<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 04:08:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319645" ref_strand="+" ref_description="SGN-U319645        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 2e-39, score=160) genbank/nr: gi|15237638|ref|NP_201222.1| expressed protein [Arabidopsis thaliana](evalue: 2e-37, score=160)">
      <seq>ttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtttgtccaaccctatccacaattaaatctaaaaaaagctgtctcgtgactctttctgctaaggactcctgtgcgacaaatcagatgcagttgatggaaagcttacctgatccttcttttcaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8412" stop="2709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8112" g_stop="8057" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7956" g_stop="7620" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="393" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5558" g_stop="4953" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="999" r_length="606" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3842" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1148" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3563" g_stop="3434" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1149" r_stop="1278" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3349" g_stop="3019" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1609" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1610" polyA_stop="1628"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U319645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1609</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8112" e_stop="8057"/>
          <exon e_start="7956" e_stop="7620"/>
          <exon e_start="5558" e_stop="4953"/>
          <exon e_start="3990" e_stop="3842"/>
          <exon e_start="3563" e_stop="3434"/>
          <exon e_start="3349" e_stop="3019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</genome_strand>
        <mrna_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319644" ref_strand="+" ref_description="SGN-U319644        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 1e-13, score=73.6) genbank/nr: gi|15237638|ref|NP_201222.1| expressed protein [Arabidopsis thaliana](evalue: 9e-12, score=73.6)">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="8173" stop="3540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7873" g_stop="7620" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5558" g_stop="5396" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5171" g_stop="4953" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3990" g_stop="3842" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="785" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3563" g_stop="3554" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="795" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U319644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7873" e_stop="7620"/>
          <exon e_start="5558" e_stop="5396"/>
          <exon e_start="5171" e_stop="4953"/>
          <exon e_start="3990" e_stop="3842"/>
          <exon e_start="3563" e_stop="3554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326880" ref_strand="+" ref_description="SGN-U326880        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 2e-05, score=37.7)">
      <seq>acaagtaattttggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatcttggttttcttgatagtaatcatgaggataaaaagtagtaccgagctcttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcngaaagttgtgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="9440" stop="7741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9140" g_stop="8057" g_length="1084"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1086" r_length="1086" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7956" g_stop="7942" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1101" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U326880" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1099</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9140" e_stop="8057"/>
          <exon e_start="7956" e_stop="7942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGAT-AAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG-GTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAAC</genome_strand>
        <mrna_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCNGA....................................................................................................AAGTTGTGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U330601" ref_strand="+" ref_description="SGN-U330601        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CD2-binding protein-related, similar to CD2 cytoplasmic domain binding protein (Homo sapiens) GI:3983427 | chr5:2913535-2915924 FORWARD | Aliases: T5E8.190, T5E8_190(evalue: 2e-43, score=171) genbank/nr: AT5g09390/T5E8_190-related(evalue: 1e-49, score=198)">
      <seq>accgctctctcttcaatttgccccttcattttttttcctttctgaatccttcatatcaattgccgattacgccatggaagaaggttcatcgcgacgtgccaaacgtcccttcgttgaggacgatgactccaataaagctccagagcagaagcgtgtaaggttcccaaagggtaagaaggcaaagcagggcgataccacgattgatgggtgtgaagataaacctagtgggcggacagatcctcgcaatgcagccaaagagcgttcggcacggcggaatcaaataacagcggaactccttgatgaagaaaacgaaggtgaaatagctgacatatcgcgggcagaagtggaatatgaggaaaatgaaacattcattgatgatgggattgcaatagaaccttttaatctgaataaagagagagaagaaggttattttgatgcatcaggaaactatgttgaatatttaaatgaaaatgagataaaggatgcatggcttgatagtgttgatactgagaaaacatattctgggaagaaagctatcaagatatcaaatgaagatgagattcaagaccttacatcagaacaactaggaaagatgaagaggcgaattgctgatgtgctcgaaccaggagaaacagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="19440" stop="15201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19140" g_stop="18997" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18996" i_stop="17191" i_length="1806">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17190" g_stop="16980" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="355" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16979" i_stop="15859" i_length="1121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15858" g_stop="15733" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="481" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15732" i_stop="15656" i_length="77">
            <donor d_prob="0.812" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15655" g_stop="15503" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="634" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U330601" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19140" e_stop="18997"/>
          <exon e_start="17190" e_stop="16980"/>
          <exon e_start="15858" e_stop="15733"/>
          <exon e_start="15655" e_stop="15503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGAGTAACTATTTCCTTCCTTCTTTCTTTTTATTTTTTATTTTTGAAAAATTTCATGTGATTTTGTGCCCTAATTTATTCTGAACATACTTAGGGATTCTGCACAGATGAAAGCTCATATTCATTTGTTATATTGATTTCGGAATATAAAATTTGAGCTGTAAGTTTGTGATTTCTTAGTAAATAATATTTTGTATATGTTTGAAACATAGTGGTGAAACCCCAAGGGTGTGGCTTAGTGATTAATGAAGTGGTTGAGAATTCTGAGGTCTTATAAAACTCAGGGAAGACAACAAAGTTATTTGGTGGGAGGTGGGACGTATCCAATGTATTTGGATACCAAGGTCATTAAAATTAACAAAAAACTTCTCAAAGGGTGTGGCTTAGTGGTCAAGGGAGGTGGGTTGAGCATCATGAGGTCTAATGTTCAATTTCTAGTAGAGACAAAAATGCTAGATGATTTTTTTCTATTTGTCCTAGTTTTGGTGGACAGAGTTACCTGATAGTTGTTAATGGTGAGAGGTGGAATTAGTTGAGGTGTGGGAAAACTGGCGTGAACACCACAATCATAATAAAAACATAATGCGAAAGGAAACCAATTTATTTTACCATTGAAATTTAATGACATTGATTTCATAAAAAAGTGAATAAGGAAGGGTGTGATCTAGTGGTTAATGAAGTGAGTTGAGAACCATGAGGTCTAAGGTTCAAATTCCAACATAGAGAAGAAAAGTGATTTCTTTCTACCTGTCCTAGCCTTGAGGATAGAGTTACTTTATAGCTGTTTTGGTGGGGAGCGACAGATATCTATGTAATTAGTTAAGGTGCGCATAAGCTGGTCTAGTAACTACAGTTGTCTAAAAAACGAAAGAAGTGAACTAGGGGGAGTATTTTGTATCAATAGAAAGATAAAAATAGATAAATAAGTAAGGAAGCTCATTTTTGTTTTTATAACTCAATTAATTCTATCCTATGGGATCTCTACTACCTCCCATCCACATAGATATCACTTTACTGTGTCAATTGAGGCTTAAATAGATAGGGAGAATACACATAGTATTTTTTGCTTCTGCTGGGATTGATTTATTATGTCATTATTGTAAGAATTTTAGGAGCTTCCCAGAGGAGTTCAGGAGTATGTACTTGGATTTGCTTTCTTTCAGCTGCTATCTATTTTTGTTATTCTGCAAATGCGCCCAGATTCTATTAGCTTGTTTTTTCCTAATCTGAATTACCGTTGATTTCATATATGATGTGAACCTGGAGCAAAAATCTAGTGGGAATGGGTGGATTGTGTATTCTTAGTACCTAGAAAATGTCTAATAAAGAAGGGTGTGTTTGGCCTTGAGAGAACTATGCAAGAAAATACTTTATTTGTTGGAGATTTAAGGAATTATACAGTGACTATGCCTCATGCCCAAACTAATTGGATTAGTTATATGTAATCTCTATATCTATTTACTCTAACTGTGATCATTTCATTCCAGTGCTCAATAGTTTGTCTTTGAAGATAAAGTAGACTGCTTTCTTTTTCAGATTAGAGGTTGTATTTTGTTGTTGAGACTGTCATGAGTTTAGTACGAGAAAAAATAGATCTTTTTTACCTACTGTTATTTTCCTTGTAAAGATAATGTGTTTCATGAGACAGCAATAGCAAGTAATACAACTTCAAATAGCGTTTTTTTTTTCCATGTGACGTCTGCCATGCTCTATGACAACCTCATTTGTTGGGTTCAAAATAGTTTCATTTATGATGCTGGATTTTAAGGATGTTTGCATTGACATGTTGCTTTCTTCCTCAACATCACAGGCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAGGTTTGTCCTTCCAATATCTGTTATTCCATAATTGTTTGATTGTAGTTAGGTACTTTGTGGATATCTGATGTCTACTTCATATCTCTTGATAAGGAAGTGATACTAGGATTATTACAAACTTTTTTGGGGCTTGGCATGATTTGTGCTGCGTGTTTAGCTAGAACAACTTAGATATGGGTAATCTTCTTTAAAAGAGCTGAGATATGGGTACTCATGCACAATTGAAAACCATAAATAATCATGATTGCTAATTATATTCCCCAAGTAGTAAGTAGTAACGTAAGCAAAATAGGGACCATCTGTAACTTCATTTTAAAAACCCCACTAATACATATCAATCCTTATGCTCTTGAAACAAAGGTCAAGGAGACAGAATGGTGTTTTTTCTTAGCATATAGCGGCTCATCAAAAGGAATAGCATAAGGTTGCATGCCATGTGTAAAGGAATCATCATCAAATAATTGTGCGCTTCACTTAATAAAGCATGTGCCTTACTTCTCTCCTATTCATTTCAAGCCTCGCAGACGCTTTTTTTGCACTTTTCACTTTTAAATTCACTGAGCATGAATCGTTGTTTCTGTGTCCAATAGGCTTGTCTCATTCTATCTTATGTAGAGTTCTTCCTTGGACTTTATGAACTGTGGGTTTTTGAACTTTACAAATAGAAAATGGGTAAGATTTAAATTCTGCACGTACTTTAATTTGCATAGAGATGAGAATAGGATTACAAAGAAGAAAAGAATTTATCTGAGTTCCCTTGAATAAATTTTTCCTGTTCTTCATAATTCCCTCGCCAATGAAACAATGGAAATAAAATTTGTAGCTTTACTTCCTTTGTTTCCTTCTGTTTTATTTTCCGAGCATTTTATTTCTTTTACTTAAACTCTCAAAACATAAATGTTAATTAAATTTCATTATTTCTGCTTCATGTGCTGTCACATTAAATTCGTGGAATTATATTGTTATTTGTTCTTTGGTTCGGCTCTCCAGCCTATAAACAAACTGAAGTACTTGGAATTATCATTAATGTCAAATTTTGCATATTCTAATTGCTCTATGGCTAAACTTTGTATTTCTTGTATTCCTTTCTGGTGTAACTAATGGAATATCTCTGGTTGCAGGAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAGGTGCTAGTCTTACATCAAACATTTTCTACCCCAGGCCCCATTCCTTGCATCTTTTCCTGATCTTAGTAAGTGTACAGGATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</genome_strand>
        <mrna_strand>ACCGCTCTCTCTTCAATTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG.............................................................................GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U316159" ref_strand="+" ref_description="SGN-U316159        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5014749-5016599 REVERSE | Aliases: T5E21.12, T5E21_12(evalue: 7e-85, score=310) genbank/nr: hypothetical(evalue: 3e-91, score=338)">
      <seq>ttagggtttatgaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtggcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtttcgttggaggcagcaatatcggcgagagtatccagaaagttttctgaagaagtctgataccaggggaaaaggtgattatcaaattgattataaaccagctcctcgaatctcagaagcagataagactaatgatcaaaggtcattacagcgagcactagacaagagactctatcttctagtccatggtaccacacaaggtagtggaaagcctgtctggcatttccctgaaaaagtttatgagtctgaagagaatttgcgcaagtgtgctgagtctgccttagaatctttcattggagatctttcacatacatattttgttggaaatgcccctatgggtcatatggtcatgcaacccactgaagacaagaaaatcccttcaatcaagcgcttcttcttcaaatcccaagttattgcagccaacaaatttgatattaggaaatgtgatgattttgtctgggtgaccaaagatgaactgttggaatactttcccgagcaagctgaattcctgaacaagatgatcatcagctgacgttagtttctgctcaaacttcaggcttcgtaggatagcggaaatagttttgatctgaaaaatccatttcttcccgcaaatgcaatgggcttggactgctggagactgatttttatgtctcgacagtctgactagcatgccattcatcaagtcctgtagaattttgaacataggatacctaaattatgatagccttctgcctcagctatcaccaatcctctttgtgagaagctatgctaaaaactctgaaatagtcatgaattttagtatgaatatgcttttgtagatgcacgatttcatctcgcgtcataaaataaacaaaacaaattacatgttgcagccttaacgagttgcgagctttgtttcatagctgcattgtgcatagagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45823" stop="42491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45523" g_stop="45363" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44819" g_stop="44754" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="227" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44335" g_stop="44261" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="302" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.620" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43811" g_stop="43688" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="426" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43601" g_stop="43479" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="549" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43325" g_stop="42803" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="1072" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1079" polyA_stop="1090"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U316159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1072</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45523" e_stop="45363"/>
          <exon e_start="44819" e_stop="44754"/>
          <exon e_start="44335" e_stop="44261"/>
          <exon e_start="43811" e_stop="43688"/>
          <exon e_start="43601" e_stop="43479"/>
          <exon e_start="43325" e_stop="42803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGTTGAGAATAATGAGGTTATAGAATGGGTTAGAAGGAGAAAATGAGAATAAAAAAGAGCAAAGGTTCATGAACAAGAGTTGGCGAATGACAATGTAGATGATTGTTTAACGTAATTGGTGTTTAGTTGATTGCAGTAATTTTATGATTAATTTCTTTTATAGGTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAGGTACATTGATGTTGCATTTTTTGAATTACACCTTGCCATTGAATACCTTTCCTTGTGAATTATGTATCTTCATTTATGATGAAATATTAACTAATGAATGGTATGAAGAGTGTGCATAGGATGTATGAAATAAGTTTAAACATAATAGACCAGTGAAATTGATTTAGGAGCTGAATAGCACAAAGAGAGCATAAAAGTCGAAAAGTGATGAAGATTTTCTGAGCGTTTTTCTTTACTCTAGAAATAGAGTTTGTCTAAATTGCTTGTGTAGTATTATTGCCTTTTCAAGCATGTGTTCTTCCTTATTAGCCATTAAATATGTGCATGGTTCTTCTTGAACATGCTATCACATACTGTTCTGTCTAGTGTCAAATGCCACATGGTCAGTGACTCGGTTACATCTATATGTTACATGCAGGGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAGGTACCAAAGCTTGGACTTCTAACTTTTGTCAAATATTATACAAGAATTTGAATATGGACATTGCACTAGAAGATATTTTTCTTTCAAGAGTTGCTTTACTAAATTCAGCAGACTCGTATTTCCTGACAATAGATGATTATTGACTTCTAATTGTTTACCATAACTAAATTTTTGATGTTGAAATGCCTTAATATTGTCTCGAAGTAATTGATGTGTTAGTTACATGAGATTTTTCAATTGCGCATTGTGTAAGTACTTAAAATTAGGAATGCAGCGCTACTGTTTTTTTTTTTACCTTTTATTTGCCTTCTTCACCCTCTCTACCCCACAAAATAAAGCTTGCGTCTTTTTTTTCAACTCATCACTTGGTCAAAATTTGCTAAAAGGTGCTAACCCTACACAAAACCTTTTCATGTTACTAATTATGAGATTTTATTGATATGCATAAGGTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAGGTAAATAGTACTTATCAGTCCATTTCTATGCTGATTTCAGTAATTTGGGTTAGGAAAATGAAAATATAAGTTGCAACTATTTGCAGTGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAGGTATGTACATTTTAATTATTGAAAGTATTGAAGAAAAAGAGAGTAAAGAAATTCTCTCATCCCACGGTGAGTGAGGGACGGAAGGAGGGAAATTTCCTGATAGCTTCTGCAAATTTTTGTGCTTCTTATATATTCTATATTTTATTGTGGCAGCGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</genome_strand>
        <mrna_strand>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG......................................................................................TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG.........................................................................................................................................................CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335513" ref_strand="+" ref_description="SGN-U335513        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5014749-5016599 REVERSE | Aliases: T5E21.12, T5E21_12(evalue: 3e-07, score=52.8) genbank/nr: hypothetical(evalue: 7e-09, score=64.3)">
      <seq>gaaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatgaagtaaatctacaaaagaaaatagtttcttttgtccaaaattttgcagtggtttctaatgcttaggagataatgtgtaatgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45812" stop="44680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45512" g_stop="44980" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U335513" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45512" e_stop="44980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</genome_strand>
        <mrna_strand>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGAAGTAAATCTACAAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U335512" ref_strand="+" ref_description="SGN-U335512        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:5014749-5016599 REVERSE | Aliases: T5E21.12, T5E21_12(evalue: 3e-07, score=52.8) genbank/nr: hypothetical(evalue: 7e-09, score=64.3)">
      <seq>aaaatgcagaggtgctgttcatctgcgataggtaaacgatggttttcttcattcaacaatgataaaattgtcgcttcagtgctctttgaaagattaccggtagtggtacccaaaatcgatcctactgtatatgcttttcaagaattttcgtaagtttttcttttttttctgttcaattgttgcacgaaatcgatcctttttgtaatccaattacaatgatttacttttagagcgataaattctggttcatataatagaatgatcaaaacatttactagtgttgattttttttttcgctttctaaaaactgtgatggttaattagggattaaggggtactctgatatgtttgcttgcgaaaaatagtactcaaaaacaataattatgcctcaattgcattagtcaggtcaaattatgaatcttcactattttgtaagtttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="45811" stop="44764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45511" g_stop="45064" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U335512" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45511" e_stop="45064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATT-T---T--A-TGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGA</genome_strand>
        <mrna_strand>AAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTCGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTCTTTTTTTTCTGTTCAATTGTTGCACGAAATC-----G------ATCCTTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAAATTCTGGTTCATATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTCTAAAAACTGTGATGGTTAATTAGGGATTAAGGGGTACTCTGATATGTTTGCTTGCGAAAAATAGTACTCAAAAACAATAATTATGCCTCAATTGCATTAGTCAGGTCAAATTATGAATCTTCACTATTTTGTAAGTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U326781" ref_strand="+" ref_description="SGN-U326781        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G46730.1 | Symbol: None | disease resistance protein (CC-NBS class), putative, domain signature CC-NBS exists, suggestive of a disease resistance protein. | chr3:17224054-17226597 REVERSE | Aliases: T6H20.240 (evalue: 4e-55, score=211) genbank/nr: disease(evalue: 2e-55, score=218)">
      <seq>tgtgttttcagccttgaccactcgatcttctggaaacataccaaagtagagaaaacactgcttgagctcaattgacaaatcattgtagcttagtgatagtatgttggagatttcaacagatttatcttctttaatgctcttccaaaggtgatctttcaccttttgccattcatctagatcctttttatgcgaaagtagtccgctcaatacaacaattgcaagaggtaaacctctacacttttccaccatatccttagctagactttccatttctgcaaccattgctcgaacatcaagtagtttcctaagaaagagatcccaactttcttcttgacttaggaaacgaagtttatgaacaaaacctctgtcggctgctctttcagcgatatcctctttgcgcgtggtaataatgactctgctgccattcttgtcatccgggaatgctcttttcaaactttcccatgcttctctttgccatatatcatcaaccactacaaggtatttgcgttctttcagtagatcacgaaggtgattttctagatctctttcatccatcttttccaacaatcctagagttcccatggtgcaaccttggatggattttatgatagtcttaagaagatccattgtgttgtactcttgagaaacacatatccaagcacgtgtaggccaggtattgactatacgaggacttctgtagaggtttcttgcaagagtggtcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="48813" stop="47489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48513" g_stop="47789" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U326781" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48513" e_stop="47789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCGTGTGTAGGGAAGCGAGAGGATATATTAGGATTTTTGTAGAGGTTTCTTGCAAGAGTGGTCTTGC</genome_strand>
        <mrna_strand>TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTTTCCCATGCTTCTCTTTGCCATATATCATCAACCACTACAAGGTATTTGCGTTCTTTCAGTAGATCACGAAGGTGATTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCAACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCACGTGTAGGCCAGGTATTGACTATACGAGGACTTCTGTAGAGGTTTCTTGCAAGAGTGGTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U327528" ref_strand="+" ref_description="SGN-U327528        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gtcgccgataatcagtggattttcacctatttgagggtgtactttgaggaaggtgaatgctcaaattcgtcattctttttagtggaaaaatacatctcgagatgatggaaattgaaattgcgtccctttaccactacgtataagctggtcaagctgattttgagttgttttcggtacaacttttagcttgaatattctgagtgtcctcctttctctcgactgagtagcttttactctacaagaaattcatctgctagagtagttctgcaaaagaaaagcaatcaaaataatggatgatcgggttgttcttgacaagggtggaacaaggaagttgcctcagtggatgtttgctacatctgctgctgatcaagtaaaggaaaaagccaaaactgataaagtagacaataataatactacagagaaggagattgtcactcagaaacagaaaaatagaaggattaaggataaaaaggaaacattcactgaggagtcgtccactcagcttccaatatgccaaacaacaaaaagaagcagaagaaaattaaacctaccaaatgattattgtaatgatgaaagcacttcaatggggagtgaatgtgacagcaagcaagcaagtggtgatggagaggttcctatgttgaggagacagaaacagaaaacgaagaattccaagactgagagagttgctgagatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="60716" stop="56719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60416" g_stop="60382" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60381" i_stop="57680" i_length="2702">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57679" g_stop="57019" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="696" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U327528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60416" e_stop="60382"/>
          <exon e_start="57679" e_stop="57019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAGGTAAGAATCGAACCCCATAGCTGTGAATTTAGCTTATAATCTTCATATATATGAAGTACAGTTGAATTAGGGATGAAATTGTGACGGGATAACTTTGGTAATTGTGGGTTTTCATTTCAAGCATATTTAATTGTATTTTGTTGTCCGATTGATATGCAAATCGAGTGTAAAGTTTCTGTTAGCTTATCATACCATTGTCTACTTGTCTGTTTTAAGCCATACGGACACTTTTTGAGTCTCCACACTAGTCATGGAGCATCCACTTAGACTTCTCCATGCAAGTTTCCATGGGGAACGCATTATTGACATCTAGTTCCACTCGATGTACGGAGTCTACCTTGGAGATCCGATTAAATTCGGATGACACACGACAAGGTCCACTTAGAGGTGGCGCTCCCAACAAGATTTTTCTCTATAGCTAGGGCTTGAAGGAGACCTCTGGATAAGGGTGAAACACTCCCACCAGTACACCACAACCCATGTTGGTTATTGACATCTATTTGATAAAGCTACTATCCTTGTTTGACAACTACATTGATTAAAGTCTCCACAATGGTCAAGATGACCATTGGTGAAAATGTTTCAATGTAGTCAAGTGTACCCTTTGCCCACCAACCTAGCCTTGAACCTTGCTACACTTCCATGTCCGCTGTGTTTGATCTTGTAAACCCACCTACAACCCATTGCCTTCTTTCCTGCAGGTAGATTAGCCGAATGCTAAGTTTGGTTAGCATATAAAGTCTAAAATTACCGTGTCATGGTTGGTTGCCATGCAGGATTCATAGCTACTCTCTCATAGTAATTAGGTTCTCTTATCATAAGAAATGTTTTGCATAACCGGCTGGCTATCAGGATCCAGTGAGATGAGGGGAATTTTTCCAGTGTTGGTGAAAAGGGCACTGAGAGATGGAGAAGGTTCTTAGACCTGGTCTTTCAGAAGGGGAAGATAATAGACAAATTCCATCAAATGAGGTGGGGTATTGTGGATCCTACATCCTAGAGTATCTCCTAGGAGCAGGTATGTCTAAGTGGCTACTAGAAGTGGATGGTGGCAAGGTCTTATCAAAGAAGGATGATTGATGAGGTTGATAGGATGATAGACTTTGATCTGCAAGTAAAGGAGCGTATCGGTAGGACTGGCAGTGTGAAGTATCAATCTGTTAGAGTCAAGAGGAGCAGTAACAGAAGGTGGAGTGTTCTTGGTGTGCAATTGACATTCATCTAAAGTATGTAATTCTGTATAACATTGATATCACACATAGCTGTGGTCTTACAAGTATCACACATTTAGACAAACAATTATTCATAGGTTGAGAGCTTCAAAAAAAATATTTCATAGGTTGAGAAAAAGCAACAGGAACATAAAGTGAAACATGACATGACTCAGTAAATTGGCACTTCGCGCAGAGAAAGTATATTATGAAGTTGGGTTTGATGTCTAAATTCTGTGTTGCTTTATGGATTCATTTGACGAATTGAGTAATTTTACTGGGAATTGCTGGACTTGAACTGTGACATTTTTTTTCCTTCACAAAAAACATGATTTTGGAAGTTTTATTGTTAACAGTGAGCATCTATGTTCTATGGATTTTAATTTCTTTTCTCATCCCAAAGAAATCAAAACAAGATATAAGAAAAAGAGAGCAAAACAATAGAAAAAACTCCAACGCAGCTTCAAAACTTTTTTTTTTTTGGTATTCAGTATCTAAGTGACATGTACTTTCTCAACTGACTCTTGTGAAAAACTGATGTGTGACATCTTTTTTCTGTTTTGTTGGTATTTTGTAGTGGTATTTAGTGTCATTTATGTCATTGATGCAATCTTGATATTAATTACTAGCATGAAATGAATGTGACACATCATTTAATTAGACGGAAGATGGATTAAAGAGGAAGCCATCTGGAAGAAGGCCCTATGTCGAAAACATTTAAACAGTTACACTCTTTAGTGTGTGTTCATCGGAACTGGGGGTTAACCATGATGTTTTCCAACTCGATGAGTTTCTCCATATCGAGCAATTAATAGTCTTAATAATCAGATTCAACAGTAACATATTACATAAAACATTATCTTAAATGTGGATAAGCAAGATAACTTACCGCAGACCAATTAATTTATGTTAACACTAGCATTTATGCATAGAATGCCAAAACCAATTCTCTTCAAACCAATTCCACACGCACAAAAAGAAATTAAACACTACTGAAGACATTGACTCTCTTTGGCAGCCCTGAAATAATCAGCAAAGCGGCAGAAACCTGTTTAATGCTTTTACAATCCAACTTCATTTATGCATATGTCTTCAAGTGCTTGTCAAAAATGGATCAATAAAAGACAGCTTCTTTTCCCGTTTTACCCAAATTGTAAGACACTTTTTAACATAATAACTAGTAGTCAATAAAAACGAAAAGATTTATCAATTATTTAAAATAATGATTTAACTATAATGTTCAAGGCATTATAGTTACATCTAATTTTTTTTATAGATTATGTGGGGAAGGTACAATCCTCAAAAATATTGTACATAGTTTTGAAAATTTTATAATTTCTCTTCAAAGTTATATATGTTATTACTACTGATTCTTGTGTGCTTACTGGTACCCGCTTCATAAGGACTTCCTATAATATAAGCCCAAAGTTTGTGGTTGATGCTTAATCATGGGAAAGAGGATTTATTTTCTCCTTTTGTCTACTTTTACAGGGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</genome_strand>
        <mrna_strand>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U329894" ref_strand="+" ref_description="SGN-U329894        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G19950.1 | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) | chr3:6942775-6945199 FORWARD | Aliases: MPN9.20 (evalue: 1e-52, score=203) genbank/nr: gi|11994207|dbj|BAB01310.1| gene_id:MPN9.20~unknown protein [Arabidopsis thaliana](evalue: 8e-51, score=203)">
      <seq>tcgttatcgaggggggtaacgggggtagtggtctccaaatgccggcgaattatggggactatttcattggaccggggtttgagcaattgatccagaatttggcagaaaatgatccaaaccgatatgggactcctccggcgtcgagagcagcggtggaggggctccctaccatcaaagttgatgaggaattgatgcgttctgaactggcacagtgtgctgtttgtaaggatgattttgagatggggtcagatgtgatacagatgccttgtaagcatgtttatcataaggattgtatcataccgtggcttgagttgcacagttcttgcccggtttgtcgctatgagttgccaacggatgagcctgagaatgagaacaggcaaagagacaatgatggggactcgagcggggatggttctgcttctggaagtgggggatcagggagaaggtttactacaatatcattgccatggcctttgggaagctttggagcatcatctagccagggatgatccgagtctcgtgggcagcggaacagggagtctaattaggtggtatccttgcttgcaggttgtatcatggatgacaaagttggaggagttgttgggtagataattagaaaatgctacaaaggtaaaggattaggtttcatctcttaaaacatagatacagggtctacacaaaccccagatagtattgcaagatgtttgtctgaatgttttgcatcagatgtccaaagttttcatttatgcttcatcaatcgcgaattttgcggattgttttagtccttgtgcagttgatctggaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="63236" stop="68277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63536" g_stop="64083" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64084" i_stop="67721" i_length="3638">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67722" g_stop="67974" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="801" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="803" polyA_stop="816"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-U329894" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63536" e_stop="64083"/>
          <exon e_start="67722" e_stop="67974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAGGTAGAGATATACAAACCATAATCGTCTTAATTTGATTGTTCAATTCATTTGATTCAAATTTATACACGTGACTTGCTGATCGAAGCTAAAATTGTACTTGTTCATCGATTTTTGTGACTATCTGTTATTTCGTGTAGTTTGTTTGTAGTATTACTTTGTTGTAGTACTATTATGTTCCTACTTGTTGTTTTGTTACTTTGTATTGTTGATTGTACTTTCAGTATTTGTTATCGTACTATTTTGACTTGAGCCGGGGGTCTATCTGAAACGGCCTCTTTATCTCATCTCTAGGTAGATATAAGGTTCCGTACACTCTAACGTCCCATACCCCACTGTGGGATTACACTGGATATGTTGTAGTTGTTGTACTCTTAGTTGCGCGGACTCTTCACTTTTGATGTCGCACCTGTCTCGGATTCTTCAAAATACACTACTTTTGACGAATTCGACATGCACCTGTTCGCATTTTTGAAGAGTCCATGCAACATAGGTTGTACTTGACGTCAGGAGTTGATATACCCAAAGTTCTGGTAAATATAAGGAATTCTAGACTAGGAAATGGGATTAACTGTGGTTATGCATTTTACTAGGTAGTTGGAATGTCCTTAACTGTGTTCATGGGACATCTTAATCAATCAGCTGTGCCTAATTCCGAAACTGTTGAGCTCAGTTGTATTCGCTGGCTCGATTTAGGTCCACTTCTACGTCCATGTTTGATGTTCAGTGTCTAGCTGGTCCTTACGTGAACCCGATGAGGTACTTGCTATAAAGGGACCTGAAGACTGATTCATATTTCAAGTTCATTGGAGATGTGTTTAACAACTGTTCGATTTCTTCAGTTTTGTATTTTCACAAGTCCTCGGACATGTGCGACCATGCTGATTAATATAAACATTTAAAAATGATTTCAATAAGGTTACAATATGTATGTGATGAGTTGCACAAAATTAGAATGGGAAAATGATCGCACATTTTTTATGGGCATTCTGCTTAGATTGTAATTCCCACTTAATCAACTTAAATAATAGAATTATAATGATAGCCTGTTCATTCAGTGGAAGATCTAGGATTTGAAGATGGTGGGTGCTCATTTTCTTTAAGATAAAGTTGCTAACCTAGAAGGGTTACTTTCTGGAAGCTTTGTAATGTTTTTATAGTTTAGTTAGTTAATGAAAGACAAATACATAATTGGAAACAAGAAAGAAAAAATGAGCAAAAAAGAATCAGCAGCTAAAGTATACGTATGAAGTAGTTCTGTTTCCTTTTTTCCACCAAAAAAAGATTAATAGTTAGCACCTACTAGGATTCGAACCCTCAACAGAACCCATCAGTGCACTCTTATTTCAACTCTAGAACCAAAGCACCCATAAGAACTTTTGGTTTTTGTCTGCTCGCGAGTAGATTATATTAGTTTTACAGATTTTCTTTATATATACACAAAATTCTCATCGGGGGCAATGGGGGCTCGAGCACCGATAAACTACACGTGTAGTGGGTGTGTCCCTGTGTTCATTTGCTTTTGAAGATAGATTAACGGAATCTCTTTTCTTTCTTTCAAATTTGCACTTTATTTAAAGAGTATATTAAGGATAGGAAGAGACATTATTATCATTTTTAATTATAAAATATCTTTTTCCTAGTTTGCCACGTCCCAAAAAAAAATCTTTCCTTGCTTTATGTTACATTAATTGAATACATTTACCATCCTCTTTAGTCGTTAATATATAACCCATAGATACACTTGCACACACGTTCCACAATATATAATTTAACTCTCATTTAATTATGCAAAATGTTCATATTTAATGGAGTAGCCTTAATTGTGAAAATATAATGTGTTCACATTTTGTACAAGAACATTATTGCAATAGTTTTTAAGGGGTGAAATAATCTTTCAACTTTTAACTTTGGGGCTTCCACTTATGGAATAGTGTGGTGATTAATCCCATATATGCTTGTATTCTATGCATAGACCAACTGATAAAGTTATTAGCATATGTAGATATGTAGCACAACCTAAGTTGCTTTGACTCTTCGCTTTCGGTGCCAAAACCGTGTCGAGACGACATGGGCGTGGGTCTGGGCTGGGATAAGTACCTGATCTGGTCAACTAGGTTTGGGTACTTTGACCAAATTCGAGGGAAATTTTTTGGATAGATCCAATGATTTCTGTCCCTTTTCTTTTATCTCATTCCAAGATTCTCCTCTTGATCATTATTCACTCCTTGAGTTTTCCACATAATATCTCATTATTTTGGTTTTATAACTCTTATGTTTAGCCAAATCCCCGCACCCTGTATCCACACATGGATCCGTATCCCCGAACTTAAAAATTTAGGTCATAGAGGATCTGATCTCTAGATCTGCACCCTTATCGGATACCCGCACCCGAGCGACTTAGAGTGCAACTACTATTAATTGCTGGACAAACTTTCTCACTCTACATGTGTGATTTTGAACTGCATGTGTAGTTGTTAAATGTCTTTGCAGATAACGTTCAGTGGCAGAACTAGTATTTAGTTTATGCTTGTATGTTGATAACTGTGCGACTACAAGGGCATTTTACAACATAACACATGTTCTATTTGTATGAAATTATTTGCATTTGTCTTTATATGTACATGCAAATACTTAGCCATCACAATGTGTATGATGCCATTTCTGGAAACAAGGGACCAAATCTATAAAATTGGTCAAATGTTGGAAAGAGGAGGTTATCCCGGTATTTTTATCCGTGGAAAGCCCAGAAAAGTGACCGACTAGAGCAGGGCCCTATTGATAAATGTAAGGAAGTGTTTATGAGCCCTAGCAAAAGCCGTAGCCCTTTAATTGTGTCGGGGAATCGGCCTTCTTTAGTCAAAGGATCTAATTCCCATGTATTTCCAAGGTTATTGATGGTAGAGTTATTGCAACTTATGCCTTTGTTGAGCTCTTAGATGCGAGATTGTACATCTTGTCAGTCTTCTTCATTTTGTGCACTTTGCTGGTTTTTGGTTTGTGATGGCTTTTAATGATGTTTCACCATTGAATTCTAAAGTTTTATATGGGTCAAATAGGCAGGTTGGACTAAATTTGGGTGGGTTAAGCAGGTTGGATCAGTAAGCAAATTGGTCATAGCCAATTTATCATATCTAATCTCCCTTTCAATTTTAAGGATTTCATGAATGATGTCACTCAATTGCTCTGCTGATCTTCCTTCTGGATGCTCTTGAGAAGTAGTTGAAAATGTTGCATTAGATTGTAAATAGTCCAAAAGTAGTTCCACTTCTTGCTAGATTCCTTGGTCCTTGGGGTGAAATAGGACACACTTTTGCCTTTTGCTCCTTCTTGATGTATGTATCTCACACCTACATAGTACTGTAAACATCTATGTAGTATCTTTTCTGATGAAAAGAAATGGTACTACTTCTTGATCTTTCTCTTGTAAAGTAATAATTAGGTAATATTTCATGCTCTTTATTGGTACTTCTGTTTGATGTTCTATGTTATGTTGATCATACACTTCAATTGTCAACTCTTTCCTACATTCATTGCTGACATCCAGAGATGTTACAAATTTGATTTTGATTTCGTAGATACAAACATGGTATACCACTTTGAAATGTATTTTGATCATTAATGATTTCTCTGTTTTACAGGTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</genome_strand>
        <mrna_strand>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U319029" ref_strand="+" ref_description="SGN-U319029        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | TCP family transcription factor, putative, similar to PCF2 ((GI:2580440) Oryza sativa) | chr5:7842974-7844278 FORWARD | Aliases: MKD15.14, MKD15_14(evalue: 2e-35, score=145) genbank/nr: unknown(evalue: 2e-39, score=165)">
      <seq>actactatttttacatactatttgtttttgttttctactttgttaggctcattctcttgctttactttacaagagtggtgaatctttgattttgttaagtgttttgacatatttgttgtattggggctctgttttttttctcctatgaatagagctttttctattacttgaaacttcaactgaagctgctttctttgtttggggttttgtttaattgagctctgttttccagagcttggtgaatttgttgtttttttctttgttggggtttgctcaattcagctcataaatcccatattactactctatttggacttgattttctattatttgttgtttttttctttgttggggtttgctcaattcagctcacaattcccgtattagtactctattttggatttgattttcgattattgttgggttttgtttgttgataaatcctagtaattttccaccactaccgtttttgctgctagtgttttgagcttctaatgtcgacgtctgcagagggaaatggagctataattgatcctcagaggcaacaacaacaggcgcctactggggttggtacaaatggtgctttaacagtgaaaaaaccgccggtaaaagaccggcatagtaaggttgatggtagaggaagacgtataaggatgccaattgtatgtgcggcaagagtttttcagcttactcgtgaattgggtcataaatccgatggacaaactattgaatggctgcttcgtcaagctgagccttcaattatagctgctactggtactggtactattcctgctagtttctcgactgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="78407" stop="79832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78789" g_stop="79532" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="811" r_length="710" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-U319029" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78789" e_stop="79532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTG-TTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC</genome_strand>
        <mrna_strand>TTTTGACATATTTGTTGTATTGGGGCTCTG------TTTTTTTT-CTCCTATGAATAGAGCTTTTTCTATTACTTGAAACTTCAACTGAA---GC-----TG-CTT-T----------------C-TTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTT-TTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTACTACTCTATTTGGACTTGATTTTCTATTATTTGTTGTTTTTTTCTTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U322624" ref_strand="+" ref_description="SGN-U322624        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | TCP family transcription factor, putative, similar to PCF1 (GI:2580438) and PCF2 ((GI:2580440) Oryza sativa) ; auxin-induced basic helix-loop-helix transcription factor, Gossypium hirsutum, EMBL:AF165924 | chr5:2680745-2681814 FORWARD | Aliases: F8L15.60, F8L15_60(evalue: 9e-07, score=48.5) genbank/nr: gi|50916108|ref|XP_468518.1| transcription factor PCF3-like [Oryza sativa (japonica cultivar-group)] >gi|48716463|dbj|BAD23070.1| transcription factor PCF3-like [Oryza sativa (japonica cultivar-group)] (evalue: 2e-06, score=53.9)">
      <seq>tactgctgtggtcccacagctggttttgggctgttccagctaggcntgatttggtcaaatttggagcttngcggcggcaccgccacctgaaatgatggtgccgacctccgcggctgcagcagctgcagccgcggcagcgttaagttcgcagagttctagattctttcagcagcagatgggtgaggcttcagctgctagagttgggaattacttaccaatgactcaagggcatctcaatttgctagcttctctatcaggtcctccacagccctcttccgggagaagagacgacgacggacgttgaagatatgattattgttattgttattgttatcgttattgttgttaatatatcgtataaatgtgttttaatgttcttgtttgtgttagatgagaaatttgttgctaggttctagtgagtgagaaatgaactaggggcttgttcaatttcatgaattattgctaggattaggtttgtttgctatatctcatttgtcaagagtttacgttcaccgagttttggtgttgtaagctgtgggacgataacacgaaacacaagcatcaggggaagttgttgcttgtgatgatgaatttggtggggtttgttctgttgtttgcagacctcacaataagctgctttgatcacattgtaacaagatataataggggatcagtgtggactatgaaaacctgtagttccacatgaatgttttgtaaggaaaccatggcggtttccgttgaattcaattctgtaatttgttgaaactatatcagttgtgagcttaaactttcctactcaaaagattgctatggacttcaatttattactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="79410" stop="80844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79710" g_stop="80541" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="831" polyA_stop="849"/>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-U322624" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79710" e_stop="80541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGCTGTGGGTCCCACAGCTGGGTTTTGGGCTGTTCCAGCTAGGCCTGATTTTGGTCAAATTTGGAGCTTTGCGGCGGCACCGCCACCTGAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT</genome_strand>
        <mrna_strand>TACTGCTGT-GGTCCCACAGCT-GGTTTTGGGCTGTTCCAGCTAGGCNTGA-TTTGGTCAAATTTGGAGCTTNGCGGCGGCACCGCCACCTGAAATGATGGTGCCGACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U338058" ref_strand="+" ref_description="SGN-U338058        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:3758859-3760848 FORWARD | Aliases: T22P22.70, T22P22_70(evalue: 2e-68, score=173) genbank/nr: gi|15239148|ref|NP_196729.1| expressed protein [Arabidopsis thaliana] gi|11358224|pir||T48527 hypothetical protein T22P22.70 - Arabidopsis thaliana gi|7573382|emb|CAB87686.1| putative protein [Arabidopsis thaliana] gi|17065570|gb|AAL32939.1| putative protein [Arabidopsis thaliana] gi|17380652|gb|AAL36156.1| unknown protein [Arabidopsis thaliana] gi|20148563|gb|AAM10172.1| putative protein [Arabidopsis thaliana] gi|21436275|gb|AAM51276.1| unknown protein [Arabidopsis thaliana] gi|21593584|gb|AAM65551.1| unknown [Arabidopsis thaliana](evalue: 2e-66, score=173)">
      <seq>taagattttagaacgtagaaaaccacaattttcaaaagctaatcccaaattccaaaaattttccgatcggagatttttttttccgatcagaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgaggttgacaaaatccctggtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttgctttttgtttctgatgaaatatttacgcaaccagtattccactgcaacaacatctctggatttgtagatccggttgttccagataatgaaaacagtgccttgtactccacacatacattcaagattttgttcaggatggtggttgtgggactttcgtgccattatttttcaacttaatcgcctctgtgagacgagctcagcaacagtctggggtacagccacgggcagaccctctccaagctgcacaaactccagttgatgagatgattagacatgcttatgtcgatcccaatgatccaacgaaaatcttcttgcagcagcctactccagagtcgcacttaggcgtcgntcataccaatcacaacctgcttaaactcaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="83924" stop="86997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84224" g_stop="84439" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84440" i_stop="85007" i_length="568">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85008" g_stop="85110" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="318" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85111" i_stop="85853" i_length="743">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85854" g_stop="85925" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="390" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85926" i_stop="86272" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="86273" g_stop="86478" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="595" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="86479" i_stop="86591" i_length="113">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86592" g_stop="86697" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="699" r_length="104" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-U338058" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84224" e_stop="84439"/>
          <exon e_start="85008" e_stop="85110"/>
          <exon e_start="85854" e_stop="85925"/>
          <exon e_start="86273" e_stop="86478"/>
          <exon e_start="86592" e_stop="86697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCGGTAAGCTGAATTACTATTTTCGAATATACTCAATGTTGTCTAAGGTGCACTTTAAGCGCACTTAAGGGTGAAGCGAGGTGCAAAGTATGTTGAGCTTAGCTGGCGCGTTAGTGCCGTCATCAAGGCTCTAGCACCTTGTCAATGACTCTAAATGCTAAATTCTCTCCTTATATTTGTTATTATAATCATTAGTCTAGGACTACACATACATATTTGTGATTTTCTCCACCACATTTTATCTATGCTTATAGCCCCAACGAACCTTAGAGACTTTTTGCTCTTTTTGCTTTCGAAAACACTGGATTATGTGCGTGCAACATTAGATAACCGATTATGGCTATGTTCAGGTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGCGTATGTCAACGTTGCTTTCTCCTTTTTACAACGACATTAGTTAACGATCCTTTCCCCCCCTCAATATGCTAACTGGTTTTACTGAATTCTTATGGTGTTTGTTGATTTTGCAGTTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</genome_strand>
        <mrna_strand>TAAGATTTTAGAACGTAG-AAAACCACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG...........................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTC-AGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC.................................................................................................................TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGC-ACTTAGGCGTCGNTCATACCAATCACAACCTGCTT-AAACTCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U324667" ref_strand="+" ref_description="SGN-U324667        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted proteins, Arabidopsis thaliana | chr5:3758859-3760848 FORWARD | Aliases: T22P22.70, T22P22_70(evalue: 2e-23, score=106) genbank/nr: gi|15239148|ref|NP_196729.1| expressed protein [Arabidopsis thaliana] gi|11358224|pir||T48527 hypothetical protein T22P22.70 - Arabidopsis thaliana gi|7573382|emb|CAB87686.1| putative protein [Arabidopsis thaliana] gi|17065570|gb|AAL32939.1| putative protein [Arabidopsis thaliana] gi|17380652|gb|AAL36156.1| unknown protein [Arabidopsis thaliana] gi|20148563|gb|AAM10172.1| putative protein [Arabidopsis thaliana] gi|21436275|gb|AAM51276.1| unknown protein [Arabidopsis thaliana] gi|21593584|gb|AAM65551.1| unknown [Arabidopsis thaliana](evalue: 1e-21, score=106)">
      <seq>caaaaattttccgatcggagattttctattccgatcagaaaacagaaaataaaaatggcagtgaatcctcaattatttcctaatggaatgccaattcctttcctcaatgaattgttcgtcctatctagacatggtgttgagtttgtggtcgacaaaatccctggtgtaggaaaaacaagaacaagaggtacaatctacttgtcgaatattcggatggtctttgttgcaaagatgcctgtggatttcattgcttttgatatgcctttggtatgttatacttctatgtctttttaccgtcctccgattttgcaaacaccacatgctaaccaactctattcactcatgactggtatagtttttctgtggatcagagaagaaaatcgcgaaaactctcttttgttactcttactattatattaacaagttactatggcgctccttcagtatctgctgtaactagaccaacatatgcataatgtgcaattcagaatggcgattccaagtataacgattagcgatatttcttttgttgcttctttttgaggctgaacaaaactttgtgtatgatatgcttctgaatcctgtagttttgttctctctttgaaatacattttagaaagtcgtattttactatgtgcaattcagaatggcgcgtagtagagcagatatatcactttggtcaaatacgatccttctcctatgaaactgtactgtttgtttctaaagctttgacatgttaattgaatggtattatgacatgatttatatctgatttgtatattaagcacaacattgctagatacaacatctgctaggaagcatgttatggcatatattgttcggatatttgttaagatgcatgacatgaattcgtgttcatctgttctatgtttttgttcagagaaataatctggtaagttggtgacttttgctgaacaagaagttacaaaactgagaaatgtaagctacatttgctttgacaaagtttatttacctttttttcttctgcagctttttgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="+" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="83977" stop="86165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84277" g_stop="84439" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84440" i_stop="85007" i_length="568">
            <donor d_prob="0.989" d_score="0.96"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85008" g_stop="85865" g_length="858"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="1023" r_length="859" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="+" ref_id="SGN-U324667" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>1021</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84277" e_stop="84439"/>
          <exon e_start="85008" e_stop="85865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAA-ACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGGGTGAGTTCATCTTATTTAGCGAATTCAGAATTTTCATTTAGGGATTCGTAAAAAAAAATGCTTAATTTTTGAACTTGAAACCTCGATATGAAATTTGAGCCCCTCAATATTCAAAATTTATTGTAATATGTAAGAATTATCTTATCTATATGGTGTAATTTGTGAATCCTCTCTATTCGTGTATATGAAGAAAAAAAAAACTCTGAAAGTATTTATGTATAATTTTATGCAAATATTATGAGAAGTGGAGGTGACAGCAGGGGCGGAGCTAATTAGGTTCCTTTTGATAGAAAATTATACTGTTTATATATGGTTAAAATTATTTTTTGTGCCCATATCTCTATGTATATATATATATTAGATGTTGAACCCCTCAATGAAAATATTGGCTTCGATGAGGTTAGTTGGAGGATGAGGACGATAAAATCGATGTGAAGTGTCAAATATGGTTAAATGTATTTGCTTTACTTTTTTGAGTTCCTTGTTTTTCAAACACATGATTCTTGCATTGCCTTCATTGTTTTTTATTAGTTCATGAAGCTGTGTTAATGAGACTGTTTGTTATCAGTGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGAC-TTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</genome_strand>
        <mrna_strand>CAAAAATTTTCCGATCGGAGATTTTCTATTCCGATCAGAAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGTGGTCGACAAAATCCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTTGCTGAACAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTTCTTCTGCAGCTTTTTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-5KZ4IH/lycopersicum_combined_unigene_seqs" ref_id="SGN-U315915" ref_strand="+" ref_description="SGN-U315915        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutamate-1-semialdehyde 2,1-aminomutase 1 (GSA 1) / glutamate-1-semialdehyde aminotransferase 1 (GSA-AT 1), identical to GSA 1 (SP:P42799) | chr5:25469103-25471067 FORWARD | Aliases: MBK5.3, MBK5_3(evalue: 0, score=734) genbank/nr: gi|2492862|sp|Q40147|GSA_LYCES Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) gi|7489005|pir||T07034 glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8) - tomato gi|642911|gb|AAA81881.1| glutamate 1-semialdehyde 2,1-aminomutase(evalue: 0, score=899)">
      <seq>gacaacaaaaaaattagaagaaaacccattgcagcactaattcaagaatactcagagagagaagaggaagagttggtaacaatggctgctgtaaatggtgtaggactttcatggccatcaaaattgaccaaaaatcaaacacccaaatggggtttttctccatctcaccgtcgatgcaacccatcttcttcttcttcttctgcaaccattagaatgacagcctcagttgatgaaaagaagaaaacgttcacacttgagaagtctgaagaagctttcagcaaagccaaggagttgatgccaggaggtgtaaattcccctgtccgtgctttcaagtcagttggcggacaacctatcattattgactccgtgaagggctctcgtatgcgggacatagatggtaacgagtacattgactatgtcggatcatggggaccagctataattggtcatgcggatgatgaggtgctagcagcattggctgaaacaatgaagaaaggaacgagtttcggtgctccatgtctccttgaaaatacactggcagagatggttatttcagctgttccaagcatagaaatggttcgatttgtcaactctggtacagaagcatgtatgggagtactacggctggctcgtgctttcacttgccgtcctaagatcatcaaatttgagggttgttaccatggtcatgctgatccatttcttgttaaagcgggcagtggcgttgccaccctcggtcttcctgactctccgggagttccaaaggcagctactatcgatactctgaccgcaccttacaatgacatttctgctgttgagagcctctttgaggagcacaaaggagaaatagccgctgtaattctcgagcctgtagtcggaaatgctggcttcatcccacctaagctagaatttcttgctgccattcgcaagatcaccaaagagaatgatgcacttcttattttcgacgaagtcatgactggatttagattggcatatggcggtgctcaagagtattttggaataactccagatttgacaacactcgggaagattattggcggtggcttgccagtaggtgcttacggaggaagacgggatataatggagatggtagcacctgcaggaccaatgtatcaagctggcaccctaagtggaaacccattggccatgactgctggaattcacacgcttaagcggttacaaggacagggaacatacgaacacttggacaagatcaccgcggaacttacacaaggaatcttggatgctggaaagaagaccggtcatgcaatgtgtggtggctccataagggggatgtttggcttcttcttcgcggatggtcccatctataacttttcggatgcaaagaagagtgatacagaaaaatttggcagattctatagagggatgctggaggaaggtgtttactttgcaccatcacagtttgaggctggatttactagcttagcacacactccagaggatattcaaaggactgtagctgcagctgaaaaagttttgaagcaaatttaaccactatatttctttttgtatgctagatggagagattttcctttttaagtttttgttctgttgaataaaaggtgattttgtaacatattgtttattcagaaacatgctgcattattttacctcctgtatttaaagcattttttggtcacttgagtacatctgtactatatattaacaagaggagtcttggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0127E11-XTXTU/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0127E11.1" temp_strand="-" temp_description="C04HBa0127E11.1  htgs_phase:2 submitted_to_sgn_as:gi|15987772|gb|AF411807.1| Lycopersicon esculentum BAC clone Clemson_Id 127E11, complete sequence">
        <position start="91160" stop="86700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90861" g_stop="90574" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89207" g_stop="89034" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="462" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88261" g_stop="87000" g_length="1262"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="1724" r_length="1262" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0127E11.1" gen_strand="-" ref_id="SGN-U315915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0127E11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90861" e_stop="90574"/>
          <exon e_start="89207" e_stop="89034"/>
          <exon e_start="88261" e_stop="87000"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAGGTAATCAAAATTCAGTTTTTTTTTTTTTTTTTGGCTTCATGTTCATACAATTCAATTTGGTGATGTTATTCAGTACTCATTAGACAAAAGTAAGGTTCAAAAATCCATAGACTCAAAATCCTGGATCCACCTCATCTTCTAGATAAGGTGGTGATAATATTCAAGATTATGGATATTGTTCAGTGTTTGTTCTTTGATTTGAAGTGTATTGGTCAAGATTTGATTTTTCATGCTAATATTGCTGGTAAAATTGGAGGGGGTTGTCATGTGACCAGGAGGTTATGGGTTCGAGCTGTAGGTACAGCCTTTTGCAGAAATGCAGGTTAAGGCTGCATACTATAGACCCTTGTGGTCCGGCCCTTCCACCCCAAGCATAGTGGGAGCTTAAAATTGCTAGCTTTAAGATATTTGGGTTGGATGAAGAGAAGAAAAAGGATATGTTGATTTGATAAAGTTGGTGTTAGGTGTACAAACAAAGTCTTAGGCTCTGAGCTGAAAAGAAAGTAAAAGACTTTGTAATGATATTGTTAATGGTGTGAGGCTTTTTTTGGAGAAAACCGTGTGGATTTGGTTTTAGTCCAAAGTGGACAATACTGCACCATGTTTAAAGTATCTTTGGGTTGTTTTAGCCTAACAGTTGGTTCACCTGCCATTTTGGCATCTGCTGATGAATTGATGTATAACCAGTGCTCTCTGATCTAACATACAGTCTAGTTGTCCTCCCATATAAGTTAGTATAGCTTAACTGTGATCTATTTGTGACTTTATGAGAACCTTGAGTATGTTTTAGATGTTGGTTGTGCTCAAAAGGCGTAATTTTTATCACTGTTTAAATTTCATGAATATCCGAGGTGGTTTGACTACAAAGAGGAGATATATTGATGGATCTGATAATGTAGCACAATTTCTGCAGCAAAATATGTTTGTTTGCTTTAGTTGGTTCTGTTTCCCTTTATTTATTCTTTTGTTCTTGTGTATCTTCTGATGTGACCTACTGAGATTGGAACCTATGAGGGGGAAATGCTAAACCCTATCACATTTTCTAGATGGGGTAAAAGGTTAGAAAAATGGCGCTTGAGGAAGAACAAATTGAACAACATTTCGTCCTTAGTTGAAAAGGGACTAACACTTTGAACCTGAAAATACAGTTCAACTAATTTTTCAGTTAATTGGTGTAAGCCTTCAATCTACAAAGGTACACTTGATTCATGTTATTCTTCTTGTGTTGTGCTCAAAATCTCTATACATTAGTATCTTGCAGCAGAATACTCCCGAAAGCAAAGAGGAGGAAAGATTCAATCAATTTTATTAATCCTTAGTCCCTACAAGTTCTTTCATTGATTTCATCGTGTTTTACTGTTGGTAGGAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAGGTTTAGTTCTCTACTCTCAACTCTATGTTAAGCTTGAAATTTCATTAGTCACTGTGCATTTATTTGGCCTGGCTTGTTAGTAATAAGTTATTACTGCATCTACTTGCTTTGTATTTGGTAACATGTTTTAGAAACTCCGTCTTAAAGCTGCTTCTTGTCTTTGCTCTCATTACAGGTTCGGTAAGTTTTGTATTTTGGAAGAACCATTGAATTACTTTGGCCTTAAATGACTATTTATGACTACGAAGAACATATGGTTTAAGTTTTTAATCTTAACCTGAGACCTCATGGTGCTTGACCCATTTATTGACCGCTAGGCCACACCCTTGGGTGCTTCTTTTGTTCTTTTTCTTAAATAGAAATTGGTATTTGACGTCCATCTTGTAGACGGTTCCTGTGATAGTGTATAAATCAGTATTATTAAAAGTTGACTGATGAGCATTTCTTAACTGGGAACGATTTGGTTGGAGGTTGAGTGAACTGTGTAGGTTATTGGGTGGATGAAGTGAAAACTCAAGTAGAACATGTCTACAAGTGGATTCTCTTGAGTTCAGCTTTAAGAACTATTGCGCAAGACACCTCAAAATCTTCTATGCCCCTCTGTCTTATTACACTGTACTATGGAAACATAGTTGATTAAAAGTGTCAGTACTGTAGGTGGGGAGAGTCCTTTTTGGCATGAAAGGTTTAGGTACGAACAAGAGAGGGAAAGTTTTTAATGCTTTTTCCATTGTTTTTGAGGCAATAATCTTGGTATGACCTTTCCCTGCAGGTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</genome_strand>
        <mrna_strand>GACAACAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTTGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCGGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9140" PGL_stop="3019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9140" e_stop="8057"/>
            <exon e_start="7956" e_stop="7620"/>
            <exon e_start="5558" e_stop="4953"/>
            <exon e_start="3990" e_stop="3842"/>
            <exon e_start="3563" e_stop="3434"/>
            <exon e_start="3349" e_stop="3019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="0.994"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="9140" e_stop="8057" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="8056" i_stop="7957" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7956" e_stop="7620" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5558" e_stop="4953" e_length="606"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3842" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3563" e_stop="3434" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="3433" i_stop="3350" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3349" e_stop="3019" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9140" stop="8057"/>
              <exon start="7956" stop="7942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8112" stop="8057"/>
              <exon start="7956" stop="7620"/>
              <exon start="5558" stop="4953"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3434"/>
              <exon start="3349" stop="3019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R  F  V  Q  P  Y  P  Q  L  N  L  K  K  A  V  S  *  L  F  L  L  R  T  P  V  R  Q  I  R  C  S  *  W  K  A  Y  L  I  L  L  F  R  W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y  G  L  S  N  P  I  H  N  *  I  *  K  K  L  S  R  D  S  F  C  *  G  L  L  C  D  K  S  D  A  V  D  G  K  L  T  *  S  F  F  S  G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  V  C  P  T  L  S  T  I  K  S  K  K  S  C  L  V  T  L  S  A  K  D  S  C  A  T  N  Q  M  Q  L  M  E  S  L  P  D  P  S  F  Q  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8484" stop="8057"/>
                    <exon start="7956" stop="7620"/>
                    <exon start="5558" stop="4953"/>
                    <exon start="3990" stop="3842"/>
                    <exon start="3563" stop="3434"/>
                    <exon start="3349" stop="3254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVCPTLSTIKSKKSCLVTLSAKDSCATNQMQLMESLPDPSFQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7873" e_stop="7620"/>
            <exon e_start="5558" e_stop="5396"/>
            <exon e_start="5171" e_stop="4953"/>
            <exon e_start="3990" e_stop="3842"/>
            <exon e_start="3563" e_stop="3554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7873" e_stop="7620" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="7619" i_stop="5559" i_length="2061"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5558" e_stop="5396" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="5395" i_stop="5172" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5171" e_stop="4953" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4952" i_stop="3991" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3990" e_stop="3842" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3841" i_stop="3564" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3563" e_stop="3554" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7873" stop="7620"/>
              <exon start="5558" stop="5396"/>
              <exon start="5171" stop="4953"/>
              <exon start="3990" stop="3842"/>
              <exon start="3563" stop="3554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGA</gDNA_template>
            <first_frame> L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G </first_frame>
            <second_frame>  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q   </second_frame>
            <third_frame>   G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7624" stop="7620"/>
                    <exon start="5558" stop="5396"/>
                    <exon start="5171" stop="4953"/>
                    <exon start="3990" stop="3842"/>
                    <exon start="3563" stop="3554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLIFTKLTLSSRINLREKENMFTWKMGRHSTILIAFQKRETILLQSLDLRLSHPQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19140" PGL_stop="15503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19140" e_stop="18997"/>
            <exon e_start="17190" e_stop="16980"/>
            <exon e_start="15858" e_stop="15733"/>
            <exon e_start="15655" e_stop="15503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.927" e_score="0.993"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.812" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="19140" e_stop="18997" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.927">
            <gDNA_intron_boundary i_start="18996" i_stop="17191" i_length="1806"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17190" e_stop="16980" e_length="211"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16979" i_stop="15859" i_length="1121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15858" e_stop="15733" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.812" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15732" i_stop="15656" i_length="77"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15655" e_stop="15503" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19140" stop="18997"/>
              <exon start="17190" stop="16980"/>
              <exon start="15858" stop="15733"/>
              <exon start="15655" stop="15503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCGCTCTCTCTTCACTTTGCCCCTTCATTTTTTTTCCTTTCTGAATCCTTCATATCAATTGCCGATTACGCCATGGAAGAAGGTTCATCGCGACGTGCCAAACGTCCCTTCGTTGAGGACGATGACTCCAATAAAGCTCCAGA : GCAGAAGCGTGTAAGGTTCCCAAAGGGTAAGAAGGCAAAGCAGGGCGATACCACGATTGATGGGTGTGAAGATAAACCTAGTGGGCGGACAGATCCTCGCAATGCAGCCAAAGAGCGTTCGGCACGGCGGAATCAAATAACAGCGGAACTCCTTGATGAAGAAAACGAAGGTGAAATAGCTGACATATCGCGGGCAGAAGTGGAATATGAG : GAAAATGAAACATTCATTGATGATGGGATTGCAATAGAACCTTTTAATCTGAATAAAGAGAGAGAAGAAGGTTATTTTGATGCATCAGGAAACTATGTTGAATATTTAAATGAAAATGAGATAAAG : GATGCATGGCTTGATAGTGTTGATACTGAGAAAACATATTCTGGGAAGAAAGCTATCAAGATATCAAATGAAGATGAGATTCAAGACCTTACATCAGAACAACTAGGAAAGATGAAGAGGCGAATTGCTGATGTGCTCGAACCAGGAGAAACA</gDNA_template>
            <first_frame> T  A  L  S  S  L  C  P  F  I  F  F  P  F  *  I  L  H  I  N  C  R  L  R  H  G  R  R  F  I  A  T  C  Q  T  S  L  R  *  G  R  *  L  Q  *  S  S  R  :  A  E  A  C  K  V  P  K  G  *  E  G  K  A  G  R  Y  H  D  *  W  V  *  R  *  T  *  W  A  D  R  S  S  Q  C  S  Q  R  A  F  G  T  A  E  S  N  N  S  G  T  P  *  *  R  K  R  R  *  N  S  *  H  I  A  G  R  S  G  I  *   : G  K  *  N  I  H  *  *  W  D  C  N  R  T  F  *  S  E  *  R  E  R  R  R  L  F  *  C  I  R  K  L  C  *  I  F  K  *  K  *  D  K   : G  C  M  A  *  *  C  *  Y  *  E  N  I  F  W  E  E  S  Y  Q  D  I  K  *  R  *  D  S  R  P  Y  I  R  T  T  R  K  D  E  E  A  N  C  *  C  A  R  T  R  R  N  </first_frame>
            <second_frame>  P  L  S  L  H  F  A  P  S  F  F  F  L  S  E  S  F  I  S  I  A  D  Y  A  M  E  E  G  S  S  R  R  A  K  R  P  F  V  E  D  D  D  S  N  K  A  P  E :   Q  K  R  V  R  F  P  K  G  K  K  A  K  Q  G  D  T  T  I  D  G  C  E  D  K  P  S  G  R  T  D  P  R  N  A  A  K  E  R  S  A  R  R  N  Q  I  T  A  E  L  L  D  E  E  N  E  G  E  I  A  D  I  S  R  A  E  V  E  Y  E  :  E  N  E  T  F  I  D  D  G  I  A  I  E  P  F  N  L  N  K  E  R  E  E  G  Y  F  D  A  S  G  N  Y  V  E  Y  L  N  E  N  E  I  K  :  D  A  W  L  D  S  V  D  T  E  K  T  Y  S  G  K  K  A  I  K  I  S  N  E  D  E  I  Q  D  L  T  S  E  Q  L  G  K  M  K  R  R  I  A  D  V  L  E  P  G  E  T </second_frame>
            <third_frame>   R  S  L  F  T  L  P  L  H  F  F  S  F  L  N  P  S  Y  Q  L  P  I  T  P  W  K  K  V  H  R  D  V  P  N  V  P  S  L  R  T  M  T  P  I  K  L  Q   : S  R  S  V  *  G  S  Q  R  V  R  R  Q  S  R  A  I  P  R  L  M  G  V  K  I  N  L  V  G  G  Q  I  L  A  M  Q  P  K  S  V  R  H  G  G  I  K  *  Q  R  N  S  L  M  K  K  T  K  V  K  *  L  T  Y  R  G  Q  K  W  N  M  R :   K  M  K  H  S  L  M  M  G  L  Q  *  N  L  L  I  *  I  K  R  E  K  K  V  I  L  M  H  Q  E  T  M  L  N  I  *  M  K  M  R  *  R :   M  H  G  L  I  V  L  I  L  R  K  H  I  L  G  R  K  L  S  R  Y  Q  M  K  M  R  F  K  T  L  H  Q  N  N  *  E  R  *  R  G  E  L  L  M  C  S  N  Q  E  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19139" stop="18997"/>
                    <exon start="17190" stop="16980"/>
                    <exon start="15858" stop="15733"/>
                    <exon start="15655" stop="15503"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSLHFAPSFFFLSESFISIADYAMEEGSSRRAKRPFVEDDDSNKAPEQKRVRFPKGKKAKQGDTTIDGCEDKPSGRTDPRNAAKERSARRNQITAELLDEENEGEIADISRAEVEYEENETFIDDGIAIEPFNLNKEREEGYFDASGNYVEYLNENEIKDAWLDSVDTEKTYSGKKAIKISNEDEIQDLTSEQLGKMKRRIADVLEPGET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45523" PGL_stop="42803"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45512" e_stop="44980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="45512" e_stop="44980" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45512" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45511" stop="45064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTCGTAAGTTTTTTCTTTTTTTCTGTTCAATTGTTGCACGAAATCGAAGTGTAATCAATCCCTTTTGTAATCCAATTACAATGATTTACTTTTAGAGCGATAATTGCTGGTTCGTATAATAGAATGATCAAAACATTTACTAGTGTTGATTTTTTTTTTCGCTTTTCAGAAACTGTGCTGGTTAATTAGGGATTAAGGGGTACTTTGATATGTTTGCTTGAGAAAAATAGTGCTAAAAAACAATAATTTTATGCCTTAGTCAGGTCAAATTATGAATCTTCGCTATTTTGTAAGTTTGATGAAGTAAATCTACGAAAGAAAATAGTTTCTTTTGTCCAAAATTTTGCAGTGGTTTCTAATGCTTAGGAGATAATGTGTAATGAAGT</gDNA_template>
            <first_frame> E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  V  S  F  F  F  F  S  V  Q  L  L  H  E  I  E  V  *  S  I  P  F  V  I  Q  L  Q  *  F  T  F  R  A  I  I  A  G  S  Y  N  R  M  I  K  T  F  T  S  V  D  F  F  F  R  F  S  E  T  V  L  V  N  *  G  L  R  G  T  L  I  C  L  L  E  K  N  S  A  K  K  Q  *  F  Y  A  L  V  R  S  N  Y  E  S  S  L  F  C  K  F  D  E  V  N  L  R  K  K  I  V  S  F  V  Q  N  F  A  V  V  S  N  A  *  E  I  M  C  N  E   </first_frame>
            <second_frame>  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S  *  V  F  S  F  F  L  F  N  C  C  T  K  S  K  C  N  Q  S  L  L  *  S  N  Y  N  D  L  L  L  E  R  *  L  L  V  R  I  I  E  *  S  K  H  L  L  V  L  I  F  F  F  A  F  Q  K  L  C  W  L  I  R  D  *  G  V  L  *  Y  V  C  L  R  K  I  V  L  K  N  N  N  F  M  P  *  S  G  Q  I  M  N  L  R  Y  F  V  S  L  M  K  *  I  Y  E  R  K  *  F  L  L  S  K  I  L  Q  W  F  L  M  L  R  R  *  C  V  M  K  </second_frame>
            <third_frame>   K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F  R  K  F  F  L  F  F  C  S  I  V  A  R  N  R  S  V  I  N  P  F  C  N  P  I  T  M  I  Y  F  *  S  D  N  C  W  F  V  *  *  N  D  Q  N  I  Y  *  C  *  F  F  F  S  L  F  R  N  C  A  G  *  L  G  I  K  G  Y  F  D  M  F  A  *  E  K  *  C  *  K  T  I  I  L  C  L  S  Q  V  K  L  *  I  F  A  I  L  *  V  *  *  S  K  S  T  K  E  N  S  F  F  C  P  K  F  C  S  G  F  *  C  L  G  D  N  V  *  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0127E11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45523" e_stop="45363"/>
            <exon e_start="44819" e_stop="44754"/>
            <exon e_start="44335" e_stop="44261"/>
            <exon e_start="43811" e_stop="43688"/>
            <exon e_start="43601" e_stop="43479"/>
            <exon e_start="43325" e_stop="42803"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.908" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.620" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45523" e_stop="45363" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.908" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45362" i_stop="44820" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44819" e_stop="44754" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.750" acc_prob="0.977">
            <gDNA_intron_boundary i_start="44753" i_stop="44336" i_length="418"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44335" e_stop="44261" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.620">
            <gDNA_intron_boundary i_start="44260" i_stop="43812" i_length="449"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43811" e_stop="43688" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.950">
            <gDNA_intron_boundary i_start="43687" i_stop="43602" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43601" e_stop="43479" e_length="123"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43478" i_stop="43326" i_length="153"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="43325" e_stop="42803" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45523" stop="45363"/>
              <exon start="44819" stop="44754"/>
              <exon start="44335" stop="44261"/>
              <exon start="43811" stop="43688"/>
              <exon start="43601" stop="43479"/>
              <exon start="43325" stop="42803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316159" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGGTTTATGAAAATGCAGAGGTGCTGTTCATCTGCGATAGGTAAACGATGGTTTTCTTCATTCAACAATGATAAAATTGTGGCTTCAGTGCTCTTTGAAAGATTACCGGTAGTGGTACCCAAAATCGATCCTACTGTATATGCTTTTCAAGAATTTTC : GTTTCGTTGGAGGCAGCAATATCGGCGAGAGTATCCAGAAAGTTTTCTGAAGAAGTCTGATACCAG : GGGAAAAGGTGATTATCAAATTGATTATAAACCAGCTCCTCGAATCTCAGAAGCAGATAAGACTAATGATCAAAG : GTCATTACAGCGAGCACTAGACAAGAGACTCTATCTTCTAGTCCATGGTACCACACAAGGTAGTGGAAAGCCTGTCTGGCATTTCCCTGAAAAAGTTTATGAGTCTGAAGAGAATTTGCGCAAG : TGTGCTGAGTCTGCCTTAGAATCTTTCATTGGAGATCTTTCACATACATATTTTGTTGGAAATGCCCCTATGGGTCATATGGTCATGCAACCCACTGAAGACAAGAAAATCCCTTCAATCAAG : CGCTTCTTCTTCAAATCCCAAGTTATTGCAGCCAACAAATTTGATATTAGGAAATGTGATGATTTTGTCTGGGTGACCAAAGATGAACTGTTGGAATACTTTCCCGAGCAAGCTGAATTCCTGAACAAGATGATCATCAGCTGACGTTAGTTTCTGCTCAAACTTCAGGCTTCGTAGGATAGCGGAAATAGTTTTGATCTGAAAAATCCATTTCTTCCCGCAAATGCAATGGGCTTGGACTGCTGGAGACTGATTTTTATGTCTCGACAGTCTGACTAGCATGCCATTCATCAAGTCCTGTAGAATTTTGAACATAGGATACCTAAATTATGATAGCCTTCTGCCTCAGCTATCACCAATCCTCTTTGTGAGAAGCTATGCTAAAAACTCTGAAATAGTCATGAATTTTAGTATGAATATGCTTTTGTAGATGCACGATTTCATCTCGCGTCATAAAATAAACAAAACAAATTACATGTTGCAGCCTTAACGAGTTGCGAGCTTTGTTTCATAGCTGCATTGT</gDNA_template>
            <first_frame> L  G  F  M  K  M  Q  R  C  C  S  S  A  I  G  K  R  W  F  S  S  F  N  N  D  K  I  V  A  S  V  L  F  E  R  L  P  V  V  V  P  K  I  D  P  T  V  Y  A  F  Q  E  F  S :   F  R  W  R  Q  Q  Y  R  R  E  Y  P  E  S  F  L  K  K  S  D  T  R :   G  K  G  D  Y  Q  I  D  Y  K  P  A  P  R  I  S  E  A  D  K  T  N  D  Q  R :   S  L  Q  R  A  L  D  K  R  L  Y  L  L  V  H  G  T  T  Q  G  S  G  K  P  V  W  H  F  P  E  K  V  Y  E  S  E  E  N  L  R  K  :  C  A  E  S  A  L  E  S  F  I  G  D  L  S  H  T  Y  F  V  G  N  A  P  M  G  H  M  V  M  Q  P  T  E  D  K  K  I  P  S  I  K  :  R  F  F  F  K  S  Q  V  I  A  A  N  K  F  D  I  R  K  C  D  D  F  V  W  V  T  K  D  E  L  L  E  Y  F  P  E  Q  A  E  F  L  N  K  M  I  I  S  *  R  *  F  L  L  K  L  Q  A  S  *  D  S  G  N  S  F  D  L  K  N  P  F  L  P  A  N  A  M  G  L  D  C  W  R  L  I  F  M  S  R  Q  S  D  *  H  A  I  H  Q  V  L  *  N  F  E  H  R  I  P  K  L  *  *  P  S  A  S  A  I  T  N  P  L  C  E  K  L  C  *  K  L  *  N  S  H  E  F  *  Y  E  Y  A  F  V  D  A  R  F  H  L  A  S  *  N  K  Q  N  K  L  H  V  A  A  L  T  S  C  E  L  C  F  I  A  A  L  </first_frame>
            <second_frame>  *  G  L  *  K  C  R  G  A  V  H  L  R  *  V  N  D  G  F  L  H  S  T  M  I  K  L  W  L  Q  C  S  L  K  D  Y  R  *  W  Y  P  K  S  I  L  L  Y  M  L  F  K  N  F   : R  F  V  G  G  S  N  I  G  E  S  I  Q  K  V  F  *  R  S  L  I  P   : G  E  K  V  I  I  K  L  I  I  N  Q  L  L  E  S  Q  K  Q  I  R  L  M  I  K   : G  H  Y  S  E  H  *  T  R  D  S  I  F  *  S  M  V  P  H  K  V  V  E  S  L  S  G  I  S  L  K  K  F  M  S  L  K  R  I  C  A  S :   V  L  S  L  P  *  N  L  S  L  E  I  F  H  I  H  I  L  L  E  M  P  L  W  V  I  W  S  C  N  P  L  K  T  R  K  S  L  Q  S  S :   A  S  S  S  N  P  K  L  L  Q  P  T  N  L  I  L  G  N  V  M  I  L  S  G  *  P  K  M  N  C  W  N  T  F  P  S  K  L  N  S  *  T  R  *  S  S  A  D  V  S  F  C  S  N  F  R  L  R  R  I  A  E  I  V  L  I  *  K  I  H  F  F  P  Q  M  Q  W  A  W  T  A  G  D  *  F  L  C  L  D  S  L  T  S  M  P  F  I  K  S  C  R  I  L  N  I  G  Y  L  N  Y  D  S  L  L  P  Q  L  S  P  I  L  F  V  R  S  Y  A  K  N  S  E  I  V  M  N  F  S  M  N  M  L  L  *  M  H  D  F  I  S  R  H  K  I  N  K  T  N  Y  M  L  Q  P  *  R  V  A  S  F  V  S  *  L  H  C </second_frame>
            <third_frame>   R  V  Y  E  N  A  E  V  L  F  I  C  D  R  *  T  M  V  F  F  I  Q  Q  *  *  N  C  G  F  S  A  L  *  K  I  T  G  S  G  T  Q  N  R  S  Y  C  I  C  F  S  R  I  F  :  V  S  L  E  A  A  I  S  A  R  V  S  R  K  F  S  E  E  V  *  Y  Q  :  G  K  R  *  L  S  N  *  L  *  T  S  S  S  N  L  R  S  R  *  D  *  *  S  K  :  V  I  T  A  S  T  R  Q  E  T  L  S  S  S  P  W  Y  H  T  R  *  W  K  A  C  L  A  F  P  *  K  S  L  *  V  *  R  E  F  A  Q   : V  C  *  V  C  L  R  I  F  H  W  R  S  F  T  Y  I  F  C  W  K  C  P  Y  G  S  Y  G  H  A  T  H  *  R  Q  E  N  P  F  N  Q   : A  L  L  L  Q  I  P  S  Y  C  S  Q  Q  I  *  Y  *  E  M  *  *  F  C  L  G  D  Q  R  *  T  V  G  I  L  S  R  A  S  *  I  P  E  Q  D  D  H  Q  L  T  L  V  S  A  Q  T  S  G  F  V  G  *  R  K  *  F  *  S  E  K  S  I  S  S  R  K  C  N  G  L  G  L  L  E  T  D  F  Y  V  S  T  V  *  L  A  C  H  S  S  S  P  V  E  F  *  T  *  D  T  *  I  M  I  A  F  C  L  S  Y  H  Q  S  S  L  *  E  A  M  L  K  T  L  K  *  S  *  I  L  V  *  I  C  F  C  R  C  T  I  S  S  R  V  I  K  *  T  K  Q  I  T  C  C  S  L  N  E  L  R  A  L  F  H  S  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45523" stop="45363"/>
                    <exon start="44819" stop="44754"/>
                    <exon start="44335" stop="44261"/>
                    <exon start="43811" stop="43688"/>
                    <exon start="43601" stop="43479"/>
                    <exon start="43325" stop="43182"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGFMKMQRCCSSAIGKRWFSSFNNDKIVASVLFERLPVVVPKIDPTVYAFQEFSFRWRQQYRREYPESFLKKSDTRGKGDYQIDYKPAPRISEADKTNDQRSLQRALDKRLYLLVHGTTQGSGKPVWHFPEKVYESEENLRKCAESALESFIGDLSHTYFVGNAPMGHMVMQPTEDKKIPSIKRFFFKSQVIAANKFDIRKCDDFVWVTKDELLEYFPEQAEFLNKMIIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="48513" PGL_stop="47789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48513" e_stop="47789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="48513" e_stop="47789" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48513" stop="47789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326781" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTTTTCAGCCTTGACCACTCGATCTTCTGGAAACATACCAAAGTAGAGAAAACACTGCTTGAGCTCAATTGACAAATCATTGTAGCTTAGTGATAGTATGTTGGAGATTTCAACAGATTTATCTTCTTTAATGCTCTTCCAAAGGTGATCTTTCACCTTTTGCCATTCATCTAGATCCTTTTTATGCGAAAGTAGTCCGCTCAATACAACAATTGCAAGAGGTAAACCTCTACACTTTTCCACCATATCCTTAGCTAGACTTTCCATTTCTGCAACCATTGCTCGAACATCAAGTAGTTTCCTAAGAAAGAGATCCCAACTTTCTTCTTGACTTAGGAAACGAAGTTTATGAACAAAACCTCTGTCGGCTGCTCTTTCAGCGATATCCTCTTTGCGCGTGGTAATAATGACTCTGCTGCCATTCTTGTCATCCGGGAATGCTCTTTTCAAACTCTCCCATGCTTCTCTTTGCCAGACATCATCAACCACCACAAGGTATTTGCGTTCTTTCAATAGATCACGAAGGTGGTTTTCTAGATCTCTTTCATCCATCTTTTCCAACAATCCTAGAGTTCCCATGGTGCGACCTTGGATGGATTTTATGATAGTCTTAAGAAGATCCATTGTGTTGTACTCTTGAGAAACACATATCCAAGCGTGTGTAGGGAAGCGAGAGGATATATTAGGATTTTTGTAGAGGTTTCTTGCAAGAGTGGTCTTGC</gDNA_template>
            <first_frame> C  V  F  S  L  D  H  S  I  F  W  K  H  T  K  V  E  K  T  L  L  E  L  N  *  Q  I  I  V  A  *  *  *  Y  V  G  D  F  N  R  F  I  F  F  N  A  L  P  K  V  I  F  H  L  L  P  F  I  *  I  L  F  M  R  K  *  S  A  Q  Y  N  N  C  K  R  *  T  S  T  L  F  H  H  I  L  S  *  T  F  H  F  C  N  H  C  S  N  I  K  *  F  P  K  K  E  I  P  T  F  F  L  T  *  E  T  K  F  M  N  K  T  S  V  G  C  S  F  S  D  I  L  F  A  R  G  N  N  D  S  A  A  I  L  V  I  R  E  C  S  F  Q  T  L  P  C  F  S  L  P  D  I  I  N  H  H  K  V  F  A  F  F  Q  *  I  T  K  V  V  F  *  I  S  F  I  H  L  F  Q  Q  S  *  S  S  H  G  A  T  L  D  G  F  Y  D  S  L  K  K  I  H  C  V  V  L  L  R  N  T  Y  P  S  V  C  R  E  A  R  G  Y  I  R  I  F  V  E  V  S  C  K  S  G  L   </first_frame>
            <second_frame>  V  F  S  A  L  T  T  R  S  S  G  N  I  P  K  *  R  K  H  C  L  S  S  I  D  K  S  L  *  L  S  D  S  M  L  E  I  S  T  D  L  S  S  L  M  L  F  Q  R  *  S  F  T  F  C  H  S  S  R  S  F  L  C  E  S  S  P  L  N  T  T  I  A  R  G  K  P  L  H  F  S  T  I  S  L  A  R  L  S  I  S  A  T  I  A  R  T  S  S  S  F  L  R  K  R  S  Q  L  S  S  *  L  R  K  R  S  L  *  T  K  P  L  S  A  A  L  S  A  I  S  S  L  R  V  V  I  M  T  L  L  P  F  L  S  S  G  N  A  L  F  K  L  S  H  A  S  L  C  Q  T  S  S  T  T  T  R  Y  L  R  S  F  N  R  S  R  R  W  F  S  R  S  L  S  S  I  F  S  N  N  P  R  V  P  M  V  R  P  W  M  D  F  M  I  V  L  R  R  S  I  V  L  Y  S  *  E  T  H  I  Q  A  C  V  G  K  R  E  D  I  L  G  F  L  *  R  F  L  A  R  V  V  L  </second_frame>
            <third_frame>   C  F  Q  P  *  P  L  D  L  L  E  T  Y  Q  S  R  E  N  T  A  *  A  Q  L  T  N  H  C  S  L  V  I  V  C  W  R  F  Q  Q  I  Y  L  L  *  C  S  S  K  G  D  L  S  P  F  A  I  H  L  D  P  F  Y  A  K  V  V  R  S  I  Q  Q  L  Q  E  V  N  L  Y  T  F  P  P  Y  P  *  L  D  F  P  F  L  Q  P  L  L  E  H  Q  V  V  S  *  E  R  D  P  N  F  L  L  D  L  G  N  E  V  Y  E  Q  N  L  C  R  L  L  F  Q  R  Y  P  L  C  A  W  *  *  *  L  C  C  H  S  C  H  P  G  M  L  F  S  N  S  P  M  L  L  F  A  R  H  H  Q  P  P  Q  G  I  C  V  L  S  I  D  H  E  G  G  F  L  D  L  F  H  P  S  F  P  T  I  L  E  F  P  W  C  D  L  G  W  I  L  *  *  S  *  E  D  P  L  C  C  T  L  E  K  H  I  S  K  R  V  *  G  S  E  R  I  Y  *  D  F  C  R  G  F  L  Q  E  W  S  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48158" stop="47871"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKPLSAALSAISSLRVVIMTLLPFLSSGNALFKLSHASLCQTSSTTTRYLRSFNRSRRWFSRSLSSIFSNNPRVPMVRPWMDFMIVLRRSIVLYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="60416" PGL_stop="57019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60416" e_stop="60382"/>
            <exon e_start="57679" e_stop="57019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60416" e_stop="60382" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="60381" i_stop="57680" i_length="2702"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57679" e_stop="57019" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60416" stop="60382"/>
              <exon start="57679" stop="57019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGCCGATAATCAGTGGATTTTCACCTATTTGAG : GGTGTACTTTGAGGAAGGTGAATGCTCAAATTCGTCATTCTTTTTAGTGGAAAAATACATCTCGAGATGATGGAAATTGAAATTGCGTCCCTTTACCACTACGTATAAGCTGGTCAAGCTGATTTTGAGTTGTTTTCGGTACAACTTTTAGCTTGAATATTCTGAGTGTCCTCCTTTCTCTCGACTGAGTAGCTTTTACTCTACAAGAAATTCATCTGCTAGAGTAGTTCTGCAAAAGAAAAGCAATCAAAATAATGGATGATCGGGTTGTTCTTGACAAGGGTGGAACAAGGAAGTTGCCTCAGTGGATGTTTGCTACATCTGCTGCTGATCAAGTAAAGGAAAAAGCCAAAACTGATAAAGTAGACAATAATAATACTACAGAGAAGGAGATTGTCACTCAGAAACAGAAAAATAGAAGGATTAAGGATAAAAAGGAAACATTCACTGAGGAGTCGTCCACTCAGCTTCCAATATGCCAAACAACAAAAAGAAGCAGAAGAAAATTAAACCTACCAAATGATTATTGTAATGATGAAAGCACTTCAATGGGGAGTGAATGTGACAGCAAGCAAGCAAGTGGTGATGGAGAGGTTCCTATGTTGAGGAGACAGAAACAGAAAACGAAGAATTCCAAGACTGAGAGAGTTGCTGAGATGGA</gDNA_template>
            <first_frame> V  A  D  N  Q  W  I  F  T  Y  L  R :   V  Y  F  E  E  G  E  C  S  N  S  S  F  F  L  V  E  K  Y  I  S  R  *  W  K  L  K  L  R  P  F  T  T  T  Y  K  L  V  K  L  I  L  S  C  F  R  Y  N  F  *  L  E  Y  S  E  C  P  P  F  S  R  L  S  S  F  Y  S  T  R  N  S  S  A  R  V  V  L  Q  K  K  S  N  Q  N  N  G  *  S  G  C  S  *  Q  G  W  N  K  E  V  A  S  V  D  V  C  Y  I  C  C  *  S  S  K  G  K  S  Q  N  *  *  S  R  Q  *  *  Y  Y  R  E  G  D  C  H  S  E  T  E  K  *  K  D  *  G  *  K  G  N  I  H  *  G  V  V  H  S  A  S  N  M  P  N  N  K  K  K  Q  K  K  I  K  P  T  K  *  L  L  *  *  *  K  H  F  N  G  E  *  M  *  Q  Q  A  S  K  W  *  W  R  G  S  Y  V  E  E  T  E  T  E  N  E  E  F  Q  D  *  E  S  C  *  D  G </first_frame>
            <second_frame>  S  P  I  I  S  G  F  S  P  I  *   : G  C  T  L  R  K  V  N  A  Q  I  R  H  S  F  *  W  K  N  T  S  R  D  D  G  N  *  N  C  V  P  L  P  L  R  I  S  W  S  S  *  F  *  V  V  F  G  T  T  F  S  L  N  I  L  S  V  L  L  S  L  D  *  V  A  F  T  L  Q  E  I  H  L  L  E  *  F  C  K  R  K  A  I  K  I  M  D  D  R  V  V  L  D  K  G  G  T  R  K  L  P  Q  W  M  F  A  T  S  A  A  D  Q  V  K  E  K  A  K  T  D  K  V  D  N  N  N  T  T  E  K  E  I  V  T  Q  K  Q  K  N  R  R  I  K  D  K  K  E  T  F  T  E  E  S  S  T  Q  L  P  I  C  Q  T  T  K  R  S  R  R  K  L  N  L  P  N  D  Y  C  N  D  E  S  T  S  M  G  S  E  C  D  S  K  Q  A  S  G  D  G  E  V  P  M  L  R  R  Q  K  Q  K  T  K  N  S  K  T  E  R  V  A  E  M   </second_frame>
            <third_frame>   R  R  *  S  V  D  F  H  L  F  E  :  G  V  L  *  G  R  *  M  L  K  F  V  I  L  F  S  G  K  I  H  L  E  M  M  E  I  E  I  A  S  L  Y  H  Y  V  *  A  G  Q  A  D  F  E  L  F  S  V  Q  L  L  A  *  I  F  *  V  S  S  F  L  S  T  E  *  L  L  L  Y  K  K  F  I  C  *  S  S  S  A  K  E  K  Q  S  K  *  W  M  I  G  L  F  L  T  R  V  E  Q  G  S  C  L  S  G  C  L  L  H  L  L  L  I  K  *  R  K  K  P  K  L  I  K  *  T  I  I  I  L  Q  R  R  R  L  S  L  R  N  R  K  I  E  G  L  R  I  K  R  K  H  S  L  R  S  R  P  L  S  F  Q  Y  A  K  Q  Q  K  E  A  E  E  N  *  T  Y  Q  M  I  I  V  M  M  K  A  L  Q  W  G  V  N  V  T  A  S  K  Q  V  V  M  E  R  F  L  C  *  G  D  R  N  R  K  R  R  I  P  R  L  R  E  L  L  R  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57452" stop="57021"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCKRKAIKIMDDRVVLDKGGTRKLPQWMFATSAADQVKEKAKTDKVDNNNTTEKEIVTQKQKNRRIKDKKETFTEESSTQLPICQTTKRSRRKLNLPNDYCNDESTSMGSECDSKQASGDGEVPMLRRQKQKTKNSKTERVAEM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="63536" PGL_stop="67974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63536" e_stop="64083"/>
            <exon e_start="67722" e_stop="67974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63536" e_stop="64083" e_length="548"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64084" i_stop="67721" i_length="3638"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67722" e_stop="67974" e_length="253"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63536" stop="64083"/>
              <exon start="67722" stop="67974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329894" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTTATCGAGGGGGGTAACGGGGGTAGTGGTCTCCAAATGCCGGCGAATTATGGGGACTATTTCATTGGACCGGGGTTTGAGCAATTGATCCAGAATTTGGCAGAAAATGATCCAAACCGATATGGGACTCCTCCGGCGTCGAGAGCAGCGGTGGAGGGGCTCCCTACCATCAAAGTTGATGAGGAATTGATGCGTTCTGAACTGGCACAGTGTGCTGTTTGTAAGGATGATTTTGAGATGGGGTCAGATGTGATACAGATGCCTTGTAAGCATGTTTATCATAAGGATTGTATCATACCGTGGCTTGAGTTGCACAGTTCTTGCCCGGTTTGTCGCTATGAGTTGCCAACGGATGAGCCTGAGAATGAGAACAGGCAAAGAGACAATGATGGGGACTCGAGCGGGGATGGTTCTGCTTCTGGAAGTGGGGGATCAGGGAGAAGGTTTACTACAATATCATTGCCATGGCCTTTGGGAAGCTTTGGAGCATCATCTAGCCAGGGATGATCCGAGTCTCGTGGGCAGCGGAACAGGGAGTCTAATTAG : GTGGTATCCTTGCTTGCAGGTTGTATCATGGATGACAAAGTTGGAGGAGTTGTTGGGTAGATAATTAGAAAATGCTACAAAGGTAAAGGATTAGGTTTCATCTCTTAAAACATAGATACAGGGTCTACACAAACCCCAGATAGTATTGCAAGATGTTTGTCTGAATGTTTTGCATCAGATGTCCAAAGTTTTCATTTATGCTTCATCAATCGCGAATTTTGCGGATTGTTTTAGTCCTTGTGCAGTTGATCTG</gDNA_template>
            <first_frame> S  L  S  R  G  V  T  G  V  V  V  S  K  C  R  R  I  M  G  T  I  S  L  D  R  G  L  S  N  *  S  R  I  W  Q  K  M  I  Q  T  D  M  G  L  L  R  R  R  E  Q  R  W  R  G  S  L  P  S  K  L  M  R  N  *  C  V  L  N  W  H  S  V  L  F  V  R  M  I  L  R  W  G  Q  M  *  Y  R  C  L  V  S  M  F  I  I  R  I  V  S  Y  R  G  L  S  C  T  V  L  A  R  F  V  A  M  S  C  Q  R  M  S  L  R  M  R  T  G  K  E  T  M  M  G  T  R  A  G  M  V  L  L  L  E  V  G  D  Q  G  E  G  L  L  Q  Y  H  C  H  G  L  W  E  A  L  E  H  H  L  A  R  D  D  P  S  L  V  G  S  G  T  G  S  L  I  R :   W  Y  P  C  L  Q  V  V  S  W  M  T  K  L  E  E  L  L  G  R  *  L  E  N  A  T  K  V  K  D  *  V  S  S  L  K  T  *  I  Q  G  L  H  K  P  Q  I  V  L  Q  D  V  C  L  N  V  L  H  Q  M  S  K  V  F  I  Y  A  S  S  I  A  N  F  A  D  C  F  S  P  C  A  V  D  L </first_frame>
            <second_frame>  R  Y  R  G  G  *  R  G  *  W  S  P  N  A  G  E  L  W  G  L  F  H  W  T  G  V  *  A  I  D  P  E  F  G  R  K  *  S  K  P  I  W  D  S  S  G  V  E  S  S  G  G  G  A  P  Y  H  Q  S  *  *  G  I  D  A  F  *  T  G  T  V  C  C  L  *  G  *  F  *  D  G  V  R  C  D  T  D  A  L  *  A  C  L  S  *  G  L  Y  H  T  V  A  *  V  A  Q  F  L  P  G  L  S  L  *  V  A  N  G  *  A  *  E  *  E  Q  A  K  R  Q  *  W  G  L  E  R  G  W  F  C  F  W  K  W  G  I  R  E  K  V  Y  Y  N  I  I  A  M  A  F  G  K  L  W  S  I  I  *  P  G  M  I  R  V  S  W  A  A  E  Q  G  V  *  L   : G  G  I  L  A  C  R  L  Y  H  G  *  Q  S  W  R  S  C  W  V  D  N  *  K  M  L  Q  R  *  R  I  R  F  H  L  L  K  H  R  Y  R  V  Y  T  N  P  R  *  Y  C  K  M  F  V  *  M  F  C  I  R  C  P  K  F  S  F  M  L  H  Q  S  R  I  L  R  I  V  L  V  L  V  Q  L  I   </second_frame>
            <third_frame>   V  I  E  G  G  N  G  G  S  G  L  Q  M  P  A  N  Y  G  D  Y  F  I  G  P  G  F  E  Q  L  I  Q  N  L  A  E  N  D  P  N  R  Y  G  T  P  P  A  S  R  A  A  V  E  G  L  P  T  I  K  V  D  E  E  L  M  R  S  E  L  A  Q  C  A  V  C  K  D  D  F  E  M  G  S  D  V  I  Q  M  P  C  K  H  V  Y  H  K  D  C  I  I  P  W  L  E  L  H  S  S  C  P  V  C  R  Y  E  L  P  T  D  E  P  E  N  E  N  R  Q  R  D  N  D  G  D  S  S  G  D  G  S  A  S  G  S  G  G  S  G  R  R  F  T  T  I  S  L  P  W  P  L  G  S  F  G  A  S  S  S  Q  G  *  S  E  S  R  G  Q  R  N  R  E  S  N  *  :  V  V  S  L  L  A  G  C  I  M  D  D  K  V  G  G  V  V  G  *  I  I  R  K  C  Y  K  G  K  G  L  G  F  I  S  *  N  I  D  T  G  S  T  Q  T  P  D  S  I  A  R  C  L  S  E  C  F  A  S  D  V  Q  S  F  H  L  C  F  I  N  R  E  F  C  G  L  F  *  S  L  C  S  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63538" stop="64044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIEGGNGGSGLQMPANYGDYFIGPGFEQLIQNLAENDPNRYGTPPASRAAVEGLPTIKVDEELMRSELAQCAVCKDDFEMGSDVIQMPCKHVYHKDCIIPWLELHSSCPVCRYELPTDEPENENRQRDNDGDSSGDGSASGSGGSGRRFTTISLPWPLGSFGASSSQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="78789" PGL_stop="79532"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78789" e_stop="79532"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="78789" e_stop="79532" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78789" stop="79532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTACATATTTGTTGTTTTGGGGCTCTGTTTTTTTTTTTTTTGCTTCCATGAATCGAGCTTTTTCTATTACTTGAAACTTCAACTGAACCTGCTTTATTGATTTGTAAAAGTTTTTTTTCTTCTTTTGTTTGGGGTTTTGTTTAATTGAGCTCTGTTTTCCAGAGCTTGGTGAATTTGTTGTTTTTCTTCTTTGTTGGGGTTTGCTCAATTCAGCTCATAAATCCCATATTGGTGCTCTATTTGGACCTGATTTTCAATTATTTGTTGTTTTTTATTTGTTGGGGTTTGCTCAATTCAGCTCACAATTCCCGTATTAGTACTCTATTTTGGATTTGATTTTCGATTATTGTTGGGTTTTGTTTGTTGATAAATCCTAGTAATTTTCCACCACTACCGTTTTTGCTGCTAGTGTTTTGAGCTTCTAATGTCGACGTCTGCAGAGGGAAATGGAGCTATAATTGATCCTCAGAGGCAACAACAACAGGCGCCTACTGGGGTTGGTACAAATGGTGCTTTAACAGTGAAAAAACCGCCGGTAAAAGACCGGCATAGTAAGGTTGATGGTAGAGGAAGACGTATAAGGATGCCAATTGTATGTGCGGCAAGAGTTTTTCAGCTTACTCGTGAATTGGGTCATAAATCCGATGGACAAACTATTGAATGGCTGCTTCGTCAAGCTGAGCCTTCAATTATAGCTGCTACTGGTACTGGTACTATTCCTGCTAGTTTCTCGACTGTATC</gDNA_template>
            <first_frame> F  L  H  I  C  C  F  G  A  L  F  F  F  F  L  L  P  *  I  E  L  F  L  L  L  E  T  S  T  E  P  A  L  L  I  C  K  S  F  F  S  S  F  V  W  G  F  V  *  L  S  S  V  F  Q  S  L  V  N  L  L  F  F  F  F  V  G  V  C  S  I  Q  L  I  N  P  I  L  V  L  Y  L  D  L  I  F  N  Y  L  L  F  F  I  C  W  G  L  L  N  S  A  H  N  S  R  I  S  T  L  F  W  I  *  F  S  I  I  V  G  F  C  L  L  I  N  P  S  N  F  P  P  L  P  F  L  L  L  V  F  *  A  S  N  V  D  V  C  R  G  K  W  S  Y  N  *  S  S  E  A  T  T  T  G  A  Y  W  G  W  Y  K  W  C  F  N  S  E  K  T  A  G  K  R  P  A  *  *  G  *  W  *  R  K  T  Y  K  D  A  N  C  M  C  G  K  S  F  S  A  Y  S  *  I  G  S  *  I  R  W  T  N  Y  *  M  A  A  S  S  S  *  A  F  N  Y  S  C  Y  W  Y  W  Y  Y  S  C  *  F  L  D  C  I </first_frame>
            <second_frame>  F  Y  I  F  V  V  L  G  L  C  F  F  F  F  C  F  H  E  S  S  F  F  Y  Y  L  K  L  Q  L  N  L  L  Y  *  F  V  K  V  F  F  L  L  L  F  G  V  L  F  N  *  A  L  F  S  R  A  W  *  I  C  C  F  S  S  L  L  G  F  A  Q  F  S  S  *  I  P  Y  W  C  S  I  W  T  *  F  S  I  I  C  C  F  L  F  V  G  V  C  S  I  Q  L  T  I  P  V  L  V  L  Y  F  G  F  D  F  R  L  L  L  G  F  V  C  *  *  I  L  V  I  F  H  H  Y  R  F  C  C  *  C  F  E  L  L  M  S  T  S  A  E  G  N  G  A  I  I  D  P  Q  R  Q  Q  Q  Q  A  P  T  G  V  G  T  N  G  A  L  T  V  K  K  P  P  V  K  D  R  H  S  K  V  D  G  R  G  R  R  I  R  M  P  I  V  C  A  A  R  V  F  Q  L  T  R  E  L  G  H  K  S  D  G  Q  T  I  E  W  L  L  R  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  S  F  S  T  V   </second_frame>
            <third_frame>   F  T  Y  L  L  F  W  G  S  V  F  F  F  F  A  S  M  N  R  A  F  S  I  T  *  N  F  N  *  T  C  F  I  D  L  *  K  F  F  F  F  F  C  L  G  F  C  L  I  E  L  C  F  P  E  L  G  E  F  V  V  F  L  L  C  W  G  L  L  N  S  A  H  K  S  H  I  G  A  L  F  G  P  D  F  Q  L  F  V  V  F  Y  L  L  G  F  A  Q  F  S  S  Q  F  P  Y  *  Y  S  I  L  D  L  I  F  D  Y  C  W  V  L  F  V  D  K  S  *  *  F  S  T  T  T  V  F  A  A  S  V  L  S  F  *  C  R  R  L  Q  R  E  M  E  L  *  L  I  L  R  G  N  N  N  R  R  L  L  G  L  V  Q  M  V  L  *  Q  *  K  N  R  R  *  K  T  G  I  V  R  L  M  V  E  E  D  V  *  G  C  Q  L  Y  V  R  Q  E  F  F  S  L  L  V  N  W  V  I  N  P  M  D  K  L  L  N  G  C  F  V  K  L  S  L  Q  L  *  L  L  L  V  L  V  L  F  L  L  V  S  R  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79201" stop="79530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFELLMSTSAEGNGAIIDPQRQQQQAPTGVGTNGALTVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFSTV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78899" stop="79108"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFFFFFCLGFCLIELCFPELGEFVVFLLCWGLLNSAHKSHIGALFGPDFQLFVVFYLLGFAQFSSQFPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="79710" PGL_stop="80541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79710" e_stop="80541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="79710" e_stop="80541" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79710" stop="80541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322624" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACTGCTGTGGGTCCCACAGCTGGGTTTTGGGCTGTTCCAGCTAGGCCTGATTTTGGTCAAATTTGGAGCTTTGCGGCGGCACCGCCACCTGAAATGATGGTGCCAACCTCCGCGGCTGCAGCAGCTGCAGCCGCGGCAGCGTTAAGTTCGCAGAGTTCTAGATTCTTTCAGCAGCAGATGGGTGAGGCTTCAGCTGCTAGAGTTGGGAATTACTTACCAATGACTCAAGGGCATCTCAATTTGCTAGCTTCTCTATCAGGTCCTCCACAGCCCTCTTCCGGGAGAAGAGACGACGACGGACGTTGAAGATATGATTATTGTTATTGTTATTGTTATCGTTATTGTTGTTAATATATCGTATAAATGTGTTTTAATGTTCTTGTTTGTGTTAGATGAGAAATTTGTTGCTAGGTTCTAGTGAGTGAGAAATGAACTAGGGGCTTGTTCAATTTCATGAATTATTGCTAGGATTAGGTTTGTTTGCTATATCTCATTTGTCAAGAGTTTACGTTCACCGAGTTTTGGTGTTGTAAGCTGTGGGACGATAACACGAAACACAAGCATCAGGGGAAGTTGTTGCTTGTGATGATGAATTTGGTGGGGTTTGTTCTGTTGTTTGCAGACCTCACAATAAGCTGCTTTGATCACATTGTAACAAGATATAATAGGGGATCAGTGTGGACTATGAAAACCTGTAGTTCCACATGAATGTTTTGTAAGGAAACCATGGCGGTTTCCGTTGAATTCAATTCTGTAATTTGTTGAAACTATATCAGTTGTGAGCTTAAACTTTCCTACTCAAAAGATTGCTATGGACTTCAATTTATTACT</gDNA_template>
            <first_frame> Y  C  C  G  S  H  S  W  V  L  G  C  S  S  *  A  *  F  W  S  N  L  E  L  C  G  G  T  A  T  *  N  D  G  A  N  L  R  G  C  S  S  C  S  R  G  S  V  K  F  A  E  F  *  I  L  S  A  A  D  G  *  G  F  S  C  *  S  W  E  L  L  T  N  D  S  R  A  S  Q  F  A  S  F  S  I  R  S  S  T  A  L  F  R  E  K  R  R  R  R  T  L  K  I  *  L  L  L  L  L  L  L  S  L  L  L  L  I  Y  R  I  N  V  F  *  C  S  C  L  C  *  M  R  N  L  L  L  G  S  S  E  *  E  M  N  *  G  L  V  Q  F  H  E  L  L  L  G  L  G  L  F  A  I  S  H  L  S  R  V  Y  V  H  R  V  L  V  L  *  A  V  G  R  *  H  E  T  Q  A  S  G  E  V  V  A  C  D  D  E  F  G  G  V  C  S  V  V  C  R  P  H  N  K  L  L  *  S  H  C  N  K  I  *  *  G  I  S  V  D  Y  E  N  L  *  F  H  M  N  V  L  *  G  N  H  G  G  F  R  *  I  Q  F  C  N  L  L  K  L  Y  Q  L  *  A  *  T  F  L  L  K  R  L  L  W  T  S  I  Y  Y  </first_frame>
            <second_frame>  T  A  V  G  P  T  A  G  F  W  A  V  P  A  R  P  D  F  G  Q  I  W  S  F  A  A  A  P  P  P  E  M  M  V  P  T  S  A  A  A  A  A  A  A  A  A  A  L  S  S  Q  S  S  R  F  F  Q  Q  Q  M  G  E  A  S  A  A  R  V  G  N  Y  L  P  M  T  Q  G  H  L  N  L  L  A  S  L  S  G  P  P  Q  P  S  S  G  R  R  D  D  D  G  R  *  R  Y  D  Y  C  Y  C  Y  C  Y  R  Y  C  C  *  Y  I  V  *  M  C  F  N  V  L  V  C  V  R  *  E  I  C  C  *  V  L  V  S  E  K  *  T  R  G  L  F  N  F  M  N  Y  C  *  D  *  V  C  L  L  Y  L  I  C  Q  E  F  T  F  T  E  F  W  C  C  K  L  W  D  D  N  T  K  H  K  H  Q  G  K  L  L  L  V  M  M  N  L  V  G  F  V  L  L  F  A  D  L  T  I  S  C  F  D  H  I  V  T  R  Y  N  R  G  S  V  W  T  M  K  T  C  S  S  T  *  M  F  C  K  E  T  M  A  V  S  V  E  F  N  S  V  I  C  *  N  Y  I  S  C  E  L  K  L  S  Y  S  K  D  C  Y  G  L  Q  F  I  T </second_frame>
            <third_frame>   L  L  W  V  P  Q  L  G  F  G  L  F  Q  L  G  L  I  L  V  K  F  G  A  L  R  R  H  R  H  L  K  *  W  C  Q  P  P  R  L  Q  Q  L  Q  P  R  Q  R  *  V  R  R  V  L  D  S  F  S  S  R  W  V  R  L  Q  L  L  E  L  G  I  T  Y  Q  *  L  K  G  I  S  I  C  *  L  L  Y  Q  V  L  H  S  P  L  P  G  E  E  T  T  T  D  V  E  D  M  I  I  V  I  V  I  V  I  V  I  V  V  N  I  S  Y  K  C  V  L  M  F  L  F  V  L  D  E  K  F  V  A  R  F  *  *  V  R  N  E  L  G  A  C  S  I  S  *  I  I  A  R  I  R  F  V  C  Y  I  S  F  V  K  S  L  R  S  P  S  F  G  V  V  S  C  G  T  I  T  R  N  T  S  I  R  G  S  C  C  L  *  *  *  I  W  W  G  L  F  C  C  L  Q  T  S  Q  *  A  A  L  I  T  L  *  Q  D  I  I  G  D  Q  C  G  L  *  K  P  V  V  P  H  E  C  F  V  R  K  P  W  R  F  P  L  N  S  I  L  *  F  V  E  T  I  S  V  V  S  L  N  F  P  T  Q  K  I  A  M  D  F  N  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79711" stop="80016"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAVGPTAGFWAVPARPDFGQIWSFAAAPPPEMMVPTSAAAAAAAAAALSSQSSRFFQQQMGEASAARVGNYLPMTQGHLNLLASLSGPPQPSSGRRDDDGR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80185" stop="80418"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCLLYLICQEFTFTEFWCCKLWDDNTKHKHQGKLLLVMMNLVGFVLLFADLTISCFDHIVTRYNRGSVWTMKTCSST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="84224" PGL_stop="86697"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84224" e_stop="84439"/>
            <exon e_start="85008" e_stop="85110"/>
            <exon e_start="85854" e_stop="85925"/>
            <exon e_start="86273" e_stop="86478"/>
            <exon e_start="86592" e_stop="86697"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.898" e_score="0.991"/>
          <exon-intron don_prob="0.983" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="84224" e_stop="84439" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.898">
            <gDNA_intron_boundary i_start="84440" i_stop="85007" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85008" e_stop="85110" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.971">
            <gDNA_intron_boundary i_start="85111" i_stop="85853" i_length="743"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85854" e_stop="85925" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="85926" i_stop="86272" i_length="347"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="86273" e_stop="86478" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="0.977" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86479" i_stop="86591" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="0.972">
            <gDNA_exon_boundary e_start="86592" e_stop="86697" e_length="106"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84224" stop="84439"/>
              <exon start="85008" stop="85110"/>
              <exon start="85854" stop="85925"/>
              <exon start="86273" stop="86478"/>
              <exon start="86592" stop="86697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338058" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGATTTTAGAACGTAGAAAAACAACAATTTTCAAAAGCTAATCCCAAATTCCAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTG : CTTTTTGTTTCTGATGAAATATTTACGCAACCAGTATTCCACTGCAACAACATCTCTGGATTTGTAGATCCG : GTTGTTCCAGATAATGAAAACAGTGCCTTGTACTCCACACATACATTCAAGATTTTGTTCAAGGATGGTGGTTGTGGGACTTTCGTGCCATTATTTTTCAACTTAATCGCCTCTGTGAGACGAGCTCAGCAACAGTCTGGGGTACAGCCACGGGCAGACCCTCTCCAAGCTGCACAAACTCCAGTTGATGAGATGATTAGACATGC : TTATGTCGATCCCAATGATCCAACGAAAATCTTCTTGCAGCAGCCTACTCCAGAGTCGCAACTTAGGCGTCGTTCATACCAATCACAACCTGCTTAAAACTCAATA</gDNA_template>
            <first_frame> *  D  F  R  T  *  K  N  N  N  F  Q  K  L  I  P  N  S  K  N  F  P  I  G  D  F  F  F  R  S  E  T  E  N  K  N  G  S  E  S  S  I  I  S  *  W  N  A  N  S  F  P  Q  *  I  V  R  P  I  *  T  W  C  *  V  *  G  *  Q  N  P  W  :  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F   : A  F  C  F  *  *  N  I  Y  A  T  S  I  P  L  Q  Q  H  L  W  I  C  R  S   : G  C  S  R  *  *  K  Q  C  L  V  L  H  T  Y  I  Q  D  F  V  Q  G  W  W  L  W  D  F  R  A  I  I  F  Q  L  N  R  L  C  E  T  S  S  A  T  V  W  G  T  A  T  G  R  P  S  P  S  C  T  N  S  S  *  *  D  D  *  T  C  :  L  C  R  S  Q  *  S  N  E  N  L  L  A  A  A  Y  S  R  V  A  T  *  A  S  F  I  P  I  T  T  C  L  K  L  N  </first_frame>
            <second_frame>  K  I  L  E  R  R  K  T  T  I  F  K  S  *  S  Q  I  P  K  I  F  R  S  E  I  F  F  S  D  Q  K  Q  K  I  K  M  A  V  N  P  Q  L  F  P  N  G  M  P  I  P  F  L  N  E  L  F  V  L  S  R  H  G  V  E  F  E  V  D  K  I  P  G :   V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  :  L  F  V  S  D  E  I  F  T  Q  P  V  F  H  C  N  N  I  S  G  F  V  D  P  :  V  V  P  D  N  E  N  S  A  L  Y  S  T  H  T  F  K  I  L  F  K  D  G  G  C  G  T  F  V  P  L  F  F  N  L  I  A  S  V  R  R  A  Q  Q  Q  S  G  V  Q  P  R  A  D  P  L  Q  A  A  Q  T  P  V  D  E  M  I  R  H  A :   Y  V  D  P  N  D  P  T  K  I  F  L  Q  Q  P  T  P  E  S  Q  L  R  R  R  S  Y  Q  S  Q  P  A  *  N  S  I </second_frame>
            <third_frame>   R  F  *  N  V  E  K  Q  Q  F  S  K  A  N  P  K  F  Q  K  F  S  D  R  R  F  F  F  P  I  R  N  R  K  *  K  W  Q  *  I  L  N  Y  F  L  M  E  C  Q  F  L  S  S  M  N  C  S  S  Y  L  D  M  V  L  S  L  R  L  T  K  S  L   : V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  C :   F  L  F  L  M  K  Y  L  R  N  Q  Y  S  T  A  T  T  S  L  D  L  *  I  R :   L  F  Q  I  M  K  T  V  P  C  T  P  H  I  H  S  R  F  C  S  R  M  V  V  V  G  L  S  C  H  Y  F  S  T  *  S  P  L  *  D  E  L  S  N  S  L  G  Y  S  H  G  Q  T  L  S  K  L  H  K  L  Q  L  M  R  *  L  D  M   : L  M  S  I  P  M  I  Q  R  K  S  S  C  S  S  L  L  Q  S  R  N  L  G  V  V  H  T  N  H  N  L  L  K  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84267" stop="84439"/>
                    <exon start="85008" stop="85110"/>
                    <exon start="85854" stop="85925"/>
                    <exon start="86273" stop="86478"/>
                    <exon start="86592" stop="86688"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQIPKIFRSEIFFSDQKQKIKMAVNPQLFPNGMPIPFLNELFVLSRHGVEFEVDKIPGVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLLFVSDEIFTQPVFHCNNISGFVDPVVPDNENSALYSTHTFKILFKDGGCGTFVPLFFNLIASVRRAQQQSGVQPRADPLQAAQTPVDEMIRHAYVDPNDPTKIFLQQPTPESQLRRRSYQSQPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84277" e_stop="84439"/>
            <exon e_start="85008" e_stop="85865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.898" e_score="0.963"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="84277" e_stop="84439" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.898">
            <gDNA_intron_boundary i_start="84440" i_stop="85007" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="85008" e_stop="85865" e_length="858"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84277" stop="84439"/>
              <exon start="85008" stop="85865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324667" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAATTTTCCGATCGGAGATTTTTTTTTCCGATCAGAAACAGAAAATAAAAATGGCAGTGAATCCTCAATTATTTCCTAATGGAATGCCAATTCCTTTCCTCAATGAATTGTTCGTCCTATCTAGACATGGTGTTGAGTTTGAGGTTGACAAAATCCCTGG : TGTAGGAAAAACAAGAACAAGAGGTACAATCTACTTGTCGAATATTCGGATGGTCTTTGTTGCAAAGATGCCTGTGGATTTCATTGCTTTTGATATGCCTTTGGTATGTTATACTTCTATGTCTTTTTACCGTCCTCCGATTTTGCAAACACCACATGCTAACCAACTCTATTCACTCATGACTGGTATAGTTTTTCTGTGGATCAGAGAAGAAAATCGCGAAAACTCTCTTTTGTTACTCTTACTATTATATTAACAAGTTACTATGGCGCTCCTTCAGTATCTGCTGTAACTAGACCAACATATGCATAATGTGCAATTCAGAATGGCGATTCCAAGTATAACGATTAGCGATATTTCTTTTGTTGCTTCTTTTTGAGGCTGAACAAAACTTTGTGTATGATATGCTTCTGAATCCTGTAGTTTTGTTCTCTCTTTGAAATACATTTTAGAAAGTCGTATTTTACTATGTGCAATTCAGAATGGCGCGTAGTAGAGCAGATATATCACTTTGGTCAAATACGATCCTTCTCCTATGAAACTGTACTGTTTGTTTCTAAAGCTTTGACATGTTAATTGAATGGTATTATGACATGATTTATATCTGATTTGTATATTAAGCACAACATTGCTAGATACAACATCTGCTAGGAAGCATGTTATGGCATATATTGTTCGGATATTTGTTAAGATGCATGACATGAATTCGTGTTCATCTGTTCTATGTTTTTGTTCAGAGAAATAATCTGGTAAGTTGGTGACTTTGCTGAGCAAGAAGTTACAAAACTGAGAAATGTAAGCTACATTTGCTTTGACAAAGTTTATTTACCTTTTTTCATTCTGCAGCTTTTTGTTTCT</gDNA_template>
            <first_frame> Q  K  F  S  D  R  R  F  F  F  P  I  R  N  R  K  *  K  W  Q  *  I  L  N  Y  F  L  M  E  C  Q  F  L  S  S  M  N  C  S  S  Y  L  D  M  V  L  S  L  R  L  T  K  S  L   : V  *  E  K  Q  E  Q  E  V  Q  S  T  C  R  I  F  G  W  S  L  L  Q  R  C  L  W  I  S  L  L  L  I  C  L  W  Y  V  I  L  L  C  L  F  T  V  L  R  F  C  K  H  H  M  L  T  N  S  I  H  S  *  L  V  *  F  F  C  G  S  E  K  K  I  A  K  T  L  F  C  Y  S  Y  Y  Y  I  N  K  L  L  W  R  S  F  S  I  C  C  N  *  T  N  I  C  I  M  C  N  S  E  W  R  F  Q  V  *  R  L  A  I  F  L  L  L  L  L  F  E  A  E  Q  N  F  V  Y  D  M  L  L  N  P  V  V  L  F  S  L  *  N  T  F  *  K  V  V  F  Y  Y  V  Q  F  R  M  A  R  S  R  A  D  I  S  L  W  S  N  T  I  L  L  L  *  N  C  T  V  C  F  *  S  F  D  M  L  I  E  W  Y  Y  D  M  I  Y  I  *  F  V  Y  *  A  Q  H  C  *  I  Q  H  L  L  G  S  M  L  W  H  I  L  F  G  Y  L  L  R  C  M  T  *  I  R  V  H  L  F  Y  V  F  V  Q  R  N  N  L  V  S  W  *  L  C  *  A  R  S  Y  K  T  E  K  C  K  L  H  L  L  *  Q  S  L  F  T  F  F  H  S  A  A  F  C  F  </first_frame>
            <second_frame>  K  N  F  P  I  G  D  F  F  F  R  S  E  T  E  N  K  N  G  S  E  S  S  I  I  S  *  W  N  A  N  S  F  P  Q  *  I  V  R  P  I  *  T  W  C  *  V  *  G  *  Q  N  P  W  :  C  R  K  N  K  N  K  R  Y  N  L  L  V  E  Y  S  D  G  L  C  C  K  D  A  C  G  F  H  C  F  *  Y  A  F  G  M  L  Y  F  Y  V  F  L  P  S  S  D  F  A  N  T  T  C  *  P  T  L  F  T  H  D  W  Y  S  F  S  V  D  Q  R  R  K  S  R  K  L  S  F  V  T  L  T  I  I  L  T  S  Y  Y  G  A  P  S  V  S  A  V  T  R  P  T  Y  A  *  C  A  I  Q  N  G  D  S  K  Y  N  D  *  R  Y  F  F  C  C  F  F  L  R  L  N  K  T  L  C  M  I  C  F  *  I  L  *  F  C  S  L  F  E  I  H  F  R  K  S  Y  F  T  M  C  N  S  E  W  R  V  V  E  Q  I  Y  H  F  G  Q  I  R  S  F  S  Y  E  T  V  L  F  V  S  K  A  L  T  C  *  L  N  G  I  M  T  *  F  I  S  D  L  Y  I  K  H  N  I  A  R  Y  N  I  C  *  E  A  C  Y  G  I  Y  C  S  D  I  C  *  D  A  *  H  E  F  V  F  I  C  S  M  F  L  F  R  E  I  I  W  *  V  G  D  F  A  E  Q  E  V  T  K  L  R  N  V  S  Y  I  C  F  D  K  V  Y  L  P  F  F  I  L  Q  L  F  V  S </second_frame>
            <third_frame>   K  I  F  R  S  E  I  F  F  S  D  Q  K  Q  K  I  K  M  A  V  N  P  Q  L  F  P  N  G  M  P  I  P  F  L  N  E  L  F  V  L  S  R  H  G  V  E  F  E  V  D  K  I  P  G :   V  G  K  T  R  T  R  G  T  I  Y  L  S  N  I  R  M  V  F  V  A  K  M  P  V  D  F  I  A  F  D  M  P  L  V  C  Y  T  S  M  S  F  Y  R  P  P  I  L  Q  T  P  H  A  N  Q  L  Y  S  L  M  T  G  I  V  F  L  W  I  R  E  E  N  R  E  N  S  L  L  L  L  L  L  L  Y  *  Q  V  T  M  A  L  L  Q  Y  L  L  *  L  D  Q  H  M  H  N  V  Q  F  R  M  A  I  P  S  I  T  I  S  D  I  S  F  V  A  S  F  *  G  *  T  K  L  C  V  *  Y  A  S  E  S  C  S  F  V  L  S  L  K  Y  I  L  E  S  R  I  L  L  C  A  I  Q  N  G  A  *  *  S  R  Y  I  T  L  V  K  Y  D  P  S  P  M  K  L  Y  C  L  F  L  K  L  *  H  V  N  *  M  V  L  *  H  D  L  Y  L  I  C  I  L  S  T  T  L  L  D  T  T  S  A  R  K  H  V  M  A  Y  I  V  R  I  F  V  K  M  H  D  M  N  S  C  S  S  V  L  C  F  C  S  E  K  *  S  G  K  L  V  T  L  L  S  K  K  L  Q  N  *  E  M  *  A  T  F  A  L  T  K  F  I  Y  L  F  S  F  C  S  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84279" stop="84439"/>
                    <exon start="85008" stop="85263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIFRSEIFFSDQKQKIKMAVNPQLFPNGMPIPFLNELFVLSRHGVEFEVDKIPGVGKTRTRGTIYLSNIRMVFVAKMPVDFIAFDMPLVCYTSMSFYRPPILQTPHANQLYSLMTGIVFLWIREENRENSLLLLLLLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="90861" PGL_stop="87000"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90861" e_stop="90574"/>
            <exon e_start="89207" e_stop="89034"/>
            <exon e_start="88261" e_stop="87000"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.993"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="90861" e_stop="90574" e_length="288"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90573" i_stop="89208" i_length="1366"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89207" e_stop="89034" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="89033" i_stop="88262" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="88261" e_stop="87000" e_length="1262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90861" stop="90574"/>
              <exon start="89207" stop="89034"/>
              <exon start="88261" stop="87000"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315915" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAAAAAAAAATTAGAAGAAAACCCATTGCAGCACTAATTCAAGAATACTCAGAGAGAGAAGAGGAAGAGTTGGTAACAATGGCTGCTGTAAATGGTGTAGGACTTTCATGGCCATCAAAATTGACCAAAAATCAAACACCCAAATGGGGTTTTTCTCCATCTCACCGTCGATGCAACCCATCTTCTTCTTCTTCTTCTGCAACCATTAGAATGACAGCCTCAGTTGATGAAAAGAAGAAAACGTTCACACTTGAGAAGTCTGAAGAAGCTTTCAGCAAAGCCAAG : GAGTTGATGCCAGGAGGTGTAAATTCCCCTGTCCGTGCTTTCAAGTCAGTTGGCGGACAACCTATCATTATTGACTCCGTGAAGGGCTCTCGTATGCGGGACATAGATGGTAACGAGTACATTGACTATGTCGGATCATGGGGACCAGCTATAATTGGTCATGCGGATGATGAG : GTGCTAGCAGCATTGGCTGAAACAATGAAGAAAGGAACGAGTTTCGGTGCTCCATGTCTCCTTGAAAATACACTGGCAGAGATGGTTATTTCAGCTGTTCCAAGCATAGAAATGGTTCGATTTGTCAACTCTGGTACAGAAGCATGTATGGGAGTACTACGGCTGGCTCGTGCTTTCACTTGCCGTCCTAAGATCATCAAATTCGAGGGTTGTTACCATGGTCATGCTGATCCATTTCTTGTTAAAGCAGGCAGTGGCGTTGCCACCCTCGGTCTTCCTGACTCTCCGGGAGTTCCAAAGGCAGCTACTATCGATACTCTGACCGCACCTTACAATGACATTTCTGCTGTTGAGAGCCTCTTTGAGGAGCACAAAGGAGAAATAGCCGCTGTAATTCTCGAGCCTGTAGTCGGAAATGCTGGCTTCATCCCACCTAAGCTAGAATTTCTTGCTGCCATTCGCAAGATCACCAAAGAGAATGATGCACTTCTTATTTTCGACGAAGTCATGACTGGATTTAGATTGGCATATGGCGGTGCTCAAGAGTATTTTGGAATAACTCCAGATTTGACAACACTCGGGAAGATTATTGGCGGTGGCTTGCCAGTAGGTGCTTACGGAGGAAGACGGGATATAATGGAGATGGTAGCACCTGCAGGACCAATGTATCAAGCTGGCACCCTAAGTGGAAACCCATTGGCCATGACTGCTGGAATTCACACGCTTAAGCGGTTACAAGGACAGGGAACATACGAACACTTGGACAAGATCACCGCGGAACTTACACAAGGAATCTTGGATGCTGGAAAGAAGACCGGTCATGCAATGTGTGGTGGCTCCATAAGGGGGATGTTTGGCTTCTTCTTCGCGGATGGTCCCATCTATAACTTTTCGGATGCAAAGAAGAGTGATACAGAAAAATTTGGCAGATTCTATAGAGGGATGCTGGAGGAAGGTGTTTACTTTGCACCATCACAGTTTGAGGCTGGATTTACTAGCTTAGCACACACTCCAGAGGATATTCAAAGGACTGTAGCTGCAGCTGAAAAAGTTTTGAAGCAAATTTAACCACTATATTTCTTTTTGTATGCTAGATGGAGAGATTTTCCTTTTTAAGTTTTTGTTCTGTTGAATAAAAGGTGATTTTGTAACATATTGTTTATTCAGAAACATGCTGCATTATTTTACCTCCTGTATTTAAAGCATTTTTTGGTCACTTGAGTACATCTGTACTATATATTAACAAGAGGAGTCTTGGAGTG</gDNA_template>
            <first_frame> H  K  K  K  I  R  R  K  P  I  A  A  L  I  Q  E  Y  S  E  R  E  E  E  E  L  V  T  M  A  A  V  N  G  V  G  L  S  W  P  S  K  L  T  K  N  Q  T  P  K  W  G  F  S  P  S  H  R  R  C  N  P  S  S  S  S  S  S  A  T  I  R  M  T  A  S  V  D  E  K  K  K  T  F  T  L  E  K  S  E  E  A  F  S  K  A  K  :  E  L  M  P  G  G  V  N  S  P  V  R  A  F  K  S  V  G  G  Q  P  I  I  I  D  S  V  K  G  S  R  M  R  D  I  D  G  N  E  Y  I  D  Y  V  G  S  W  G  P  A  I  I  G  H  A  D  D  E  :  V  L  A  A  L  A  E  T  M  K  K  G  T  S  F  G  A  P  C  L  L  E  N  T  L  A  E  M  V  I  S  A  V  P  S  I  E  M  V  R  F  V  N  S  G  T  E  A  C  M  G  V  L  R  L  A  R  A  F  T  C  R  P  K  I  I  K  F  E  G  C  Y  H  G  H  A  D  P  F  L  V  K  A  G  S  G  V  A  T  L  G  L  P  D  S  P  G  V  P  K  A  A  T  I  D  T  L  T  A  P  Y  N  D  I  S  A  V  E  S  L  F  E  E  H  K  G  E  I  A  A  V  I  L  E  P  V  V  G  N  A  G  F  I  P  P  K  L  E  F  L  A  A  I  R  K  I  T  K  E  N  D  A  L  L  I  F  D  E  V  M  T  G  F  R  L  A  Y  G  G  A  Q  E  Y  F  G  I  T  P  D  L  T  T  L  G  K  I  I  G  G  G  L  P  V  G  A  Y  G  G  R  R  D  I  M  E  M  V  A  P  A  G  P  M  Y  Q  A  G  T  L  S  G  N  P  L  A  M  T  A  G  I  H  T  L  K  R  L  Q  G  Q  G  T  Y  E  H  L  D  K  I  T  A  E  L  T  Q  G  I  L  D  A  G  K  K  T  G  H  A  M  C  G  G  S  I  R  G  M  F  G  F  F  F  A  D  G  P  I  Y  N  F  S  D  A  K  K  S  D  T  E  K  F  G  R  F  Y  R  G  M  L  E  E  G  V  Y  F  A  P  S  Q  F  E  A  G  F  T  S  L  A  H  T  P  E  D  I  Q  R  T  V  A  A  A  E  K  V  L  K  Q  I  *  P  L  Y  F  F  L  Y  A  R  W  R  D  F  P  F  *  V  F  V  L  L  N  K  R  *  F  C  N  I  L  F  I  Q  K  H  A  A  L  F  Y  L  L  Y  L  K  H  F  L  V  T  *  V  H  L  Y  Y  I  L  T  R  G  V  L  E   </first_frame>
            <second_frame>  T  K  K  K  L  E  E  N  P  L  Q  H  *  F  K  N  T  Q  R  E  K  R  K  S  W  *  Q  W  L  L  *  M  V  *  D  F  H  G  H  Q  N  *  P  K  I  K  H  P  N  G  V  F  L  H  L  T  V  D  A  T  H  L  L  L  L  L  L  Q  P  L  E  *  Q  P  Q  L  M  K  R  R  K  R  S  H  L  R  S  L  K  K  L  S  A  K  P  R :   S  *  C  Q  E  V  *  I  P  L  S  V  L  S  S  Q  L  A  D  N  L  S  L  L  T  P  *  R  A  L  V  C  G  T  *  M  V  T  S  T  L  T  M  S  D  H  G  D  Q  L  *  L  V  M  R  M  M  R :   C  *  Q  H  W  L  K  Q  *  R  K  E  R  V  S  V  L  H  V  S  L  K  I  H  W  Q  R  W  L  F  Q  L  F  Q  A  *  K  W  F  D  L  S  T  L  V  Q  K  H  V  W  E  Y  Y  G  W  L  V  L  S  L  A  V  L  R  S  S  N  S  R  V  V  T  M  V  M  L  I  H  F  L  L  K  Q  A  V  A  L  P  P  S  V  F  L  T  L  R  E  F  Q  R  Q  L  L  S  I  L  *  P  H  L  T  M  T  F  L  L  L  R  A  S  L  R  S  T  K  E  K  *  P  L  *  F  S  S  L  *  S  E  M  L  A  S  S  H  L  S  *  N  F  L  L  P  F  A  R  S  P  K  R  M  M  H  F  L  F  S  T  K  S  *  L  D  L  D  W  H  M  A  V  L  K  S  I  L  E  *  L  Q  I  *  Q  H  S  G  R  L  L  A  V  A  C  Q  *  V  L  T  E  E  D  G  I  *  W  R  W  *  H  L  Q  D  Q  C  I  K  L  A  P  *  V  E  T  H  W  P  *  L  L  E  F  T  R  L  S  G  Y  K  D  R  E  H  T  N  T  W  T  R  S  P  R  N  L  H  K  E  S  W  M  L  E  R  R  P  V  M  Q  C  V  V  A  P  *  G  G  C  L  A  S  S  S  R  M  V  P  S  I  T  F  R  M  Q  R  R  V  I  Q  K  N  L  A  D  S  I  E  G  C  W  R  K  V  F  T  L  H  H  H  S  L  R  L  D  L  L  A  *  H  T  L  Q  R  I  F  K  G  L  *  L  Q  L  K  K  F  *  S  K  F  N  H  Y  I  S  F  C  M  L  D  G  E  I  F  L  F  K  F  L  F  C  *  I  K  G  D  F  V  T  Y  C  L  F  R  N  M  L  H  Y  F  T  S  C  I  *  S  I  F  W  S  L  E  Y  I  C  T  I  Y  *  Q  E  E  S  W  S  </second_frame>
            <third_frame>   Q  K  K  N  *  K  K  T  H  C  S  T  N  S  R  I  L  R  E  R  R  G  R  V  G  N  N  G  C  C  K  W  C  R  T  F  M  A  I  K  I  D  Q  K  S  N  T  Q  M  G  F  F  S  I  S  P  S  M  Q  P  I  F  F  F  F  F  C  N  H  *  N  D  S  L  S  *  *  K  E  E  N  V  H  T  *  E  V  *  R  S  F  Q  Q  S  Q   : G  V  D  A  R  R  C  K  F  P  C  P  C  F  Q  V  S  W  R  T  T  Y  H  Y  *  L  R  E  G  L  S  Y  A  G  H  R  W  *  R  V  H  *  L  C  R  I  M  G  T  S  Y  N  W  S  C  G  *  *   : G  A  S  S  I  G  *  N  N  E  E  R  N  E  F  R  C  S  M  S  P  *  K  Y  T  G  R  D  G  Y  F  S  C  S  K  H  R  N  G  S  I  C  Q  L  W  Y  R  S  M  Y  G  S  T  T  A  G  S  C  F  H  L  P  S  *  D  H  Q  I  R  G  L  L  P  W  S  C  *  S  I  S  C  *  S  R  Q  W  R  C  H  P  R  S  S  *  L  S  G  S  S  K  G  S  Y  Y  R  Y  S  D  R  T  L  Q  *  H  F  C  C  *  E  P  L  *  G  A  Q  R  R  N  S  R  C  N  S  R  A  C  S  R  K  C  W  L  H  P  T  *  A  R  I  S  C  C  H  S  Q  D  H  Q  R  E  *  C  T  S  Y  F  R  R  S  H  D  W  I  *  I  G  I  W  R  C  S  R  V  F  W  N  N  S  R  F  D  N  T  R  E  D  Y  W  R  W  L  A  S  R  C  L  R  R  K  T  G  Y  N  G  D  G  S  T  C  R  T  N  V  S  S  W  H  P  K  W  K  P  I  G  H  D  C  W  N  S  H  A  *  A  V  T  R  T  G  N  I  R  T  L  G  Q  D  H  R  G  T  Y  T  R  N  L  G  C  W  K  E  D  R  S  C  N  V  W  W  L  H  K  G  D  V  W  L  L  L  R  G  W  S  H  L  *  L  F  G  C  K  E  E  *  Y  R  K  I  W  Q  I  L  *  R  D  A  G  G  R  C  L  L  C  T  I  T  V  *  G  W  I  Y  *  L  S  T  H  S  R  G  Y  S  K  D  C  S  C  S  *  K  S  F  E  A  N  L  T  T  I  F  L  F  V  C  *  M  E  R  F  S  F  L  S  F  C  S  V  E  *  K  V  I  L  *  H  I  V  Y  S  E  T  C  C  I  I  L  P  P  V  F  K  A  F  F  G  H  L  S  T  S  V  L  Y  I  N  K  R  S  L  G  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0127E11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90861" stop="90574"/>
                    <exon start="89207" stop="89034"/>
                    <exon start="88261" stop="87194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1527</number_coding_nucleotides>
                  <number_encoded_amino_acids>509</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HKKKIRRKPIAALIQEYSEREEEELVTMAAVNGVGLSWPSKLTKNQTPKWGFSPSHRRCNPSSSSSSATIRMTASVDEKKKTFTLEKSEEAFSKAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGSRMRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTCRPKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATIDTLTAPYNDISAVESLFEEHKGEIAAVILEPVVGNAGFIPPKLEFLAAIRKITKENDALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQFEAGFTSLAHTPEDIQRTVAAAEKVLKQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 21 chains have been computed
$ 
$ memory statistics:
$ 29928 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 1995 bytes was the average size of a spliced alignment
$ 17208 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1720 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 23 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 04:08:30
-->
