKMWWRSYVECQPAQAPLMTWASFSSLFMEKYIPRTLRDRRREEFLSLEQGRMSVTAYEAKFRALSRYATQLCFIPQERICRFLKGLRSDLQIPALQVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="63699" PGL_stop="63369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63699" e_stop="63369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="63699" e_stop="63369" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63699" stop="63369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCAGTCCCAGGTTTGGCCAATGTTACAGTTTTAGCATTACAGTCTAAGATTGCAAAATTTTTAGAAAGCCAAGTCATACCCAGAATTAAATCGAAATCAACCATTTCTAGAATAATCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACAAGACAAGACCTATACACCTTCTCAACTATCACAGACTCACCCACAGGAGTACAGACACGAATAGGCATGTCAAGCAATTCACAATGTAAATCAAGACCAGTAGCAAATGAGGGAGATACATATGAAAATGTGGATCCAAGATCAAATAATACAGAAGCCATGCAATCACAAACCAA</gDNA_template>
            <first_frame> D  Q  S  Q  V  W  P  M  L  Q  F  *  H  Y  S  L  R  L  Q  N  F  *  K  A  K  S  Y  P  E  L  N  R  N  Q  P  F  L  E  *  S  S  L  H  E  Y  C  S  P  Q  K  S  Q  D  K  T  Y  T  P  S  Q  L  S  Q  T  H  P  Q  E  Y  R  H  E  *  A  C  Q  A  I  H  N  V  N  Q  D  Q  *  Q  M  R  E  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  C  N  H  K  P  </first_frame>
            <second_frame>  I  S  P  R  F  G  Q  C  Y  S  F  S  I  T  V  *  D  C  K  I  F  R  K  P  S  H  T  Q  N  *  I  E  I  N  H  F  *  N  N  Q  V  Y  M  S  I  A  P  H  K  S  H  K  T  R  P  I  H  L  L  N  Y  H  R  L  T  H  R  S  T  D  T  N  R  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  G  R  Y  I  *  K  C  G  S  K  I  K  *  Y  R  S  H  A  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  L  E  S  Q  V  I  P  R  I  K  S  K  S  T  I  S  R  I  I  K  S  T  *  V  L  L  P  T  K  V  T  R  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  Q  T  R  I  G  M  S  S  N  S  Q  C  K  S  R  P  V  A  N  E  G  D  T  Y  E  N  V  D  P  R  S  N  N  T  E  A  M  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0130G07.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63568" stop="63371"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRQDLYTFSTITDSPTGVQTRIGMSSNSQCKSRPVANEGDTYENVDPRSNNTEAMQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 63 chains have been computed
$ 
$ memory statistics:
$ 15512 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2216 bytes was the average size of a spliced alignment
$ 12872 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1838 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 87 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:59:14
-->
