<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 17:33:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257183" ref_strand="+" ref_description="SGN-E257183 [cLEG-46-L19]">
      <seq>ctgagtcaaagttgtttgttatgttccattctactacttgtgtgacagatctacttttgcagtgtcaaacataacagtggaggctgatggttgaaatttccgaacttccaattctcttttgtgtgtccctctagagaataatcttgattttatttcaattcatctgtcgtggtcctccattttcagttggtcgttaactagttctgttgcctcttctgcatggttcatccctttctattcaaggcccattgttcattgcaaacctttctcggctgttgctctagaagagtttgagttgatgaacatttttttgctagtcattatgtgaaagtggttgtgttttaattcttgttgtaaatgatgtttgtttgaattgttttctttcaaataaataaccagatattgtatgtgcattgttattgtatctatctttcagccttacaagcaggttgcagttattatgtgagcagctggtgcaagcattttccatatgttgaggaatctcttgtggtcgacatcaaaacatgatgtgtatctcatgcaaaactactctgtgatgcactggtcctcacttcttggaaagggggaagaagtgcttaatgttgctaggccattgacgcccactatgaaataccctggatcagcgtctcaaacacttccccgagtgcagatcagcactatggctgttaaagatggtttgctggctgctgggggtttccaaggggagcttatctgtaagtatttaaaccaacctggagttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="3016" stop="1"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2716" g_stop="2224" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2223" i_stop="652" i_length="1572">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="651" g_stop="517" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="628" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="437" g_stop="327" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="739" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="326" i_stop="247" i_length="80">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="246" g_stop="221" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="765" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E257183" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2716" e_stop="2224"/>
          <exon e_start="651" e_stop="517"/>
          <exon e_start="437" e_stop="327"/>
          <exon e_start="246" e_stop="221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATGGTATGATAGGGAATAATCTGTGAATTTAAGAGGCCTTTATGGTATTTCTTCTGTTAAGTTTGAGCTAACTTGTTAATGGCAGCAAGTATGTATTAAAATGTTTGTGTGTTGCTTCATCATTTGAATAGTTGGATGGTCATCTCTTAATCATTTGAATAGTTGGATGGTCATCTCTTCTTCATTTGAATAGTTGGATGGTCATCTCTTCTGTTGAAGATGGTTGTAGTCATTATCTTGTTTATGGTTATCTCTTCTGTTGGAGATGGTTGCACTTTTTTTCTCTCTGTTTGTTAGAGATGGATTCTGCACTAGGCTCTCTTTAAGTACTTCCACTTGTGGGTTGTGAATTCTGATTGCTGTGTCACAGTTACTTCACGATTTTGATAATTATACGACTTCTTTGGTACATCTTCTCTGGTAGCTGTCATCTGATACGGTCTCCATCAGAAAGAGAAGATTTTCTGGCAATTGAGCTCTTGCATAATACGAGTAAGATAGTTGGCTTGGATTACGTTTGTCATTCATTTGAGAGTTCGTGACTTCATTTTGAAATTTCCGGCGACTTTATTGTGTGTTCTTCTGTCCTTGATCAATCACACTTCCAAACTTAGGAATTTAATTGCTGACTTTCTCTCTTTGCTATGTGGTGTTGTGCCCTGAATCAAGCGCGTTGGGAACTTGGGTGCTCAATTACTTATCTACTGCTCCCAAGAGTTATCCTCTCTTCCCTATATTCCTTGGTCCATTCCACTCTTTGGAATAGAATATCGGAGAACCTAGCACTTGTATTTGTGATCCATCTATTACGCTATTGAATCCCGTTGACGTCTTTTGAAATATGTACTGTTCATTGTTTGGGTTTTGCTGCCTTGTATTGATTATGTACAATTTCCAAGGTGGTGAGGCATCCCTTTAGAGTCTCTGTGGCGTTCTCATTTTTTTCTGCGTCATTTTTCCTCCTGTCATCATTGCGGTTTACATTTCTGACTTCTCTTTCACAGGTTTCTTTTCTGCTTCGATCTGTATAATAGTGTAGGAAAGTGAACTGTTTTTTAGCTGCCCAATTTGCTTTCCAGGAAACCTGCTCTATTGCAGATGATGATGTGTAACTATTAGTGGTAGATTGTTCAGTTGTGGACTTGTAGAAAGCTAGCAGCTGTTCCTTCGCTAGCTTATGCATCATTGACCACTAATATTTAGGACTAGCGACATATTGACCTACGACTTGACTTTGTATTAGGCATTGCCCGACTTTGCAGAAGGAGAGGGGGGCGGTTGATTTTTGTGGTCCATTCTGCAATACACTGTGTAGGTTATTTATTCCCAATTTACTGTTCGCTCAGCTTGTAATATGGTTGAGACGGGGAACGAGAACTATCTGAAACCTGAAGTTTATGAGATTGCATGTCTATCATTTTTGGAAAAAAAAATTATGAGCTTTTTCTGCAAATTACAGCATTCTTAAGTTCTGTTTTTGCTTTATTTGATCTCGTGTGACGTTGTTTGCTTCATAGGAAACTGGTATGCTGTCTAGTGATGAGTGTAACAACCCGTTCTATATTTTTGTTTCAGTTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATGGTTAGCAGTACTTTTTGTCTCCCTTAAATATACTTAAATGACTTTTGACTATCAAGAATTAACTCTCTGGTTTGTGCAGAAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGGTTTCCAAGGGGAGCTTATCTGTAAGGTAGGATGACAATGTAAATTCTGAGCATATATGTACTTTTTCTTAAGTAATGCATACTGATAGGATTTTAACTCGTGCAGTATTTAAACCAACCTGGAGTTGCATT</genome_strand>
        <mrna_strand>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATG...............................................................................AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAAAGATGGTTTGCTGGCTGCTGGGGGTTTCCAAGGGGAGCTTATCTGTAAG................................................................................TATTTAAACCAACCTGGAGTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708780" ref_strand="+" ref_description="SGN-E708780 [FA36DA05]">
      <seq>catctatacactgtttctcactaattttcaattagttttcacagtttaattatctgaagaactccggagatttttttccggcgtgaggtggttactttttccatttgtttctcgtgaaaatctctcaacttccgatactttcaaggataatggctctctctcaaaatcaggagttggagtatatggtggatgagtactatgacactactgattttgatgacagcacttttgggggtgaatcgccgcgaagtactgacccggatatctctgcagactcggaatttgaggacgattttgaagtgagaaagtcaaagctggatacatcagctatagaagctagaaatggcaaggatatacagggaataccttgggaaaggcttaattttaccagagacaagtaccgcgagacgaggttgaagcagtataagaactacgagagcctgtctcgctctcgtgaagatcttgaaaaggagtgcaaggaagtaggaaaaggacacagcttctacgacttccagttcaatacaaggctcgtcaaatcaactatcgtgcactttcagttgaggaatctcttgtggtcgacatcaaaacatgatgtgtatctcatgcaaaactactctgtgatgcactggtcctcacttcttggaaagggggaagaagtgcttaatgttgctaggccattcccgcccaccatgaaataccctggatcagcgtctcaaacacttccccgagtgcagatcagcactatggctgttttaaatggtttgctggctgctggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="5680" stop="52"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5381" g_stop="5237" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5236" i_stop="4454" i_length="783">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4453" g_stop="4297" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="302" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4296" i_stop="4205" i_length="92">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4204" g_stop="4037" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="470" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4036" i_stop="3942" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3941" g_stop="3855" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="557" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3854" i_stop="652" i_length="3203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="651" g_stop="517" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="692" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="437" g_stop="352" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="778" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E708780" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5381" e_stop="5237"/>
          <exon e_start="4453" e_stop="4297"/>
          <exon e_start="4204" e_stop="4037"/>
          <exon e_start="3941" e_stop="3855"/>
          <exon e_start="651" e_stop="517"/>
          <exon e_start="437" e_stop="352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTATACACTGTTTCTCACTAATTTTCAATTAGTTTTCACAGTTTAATTATCTGAAGAACTCCGGAGATTTTTTTCCGGCGTGAGGTGGTTACTTTTTCCATTTGTTTCTCGTGAAAATCTCTCAACTTCCGATACTTTCAAGGTTCGGTTCTCAAACTTCCTTTTCCGTCAAATGTTTCCTTCTAGAATGTACTGTAAAACGACGTTTTACACTTTCTCTTTTTCAATTTATGTTGTTTAAGTTTCGGTTTTGTATGAGAAATTGATGAAATTTCAGTTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAAATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTTGTTTAATTTCCTGGCAAGTGAAGACTTGTCAAATTAGTTCATGAATTCTTATTCATAATATATGTTCGGGTGCTTATTAAGATTTGTTTTGTTGATTTAGGATAATGGCTCTCTCTCAAAATCAGGAGTTGGAGTATATGGTGGATGAGTACTATGACACTACTGATTTTGATGACAGCACTTTTGGGGGTGAATCGCCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTGGTACTGGGCAGATTTAATTTTTTTGACATGTTACTGGTGTCATCTTCATCCTTAGTTTAACAATGTTGACTTACTGCTCTTCGGTTCTACAGAGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAGGTTTTTCTTCACACTCTTTTCCATTCCCATGTATTGGAATGTTCTCGTATATTTGGCTAGGCTCAACTCTAAAAGTTTATTTCCTCACCATTAAGGAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAGGTAATATAGATTTTTTAGCCTTTTCTTGTTTGGATTTATGTTAACCTTTGATCAAGAAAATCGTGGACTGGTCTGCCTCCCTGTAGTTCTTTGTGATTGATTTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTTTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAACAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGACAGCTTTCTGGAATAATAATTCACCAGATCCAATATGTTTGAGAGATGCCTCTTATGGCCTCCAAGCTGGTGAATTTGCATCTGATGTAAATTTAGTGTTACTATTTCTTGATGCAGCTAATTTCTTTTTCTTCTTCTGTTCAGAAATCCAAAAGATATTGCCGAATTTGACTTTTGCCAGTTTCTTCTAGTAATGCTATTCTGGCTACATGACGAAGCAAACAAGATTTACATAGAAACCGTTCTTATATTCTGCAATTACTTTTTAACTCATTTTTTTAGTTAGCAGTTTAGTCTGCCTCGATTGATGTATTGATCAGAGAGCAGTGTTCACAATATCCTTTTTTATGCAGATTACAAACATTTAAAGAAGTGTCTTATGGAACTTTGTAATTGTAGAAGATCCTTGTTTTGGAACTTCACTCTTGAATATTTCATCATGAATCAGCTGAATGTATTTTGAGGACTGGGTTTTGATATGGAAGCTTAGGAGTGAGGACAGAACCTGGCTTATGCTGGATTTGTAGTTTGTCGTTTTTTGCTGACATAGAATATAGTTCTGACTTCTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATGGTATGATAGGGAATAATCTGTGAATTTAAGAGGCCTTTATGGTATTTCTTCTGTTAAGTTTGAGCTAACTTGTTAATGGCAGCAAGTATGTATTAAAATGTTTGTGTGTTGCTTCATCATTTGAATAGTTGGATGGTCATCTCTTAATCATTTGAATAGTTGGATGGTCATCTCTTCTTCATTTGAATAGTTGGATGGTCATCTCTTCTGTTGAAGATGGTTGTAGTCATTATCTTGTTTATGGTTATCTCTTCTGTTGGAGATGGTTGCACTTTTTTTCTCTCTGTTTGTTAGAGATGGATTCTGCACTAGGCTCTCTTTAAGTACTTCCACTTGTGGGTTGTGAATTCTGATTGCTGTGTCACAGTTACTTCACGATTTTGATAATTATACGACTTCTTTGGTACATCTTCTCTGGTAGCTGTCATCTGATACGGTCTCCATCAGAAAGAGAAGATTTTCTGGCAATTGAGCTCTTGCATAATACGAGTAAGATAGTTGGCTTGGATTACGTTTGTCATTCATTTGAGAGTTCGTGACTTCATTTTGAAATTTCCGGCGACTTTATTGTGTGTTCTTCTGTCCTTGATCAATCACACTTCCAAACTTAGGAATTTAATTGCTGACTTTCTCTCTTTGCTATGTGGTGTTGTGCCCTGAATCAAGCGCGTTGGGAACTTGGGTGCTCAATTACTTATCTACTGCTCCCAAGAGTTATCCTCTCTTCCCTATATTCCTTGGTCCATTCCACTCTTTGGAATAGAATATCGGAGAACCTAGCACTTGTATTTGTGATCCATCTATTACGCTATTGAATCCCGTTGACGTCTTTTGAAATATGTACTGTTCATTGTTTGGGTTTTGCTGCCTTGTATTGATTATGTACAATTTCCAAGGTGGTGAGGCATCCCTTTAGAGTCTCTGTGGCGTTCTCATTTTTTTCTGCGTCATTTTTCCTCCTGTCATCATTGCGGTTTACATTTCTGACTTCTCTTTCACAGGTTTCTTTTCTGCTTCGATCTGTATAATAGTGTAGGAAAGTGAACTGTTTTTTAGCTGCCCAATTTGCTTTCCAGGAAACCTGCTCTATTGCAGATGATGATGTGTAACTATTAGTGGTAGATTGTTCAGTTGTGGACTTGTAGAAAGCTAGCAGCTGTTCCTTCGCTAGCTTATGCATCATTGACCACTAATATTTAGGACTAGCGACATATTGACCTACGACTTGACTTTGTATTAGGCATTGCCCGACTTTGCAGAAGGAGAGGGGGGCGGTTGATTTTTGTGGTCCATTCTGCAATACACTGTGTAGGTTATTTATTCCCAATTTACTGTTCGCTCAGCTTGTAATATGGTTGAGACGGGGAACGAGAACTATCTGAAACCTGAAGTTTATGAGATTGCATGTCTATCATTTTTGGAAAAAAAAATTATGAGCTTTTTCTGCAAATTACAGCATTCTTAAGTTCTGTTTTTGCTTTATTTGATCTCGTGTGACGTTGTTTGCTTCATAGGAAACTGGTATGCTGTCTAGTGATGAGTGTAACAACCCGTTCTATATTTTTGTTTCAGTTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATGGTTAGCAGTACTTTTTGTCTCCCTTAAATATACTTAAATGACTTTTGACTATCAAGAATTAACTCTCTGGTTTGTGCAGAAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGG</genome_strand>
        <mrna_strand>CATCTATACACTGTTTCTCACTAATTTTCAATTAGTTTTCACAGTTTAATTATCTGAAGAACTCCGGAGATTTTTTTCCGGCGTGAGGTGGTTACTTTTTCCATTTGTTTCTCGTGAAAATCTCTCAACTTCCGATACTTTCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATGGCTCTCTCTCAAAATCAGGAGTTGGAGTATATGGTGGATGAGTACTATGACACTACTGATTTTGATGACAGCACTTTTGGGGGTGAATCGCCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTG............................................................................................AGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAG...............................................................................................GAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTCCCGCCCACCATG...............................................................................AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTTTAAATGGTTTGCTGGCTGCTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570115" ref_strand="+" ref_description="SGN-E570115 [14650]">
      <seq>ctgagtcaaagttgtttgttatgttccattctactacttgtgtgacagatctacttttgcaatgtcaaacagaacagttgaggctgatggttgaaatttccgaacttccaaatccattttgtgtgtccctctagagaataatcttgcattttatttctattcatctgccgtggtcctccattttcagttggtcgttaactagctctgttgcctcttctgcatggttcatccctttctattcaaggcccattgatcattgcaaacctttctcggctgttgctgtagaagatattgagttgatgagcattttttgctagtcattatgtgaagtggttatgttttaattcttgttgtaaatgatgtttgtttaaattgtattctttcaaataattaaccaatattgtgtgtgcattgttattgtatctatatttcagccttagaagcagattgcagttattatgtgagcagctggcgcaagcattttccatatgttgaggcaatctctggtggtcgacatcaaaacacgatgtgtatctcatngcaaaactactctgtgatgcacctggttcctcacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="3016" stop="269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2716" g_stop="2224" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2223" i_stop="652" i_length="1572">
            <donor d_prob="0.937" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="651" g_stop="569" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="578" r_length="87" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E570115" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2716" e_stop="2224"/>
          <exon e_start="651" e_stop="569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTG-ATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATGGTATGATAGGGAATAATCTGTGAATTTAAGAGGCCTTTATGGTATTTCTTCTGTTAAGTTTGAGCTAACTTGTTAATGGCAGCAAGTATGTATTAAAATGTTTGTGTGTTGCTTCATCATTTGAATAGTTGGATGGTCATCTCTTAATCATTTGAATAGTTGGATGGTCATCTCTTCTTCATTTGAATAGTTGGATGGTCATCTCTTCTGTTGAAGATGGTTGTAGTCATTATCTTGTTTATGGTTATCTCTTCTGTTGGAGATGGTTGCACTTTTTTTCTCTCTGTTTGTTAGAGATGGATTCTGCACTAGGCTCTCTTTAAGTACTTCCACTTGTGGGTTGTGAATTCTGATTGCTGTGTCACAGTTACTTCACGATTTTGATAATTATACGACTTCTTTGGTACATCTTCTCTGGTAGCTGTCATCTGATACGGTCTCCATCAGAAAGAGAAGATTTTCTGGCAATTGAGCTCTTGCATAATACGAGTAAGATAGTTGGCTTGGATTACGTTTGTCATTCATTTGAGAGTTCGTGACTTCATTTTGAAATTTCCGGCGACTTTATTGTGTGTTCTTCTGTCCTTGATCAATCACACTTCCAAACTTAGGAATTTAATTGCTGACTTTCTCTCTTTGCTATGTGGTGTTGTGCCCTGAATCAAGCGCGTTGGGAACTTGGGTGCTCAATTACTTATCTACTGCTCCCAAGAGTTATCCTCTCTTCCCTATATTCCTTGGTCCATTCCACTCTTTGGAATAGAATATCGGAGAACCTAGCACTTGTATTTGTGATCCATCTATTACGCTATTGAATCCCGTTGACGTCTTTTGAAATATGTACTGTTCATTGTTTGGGTTTTGCTGCCTTGTATTGATTATGTACAATTTCCAAGGTGGTGAGGCATCCCTTTAGAGTCTCTGTGGCGTTCTCATTTTTTTCTGCGTCATTTTTCCTCCTGTCATCATTGCGGTTTACATTTCTGACTTCTCTTTCACAGGTTTCTTTTCTGCTTCGATCTGTATAATAGTGTAGGAAAGTGAACTGTTTTTTAGCTGCCCAATTTGCTTTCCAGGAAACCTGCTCTATTGCAGATGATGATGTGTAACTATTAGTGGTAGATTGTTCAGTTGTGGACTTGTAGAAAGCTAGCAGCTGTTCCTTCGCTAGCTTATGCATCATTGACCACTAATATTTAGGACTAGCGACATATTGACCTACGACTTGACTTTGTATTAGGCATTGCCCGACTTTGCAGAAGGAGAGGGGGGCGGTTGATTTTTGTGGTCCATTCTGCAATACACTGTGTAGGTTATTTATTCCCAATTTACTGTTCGCTCAGCTTGTAATATGGTTGAGACGGGGAACGAGAACTATCTGAAACCTGAAGTTTATGAGATTGCATGTCTATCATTTTTGGAAAAAAAAATTATGAGCTTTTTCTGCAAATTACAGCATTCTTAAGTTCTGTTTTTGCTTTATTTGATCTCGTGTGACGTTGTTTGCTTCATAGGAAACTGGTATGCTGTCTAGTGATGAGTGTAACAACCCGTTCTATATTTTTGTTTCAGTTGAGG-AATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCAT-GCAAAACTACTCTGTGATGCA-CTGG-TCCTCACTTCT</genome_strand>
        <mrna_strand>CTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAATGTCAAACAGAACAGTTGAGGCTGATGGTTGAAATTTCCGAACTTCCAAATCCATTTTGTGTGTCCCTCTAGAGAATAATCTTGCATTTTATTTCTATTCATCTGCCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGCTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGATCATTGCAAACCTTTCTCGGCTGTTGCTGTAGAAGATATTGAGTTGATGAGCA-TTTTTTGCTAGTCATTATGTG-AAGTGGTTATGTTTTAATTCTTGTTGTAAATGATGTTTGTTTAAATTGTATTCTTTCAAATAATTAACCA-ATATTGTGTGTGCATTGTTATTGTATCTATATTTCAGCCTTAGAAGCAGATTGCAGTTATTATGTGAGCAGCTGGCGCAAGCATTTTCCATATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGCAATCTCTGGTGGTCGACATCAAAACACGATGTGTATCTCATNGCAAAACTACTCTGTGATGCACCTGGTTCCTCACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571388" ref_strand="+" ref_description="SGN-E571388 [13109]">
      <seq>cctcgattgatgtattgatccgagagcagtgttcacaatatcctttttgtgcagattacaaacatttagagaagtgtctcatgaaactttgtaattgtagaagatccttggttttggaacttcactcttgaatatttcatcatgaatcagctgaatgtattttgaggactgggttttgatatggaaacttatgaggacagaacctggcttatgctggatttgtagtttgtagtttgttgctgacatagaatatagttctgacttctgagtcaaagttgtttgttatgttccattctactacttgtgtgacagatctacttttgcaatgtcaaacagaacagttgaggctgatggttgaaatttccgaacttccaaatccattttgtgtgtccctctagagaataatcttgattttatttctattcatctgccgtggtcctccattttcagttggtcgttaactagctctgttgcctcttctgcatggttcatccctttctattcaaggcccattgatcattgcaaacctttctcggctgttgctgtagaagatattgagttgatgagcattttttgctaggtcattatgtgaaggtggttatgttttaattcttgttgtaaatgatgttggtttaaactgtattcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="3284" stop="2033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2984" g_stop="2333" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="648" r_length="648" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E571388" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2984" e_stop="2333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCGATTGATGTATTGATCAGAGAGCAGTGTTCACAATATCCTTTTTTATGCAGATTACAAACATTTAAAGAAGTGTCTTATGGAACTTTGTAATTGTAGAAGATCCTT-GTTTTGGAACTTCACTCTTGAATATTTCATCATGAATCAGCTGAATGTATTTTGAGGACTGGGTTTTGATATGGAAGCTTAGGAGTGAGGACAGAACCTGGCTTATGCTGGATTTGTAGTTTGTCGTTTTTTGCTGACATAGAATATAGTTCTGACTTCTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTA-GTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTT</genome_strand>
        <mrna_strand>CCTCGATTGATGTATTGATCCGAGAGCAGTGTTCACAATATCC-TTTTTGTGCAGATTACAAACATTTAGAGAAGTGTCTCATGAAACTTTGTAATTGTAGAAGATCCTTGGTTTTGGAACTTCACTCTTGAATATTTCATCATGAATCAGCTGAATGTATTTTGAGGACTGGGTTTTGATATGGAAACTT---A-TGAGGACAGAACCTGGCTTATGCTGGATTTGTAGTTTGTAGTTTGTTGCTGACATAGAATATAGTTCTGACTTCTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAATGTCAAACAGAACAGTTGAGGCTGATGGTTGAAATTTCCGAACTTCCAAATCCATTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCTATTCATCTGCCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGCTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGATCATTGCAAACCTTTCTCGGCTGTTGCTGTAGAAGATATTGAGTTGATGAGCA-TTTTTTGCTAGGTCATTATGTGAAGGTGGTTATGTTTTAATTCTTGTTGTAAATGATGTTGGTTTAAACTGTATTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414258" ref_strand="+" ref_description="SGN-E414258 [STM-19-A4]">
      <seq>caaacgactcccatggctgcctctctcattcttgcctttcatgttgttttttcctcattcatttttacctgggttttttagttgtttgttattttacatcattataagttagttaaacaaaaggatattttttttgaaactggtaatgtataataggatttggttattcacagtctaatcattgtgtgagcttttggttgatgatccctgtcgcctttttcttctttccgtgcaataactatacttttgcaggtgctctgctcctaatgttctggatattttgatttaaactgttaggctgttagttcaccctctcattaattccagaggtatggagtctgtatcctcatcgaagaattcagtgagtttgatgcttgatatggaatttacttaaacattgactatatgtgtctctaacgcattcatggacagctttctggaataatatgtcaccagagccagtatgtttgagatgatgcctcttatggcctccaagctggtgaatttgcatctgatataaatttagcattaccttatcatttcttgatgcagctaatttctttttcttcttctgttcagaaaccaaaagattatggcgaatttgacttttgccagtttctttttgtgcttctagtaatgggattctggctacatgtcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="4010" stop="2839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3710" g_stop="3093" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="624" r_length="624" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E414258" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3710" e_stop="3093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTT-TTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAA-CAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGACAGCTTTCTGGAATAATAATTCACCAGATCCAATATGTTTGAGA-GATGCCTCTTATGGCCTCCAAGCTGGTGAATTTGCATCTGATGTAAATTTAGTGTTA-C---T-ATTTCTTGATGCAGCTAATTTCTTTTTCTTCTTCTGTTCAGAAATCCAAAAGATATTGCCGAATTTGACTTTTGCCAGTTTCTTCTA</genome_strand>
        <mrna_strand>CAAACGACTCCCATGGCTGCCTCTCTCATTCTTGCCTTTCATGTTGTTTTTTCCTCATTCATTTTTACCTGGGTTTTTTAGTTGTTTGTTATTTTACATCATTATAAGTTAG-TTAAACAAAAGGATATTTTTTTTGAAACTGGTAATGTATAATAGGATTTGGTTATTCACAGTCTAATCATTGTGTGAGCTTTTGGTTGATGATCCCTGTCGCCTTTTTCTTCTTTCCGTGCAATAACTATACTTTTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTAGTTCACCCTCTCATTAATTCCAGAGGTATGGAGTCTGTATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAATTTACTTAAACATTGACTATATGTGTCTCTAACGCATTCATGGACAGCTTTCTGGAATAATATGTCACCAGAGCCAGTATGTTTGAGATGATGCCTCTTATGGCCTCCAAGCTGGTGAATTTGCATCTGATATAAATTTAGCATTACCTTATCATTTCTTGATGCAGCTAATTTCTTTTTCTTCTTCTGTTCAGAAA-CCAAAAGATTATGGCGAATTTGACTTTTGCCAGTTTCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365326" ref_strand="+" ref_description="SGN-E365326 [cLPT-2-B17]">
      <seq>ttagtctctgttgtctcattttgcataattcaattaaacctggcaaacgactcccatggctgcctttctcattcttgcctttcatgttatttttcctcattcatttttaactgggttttttagttgtctgttattttgcatcattatgagttagttaaacaaaaggatattttttttgaaactggtaatgtataataggatttggttatttacagtctaatcattgtgtgagcttttggtcgatgatccccgtcgcctttttctcctctccatgcaataactatacttctgcaggtgctctgctcctaatgttctggatattttgatttaaactgttaggctgttggtcaccctttcattaattccagaggtatggagtctgtatcctcatcgaagaattcagtgagtttgatgcttgatatggaataacttagagatcaactatatgtgtgtctaactcatttgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="4053" stop="2983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3753" g_stop="3283" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E365326" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3753" e_stop="3283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTTTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAACAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGA</genome_strand>
        <mrna_strand>TTAGTCTCTGTTGTCTCATTTTGCATAATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTATTTTTCCTCATTCATTTTTAACTGGGTTTTTTAGTTGTCTGTTATTTTGCATCATTATGAGTTAG-TTAAACAAAAGGATATTTTTTTTGAAACTGGTAATGTATAATAGGATTTGGTTATTTACAGTCTAATCATTGTGTGAGCTTTTGGTCGATGATCCCCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGG-TCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGTATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAATAACTTAGAGATCAACTATATGTGTGTCTAACTCATTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473538" ref_strand="+" ref_description="SGN-E473538 [cSTB-32-P15]">
      <seq>caaacgactcccatggctgcctctctcattcttgcctttcatgttgttttttcctcattcatttttacctgggttttttagttgtttgttattttacatcattataagttagttaaacaaaaggatattttttttgaaactggtaatgtataataggatttggttattcacagtctaatcattgtgtgagcttttggttgatgatccctgtcgcctttttcttctttccgtgcaataactatacttttgcaggtgctctgctcctaatgttctggatattttgatttaaactgttaggctgttagttcaccctctcattaattccagaggtatggagtctgtatcctcatcgaagaattcagtgagtttgatgcttgatatggaatttacttaaacattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="4010" stop="3026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3710" g_stop="3310" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E473538" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3710" e_stop="3310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTT-TTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAA-CAACTTAGAGATTGAC</genome_strand>
        <mrna_strand>CAAACGACTCCCATGGCTGCCTCTCTCATTCTTGCCTTTCATGTTGTTTTTTCCTCATTCATTTTTACCTGGGTTTTTTAGTTGTTTGTTATTTTACATCATTATAAGTTAG-TTAAACAAAAGGATATTTTTTTTGAAACTGGTAATGTATAATAGGATTTGGTTATTCACAGTCTAATCATTGTGTGAGCTTTTGGTTGATGATCCCTGTCGCCTTTTTCTTCTTTCCGTGCAATAACTATACTTTTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTAGTTCACCCTCTCATTAATTCCAGAGGTATGGAGTCTGTATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAATTTACTTAAACATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329765" ref_strand="+" ref_description="SGN-E329765 [cTOD-3-O19]">
      <seq>ccgcgaagtactgacccggatatctctgcagactcggaatttgaggacgattttgaagtgagaaagtcaaagctggatacatcagctatagaagctagaaatggcaaggatatacagggaataccttgggaaaggcttaattttaccagagacaagtaccgcgagacgaggttgaagcagtataagaactacgagagcctgtctcgctctcgtgaagatcttgaaaaggagtgcaaggaagtaggaaaaggacacagcttctacgacttccagttcaatacaaggctcgtcaaatcaactatcgtgcactttcaggtaatatagattttttagccttttcttgtttggatttatgttaacctttgatcaagaaaatcgtggactggtctgcctccctgtagttctttgtgattgatttagtctctgttgtctcattttgcattattcaattaaacctggcaaacgactcccatggctgcctttctcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="4656" stop="3380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4356" g_stop="4297" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4296" i_stop="4205" i_length="92">
            <donor d_prob="0.822" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4204" g_stop="4037" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="228" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4036" i_stop="3942" i_length="95">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3941" g_stop="3680" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="490" r_length="262" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E329765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4356" e_stop="4297"/>
          <exon e_start="4204" e_stop="4037"/>
          <exon e_start="3941" e_stop="3680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTGGTACTGGGCAGATTTAATTTTTTTGACATGTTACTGGTGTCATCTTCATCCTTAGTTTAACAATGTTGACTTACTGCTCTTCGGTTCTACAGAGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAGGTTTTTCTTCACACTCTTTTCCATTCCCATGTATTGGAATGTTCTCGTATATTTGGCTAGGCTCAACTCTAAAAGTTTATTTCCTCACCATTAAGGAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAGGTAATATAGATTTTTTAGCCTTTTCTTGTTTGGATTTATGTTAACCTTTGATCAAGAAAATCGTGGACTGGTCTGCCTCCCTGTAGTTCTTTGTGATTGATTTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTC</genome_strand>
        <mrna_strand>CCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTG............................................................................................AGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAG...............................................................................................GAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAGGTAATATAGATTTTTTAGCCTTTTCTTGTTTGGATTTATGTTAACCTTTGATCAAGAAAATCGTGGACTGGTCTGCCTCCCTGTAGTTCTTTGTGATTGATTTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330840" ref_strand="+" ref_description="SGN-E330840 [cTOD-10-H9]">
      <seq>ttttattgccctcttttctatgctaatacctgtgaaagatgcatgctgagttttttctgcgatgaccttttctatactttagttttgatgttgttaagctttttattccacaatattttggctattttctatagtttttgatgttattaagctttttattccactgaattctggctactttgtatagtttgatgttgttaagctttttattccactgtattctgtctattttctgtagtttttatgttgttaagctgtttattccactgaattctggtgattttctatagttttgatgttattaatctttttattccactaaatactggctacttcctattattttgatgtttttctcggctaaattctcgctatcttctgtagttttgatgttgttaagattttgtctccactaaaatctgacagttttctattgtttgcgaaattcaccttgtaattcaaaaatttaaatgttttccttagtagatttgtttttaataaatatttcatataaatggtttagtatttcaattttttgctaatcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="5401" stop="4254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5101" g_stop="4554" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E330840" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5101" e_stop="4554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAA-ATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTT</genome_strand>
        <mrna_strand>TTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAAGATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216639" ref_strand="+" ref_description="SGN-E216639 [cLEL-1-I9](-)">
      <seq>ccattgattctttgattggtaaacttttgactccgacctccaaagatgtgaagcacgtggatcggaaactcaaatcatgtcttgatccgggttcacatgacaagagtaaaaaaaggaagcatagatccaaagatagctcacatgaggctactgacttatcttgaactgctctaactcaagtttgtagcttcaaagcatatcttctttgcccagtggaaatagcgtttctcattgctgctcatcagttccctaatatagaacaaaaattgaagccagactgtagaagtagaggcgggtcgaggatttaagatcacaaatttctcaagacttttttcttaaattttgtactatgaaatcaattagtagtttaaacttcgagtgttagttaacctggaatttactgtttggagatgtaaaagctcactttttagaaatgagaatgttgttcttaatgagaacttcaaagtttaatatgcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="12666" stop="11500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12494" g_stop="12481" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12480" i_stop="12366" i_length="115">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12365" g_stop="12277" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="103" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12276" i_stop="12174" i_length="103">
            <donor d_prob="0.743" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12173" g_stop="11800" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="477" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="495"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E216639" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12494" e_stop="12481"/>
          <exon e_start="12365" e_stop="12277"/>
          <exon e_start="12173" e_stop="11800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGATTCTTTGGCAAGTACTTACTTAACCTTGTTATACTGCATGCCTGGAATGGTGTATCTTTCTCTTCTTGCTGACTTCTTCCCCGAAATCTCTCTGACTGCCTGAACTCCTGGAATTTGAACAGATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAAGTGCGGTTCTATCAACTCTGATTTGATTATCATTTTTCCATCTTTTGGTTTTTGCGATATTTTATTGGCCCAGCCAAAAAATGATACTGGTTTGTAAATGCAGGAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTCAAAGTTTAATATGCA</genome_strand>
        <mrna_strand>CCATTGATTCTTTG...................................................................................................................ATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAA.......................................................................................................GAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTCAAAGTTTAATATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485207" ref_strand="+" ref_description="SGN-E485207 [cSTE-17-A11]">
      <seq>gagaattagaatcggcagagagaagatatggcggatttcatgacatcaactcataaaaccaagtggatttatactccccaagatattaaacataagtataaagttgctaatcaaagggcgaaacaagcactagagatgtttggaacaactcgaatggaagttgatattgatgggactttctcgtatgctgaaagtcaaaatgacgcaaaagataatgctgaaaagcgtcctaaaccactcaaagttgaagaagaacaacttctaagggctttctacgaattcaaaattcaagacgtctgtgatgcctttaagttcccgcgtaagattcaggcaacagctctcatttattttaagaggttttatctgctatggtccgtgatggaacatcaccccaaagacattatgttaacgtgcatatatgcagcttgcaaggcagaggaaaatcatgtatcagctgaggagcttggtaaggggattggacaggatcatcatgtaatcctcaataatgagatgctggtttttcagagtctaggatttgatctgatagcttatgctccatatcgtgcacttgaaggttttatcagtgatttagaggagttctgtggagctcaagatgacgaccagcttgtggcactgaagggtgcacttgatactgctaggattgaagcnagatagattatgcgtagtgatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="17553" stop="13396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17253" g_stop="17167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.90"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="138" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.795" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="217" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="330" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="0.98"/>
            <acceptor a_prob="0.439" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="404" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="525" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14960" g_stop="14892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="594" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14891" i_stop="14747" i_length="145">
            <donor d_prob="0.863" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14746" g_stop="14702" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="639" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951">
            <donor d_prob="0.969" d_score="0.91"/>
            <acceptor a_prob="0.999" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13750" g_stop="13696" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="694" r_length="55" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E485207" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17253" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14892"/>
          <exon e_start="14746" e_stop="14702"/>
          <exon e_start="13750" e_stop="13696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGAGTAATAATTGCTGTGTTGACATCTTCCTTATAATTGGTAGCATTTCCACTCCTTGTACTACTTGATTTCTTCATTGCAATTATTGACTATTGCTCTTGAAATTGTAGGAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAGGTAGTCACTAAATTTTTTTCGACAGGTTAAGTGTTCAAGTGAAAAGTTCTCTCCGCTTACCTTGCGGTTGAGAAATCAAGTTACAAATGGAGTAAATGGAAGAAAAGGACCACAATTGACTCCTGGGAGGGGGTTGAGTTACTGGTTAATAGTGGGGTAGATGTAGGTTAAAATATAAAAACAATTTCTTATTTCCTTCCATGCAAATTGCCTCTTGCAGGGTAGGCTGCATATATTAGACTCTTGTGGTCCGACCCAGCCCTTCCCCTGCTCTCGCACATAGCGAGCTTTATTGCACCGGGCTGTCTTTTTCTTCAATCTTCTTTATTAAATAAAATGTTCTTGCACTATTTCTGCTCCTTGTAAATCTGGCTTCTGACAATTGAATTTTATCCAATGTTGTTCAACAACTAGTAGTTTTGCAGTTAAACCACCCAAACCATGTGAATCTATATGCAATATTGAAAATCTTCAGTTCTCCATCCAATGGAACAAATGCTGATTTCACTCTTCCCATTTCTATTGTTTGTCGTTCTTCCTTAGATAATCAAGGTTAATGCATCTTCTTGCTATATTATCATCAATCTTCAAACATAATAAAAGTTGGTGGCATGTTGGAGATATGATGATTATTATCATTCAATGTATTCTTAGAATTTCACATCGTAGATCTCTATGTAGCTCATTGAGCTACCCACCAACTAATCTTTCTTTTATACTTCAATTTATTTGTTCAAAACATTTCTGTGTATGCAACATGCGACAAGAAGAAGGAATAGACTTCCCTCATAAGTAGTCGGTAACATTCTGACATGCATCAATGCATTACTAATTGTAATTCATCTACTGTAGATAATGAATTAATTTTGTTTTCCATTGGTGATTTCAATTTATATTACTCTGACCTTTGTATTCATCTACCAGCTAAGTTTATTTTCTTCTGATGTACAGGGTTCACTTGATACTGCTAGGATTGAAGC-AGATAAGATTATGCGTTCTGATGGAC</genome_strand>
        <mrna_strand>GAGAATTAGAATCGGCAGAGAGAAGATATGGCGGATTTCATGACATCAACTCATAAAACCAAGTGGATTTATACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCAAAGGGCGAAACAAGCACTAGAGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAACAACTCGAATGGAAGTTGATATTGATGGGACTTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAATG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAAGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAATTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCGCGTAAGATTCAG..............................................................................GCAACAGCTCTCATTTATTTTAAGAGGTTTTATCTGCTATGGTCCGTGATGGAACATCACCCCAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACGTGCATATATGCAGCTTGCAAGGCAGAGGAAAATCATGTATCAGCTGAGGAGCTTGGTAAGGGGATTGGACAGGATCATCATGTAATCCTCAATAATGAGATGCTGGTTTTTCAG..........................................................................................AGTCTAGGATTTGATCTGATAGCTTATGCTCCATATCGTGCACTTGAAGGTTTTATCAGTGATTTAGAG.................................................................................................................................................GAGTTCTGTGGAGCTCAAGATGACGACCAGCTTGTGGCACTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACTTGATACTGCTAGGATTGAAGCNAGAT-AGATTATGCGTAGTGATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481560" ref_strand="+" ref_description="SGN-E481560 [cSTD-18-J21]">
      <seq>gtttattggaaagagaattagaatcggcagagagaagatatggcggatttcatgacatcaactcataaaaccaagtggatttatactccccaagatattaaacataagtataaagttgctaatcaaagggcgaaacaagcactagagatgtttggaacaactcgaatggaagttgatattgatgggactttctcgtatgctgaaagtcaaaatgacgcaaaagataatgctgaaaagcgtcctaaaccactcaaagttgaagaagaacaacttctaagggctttctatgaattcaaaattcaagacgtctgtgatgcctttaagttcccgcgtaagattcaggcaacagctctcatttattttaagaggttttatctgctatggtccgtgatggaacatcaccccaaagacattatgttaacgtgtatatatgcagcttgcaaggcagaggaaaatcatgtatcagctgaggagcttggtaaggggattggacaggatcatcatgtaatcctcaataatgagatgctagtttttcagagtctaggatttgatctgattgcttatgctccatatcgtgcacttgaaggttttatcagtgatttagaggtctttttctgttgatctgttacaccttccccattgagagttctgtggagctcaagatgatgaccagcttgtggcactgaagggtgcacttgatactgctaggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="17557" stop="13425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17265" g_stop="17167" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.828"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.90"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="150" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.795" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="229" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="342" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="0.98"/>
            <acceptor a_prob="0.439" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="416" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="537" r_length="121" r_score="0.934"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14960" g_stop="14854" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="643" r_length="106" r_score="0.907"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="14853" i_stop="14747" i_length="107">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14746" g_stop="14702" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="688" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951">
            <donor d_prob="0.969" d_score="0.91"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="13750" g_stop="13725" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="689" r_stop="714" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E481560" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17265" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14854"/>
          <exon e_start="14746" e_stop="14702"/>
          <exon e_start="13750" e_stop="13725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGAGTAATAATTGCTGTGTTGACATCTTCCTTATAATTGGTAGCATTTCCACTCCTTGTACTACTTGATTTCTTCATTGCAATTATTGACTATTGCTCTTGAAATTGTAGGAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAGGTAGTCACTAAATTTTTTTCGACAGGTTAAGTGTTCAAGTGAAAAGTTCTCTCCGCTTACCTTGCGGTTGAGAAATCAAGTTACAAATGGAGTAAATGGAAGAAAAGGACCACAATTGACTCCTGGGAGGGGGTTGAGTTACTGGTTAATAGTGGGGTAGATGTAGGTTAAAATATAAAAACAATTTCTTATTTCCTTCCATGCAAATTGCCTCTTGCAGGGTAGGCTGCATATATTAGACTCTTGTGGTCCGACCCAGCCCTTCCCCTGCTCTCGCACATAGCGAGCTTTATTGCACCGGGCTGTCTTTTTCTTCAATCTTCTTTATTAAATAAAATGTTCTTGCACTATTTCTGCTCCTTGTAAATCTGGCTTCTGACAATTGAATTTTATCCAATGTTGTTCAACAACTAGTAGTTTTGCAGTTAAACCACCCAAACCATGTGAATCTATATGCAATATTGAAAATCTTCAGTTCTCCATCCAATGGAACAAATGCTGATTTCACTCTTCCCATTTCTATTGTTTGTCGTTCTTCCTTAGATAATCAAGGTTAATGCATCTTCTTGCTATATTATCATCAATCTTCAAACATAATAAAAGTTGGTGGCATGTTGGAGATATGATGATTATTATCATTCAATGTATTCTTAGAATTTCACATCGTAGATCTCTATGTAGCTCATTGAGCTACCCACCAACTAATCTTTCTTTTATACTTCAATTTATTTGTTCAAAACATTTCTGTGTATGCAACATGCGACAAGAAGAAGGAATAGACTTCCCTCATAAGTAGTCGGTAACATTCTGACATGCATCAATGCATTACTAATTGTAATTCATCTACTGTAGATAATGAATTAATTTTGTTTTCCATTGGTGATTTCAATTTATATTACTCTGACCTTTGTATTCATCTACCAGCTAAGTTTATTTTCTTCTGATGTACAGGGTTCACTTGATACTGCTAGGATTGA</genome_strand>
        <mrna_strand>GTTTATTGGAAAGAGAATTAGAATCGGCAGAGAGAAGATATGGCGGATTTCATGACATCAACTCATAAAACCAAGTGGATTTATACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCAAAGGGCGAAACAAGCACTAGAGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAACAACTCGAATGGAAGTTGATATTGATGGGACTTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAATG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAAGTTGAAGAAGAACAACTTCTAAGGGCTTTCTATGAATTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCGCGTAAGATTCAG..............................................................................GCAACAGCTCTCATTTATTTTAAGAGGTTTTATCTGCTATGGTCCGTGATGGAACATCACCCCAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACGTGTATATATGCAGCTTGCAAGGCAGAGGAAAATCATGTATCAGCTGAGGAGCTTGGTAAGGGGATTGGACAGGATCATCATGTAATCCTCAATAATGAGATGCTAGTTTTTCAG..........................................................................................AGTCTAGGATTTGATCTGATTGCTTATGCTCCATATCGTGCACTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACCT-TCCCCATTGA...........................................................................................................GAGTTCTGTGGAGCTCAAGATGATGACCAGCTTGTGGCACTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACTTGATACTGCTAGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585406" ref_strand="+" ref_description="SGN-E585406 [67865]">
      <seq>ccgctgctggtctctccgggcgatcgattcaccggcgaaaaatctgcgagatgaaacgctgggccatggcatagtttattggaagatcacatccaaacgaaaattagaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatgtatcagctgaggagcttgggaagggtattggacaggatcatcatgtaatcctcaacaatgagatgctggttttccagagtctaggatttgatctaattgtttatgctccatatcgtgctcttgaaggtttatcagtgatttagaggagttctgtggagctaaagatgaagaccagnttgtggcactgaaggggttcacttgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18125" stop="13436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17825" g_stop="17779" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17303" i_length="476">
            <donor d_prob="0.997" d_score="0.91"/>
            <acceptor a_prob="0.862" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17302" g_stop="17167" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="185" r_length="137" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="236" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="315" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="428" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="502" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="623" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14960" g_stop="14892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="691" r_length="68" r_score="0.957"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14891" i_stop="14747" i_length="145">
            <donor d_prob="0.863" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="14746" g_stop="14702" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="737" r_length="46" r_score="0.889"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951">
            <donor d_prob="0.969" d_score="0.89"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13750" g_stop="13736" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="752" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E585406" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17825" e_stop="17779"/>
          <exon e_start="17302" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14892"/>
          <exon e_start="14746" e_stop="14702"/>
          <exon e_start="13750" e_stop="13736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGCTGGTCTCTCC-GGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGAGTAATAATTGCTGTGTTGACATCTTCCTTATAATTGGTAGCATTTCCACTCCTTGTACTACTTGATTTCTTCATTGCAATTATTGACTATTGCTCTTGAAATTGTAGGAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAA-GGTAGTCACTAAATTTTTTTCGACAGGTTAAGTGTTCAAGTGAAAAGTTCTCTCCGCTTACCTTGCGGTTGAGAAATCAAGTTACAAATGGAGTAAATGGAAGAAAAGGACCACAATTGACTCCTGGGAGGGGGTTGAGTTACTGGTTAATAGTGGGGTAGATGTAGGTTAAAATATAAAAACAATTTCTTATTTCCTTCCATGCAAATTGCCTCTTGCAGGGTAGGCTGCATATATTAGACTCTTGTGGTCCGACCCAGCCCTTCCCCTGCTCTCGCACATAGCGAGCTTTATTGCACCGGGCTGTCTTTTTCTTCAATCTTCTTTATTAAATAAAATGTTCTTGCACTATTTCTGCTCCTTGTAAATCTGGCTTCTGACAATTGAATTTTATCCAATGTTGTTCAACAACTAGTAGTTTTGCAGTTAAACCACCCAAACCATGTGAATCTATATGCAATATTGAAAATCTTCAGTTCTCCATCCAATGGAACAAATGCTGATTTCACTCTTCCCATTTCTATTGTTTGTCGTTCTTCCTTAGATAATCAAGGTTAATGCATCTTCTTGCTATATTATCATCAATCTTCAAACATAATAAAAGTTGGTGGCATGTTGGAGATATGATGATTATTATCATTCAATGTATTCTTAGAATTTCACATCGTAGATCTCTATGTAGCTCATTGAGCTACCCACCAACTAATCTTTCTTTTATACTTCAATTTATTTGTTCAAAACATTTCTGTGTATGCAACATGCGACAAGAAGAAGGAATAGACTTCCCTCATAAGTAGTCGGTAACATTCTGACATGCATCAATGCATTACTAATTGTAATTCATCTACTGTAGATAATGAATTAATTTTGTTTTCCATTGGTGATTTCAATTTATATTACTCTGACCTTTGTATTCATCTACCAGCTAAGTTTATTTTCTTCTGATGTACAGGGTTCACTTGATACT</genome_strand>
        <mrna_strand>CCGCTGCTGGTCTCTCCGGGCGATCGATTCACCGGCGAAAAATCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAACGCTGGGCCATGGCATAGTTTATTGGAAGATCACATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG..........................................................................................AGTCTAGGATTTGATCTAATTGTTTATGCTCCATATCGTGCTCTTGAAGG-TTTATCAGTGATTTAGAG.................................................................................................................................................GAGTTCTGTGGAGCTAAAGATGAAGACCAGNTTGTGGCACTGAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCACTTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412615" ref_strand="+" ref_description="SGN-E412615 [STM-16-F21]">
      <seq>gggcgatcgattcaccggcgaaaaatctgcgagatgaaacgctgggccatggcatagtttattggaagatcacatccaaacgaaaattagaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatgtatcagctgaggagcttgggaagggtattggacaggatcatcatgtaatcctcaacaatgagatgctggttttccagagtctangatttgatctaattgtttatgctccatatcgtgctcttgaaggttttatcagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18108" stop="14597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17809" g_stop="17779" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17303" i_length="476">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17302" g_stop="17167" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="168" r_length="137" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="219" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="298" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="411" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="606" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14960" g_stop="14897" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="670" r_length="64" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E412615" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E412615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17809" e_stop="17779"/>
          <exon e_start="17302" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATT</genome_strand>
        <mrna_strand>GGGCGATCGATTCACCGGCGAAAAATCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGAAACGCTGGGCCATGGCATAGTTTATTGGAAGATCACATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG..........................................................................................AGTCTANGATTTGATCTAATTGTTTATGCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419249" ref_strand="+" ref_description="SGN-E419249 [STM-29-A18]">
      <seq>gtttcaccggcgaaaaatctgcgatcttctagagatgaaacgctgggccatggcatagtttatttgaagatcacatccaaacgaaaatttgaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatgtatcagctgaggagcttgggaagggtattggacaggatcatcatgtaatcctcaacaatgagatgctggttttccagagtctaggntttgatctaattgtttatgctccata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18101" stop="14626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17801" g_stop="17779" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17312" i_length="467">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17311" g_stop="17167" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="169" r_length="146" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="220" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="299" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="412" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="486" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="607" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14960" g_stop="14926" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="642" r_length="35" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E419249" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17801" e_stop="17779"/>
          <exon e_start="17311" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATA</genome_strand>
        <mrna_strand>GTTTCACCGGCGAAAAATCTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTAGAGATGAAACGCTGGGCCATGGCATAGTTTATTTGAAGATCACATCCAAACGAAAATTTGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG..........................................................................................AGTCTAGGNTTTGATCTAATTGTTTATGCTCCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408273" ref_strand="+" ref_description="SGN-E408273 [PPI-10-L3]">
      <seq>atcacaaagccttaagcccttccggtatattgacccgctgctggtctctccggcgatcgtttcaccggcgaaaaatctgcgatcttctaagagatgaaacgctgggccatggcatagtttattggaagataacatccaaacgaaaattagaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctatgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatgtatcagctgaggagcttgggaagggtattggacaggatcatcatgtaatcctcacaatgagatgctggttttccagagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18159" stop="14751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17859" g_stop="17779" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17312" i_length="467">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.860" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17311" g_stop="17167" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="228" r_length="147" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="279" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="358" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="471" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="545" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="665" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14960" g_stop="14955" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="671" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E408273" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17859" e_stop="17779"/>
          <exon e_start="17311" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTAT-AGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTA</genome_strand>
        <mrna_strand>ATCACAAAGCCTTAAGCCCTTCCGGTATATTGACCCGCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTAAGAGATGAAACGCTGGGCCATGGCATAGTTTATTGGAAGATAACATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTATGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTC-ACAATGAGATGCTGGTTTTCCAG..........................................................................................AGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427112" ref_strand="+" ref_description="SGN-E427112 [STM-47-F18]">
      <seq>gagaattagaatcggcagagagaagatatggcggatttcatgacatcaactcataaaaccaagtggatttatactccccaagatattaaacataagtataaagttgctaatcaaagggcgaaacaagcactagagatgtttggaacaactcgaatggaagttgatattgatgggactttctcgtatgctgaaagtcaaaatgacgcaaaagataatgctgaaaagcgtcctaaaccactcaaagttgaagaagaacaacttctaagggctttctacgaattcaaaattcaagacgtctgtgatgcctttaagttcccgcgtaagattcaggcaacagctctcatttattttaagaggttttatctgctatggtccgtgatggaacatcaccccaaagacattatgttaacgtgcatatatgcagcttgcaaggcagaggaaaatcatgtatcagctgaggagcttggtaaggggattggacaggatcatcatgtaatcctcaataatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="17553" stop="14768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17253" g_stop="17167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.90"/>
            <acceptor a_prob="0.952" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="138" r_length="51" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.795" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="217" r_length="79" r_score="0.911"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.90"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="330" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="0.98"/>
            <acceptor a_prob="0.439" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="404" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15171" g_stop="15068" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="508" r_length="104" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E427112" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17253" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATG</genome_strand>
        <mrna_strand>GAGAATTAGAATCGGCAGAGAGAAGATATGGCGGATTTCATGACATCAACTCATAAAACCAAGTGGATTTATACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCAAAGGGCGAAACAAGCACTAGAGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGAACAACTCGAATGGAAGTTGATATTGATGGGACTTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAATG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAAGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAATTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCGCGTAAGATTCAG..............................................................................GCAACAGCTCTCATTTATTTTAAGAGGTTTTATCTGCTATGGTCCGTGATGGAACATCACCCCAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACGTGCATATATGCAGCTTGCAAGGCAGAGGAAAATCATGTATCAGCTGAGGAGCTTGGTAAGGGGATTGGACAGGATCATCATGTAATCCTCAATAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320702" ref_strand="+" ref_description="SGN-E320702 [cTOB-27-F17]">
      <seq>tgcttattaaattcttccattacaaagccttaagcccttccggtatattaaccctctgctggtctctccggcgatcgtttcaccggcgaaaaatctgcggggcatggcatagtttaaaaggaatcgcatccaaacgaaaattagaattggcagagagaagacatggctgattttgtgacatctactcatagaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactggagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcatatgctgaaagccaaaatgacgccaaagataatgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaaaggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagagggtttatctacnatggtccgtgatggaacatcaccccaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatgtatcagctgagggacttgggaaggggattggacaggatcatcatgtaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18177" stop="14776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17877" g_stop="17779" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17290" i_length="489">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17289" g_stop="17167" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="222" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="273" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="352" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="465" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="539" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15076" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="635" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E320702" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17877" e_stop="17779"/>
          <exon e_start="17289" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCT</genome_strand>
        <mrna_strand>TGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGGTTTATCTACNATGGTCCGTGATGGAACATCACCCCAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGGACTTGGGAAGGGGATTGGACAGGATCATCATGTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450749" ref_strand="+" ref_description="SGN-E450749 [cSTS-10-G4]">
      <seq>cacagacactgtaccgtgcttattaaatttcctccatcacaaagccttaagcccttccggtatattaacccgctgctggtctctccgggcgatcgattcaccggcgaaaaatctgcgatcttctagagatgaaacgctgggccatggcatagtttattggaagatcacatccaaacgaaaattagaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18192" stop="14828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17894" g_stop="17779" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17312" i_length="467">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.860" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17311" g_stop="17167" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="263" r_length="146" r_score="0.910"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="314" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="393" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="506" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="580" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15128" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="624" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E450749" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17894" e_stop="17779"/>
          <exon e_start="17311" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGAGCACTTCACTGTGCTTATTAAAT-TCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCC-GGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATG</genome_strand>
        <mrna_strand>CACAGA-CACTGTACCGTGCTTATTAAATTTCCTCCATCACAAAGCCTTAAGCCCTTCCGGTATATTAACCCGCTGCTGGTCTCTCCGGGCGATCGATTCACCGGCGAAAAATCTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTAGAGATGAAACGCTGGGCCATGGCATAGTTTATTGGAAGATCACATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443729" ref_strand="+" ref_description="SGN-E443729 [cSTA-39-J1]">
      <seq>gtttcaccggcgaaaaatctgcgatcttctagagatgaaacgctgggccatggcatagtttatttgaagatcacatccaaacgaaaatttgaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctgcatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18101" stop="15097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17801" g_stop="17779" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17312" i_length="467">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.860" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17311" g_stop="17167" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="169" r_length="146" r_score="0.903"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="220" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="299" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="412" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="486" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15155" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="503" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E443729" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17801" e_stop="17779"/>
          <exon e_start="17311" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATG</genome_strand>
        <mrna_strand>GTTTCACCGGCGAAAAATCTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTAGAGATGAAACGCTGGGCCATGGCATAGTTTATTTGAAGATCACATCCAAACGAAAATTTGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484952" ref_strand="+" ref_description="SGN-E484952 [cSTE-16-A7]">
      <seq>caaagccttaagcccttccggtatattgacccgctgctggtctctccggcgatcgtttcaccggcgaaaaatctgcggagtgtttatacattatttttgaagatcttctaagagatgaaacgctgggccatggcatagtttattggaagataacatccaaacgaaaattagaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaagggctttctatgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18155" stop="15106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17855" g_stop="17779" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17337" i_length="442">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.161" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17336" g_stop="17167" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="249" r_length="172" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="300" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="379" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="492" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="566" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15163" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="575" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E484952" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17855" e_stop="17779"/>
          <exon e_start="17336" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTAT-AGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTG</genome_strand>
        <mrna_strand>CAAAGCCTTAAGCCCTTCCGGTATATTGACCCGCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTTTATACATTATTTTTGAAGATCTTCTAAGAGATGAAACGCTGGGCCATGGCATAGTTTATTGGAAGATAACATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAGGGCTTTCTATGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216738" ref_strand="-" ref_description="SGN-E216738 [cLEL-1-G15](-)">
      <seq>acaaagccttaagcccttccggtatattaaccctctgctggtctctccggcgatcgtttcaccggcgaaaaatctgcggggcatggcatagtttaaaaggaatcgcatccaaacgaaaactagaatcggcagagagaagacatggctgattttgtgacatctactcatagaaccaagtggacttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacatgcactggagaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18156" stop="16706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17856" g_stop="17779" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17290" i_length="489">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17289" g_stop="17167" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="201" r_length="123" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.98"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="252" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E216738" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216738" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="17856" e_stop="17779"/>
          <exon e_start="17289" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG</genome_strand>
        <mrna_strand>ACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAACTAGAATCGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGACTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACATGCACTGGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547034" ref_strand="+" ref_description="SGN-E547034 [TUS-70-L8]">
      <seq>ctttatatattgttacattcaattttattcataggcaagaaagtacatttacatttacattatatataagtaaacttgtttttagagaagaaacaccaaaaaaaatggaacagcaaataactaataaattcaccgtcatgtttatcttcttcattttagtgcttctttttctccgtgctgaatcaactaaacctccattttcatgtgactcttcaaacccaaatacaagttcatatcccttctgcaacgctgcgttaccaatcccacaaagggtaaacgacctcgtttcgcgtctcactgtagatgagaaaatcttacagctcgttaatggagcgccggaaatacctcgactcggtatctccgcttatgaatggtggtcggaagggttacacggcatttctaggcatggaaagggtacgctttttaatggaaccattaaggcggcaactcaattccctcagatcattcttactgcttcttcttttgatgaaaatctctggtatcgtatagctcaggcaattggaagagaggcaagagcagtgtacaatgcangtcagctaaagggaataacattatgggcaccaaatataaacatactcagggacccaaggtggggaagaagccaagagacaccaggggaagaccctatgatggtgggaaaatatggagtggcttatgtaagaggacttcaaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="28125" stop="30035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28425" g_stop="28954" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28955" i_stop="29552" i_length="598">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29553" g_stop="29735" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="698" r_length="183" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E547034" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28425" e_stop="28954"/>
          <exon e_start="29553" e_stop="29735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATATATTGTTACATTCAATTTTATTCATAGACAAAAAAAAAAGTACATTACATTTATTTACATTATATATATGTAAACTTGTTTTTTACAGAAGAAACACCAAAAAAAAAAAAAAATGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCGTCATTTTAGTGCTTCTTTTTCGCCGTACTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAGGTATGTGATTATTATCATGTTTGTTGAGAGATAAATTTTATTATTTTTCAATTTTAGGAGTATCGCCTGAATTCATCGTAAATTGGCTAGTTTTGTATCGGTTGTCGATCTATATCAACCCTTCTCTTTTACTCCGACGCACTCTGATCGTGTTTACGCTATTCAAAATGTACTCCATTGGTCTATGTCCGTCTTTCATGCCTCTTCCTTTTAATTAAATATTAATATTATTAAATTGGAAATTTGACTTAAAATGTTCTTATTTAGTCGTCGATCTTAATTTAATATTTCTGTTTTTTCTTTCACCACATTAATATCGCTCTATTGGAGTAAGAGTAAGGTGGAACAGAGTAATTAATTCTATGTTGATTTTTAAAATTGGCAAGTATTTTGGAATGTTATTTTTGGTAATGGACCAGACAAGGGAGTAATTATAGTTATAGATAACTTAATGATTATCTTCCAATTTGTATGACATGCATTAAAATCATATTTAGTTGAAAGTTGATCATAAAATTATTGGACAGAAGAGGAATGTGTTTGTTGGATAGAAAGAAGAAAATCAGTACTAGTTTGTTGAACTTGTTGCTTTCTGTAGGCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAATATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTATGTAAGAGGACTTCAAGGGGAT</genome_strand>
        <mrna_strand>CTTTATATATTGTTACATTCAATTTTATTCATAGGC----AAGAAAGTACATT---TACATTTACATTATATATAAGTAAACTTG-TTTTTAGAGAAGAAACACCAAAA-AA-AA-----TGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCTTCATTTTAGTGCTTCTTTTTCTCCGTGCTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCANGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAACATACTCAGGGACCCAAGGTGGGGAAGAAGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTATGTAAGAGGACTTCAAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361410" ref_strand="+" ref_description="SGN-E361410 [cLPP-6-H13]">
      <seq>tttatatattgttacattcaattttattcataggcaagaaagtacatttacatttacattatatataagtaaacttgtttttagagaagaaacaccaaaaaaaatggaacagcaaataactaataaattcaccgtcatgtttatcttcttcattttagtgcttctttttctccgtgctgaatcaactaaacctccattttcatgtgactcttcaaacccaaatacaagttcatatcccttctgcaacgctgcgttaccaatcccacaaagggtaaacgacctcgtttcgcgtctcactgtagatgagaaaatcttacagctcgttaatggagcgccggaaatacctcgactcggtatctccgcttatgaatggtggtcggaagggttacacggcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="28126" stop="29139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28426" g_stop="28839" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E361410" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.038" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28426" e_stop="28839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATATTGTTACATTCAATTTTATTCATAGACAAAAAAAAAAGTACATTACATTTATTTACATTATATATATGTAAACTTGTTTTTTACAGAAGAAACACCAAAAAAAAAAAAAAATGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCGTCATTTTAGTGCTTCTTTTTCGCCGTACTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTC</genome_strand>
        <mrna_strand>TTTATATATTGTTACATTCAATTTTATTCATAGGCAA----GAAAGTACATT---TACATTTACATTATATATAAGTAAACTTG-TTTTTAGAGAAGAAACACCAAAAA-AA-A-----TGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCTTCATTTTAGTGCTTCTTTTTCTCCGTGCTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205527" ref_strand="+" ref_description="SGN-E205527 [cLEC-28-P23]">
      <seq>cgtactgaatcaactaaacctgcattttcatgtgactcttcaaacccaaatacaagttcatatcccttctgcaacgctgcgttaccaatcccacaaagggtaaacgacctcgttacgcgtctcactgtagatgagaaaatcttacagctcnggaatggagcgccggaaatacctcgactcggtatctccgcttatgaatggtgggcggaagggttacacggcatttctaggcatggaaagggtacgctttttaatggaaccattaaggcggcaactcaattccctcagatcattcttactgcttcttcttttgatgaaaatctctggtatcgtatagctcatgcaattggaagagaggcaagagcagtgtacaatgcaggtcagctaaagggaataacattatgggcaccaaatataaatatactcagggacccaaggtggggaagaggccaagagacaccatgggaagaccctatgatggtgggaaaatatggagtggctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="28313" stop="30013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28613" g_stop="28954" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28955" i_stop="29552" i_length="598">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29553" g_stop="29713" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="503" r_length="161" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E205527" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28613" e_stop="28954"/>
          <exon e_start="29553" e_stop="29713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTACTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAGGTATGTGATTATTATCATGTTTGTTGAGAGATAAATTTTATTATTTTTCAATTTTAGGAGTATCGCCTGAATTCATCGTAAATTGGCTAGTTTTGTATCGGTTGTCGATCTATATCAACCCTTCTCTTTTACTCCGACGCACTCTGATCGTGTTTACGCTATTCAAAATGTACTCCATTGGTCTATGTCCGTCTTTCATGCCTCTTCCTTTTAATTAAATATTAATATTATTAAATTGGAAATTTGACTTAAAATGTTCTTATTTAGTCGTCGATCTTAATTTAATATTTCTGTTTTTTCTTTCACCACATTAATATCGCTCTATTGGAGTAAGAGTAAGGTGGAACAGAGTAATTAATTCTATGTTGATTTTTAAAATTGGCAAGTATTTTGGAATGTTATTTTTGGTAATGGACCAGACAAGGGAGTAATTATAGTTATAGATAACTTAATGATTATCTTCCAATTTGTATGACATGCATTAAAATCATATTTAGTTGAAAGTTGATCATAAAATTATTGGACAGAAGAGGAATGTGTTTGTTGGATAGAAAGAAGAAAATCAGTACTAGTTTGTTGAACTTGTTGCTTTCTGTAGGCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAATATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTA</genome_strand>
        <mrna_strand>CGTACTGAATCAACTAAACCTGCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTACGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCNGGAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGGCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAATATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCATGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547033" ref_strand="-" ref_description="SGN-E547033 [TUS-70-L8](-)">
      <seq>tgggtacgggcccccctcgagttttttttttttttttttacttaagacatgatatttattgataaaatgaaaacaaattattcatcaattcacttgtcatattttaaattattatttgtcataaacctagagtagaactagtttctttctgcaaatattagcagatttaactagtaaccttccataattaaattttacttgctattatcttaatactaactaaaaccttagatctgggagatcatagagatacaggaacaggatactcctgatctcccacaagaaggaaatgtttcccttcatcgataactaatgtaccatctcgattagccctggtgaagtgctcacaaggcttcacatcaaatgtaacttgtgtatttgcccctgcttccaaattcacactcttgaatcctatcaatgtcttttttggaacctcatccactgtgctagagtgcttcagaaacaacaacacggggtgcttaccagccatttctccctggtttttcaccgcaactttaactgttatcatcgcgctgttacatacttctggtccaacgtctgatacagcaatgttcagaacagaacctttttcagttgccttgttgatctttgggttcttgaaaagcagttggtttttgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="46844" stop="31976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38500" g_stop="38467" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.618"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38466" i_stop="32887" i_length="5580">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32886" g_stop="32277" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="642" r_length="609" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E547033" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547033" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38500" e_stop="38467"/>
          <exon e_start="32886" e_stop="32277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGACATGGCCACGCCCACTTTTTTGTCTTGGTCCAAATACGACTTTTCGTCAATAATTATATATTCAGTATAATTATAATAAAGTCTACATATATTTTATCTTTTTTCTATCAAAAGTAGAATTATTTCTAATAGATCAAAACGACCTCCCTGGTCCCTAATCCACTCCACTTATTGTGCAAGAATAAATAGAAAATGAACAATTTGACTTTGAGACTTTTACCTTATATTCGACTAGCGATAAAATATGCTAATTTTAAAAATGAAAAAACAAAAATTAAAGGGGCCAGGTATAATTAATACAAATCCAGTCTTTTGAAATTAGTCCATCAAAATATTGGCAAGACGAATTATATTTTCAATTTCTATTTTTAAATTAGTCCATCAAAATATTGGCAAGACGAATTATATTTTCAATTTCTATTTTTATTTTGACATCCCACCGACAATGTCATAATAAACATTAAAAAGCATTATTTTTTCGATACTAGCATTTTAAGAATTATTCCCTGCAAATTTTAAGCATTAAAATATATATTTATTTTTTAAAAAGATCTGACAGATAAGGTTGTTGCCCTAATAATAATTCAGAAAATTAAATCCCGTGACTGTTGTTTCCATGATAGGAAAAGTACATATAACATATCAAGACAATGAAGTCTTCTAAACTTCGAAAGTAGTGAAGAATCGTTAAATACTGATTACTCGTTGGTCATATAAATAAAAAGGCTATAGAAATGCAAAATATTAGTCCATGCTTCGTTTTTAACATTATTTGACTTGATGATATTTAAAGAAAAAACTTAGATTTATAATCTAAAACAATCACGATACATATATATATGATTTTATTTTCATTAAAGTAAAAAAAATTAAATTAAATCACTTCATTTTAAAGTACCGTGGCGTTTTTTTTGGGATAAACTGAAAAAGAAAAAGATATCAAAATGAGATAAAAGAAGTACTCTCTTTCAAAGAAAAAAACTTGATTCGTCCAACAATATTTGTTTACGTACTTGTCCACTTTATAAAATGAAATAATACATAAATATATCCTTTAACTTTACATTATTTTATATTTATGTCTTTTTAACTTTGAATATGCACAAGTAGACACTTAAAATTGCATAAAATTAAACAAATGAACACACACGTCCTATGTGACATTCTCATGATTATTTGTGTTTTACGTGGTGTGTAATGTGTCACATTGGACTAATTTGTCTACTTATTCAACTTTACACAAGTATAAATGTTTATTGGTGTACACCCAAAATTTGAGAGTATAAATGTGAAATGAGGTCAAGTTAAAAGACATATATATATATATATATATGCATTCCGAAATTTATGAATAATTTTAAACTTTCTAATTTACCCTTATTATCAATTATATTCATTTTTCAATTACATTTTTTAAGACATTGTATTTATTATATTTAAAAGATGGTATAGTAAAATCAACCTTCTATTTATATTTTCTTAAAAAATGTGCCAAGTTACAAGTGAATAACTATTGTTGGACGGAGGAAAACATAAAACACTTTCAGCCTTAAGATGCATAAATCTGAGTTAATGAAGACATAAAGTAGATACTAAACAATTTAAGTGAATATGTAAAAATACTTTATACGCATAGAAATAACATAGGTCACAAATTGATTCAAACATCATGATTATATCGAAAAGAGAGAAAAGAAAGAATTAACTTACAATGGCGTTGAAGCTAAATCGATCCAAGTTTTTCCATTGATCCAAATCATAAGCAGTGAAATGTTTGCAGCAAGCAGAAGCTTGAAGGTGACCTTTTTTAAGCTGTCCACCATTAAAACTGTCACCTTGTACACCTCTAACATACCTAATTGCATATTTGCCAGTCATTATTGGGTCCTCCCCTGGTGTCTCTTGACCTCTTCCCCATCTTGGATCCCTAAATATATTTATATTTGGTGCCCAAAATGTCATACCGATTGCTTGACCTGCATTGTATACTCCCCTGGCCTCTACTCCAATCACCTAAATTCATTCTTACAAAATTATTAGCAATAAAAATTCACAGTTTTTTTTACACTACACTCATTGTAACAAGTTACATGAATCATTAATACAGTAAAATAAAAAAAAAAAGATGGACTATCAATAATTGAATTTTGAGACACAATAAATATCCATACATCCACCGACAATCCAAATGAAAGAGTACTATTTTTAATCTACATACCTAATGTGTACTTTATATTTCAAAGTTTACTAACATACTACATTTATCGAGAAAATGAAATCTCTTTTGACCATTCATAAATTGCATAAGAAAAAAAAATATTATTTTAGATATGGTAAAAATAAAAAAATCATAAAATTTAGAATAAGTGAGTAAATTACATCTCAACTTTACTTTACAATTTTTTAAAAAATGCATATATGTTAAGTGACAGGGCATATTCCTTCTAAATCACAAAGTTAATTATATATATATATATATTTTTATTTCTTTTTTTAAGTTGATAAAATTTGAATAGTGCCTTCAAAATCAATCTTCCCTTTAAACATGGGAAATGGAGAAAAAGTCTATAAGGTAAAAAAATCAAATCCTCGCTAGCAAAATTAAAGTCTAAAGTTAATAAATCGCCGCGGAAAGATTCAAAATGTATAAAAGTAAAAAACAAGTAAATATTATGTCCGAAATTTTCAGAGACATACGTATACTGTACTAAAGTCATATCATTCGTGAATCTATTTTATAAGTAATTTTTTATCCTTTTTCAGTTTAAGTATGGATAAAAAATTACTTATAAAATAAATTTAGAAATAATAGAACCTTAGTATAGTATAAGTGTGTCCATAAAAATTTGAAACATAAATTGAACGGCTAATTGTCCATTATCCTAAAAAAAAAAAAATTAAACAAAACAGATTTTTAAATTGGTTACTAACCTGACCAATGCGGTACCATAGATTTTCATCAAAAGTAGCAGCAGTGAGAATAACTTGGGGAAAACTGGTGGCTCCGGCAATACTCCCATTGAAGAAAATACCTTTTCCGGCAGAACCAACGCCGTGCAATGATTCCGACCACCACTCATACGCCGGAATACCGAGTCTGGGTATTGCAGGAGCTGAGTTAACTAGTTGAGATATTTTCTCATCGAGTGTGAGTCGAGAAACAAGGTCTAGTACACGTACACTAATTGGAAGTCCTGTTTGGCAAAATTTTAACGATTTGGTTTGCGGATTCGACGAATCGCAAGAGAAAGGTGGCTGAGTTGATTGAACAATCGAAACTAATGATAGAGATATGAGAATAGTAGTAATGAGAGTTGAGATGTGAAGTTTCATTGTGAAGTGAAAAATGGGGGAAAATGGAAGTTGGAGTTAGGAGTGGTACAAAGAGAGGTGAACTTATTTATAAGAAGAAAAAAAAAAGAAATTTAATCTTTTTTGATAGTAAAAGAATATTTTACTAAAGTTACTAGTTTTGGATATACAATATTGAATTTATCCATTTAGTTTTAAAAGTATATGTCTATTTAAAGCCTAGAGCATTTTGAAATAAGTTTTATTATCTAATGAGGATGATTTTTGGTGCAATTTAATTCGAGTATAGAAAATAATATTTTTACTTTATATTAATTTTGAGCTTAACTTTTATATCCTGCAAATCAAGTAAAATTTCCATGTATACAAGTCATTAAATCTCATAAAGCATACATATGTAAGTTATTTCTTCGTTGTATTTTAATTTTGATCCATTTTATATTAACTCAGAGTTAGCCGATACTCATGAGTAACTTTTCCATAGAATATTTGATTGATATATTTAAATTAAACGTTTAAATTAATTTTTCATGTGTATATAAAAAATTAGCATATATCTTTATTTTACGTGTCTTAAAAATTAAAGAGTAGAAGCACTTTGAAAGTAAGATAGTTAAAATGTCTGTTTGTGCATTATAAAAATTAAAAGTTAAAGTTAAAATTTAAAGCCAAATTTAAGATCTAATATATATATATTATGCCTCAAAAGTAATTGCATAAACTATTACTATTCAGAAGCAAACGAAGTAAGTTTATTTCTATAAGAACTTTTCAGAAACTTGGTTAAGCTAGGTTGGTGTTTAATATTAATAATAATTTTTTAAAATAATTAGCTTAATATAAATTATTATGTGTTTTTGAAATTTTGATCAATTGAGTTACATGGAGGGATCATTTGGTCCATCTCATTATATTGATTTTTCTCTTTTAATTTTACTTTTGTTTAAACAAATACAATTTACAAGAAATTATTTAATATCTTATTAAGGAAAAATTAATAAAAAATTACTTTTTATTTAAGAAAAATTGTACCAAGATAAAACATCATTTATTATAAAACGAGAGTAGGAAGAAACTTTCGTATTAATACTTTTTGCTTTGTTAGTTTGTACTTTGTCTTTAGGTTTGGTTAGTCATATAGCAAATTCTCATTAACTATAAAATAAATAATCTGGTAACCCAACGAGTCTTACTAACAAGTTTCGTACTTATTCTCATATTAAATATTATAAATCTTTTTTTCTTGTTATTTAATCTACGCCATTAATTTTTTATTATATATATATTTATATATTCTCCTATTTTTATCCTTTTCAATTTCCCCGTTTTTTCCACACAAAAAAAAGAATAGAATAAAAAATTTCCCCGTTTTCTTTTACCTACTCTAGTTGTATCGAAAATTAACCTTCAACTAAAAAACTAACAACTTGTTCTTATTATTCTTCCTTTTTCGTCGTATCAAATTATATTTTACTAAATATAATTAAATAATCATAAAAATAAAGAGTAATTAATAATTTTTTTTGTCATATGATCTTTTAACGAAAGATAAAACATTCAATCAACATGTGTAATAAAGTAATATAGATTATCATTCGAGACAATGGTAAATACTCATGTTTTAAGAAATTTATATCATATAAGAGTGTAATAATAAGGATATATTTGAACCATTTATAGAAGTATATATACGCTATTTTTGTAATATAATATAGATATATCGCTCTAAATTGCAAAGTAAAAGGACATATGGTGCTCTGTTTCCCAATTAACTTTAATCACAATATCCGGAGATTCAGTTAATTCGTTGTTAAAGTATGAAGAATTTCTAACTTTAAACACTATTTTTGGCCATATTTATTAAGATCATACTAATTAATGGAGCTCATTTTATGCGTTCTTGCGTAGAGAAGTTTTGGTTGTCACGTTTTAGAGAAGATGATCCTTAATATATGGTGGTTGGATTGTTTGGTCATAAATATATACCCTTTAACAGGAATAATCCTTGATATATGAAAAAAGTAATCATCTTGTTCGAGAACGTTTTACCCCTTAAATGGTATTACGAAATATAAATATCTAATATACAATCAGCAACCTAAAACTTAGAAAAATATATAGAGTAAGTTTAAAGAATAATTTTATGCAGTTGGTGGAGGTAAGCTACAGGAGTGAGTAGGACAATGACAATCCATGAGCATTCTAATTGTGGGACTAATCATATTCATCAGTAGAAAGGATAGGGACTAATAATATTTTAAACTATTCAAAATTAAAGTAGAATTTATGCAAAAGGATGATACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTGATACAGCAATGTTCAGAACAGAACCTTTTTCAGTTGACTGGTTGATCTTTGGGTTCTTGAAAAGCAGTTGGTTTTTGCTCA</genome_strand>
        <mrna_strand>TGG-GTACGGGCCCCCCTCGAGTTTTTTTTTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAATTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTTGCTATTATCTTAATACTAACT-AAAACCTTAGATCTGGGAGATCATAGAGATACAGGAACAGGATACTCCTGATCTCCCACAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTGGTGAAGTGCTCACAAGGCTTCACATCAAATGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTGATACAGCAATGTTCAGAACAGAACCTTTTTCAGTTGCCTTGTTGATCTTTGGGTTCTTGAAAAGCAGTTGGTTTTTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320402" ref_strand="+" ref_description="SGN-E320402 [cTOB-22-M6]">
      <seq>gactagtctcgagttttttttttttttttttacttaagacatgatatttattgataaaatgaaaacaaattattcatcaattcacttgtcatattttaaactattatttgtcataaacctagagtagaactagtttctttctgcaaatattagcagatttaactagtaaccttccataattaaattttactagctattatcttaatactaactaaaaagcttagatctgggagatcatagagatacaggaataggatactcctgatctcccaaaagaaggaaatgtttcccttcatcgataactaatgtaccatctcgattagccctagtgaagtgctcacaaggcttcacatcaaacgtaacttgtgtatttgcccctgcttccaaattcacactcttgaatcctatcaatgtcttttttggaacctcatccactgtgctagagtgcttcagaaacaacaacacggggtgcttaccagccatttctccctggtttttcaccgcaactttaactgttatcatcgcgctgttacatacttctggtccaacgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="46844" stop="32058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32911" g_stop="32358" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E320402" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32911" e_stop="32358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAAAGTAGAATTTATGCAAAAGGATGATACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTG</genome_strand>
        <mrna_strand>GACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445446" ref_strand="+" ref_description="SGN-E445446 [cSTA-45-F13]">
      <seq>ttttcctccatttttcacttcacaatgaaacttcacatctcacctctcattactactattctcttatgtctatcattcgtttcgattgttgaatcaactcagccacccttctcttgtgattcgttgaatccgcaaaccaaatcgttaaaattttgccaagcaggacttccaattagcatacgtgtacaagaccttgtttctcgactcacactcgatgaaaaaatatctcaactagttaactcagcccctgctatacccagactcggtattccggcgtatgagtggtggtcggagtcgttacacggcgttggttctgccggaaaaggtattttcttcaatgggagtattgccggagccaccagttttccccaagttattctcactgctgctacttttgatgaaaatctatggtaccgcattggtcacgtgattggagtagaggcaaggggagtatacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="34837" stop="36814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35137" g_stop="35562" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36481" g_stop="36514" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="460" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E445446" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35137" e_stop="35562"/>
          <exon e_start="36481" e_stop="36514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCCCCATTTTTCACTTCACAATGAAACTTCACATCTCAACTCTCATTACTACTATTCTCATATCTCTATCATTAGTTTCGATTGTTCAATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAGGTTAGTAACCAATTTAAAAATCTGTTTTGTTTAATTTTTTTTTTTTTAGGATAATGGACAATTAGCCGTTCAATTTATGTTTCAAATTTTTATGGACACACTTATACTATACTAAGGTTCTATTATTTCTAAATTTATTTTATAAGTAATTTTTTATCCATACTTAAACTGAAAAAGGATAAAAAATTACTTATAAAATAGATTCACGAATGATATGACTTTAGTACAGTATACGTATGTCTCTGAAAATTTCGGACATAATATTTACTTGTTTTTTACTTTTATACATTTTGAATCTTTCCGCGGCGATTTATTAACTTTAGACTTTAATTTTGCTAGCGAGGATTTGATTTTTTTACCTTATAGACTTTTTCTCCATTTCCCATGTTTAAAGGGAAGATTGATTTTGAAGGCACTATTCAAATTTTATCAACTTAAAAAAAGAAATAAAAATATATATATATATATAATTAACTTTGTGATTTAGAAGGAATATGCCCTGTCACTTAACATATATGCATTTTTTAAAAAATTGTAAAGTAAAGTTGAGATGTAATTTACTCACTTATTCTAAATTTTATGATTTTTTTATTTTTACCATATCTAAAATAATATTTTTTTTTCTTATGCAATTTATGAATGGTCAAAAGAGATTTCATTTTCTCGATAAATGTAGTATGTTAGTAAACTTTGAAATATAAAGTACACATTAGGTATGTAGATTAAAAATAGTACTCTTTCATTTGGATTGTCGGTGGATGTATGGATATTTATTGTGTCTCAAAATTCAATTATTGATAGTCCATCTTTTTTTTTTTATTTTACTGTATTAATGATTCATGTAACTTGTTACAATGAGTGTAGTGTAAAAAAAACTGTGAATTTTTATTGCTAATAATTTTGTAAGAATGAATTTAGGTGATTGGAGTAGAGGCCAGGGGAGTATACAATG</genome_strand>
        <mrna_strand>TTTTCCTCCATTTTTCACTTCACAATGAAACTTCACATCTCACCTCTCATTACTACTATTCTCTTATGTCTATCATTCGTTTCGATTGTTGAATCAACTCAGCCACCCTTCTCTTGTGATTCGTTGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAGCAGGACTTCCAATTAGCATACGTGTACAAGACCTTGTTTCTCGACTCACACTCGATGAAAAAATATCTCAACTAGTTAACTCAGCCCCTGCTATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAGTCGTTACACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGAGTAGAGGCAAGGGGAGTATACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451306" ref_strand="+" ref_description="SGN-E451306 [cSTS-12-G24]">
      <seq>ccatttttcacttcacaatgaaacttcacatctcaactctcattactactattctcttatggctaacattcgtttcaattgttgaatcaactcagccacctttctcttgcgattcgtctaatccgcaaaccaaatcgttaaaattttgccaaacaggacttccaattagtgtacgtgtacaagaccttgtttctcgactcacactcgatgaaaaaatatctcaacttgttaactcagcccctgctatacccagactcggtattccggcgtacgagtggtggtcggaatcgttgcacggcgttggttctgccggaaaaggtattttcttcaatgggagtattgccggagccaccagttttccccaagttattctcactgctgctacttttgatgagaatctatggtaccgcattggtcaggtgattggagtagaggcaaggggagtatacaatgcaggtcaagcaataggtatgacattttgggcaccaaatataaatatatttagggacccaagatggggaagaggtcaagagacaccaggggaggacccaataatgactggcaaatatgcaattaggtatgtgagaggagtacaaggtgacagctttaatggtggacaacttaaaaaaggtcaccttcaagcttctgcttgctgcaaacatttcactgcttatgatttggatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="34844" stop="37048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35144" g_stop="35562" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36481" g_stop="36748" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="687" r_length="268" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E451306" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35144" e_stop="35562"/>
          <exon e_start="36481" e_stop="36748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCACTTCACAATGAAACTTCACATCTCAACTCTCATTACTACTATTCTCATATCTCTATCATTAGTTTCGATTGTTCAATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAGGTTAGTAACCAATTTAAAAATCTGTTTTGTTTAATTTTTTTTTTTTTAGGATAATGGACAATTAGCCGTTCAATTTATGTTTCAAATTTTTATGGACACACTTATACTATACTAAGGTTCTATTATTTCTAAATTTATTTTATAAGTAATTTTTTATCCATACTTAAACTGAAAAAGGATAAAAAATTACTTATAAAATAGATTCACGAATGATATGACTTTAGTACAGTATACGTATGTCTCTGAAAATTTCGGACATAATATTTACTTGTTTTTTACTTTTATACATTTTGAATCTTTCCGCGGCGATTTATTAACTTTAGACTTTAATTTTGCTAGCGAGGATTTGATTTTTTTACCTTATAGACTTTTTCTCCATTTCCCATGTTTAAAGGGAAGATTGATTTTGAAGGCACTATTCAAATTTTATCAACTTAAAAAAAGAAATAAAAATATATATATATATATAATTAACTTTGTGATTTAGAAGGAATATGCCCTGTCACTTAACATATATGCATTTTTTAAAAAATTGTAAAGTAAAGTTGAGATGTAATTTACTCACTTATTCTAAATTTTATGATTTTTTTATTTTTACCATATCTAAAATAATATTTTTTTTTCTTATGCAATTTATGAATGGTCAAAAGAGATTTCATTTTCTCGATAAATGTAGTATGTTAGTAAACTTTGAAATATAAAGTACACATTAGGTATGTAGATTAAAAATAGTACTCTTTCATTTGGATTGTCGGTGGATGTATGGATATTTATTGTGTCTCAAAATTCAATTATTGATAGTCCATCTTTTTTTTTTTATTTTACTGTATTAATGATTCATGTAACTTGTTACAATGAGTGTAGTGTAAAAAAAACTGTGAATTTTTATTGCTAATAATTTTGTAAGAATGAATTTAGGTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAGACACCAGGGGAGGACCCAATAATGACTGGCAAATATGCAATTAGGTATGTTAGAGGTGTACAAGGTGACAGTTTTAATGGTGGACAGCTTAAAAAAGGTCACCTTCAAGCTTCTGCTTGCTGCAAACATTTCACTGCTTATGATTTGGATCAAT</genome_strand>
        <mrna_strand>CCATTTTTCACTTCACAATGAAACTTCACATCTCAACTCTCATTACTACTATTCTCTTATGGCTAACATTCGTTTCAATTGTTGAATCAACTCAGCCACCTTTCTCTTGCGATTCGTCTAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACAAGACCTTGTTTCTCGACTCACACTCGATGAAAAAATATCTCAACTTGTTAACTCAGCCCCTGCTATACCCAGACTCGGTATTCCGGCGTACGAGTGGTGGTCGGAATCGTTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAGAATCTATGGTACCGCATTGGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGAGTAGAGGCAAGGGGAGTATACAATGCAGGTCAAGCAATAGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGACCCAAGATGGGGAAGAGGTCAAGAGACACCAGGGGAGGACCCAATAATGACTGGCAAATATGCAATTAGGTATGTGAGAGGAGTACAAGGTGACAGCTTTAATGGTGGACAACTTAAAAAAGGTCACCTTCAAGCTTCTGCTTGCTGCAAACATTTCACTGCTTATGATTTGGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272878" ref_strand="+" ref_description="SGN-E272878 [cLEM-25-D23]">
      <seq>gaatcaactcatccacctttctcttgcgattcgtcgaatccggaaacgcaaatcgttaaaattttgccaaacaggacttccaattagtgtacgtgtactataccttgtttctcgactcacactcgatgagaaaatatctcaactagttaactcagctcctgcaatacccagactcggtattccggcgtatgaatggtggtcggaatcattgcacggcgttggttctgccggaaaaggtattttcttcaatgggagtattgccggagccaccatttttccccaaattattctcactgctgctacttttgatgaaaatctatggtaccgcattggtcaggtgattggagtataggccaggggagtatacaatgcacgtcaagcaatctgtatgacattttgggcaccaaatataaatatatttatggatccaagatggggaagaggtcaagagacaccacgggaggacccaataatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="34928" stop="36922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35227" g_stop="35562" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36481" g_stop="36622" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="479" r_length="142" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E272878" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35227" e_stop="35562"/>
          <exon e_start="36481" e_stop="36622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAAC-CAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAGGTTAGTAACCAATTTAAAAATCTGTTTTGTTTAATTTTTTTTTTTTTAGGATAATGGACAATTAGCCGTTCAATTTATGTTTCAAATTTTTATGGACACACTTATACTATACTAAGGTTCTATTATTTCTAAATTTATTTTATAAGTAATTTTTTATCCATACTTAAACTGAAAAAGGATAAAAAATTACTTATAAAATAGATTCACGAATGATATGACTTTAGTACAGTATACGTATGTCTCTGAAAATTTCGGACATAATATTTACTTGTTTTTTACTTTTATACATTTTGAATCTTTCCGCGGCGATTTATTAACTTTAGACTTTAATTTTGCTAGCGAGGATTTGATTTTTTTACCTTATAGACTTTTTCTCCATTTCCCATGTTTAAAGGGAAGATTGATTTTGAAGGCACTATTCAAATTTTATCAACTTAAAAAAAGAAATAAAAATATATATATATATATAATTAACTTTGTGATTTAGAAGGAATATGCCCTGTCACTTAACATATATGCATTTTTTAAAAAATTGTAAAGTAAAGTTGAGATGTAATTTACTCACTTATTCTAAATTTTATGATTTTTTTATTTTTACCATATCTAAAATAATATTTTTTTTTCTTATGCAATTTATGAATGGTCAAAAGAGATTTCATTTTCTCGATAAATGTAGTATGTTAGTAAACTTTGAAATATAAAGTACACATTAGGTATGTAGATTAAAAATAGTACTCTTTCATTTGGATTGTCGGTGGATGTATGGATATTTATTGTGTCTCAAAATTCAATTATTGATAGTCCATCTTTTTTTTTTTATTTTACTGTATTAATGATTCATGTAACTTGTTACAATGAGTGTAGTGTAAAAAAAACTGTGAATTTTTATTGCTAATAATTTTGTAAGAATGAATTTAGGTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAGACACCAGGGGAGGACCCAATAATGACTG</genome_strand>
        <mrna_strand>GAATCAACTCATCCACCTTTCTCTTGCGATTCGTCGAATCCGGAAACGCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTATACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAATGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCATTTTTCCCCAAATTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGAGTATAGGCCAGGGGAGTATACAATGCACGTCAAGCAATCTGTATGACATTTTGGGCACCAAATATAAATATATTTATGGATCCAAGATGGGGAAGAGGTCAAGAGACACCACGGGAGGACCCAATAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272952" ref_strand="+" ref_description="SGN-E272952 [cLEM-25-C23]">
      <seq>atcaactcagccacctttctcttgcgattcgtcgaatccgcagaccaaatcgttaaaattttgccaaacaggacttccaattagtgtacgtgtactagaccttgtttctcgactcacactcgatgagaaaatatctcaactagttaactcagctcctgcaatacccagactcggtattccggcgtatgagtggtggtcggaatcattgcacggcgttggttctgccggaaaaggtattttcttcaatgggagtattgccggagccaccagttttccccaagttattctcactgctgctacttttgatgaaaatctatggtaccgcattggtcaggtgattggagtagaggccaggggagtatacaatgcaggtcaagcaatcggtatgacattttgggcaccaaatataaatatatttagggatccaagatggggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="34929" stop="36884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35229" g_stop="35562" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36481" g_stop="36584" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="438" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E272952" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35229" e_stop="35562"/>
          <exon e_start="36481" e_stop="36584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAGGTTAGTAACCAATTTAAAAATCTGTTTTGTTTAATTTTTTTTTTTTTAGGATAATGGACAATTAGCCGTTCAATTTATGTTTCAAATTTTTATGGACACACTTATACTATACTAAGGTTCTATTATTTCTAAATTTATTTTATAAGTAATTTTTTATCCATACTTAAACTGAAAAAGGATAAAAAATTACTTATAAAATAGATTCACGAATGATATGACTTTAGTACAGTATACGTATGTCTCTGAAAATTTCGGACATAATATTTACTTGTTTTTTACTTTTATACATTTTGAATCTTTCCGCGGCGATTTATTAACTTTAGACTTTAATTTTGCTAGCGAGGATTTGATTTTTTTACCTTATAGACTTTTTCTCCATTTCCCATGTTTAAAGGGAAGATTGATTTTGAAGGCACTATTCAAATTTTATCAACTTAAAAAAAGAAATAAAAATATATATATATATATAATTAACTTTGTGATTTAGAAGGAATATGCCCTGTCACTTAACATATATGCATTTTTTAAAAAATTGTAAAGTAAAGTTGAGATGTAATTTACTCACTTATTCTAAATTTTATGATTTTTTTATTTTTACCATATCTAAAATAATATTTTTTTTTCTTATGCAATTTATGAATGGTCAAAAGAGATTTCATTTTCTCGATAAATGTAGTATGTTAGTAAACTTTGAAATATAAAGTACACATTAGGTATGTAGATTAAAAATAGTACTCTTTCATTTGGATTGTCGGTGGATGTATGGATATTTATTGTGTCTCAAAATTCAATTATTGATAGTCCATCTTTTTTTTTTTATTTTACTGTATTAATGATTCATGTAACTTGTTACAATGAGTGTAGTGTAAAAAAAACTGTGAATTTTTATTGCTAATAATTTTGTAAGAATGAATTTAGGTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAG</genome_strand>
        <mrna_strand>ATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAGACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477493" ref_strand="+" ref_description="SGN-E477493 [cSTB-48-I10]">
      <seq>caagattgtatacagaaagcacaagccagtggaattatgtgctcttacaatagtgttaatggaatcccaagttgtgctaattataatcttttaactaaaacagctcgtcaacaatggggttttcatgggtacattacatccgattgtgacgcagttcaagtcatgcatgataaccacaggtatggaaatacaccagaagattcaacagcatttgcacttaaagctggcatggatatagactgtggggattacttgaagaaatacacaaaatcagcagtaatgaagaaaaaagtatcacaagttcatatagacagggctcttcacaatcttttttccataagaatgaggttaggattattcaatggggatccaagaaaacagctctttggaaacattagtcctagcctggtttgtgctccacaacaccaagaattagcccttgaagctgcaagaaatggcattgtcttgctcaagaataccggcaagttgcttcctctttccaaggcgaaaacgaactcccttgctgtcattggtcataatgccaacaatgcttatattcttcgtgggaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="38546" stop="40478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38846" g_stop="38973" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38974" i_stop="39085" i_length="112">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39086" g_stop="39183" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="226" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39184" i_stop="39830" i_length="647">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39831" g_stop="40178" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="574" r_length="348" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E477493" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38846" e_stop="38973"/>
          <exon e_start="39086" e_stop="39183"/>
          <exon e_start="39831" e_stop="40178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTGTATACAGAAAGCACAAGCCAGTGGAATTATGTGCTCTTACAACAGTGTTAATGGAATCCCAAGTTGTGCTAATTATAATCTTTTAACTAAAACAGCTCGTCAACAATGGGGTTTTCATGGGTAATCCTACTATTTAACGCACTATACTCTTATAAATAATCGATCTTTAACTTATATACACTAAGCAGTCTTTTTTTAATATATAGAAGTTAAACTCATTTAAATATTATAGGTACATTACGTCCGATTGTGACGCAGTTCAAGTCATGCATGATAACCACAGGTATGGAAATACACCAGAAGATTCAACAGCATTTGCACTTAAAGCTGGTATGCTTAAACCTTTGGTTTTTTTACTGCTTTATTTATTGATGTGACTAAATTAAGCTATGATAATAATCAATGTCACCAAAAAAAAAAAAAACGTTTTAAGTGGAAACAATCCATGTGCTCTCTAAGCTAGATTGGGCCTACAATTATCTTAACCCAATCTATTGAATTTATTTGGACCTAGGCCCCATGGTTTTGGTTTTGTGGGCTGAATGGAGCAAATAAAAGTCCAAAATGAAAGTCTATGATTTAAATTTATTTGTTTTCCTTTCCTTTTTAGTCTGTTTCAAAAGAAATGTTTTCTTTTCTTGTTTGGAAACTTTTAAAATTTTAACTTTTCTACAAGACATGTTTATGACCATAAGATTAAAGGACATGTTAGGTAAATTTGATCAGAAGTTTAAAAGTCTACTTCGTTGTTGCAATATGAACTAACCTTGCAATTGGCAGAGCCTTTGTCAAAAAATTATACTGAGTAGCTAGGTAAAAACATTTTTTATGTTTATCTATTACATATTGACACACCTTGTGTGTGATTTTACTTCTATATAATTTGACGTCTCTTAGTCAATATTGTGGCTCCGCCACTATACTATAATGGACTAACCATGTTGTTTCAAAATGTGATGGGAATTGAAATTTGATAGGCATGGATATAGACTGTGGGGATTACTTGAAGAAATACACAAAATCAGCAGTAATGAAGAAAAAAGTATCACAAGTTCATATAGACAGGGCTCTTCACAATCTTTTTTCCATAAGAATGAGGTTAGGATTATTCAATGGGGATCCCAGAAAACAGCTCTATGGAAACATTAGTCCTAGCCAAGTTTGTGCTCCACAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATG</genome_strand>
        <mrna_strand>CAAGATTGTATACAGAAAGCACAAGCCAGTGGAATTATGTGCTCTTACAATAGTGTTAATGGAATCCCAAGTTGTGCTAATTATAATCTTTTAACTAAAACAGCTCGTCAACAATGGGGTTTTCATGG................................................................................................................GTACATTACATCCGATTGTGACGCAGTTCAAGTCATGCATGATAACCACAGGTATGGAAATACACCAGAAGATTCAACAGCATTTGCACTTAAAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGGATATAGACTGTGGGGATTACTTGAAGAAATACACAAAATCAGCAGTAATGAAGAAAAAAGTATCACAAGTTCATATAGACAGGGCTCTTCACAATCTTTTTTCCATAAGAATGAGGTTAGGATTATTCAATGGGGATCCAAGAAAACAGCTCTTTGGAAACATTAGTCCTAGCCTGGTTTGTGCTCCACAACACCAAGAATTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTTCCTCTTTCCAAGGCGAAAACGAACTCCCTTGCTGTCATTGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272695" ref_strand="+" ref_description="SGN-E272695 [cLEM-21-A16]">
      <seq>tttgtgctccacaacaccaacaacttggcgttgaaactgatagaaatggcattgtcttgctcaagaataccggcaagtagctgcctctttccaaagcgaaaaccaactcccttgctgtcatcggtcataatgccaacaatgcttatattcttcttgggaactatgacggtcctccctgcaaatacatcgaaattctcaaggcattggttggttatgcaaagtcagttcagtaccaacagggttgcaatgcggctaactgcacgtctgctaacattgatcaagctgtcaacattgcaagaaatgcagattatgttgttttaatcatggggttggatcaaactcaagagagggaacaatttgatcgcgatgacttagtgctcccggggcagcaagaaaatcttatcaatagtgttgctaaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="39714" stop="40737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40014" g_stop="40437" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E272695" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40014" e_stop="40437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTCCACAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGC</genome_strand>
        <mrna_strand>TTTGTGCTCCACAACACCAACAACTTGGCGTTGAAACTGATAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTAGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCTTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367107" ref_strand="+" ref_description="SGN-E367107 [cLPT-5-O4]">
      <seq>caacaccaacaactagcccttgaagctgcaagaaatggcattgtcttgctcaagaataccggcaagttgctgcctctttccaaggcgaaaaccaactcccttgctgtcattggtcataatgccaacaatgcttatattctccgtgggaactatgacggtcctccttgcaaatacatcgaaatactcaaggcgttggttggttatgcaaagtcagttcagtaccaacagggttgcaatgcggctaactgcacgtctgctaacattgatcaagctgtcaacattgcaagaaatgcagattatgttgttttagtcatggggttggatcaaactcaagagagggaacaatttgatcgcgatgacttagtgctcccggggcagcaagaaaatcttatcaatagtgttgctaaagatgcaaagaagcctgttatattggtgattctctcaggaggtccagttgatatttctttcgcgaaatataaccctaaaataggaagcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="39725" stop="40824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40025" g_stop="40524" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E367107" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40025" e_stop="40524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTT</genome_strand>
        <mrna_strand>CAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAGGCGAAAACCAACTCCCTTGCTGTCATTGGTCATAATGCCAACAATGCTTATATTCTCCGTGGGAACTATGACGGTCCTCCTTGCAAATACATCGAAATACTCAAGGCGTTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAGTCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGATGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697454" ref_strand="+" ref_description="SGN-E697454 [FA03AA08]">
      <seq>gtgggaactatgacggtcctccctgcaaatacatcgaaattctcaaggcattggttggttatgcaaagtcagttcagtaccaacagggttgcaatgcggctaactgcacgtctgctaacattgatcaagctgtcaacattgcaagaaatgcagattatgttgttttaatcatggggttggatcaaactcaagagagggaacaatttgatcgcgatgacttagtgctcccggggcagcaagaaaatcttatcaatagtgttgctaaagctgcaaagaagcctgttatattggtgattctctcaggaggtccagttgatatttctttcgcgaaatataaccctaaaataggaagcattttgtgggctggctatcctggtgaagctggaggaattgctttagctgaaatcatatttggtgaacataatcctgggggtaaattacctgttacttggtatcctcaagcctttgtcaaaataccaatgacagatatgaggatgagacctgatcctaaaacaggttaccctggaagaacatatcgattctacaaaggtcccaaagtttacgagtttggatatggtcttagctacactacttattcctatggattccactctgccactccaaacacaatccagttaaatcaattattatctgtaaagacagttgaaaattcagactcaatccgttacacgtttgtggatgaaataggaagtgacaactgtgagaaggcgacattctcagctcatgttagtgttgaaaactcacgggaaatggatggtaagcatccagtactacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="39867" stop="41352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40167" g_stop="40595" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40682" g_stop="41052" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="800" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E697454" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40167" e_stop="40595"/>
          <exon e_start="40682" e_stop="41052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTGGTAAGACTTGATCACTTCGTTACGATTTTTCCCCCTTCCTCAAACATGCTTGATTTTGACAACGACAACGTTTTTCTTAATGTCAGGGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTT</genome_strand>
        <mrna_strand>GTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG......................................................................................GGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGACATTCTCAGCTCATGTTAGTGTTGAAAACTCACGGGAAATGGATGGTAAGCATCCAGTACTACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266110" ref_strand="+" ref_description="SGN-E266110 [cLEI-6-H5]">
      <seq>tccctgcaaatacatcgaaattctcaaggcattggttggttatgcaaagtcagttcagtaccaacagggttgcaatgcggctaactgcacgtctgctaacattgatcaagctgtcaacattgcaagaaatgcagattatgttgttttaatcatggggttggatcaaactcaagagagggaacaatttgatcgcgatgacttagtgctcccggggcagcaagaaaatcttatcaatagtgttgctaaagctgcaaagaagcctgttatattggtgattctctcaggaggtccagttgatatttctttcgcgaaatataaccctaaaataggaagcattttgtgggctggctatcctggtgaagctggaggaattgctttagctgaaatcatatttggtgaacataatcctgggggtaaattacctgttacttggtatcctcaagcctttgtcaaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="39886" stop="41029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40186" g_stop="40595" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40682" g_stop="40729" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="458" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E266110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40186" e_stop="40595"/>
          <exon e_start="40682" e_stop="40729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTGGTAAGACTTGATCACTTCGTTACGATTTTTCCCCCTTCCTCAAACATGCTTGATTTTGACAACGACAACGTTTTTCTTAATGTCAGGGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATAC</genome_strand>
        <mrna_strand>TCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG......................................................................................GGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603893" ref_strand="+" ref_description="SGN-E603893 [67082]">
      <seq>ctgttatattggtgattctctcaggaggtccagtcgatatttctttcgcgaaatataaccctaaaataggaagcattttgtgggctggctatcctggtgaagctggaggaattgctttagctgaaatcatatttggtgaacataatcctgggggtaaattacctgttacatggtatcctcaagcctttgtcaaaataccaatgacagacatgaggatgagacctgatccaaaaacaggttaccctggtagaacatatcgattctacaaaggtcccaaagtttacgagtttggatatggtcttagctacacaacttattcctatggattccactctgccactccaaacacaatccagttaaatcaattatcatctgtaaaggcagtagaaaattcagactcaatccgttacacgtctgtggatgaaataggaagtgacaactgtgagaaggcgaaattctcagctcatgttagtgtggaaaactcaggggaaatggatggtaagcatccagtactactttttgtgaaacaggacaaagcgcgaaatggaagtcctatcaaacagttagttggattccaaagtgtaagcttgaaggcaggggagaattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="40146" stop="41439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40446" g_stop="40595" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40682" g_stop="41139" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="608" r_length="458" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E603893" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40446" e_stop="40595"/>
          <exon e_start="40682" e_stop="41139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTGGTAAGACTTGATCACTTCGTTACGATTTTTCCCCCTTCCTCAAACATGCTTGATTTTGACAACGACAACGTTTTTCTTAATGTCAGGGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCA</genome_strand>
        <mrna_strand>CTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTCGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG......................................................................................GGGGTAAATTACCTGTTACATGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGACATGAGGATGAGACCTGATCCAAAAACAGGTTACCCTGGTAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACAACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATCATCTGTAAAGGCAGTAGAAAATTCAGACTCAATCCGTTACACGTCTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTGGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAGAATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705771" ref_strand="+" ref_description="SGN-E705771 [FA28AD06]">
      <seq>gttgatatttctttcgcgaaatataaccctaaaataggaagcattttgtgggctggctatcctggtgaagctggaggaattgctttagctgaaatcatatttggtgaacataatcctgggggtaaattacctgttacttggtatcctcaagcctttgtcaaaataccaatgacagatatgaggatgagacctgatcctaaaacaggttaccctggaagaacatatcgattctacaaaggtcccaaagtttacgagtttggatatggtcttagctacactacttattcctatggattccactctgccactccaaacacaatccagttaaatcaattattatctgtaaagacagttgaaaattcagactcaatccgttacacgtttgtggatgaaataggaagtgacaactgtgagaaggcgaaattctcagctcatgttagtgttgaaaactcaggggaaatggatggtaagcatccagtactactttttgtgaaacaggacaaagcgcgaaatggaagtcctatcaaacagttagttggattccaaagtgtaagcttgaaggcaggggaaaattcacaacttgtgtttgagatcagtccttgtgaacatcttagcagtgctaatgaagatggattaatgatgatagaagaaggatcgcgttaccttgtcgttggagatgcagagcatcctatcaacatcatgatatgaaaccaaaaaaaaaaatggttacaaaaagttatttttactattttgaatttcacaaatcctctctaaatacctataagagtggcaatgttgcagcagcaacagctaaagtataaatatcaagatgaatttgggctattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="40178" stop="41709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40478" g_stop="40595" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40682" g_stop="41402" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="839" r_length="721" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="846" polyA_stop="855"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E705771" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40478" e_stop="40595"/>
          <exon e_start="40682" e_stop="41402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTGGTAAGACTTGATCACTTCGTTACGATTTTTCCCCCTTCCTCAAACATGCTTGATTTTGACAACGACAACGTTTTTCTTAATGTCAGGGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGG</genome_strand>
        <mrna_strand>GTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG......................................................................................GGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAAATATCAAGATGAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609440" ref_strand="+" ref_description="SGN-E609440 [25449]">
      <seq>taaggcagtagaaaattcagactcaatccgttacacgtctgtggatgaaataggaagtgacaactgtgagaaggcgaaattctcagctcatgttagtgtggaaaactcaggggaaatggatggtaagcatccagtactactttttgtgaaacaggacaaagcgcgaaatggaagtcctatcaaacagttagttggattccaaagtgtaagcttgaaggcaggggagaattcacaacttgtgtttgagatcagtccttgtgaacatcttagcagtgctaatgaagatggattaatgatgatagaagaaggatcgcgttaccttgtcgttggagatgcagagcatcctattaacatcatgatgtgaaaccaaaaaaaattggttgcaaaaggttattgttactattttgaatttcaagaatcctctctaaatacctataggagtgagtggcaatgttgcagcagcaacagctaaagtatagatatcaagatgaatttgagctattatctctttgtcttgctagatatctattttattttctcctcttttttttcaagaactcgaaaagttttataagaaattcaagtcccaaccaaaaaaaaaaaaaaaagggaaccgagggggccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="40609" stop="41807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40908" g_stop="41489" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="609"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E609440" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40908" e_stop="41489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATA--A--GAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGGGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTCTTTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAA</genome_strand>
        <mrna_strand>TAAGGCAGTAGAAAATTCAGACTCAATCCGTTACACGTCTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTGGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAGAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATTAACATCATGATGTGAAACC--AAAAAAAATTGGTTGCAAAAGGTTATTGTTACTATTTTGAATTTCAAGAATCCTCTCTAAATACCTATAGGAGTGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGAGCTATTATCTCTTTGTCTTGCTAGATATCTATTTTATTTTCTCCTC-TTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324028" ref_strand="+" ref_description="SGN-E324028 [cTOC-3-C21]">
      <seq>ctactttttgtgaaacaggacaaagcgcgaaatggaagtcctatcaaacagttagttggattccaaagtgtaagcttgaaggcaggggaaaattcacaacttgtgtttgagatcagtccttgtgaacatcttagcagtgctaatgaagatggattaatgatgatagaagaaggatcgcgttaccttgtcgttggagatgcagagcatcctatcaacatcatgatatgaaaccaaaaaaaaaaatggttacaaaaagttatttttactatattgaatttcacaaatgctctctaaatacctataagagtggcaatgttgcagcagcaacagctaaagtatagatatcaagatgaatttgagctattatctctttctcttgctagatatctattttattttctcttcttttttttcaagaactcgaaaagttttataagaaattcaagtactactagcattaagatgttaaggatgctcactagtgtatctcattatgaattatagaacaaagacgttaacataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="40744" stop="41868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41044" g_stop="41575" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E324028" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41044" e_stop="41575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGGGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTCTTTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAAGTACTACTAGCATTAAGATGTTAAGGATGCTCACTAGTGTATCTCATTATGAATTATAGAACAAAGACGTTAACATAGACGGGGAG</genome_strand>
        <mrna_strand>CTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATATTGAATTTCACAAATGCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGAGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTC-TTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAAGTACTACTAGCATTAAGATGTTAAGGATGCTCACTAGTGTATCTCATTATGAATTATAGAACAAAGACGTTAACATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617702" ref_strand="+" ref_description="SGN-E617702 [66555]">
      <seq>tgctactgacctcacgtctgaggctcaaacaccacctatacctagacagagttcttggaaacatcccacagatcagaggcaaaatagaaattcacagtttcctggtaggaagcctgctctgaccagtcaaaattccatggaaccaaaattgggagccaaaaaacctccatccaagaagcaacctatagtaagtagcctgtgccaagatacatctgtagaacgccttattcgtgaggtgacaaacgagaagttttggcaacatccagatgaagcggagcttcagtgtgtacctggtcagtttgaatctgtggaagagtatgttaaggtgtttgaacccttgctctttgaggaatgccgggcacagctgtacagtacttgggaggagatggctgacacaggaacccatgtgagggtccatattaaaaatattgaacggcgagaaagaggatggtatgatgtaatcctttttccagattgtgagtggaagtggttattcaaagagggagatgtagcagttctctccactccacgtcctggatcagtccgatcacggagaagtggcacctcaacattcggggatggtgatgagcctgaaattagtggtcgtgtggctggtactgtgaggcgacacataccttattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="56225" stop="59146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56525" g_stop="56790" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56791" i_stop="57959" i_length="1169">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.730" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57960" g_stop="58139" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="446" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58140" i_stop="58571" i_length="432">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.441" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58572" g_stop="58667" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="542" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58668" i_stop="58745" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58746" g_stop="58846" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="644" r_length="102" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E617702" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56525" e_stop="56790"/>
          <exon e_start="57960" e_stop="58139"/>
          <exon e_start="58572" e_stop="58667"/>
          <exon e_start="58746" e_stop="58846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTGACCTCACGTCTGAGGCTCAAACACCACCTTTACCTAGACAGAGTTCTTGGAAACATCCCACAGATCAGAGGCAAAATAGAAATTCACAGTTATCTGGTAGGAAGCCTGCTCTGACCAGTCAAAATTCTATGGAACCAAAATTGGGAGCCAAAAAACCTCCATCCAAGAAGCAACCTATAGTAAGTAGCCCGTGTCAAGATACATCTGTAGAACGCCTTATTCGTGAGGTGACAAATGAGAAGTTTTGGCAACATCCAGGTACTTCTGAGTTCCACTTGATTATTATTCTCATCTTTCATCGTTGTGATTATTACCATTACTTTTTGTTGAATCAATGTTTGCTTCGTTAGTCTTCTGTGTTGATTTTTTTCCTTCTCTGTGCTTTTTAAGCTATGCCACATAACATGTAAACTGTTTCCTGTTGATTCTTGTTTGGGGTATGTCCAGCTTTCTAATGCTCCAACATAGGTTCAATAGAGAGCATTGCTCTTACTGTGCCTAGAAAGGTATATGATGGGAGATAAGCATTTATCTTATCAAAATTTGCATTTCCCTAGAAAATTGTTAGAATGAGTGGTGCACAAGCAAATCCCTTCACTTTTTCTTGTGCTCTTCAATAATGATTGTGTCATGAGATAGTACGGTAAATATCTTTGCTCTAGGATTTATTGGAAGAAGCAAGTATGTGTTTTTCCCACTGGACACTGGACCAAAGTGGTCATTCAAGATCTATTAACCCTTAGTAGTTTTCATTTTTCAAGAATTCTGGATCATAAAAGTTCTTTTTGTTTCCATTGGAAAGCTATAAACTGGTATCGTTTTACCAGCTGAACATTGTCGCGTCTCTCTTTCTTGAATGATCAGCCAGTTCCCTTATGATGGCTCAAGTGTATTCAATAACATGTTTTTTATACTACCACTTTCTTCTAGGTTGTTTTACTGGCCATATTTAGCCTCCTTCCTATGGAATGCTTGGTGAGGCAGGATTTACTGTTTTAGTTTATTAAGTGATGGTGTTTATATTACTCAGGCCCATGCATAGCAAAGGGGATCCTCCAGCTTCTTCTGGTGGGCATCTCAATCATCAGGATAGCTTGTGGGATGGAAGAATCTTTGTGTCATCTCAAAGTTGGCTATATGATTATTTGTGTATTTTTCATGATTTTTTTGACTAACCTGTTCATACGTATCTGGATAAAGTTCTGAGTACATCTTTGTGTTAGCTAACTTTAGTGTTTAATGATTCTTCGGTTTGCTCCTCTGAAGCACCTGTTTAGGCATGTTGAGTAGCGAGTCGCATCGTACTGCTCCTTGAGCCTCTTTTTTTTTTTAATTTCTTATTTGCCTTTGTTATGTCAAAAGTGGTGTGGTGCATGAAGTTCCATCATATGGTGTATTATTAAGGGGTGAACTTCTCTTCATGTCAGATGAAGCGGAGCTTCAGTGTGTACCTGGTCAGTTTGAATCTGTGGAAGAGTATGTTAAGGTGTTTGAACCCTTGCTCTTTGAGGAATGCCGGGCACAGCTGTACAGTACTTGGGAGGAGATGGCTGACACAGGAACCCATGTGAGGGTCCATATTAAAAATATTGAACGACGAGAAAGAGGTATAATGTGGCAACTTTACTTATATATTTATTTTGTTCTTTGACTTGGATATGAGGAACAACTTTGTTTATACCAAATACATAATTTGGGAAGCTATTCAATTCCGTCATCATTCAATGGGGACGAAGGAGGTCGAACAGTTAATGTTGTCACTTTGAGCTGTTCTTGAGGGATTCATTTTTTTCATTTTATCTCTAGGGTTTCCTAGTTTTTCAAGTATCAAGCATGACAAAATTTTACTGTATCAAGGATAACAGAAGTGTTTAGGAGCTCCACTTAATATAGCTTACTCTTAGAATGGCTTCACTCTGAGTGTAAACACGCGCACACACACACACATTAAAGAGAAAGTGTAAGAGCCGAGAAGTTTTGGTTGGCCTGGCTGAATTTCTTCCTCCCTTTCTAATCAGCACTGTGTTCCTTCTGCACAGGATGGTACGATGTAATCCTTTTTCCAGATTGTGAGTGGAAGTGGTTATTCAAAGAGGGAGATGTAGCAGTTCTCTCCACTCCACGTCCTGGATCAGGTTGGTACTATATAACATTCTGTTGGAGTGTATTTCAAATTTCCTATGTTTCTTAATATTTTCGTATCAATTAAGCAGTCCGATCACGGAGAAGTGGCACCTCAACATTTGGGGATGGTGATGAGCCTGAAATTAGTGGTCGTGTAGCTGGTACTGTGAGGCGACACATACC-TATTGAT</genome_strand>
        <mrna_strand>TGCTACTGACCTCACGTCTGAGGCTCAAACACCACCTATACCTAGACAGAGTTCTTGGAAACATCCCACAGATCAGAGGCAAAATAGAAATTCACAGTTTCCTGGTAGGAAGCCTGCTCTGACCAGTCAAAATTCCATGGAACCAAAATTGGGAGCCAAAAAACCTCCATCCAAGAAGCAACCTATAGTAAGTAGCCTGTGCCAAGATACATCTGTAGAACGCCTTATTCGTGAGGTGACAAACGAGAAGTTTTGGCAACATCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGCGGAGCTTCAGTGTGTACCTGGTCAGTTTGAATCTGTGGAAGAGTATGTTAAGGTGTTTGAACCCTTGCTCTTTGAGGAATGCCGGGCACAGCTGTACAGTACTTGGGAGGAGATGGCTGACACAGGAACCCATGTGAGGGTCCATATTAAAAATATTGAACGGCGAGAAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTATGATGTAATCCTTTTTCCAGATTGTGAGTGGAAGTGGTTATTCAAAGAGGGAGATGTAGCAGTTCTCTCCACTCCACGTCCTGGATCAG..............................................................................TCCGATCACGGAGAAGTGGCACCTCAACATTCGGGGATGGTGATGAGCCTGAAATTAGTGGTCGTGTGGCTGGTACTGTGAGGCGACACATACCTTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270007" ref_strand="+" ref_description="SGN-E270007 [cLEM-7-H10]">
      <seq>aagagtcgtgatgaagtttatgggtggatgcaccagttgagagctcgtgaagcgcagttgtcacagcagatagctggccttcaaagagaactgacagttgctgcagctgctggtcgtgcacagggatctgttggagttgaccctgatgttcttatggctagggaccaaaatcgagatactctattgcagaaccttgcggcagtggttgagaatagagataaaatactggtggagatgtcccgtcttctgattttggagagtaggttccgtggtggtaacaatttcaacatggaggaagctcgtgctagtctggaggctagttttgccaatgaagctgaaattgtcttcactactgtctcaagtagtgggagaaaattattctctcgtcttacccatggttttgacatggtagtcattgatgaagcagcccaggccagtgaagtaggagtccttcctcctctttctcttggtgcagcacgatgtgttcttgttggggatccgcagcagcttcctgctacagttatcagcaaagcagctggaactttgatgtacagtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="59544" stop="60701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59844" g_stop="60401" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E270007" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59844" e_stop="60401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCTCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGA</genome_strand>
        <mrna_strand>AAGAGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCGCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422400" ref_strand="+" ref_description="SGN-E422400 [STM-40-I24]">
      <seq>acgagggagggagagagagagagtcgtgatgaagtttatgggtggatgcaccagttngagagctcgtgaatctcagttgtcgcagcagatagctggccttcaaagagaactaacagttgctgcagctgctggtcgtgcacagggatctgttggagttgaccctgatgttcttatggctagggaccaaaatcgagatactctattgcagaaccttgcggcagtggttgagaatagagataaaatactggtggagatgtcccgccttctgattttagagagtaggttccgtggtggtaacaatttcaacatggaggaagctcgtgctagtctggaggctagttttgccaatgaagctgaaattgttttcactactgtctcaagtagtgggagaaaattattctctcgtcttacccatggttttgacatggtagtcattgatgaagcagcccaggccagtgaagtaggagtccttcctcctctttctcttggtgcagcacgatgtgttcttgttggggatccgcagcagcttcctgctacggttatcagcaaggcagctggaactttgatgtacagtagaagcctctttgagaggtttcagcaagcaagctgcccaactatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="59540" stop="60743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59847" g_stop="60443" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="619" r_length="598" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E422400" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59847" e_stop="60443"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGTGATGAAGTTTATGGGTGGATGCACCAGTT-GAGAGCTCGTGAAGCTCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGAAGCCTCTTTGAGAGGTTTCAGCAAGCAGGCTGCCCAACTATG</genome_strand>
        <mrna_strand>AGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTNGAGAGCTCGTGAATCTCAGTTGTCGCAGCAGATAGCTGGCCTTCAAAGAGAACTAACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGCCTTCTGATTTTAGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTTTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACGGTTATCAGCAAGGCAGCTGGAACTTTGATGTACAGTAGAAGCCTCTTTGAGAGGTTTCAGCAAGCAAGCTGCCCAACTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448303" ref_strand="+" ref_description="SGN-E448303 [cSTS-2-H5]">
      <seq>gagggagagagagagagtcgtgatgaagtttatgggtggatgcaccagttgagagctcgtgaatctcagttgtcgcagcagatagctggccttcaaagagaactaacagttgctgcagctgctggtcgtgcacagggatctgttggagttgaccctgatgttcttatggctagggaccaaaatcgagatactctattgcagaaccttgcggcagtggttgagaatagagataaaatactggtggagatgtcccgccttctgattttagagagtaggttccgtggtggtaacaatttcaacatggaggaagctcgtgctagtctggaggctagttttgccaatgaagctgaaattgttttcactactgtctcaagtagtgggagaaaattattctctcgtcttacccatggttttgacatggtagtcattgatgaagcagcccangccagtgaagtaggagtccttcctcctctttctcttggtgcagcacgatgtgttcttgttggggatccgcagcagcttcctgctacggttatcagcaaggcagctggaactttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="59540" stop="60693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59847" g_stop="60393" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="562" r_length="547" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E448303" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59847" e_stop="60393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCTCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGT</genome_strand>
        <mrna_strand>AGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAATCTCAGTTGTCGCAGCAGATAGCTGGCCTTCAAAGAGAACTAACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGCCTTCTGATTTTAGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTTTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCANGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACGGTTATCAGCAAGGCAGCTGGAACTTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559724" ref_strand="+" ref_description="SGN-E559724 [19266]">
      <seq>gttatcagcaaagcagctggaactttgatgtacagtagaagcctctttgagaggtttcagcaagcaggctgcccaactatgttgttatcagtgcagtacaggatgcacccacaaattagggattttccttctaggtacttttatcaaggccgccttagtgatagtgaaagtgttgtgaatctgcctgacgaagtttactacaaggagcctttactgaagccttacatcttttatgacattacacatggtcgggaatctcatagaggtggatctgtttcatatcagaatacacatgaagcacagttctgtcttcgtttgtatgagcatcttcaaaagacttgtaaatctcttggtgttgggaaggttactgtaggtataatcactccatacaagctgcaacttaaatgcctccaaagggagtttggggatgttttaaattctgaagaaggaaaggacatttacataaatactgtggatgctttccagggtcaagagcgtgatgttattataatgtcatgtgtgcgtgcctcaggtcatggggttgggtttgttgcagatatacggcgaatgaatgttgctcttactcgtgcaagacgagctctttgggtaatgggtaatgccaatgctctggtgcaatcagaagattgggctgcattgattgctgatgccaaaaccagaaaatgttacatggacatggatactttgcctaaggacttcttgctacccaaggcagttctcatgctcctccacagaccaatatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="60063" stop="61538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60363" g_stop="60968" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60969" i_stop="61080" i_length="112">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61081" g_stop="61238" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="763" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E559724" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60363" e_stop="60968"/>
          <exon e_start="61081" e_stop="61238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGAAGCCTCTTTGAGAGGTTTCAGCAAGCAGGCTGCCCAACTATGTTGTTATCAGTGCAGTACAGGATGCACCCACAAATTAGGGATTTTCCTTCTAGGTACTTTTATCAAGGTCGTCTTAGTGATAGTGAAAGTGTTGTCAATCTGCCTGACGAAGTTTACTACAAAGACTCTTTACTAAAGCCTTACATCTTTTATGACATTACACATGGTCGGGAATCACATAGAGGTGGATCCGTTTCATATCAGAATACACATGAAGCACAGTTCTGTCTTCGTTTGTATGAGCATCTTCAAAAAACTTGTAAATCTCTTGGTGTTGGGAAGGTCACTGTAGGTATAATCACTCCATACAAGCTGCAACTTAAATGCCTCCAAAGGGAGTTCGGGGATGTTTTAAATTCTGAAGAAGGAAAGGACATTTACATAAATACTGTTGATGCTTTCCAGGGTCAAGAGCGTGATGTTATTATAATGTCATGTGTGCGTGCCTCAGGTCATGGAGTTGGGTTTGTTGCAGATATACGGCGAATGAACGTTGCTCTTACTCGTGCAAGACGAGCTCTTTGGGTATGTTACTTCGGTCTCTGCTTATTTGCATAATGCTATATTCATAATCTATACGTTCAAACGGCAACATAGGAGTCAATGTTAACTTTAATCTTTATTGTTCTCTTAACAGGTAATGGGTAATGCCAATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTC</genome_strand>
        <mrna_strand>GTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGAAGCCTCTTTGAGAGGTTTCAGCAAGCAGGCTGCCCAACTATGTTGTTATCAGTGCAGTACAGGATGCACCCACAAATTAGGGATTTTCCTTCTAGGTACTTTTATCAAGGCCGCCTTAGTGATAGTGAAAGTGTTGTGAATCTGCCTGACGAAGTTTACTACAAGGAGCCTTTACTGAAGCCTTACATCTTTTATGACATTACACATGGTCGGGAATCTCATAGAGGTGGATCTGTTTCATATCAGAATACACATGAAGCACAGTTCTGTCTTCGTTTGTATGAGCATCTTCAAAAGACTTGTAAATCTCTTGGTGTTGGGAAGGTTACTGTAGGTATAATCACTCCATACAAGCTGCAACTTAAATGCCTCCAAAGGGAGTTTGGGGATGTTTTAAATTCTGAAGAAGGAAAGGACATTTACATAAATACTGTGGATGCTTTCCAGGGTCAAGAGCGTGATGTTATTATAATGTCATGTGTGCGTGCCTCAGGTCATGGGGTTGGGTTTGTTGCAGATATACGGCGAATGAATGTTGCTCTTACTCGTGCAAGACGAGCTCTTTGG................................................................................................................GTAATGGGTAATGCCAATGCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCAG-TTCTCATGCTCCTCCACAGACCAATATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577250" ref_strand="+" ref_description="SGN-E577250 [34082]">
      <seq>attttccttctaggtacttttatcaaggccgccttagtaatagtgaaagtgttgtgaatctgcctgacgaagtttactacaaggagcctttactgaagccttacatcttttatgacattacacatggtcgggaatctcatagaggtggatctgtttcatatcagaatacacatgaagcacagttctgtcttcgtttgtatgagcatcttcaaaagacttgtaaatctcttggtgttgggaaggttactgtaggtataatcactccatacaagctgcaacttaaatgcctccaaagggagtttggggatgttttaaattctgaagaaggaaaggacatttacataaatactgtggatgctttccagggtcaagagcgtgatgttattataatgtcatgtgtgcgtgcctcaggtcatggggttgggtttgttgcagatatacggcgaatgaatgttgctcttactcgtgcaagacgagctctttgggtaatgggtaatgccaatgctctggtgcaatcagaagattgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="60184" stop="61424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60484" g_stop="60968" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60969" i_stop="61080" i_length="112">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61081" g_stop="61124" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="529" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E577250" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60484" e_stop="60968"/>
          <exon e_start="61081" e_stop="61124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCTTCTAGGTACTTTTATCAAGGTCGTCTTAGTGATAGTGAAAGTGTTGTCAATCTGCCTGACGAAGTTTACTACAAAGACTCTTTACTAAAGCCTTACATCTTTTATGACATTACACATGGTCGGGAATCACATAGAGGTGGATCCGTTTCATATCAGAATACACATGAAGCACAGTTCTGTCTTCGTTTGTATGAGCATCTTCAAAAAACTTGTAAATCTCTTGGTGTTGGGAAGGTCACTGTAGGTATAATCACTCCATACAAGCTGCAACTTAAATGCCTCCAAAGGGAGTTCGGGGATGTTTTAAATTCTGAAGAAGGAAAGGACATTTACATAAATACTGTTGATGCTTTCCAGGGTCAAGAGCGTGATGTTATTATAATGTCATGTGTGCGTGCCTCAGGTCATGGAGTTGGGTTTGTTGCAGATATACGGCGAATGAACGTTGCTCTTACTCGTGCAAGACGAGCTCTTTGGGTATGTTACTTCGGTCTCTGCTTATTTGCATAATGCTATATTCATAATCTATACGTTCAAACGGCAACATAGGAGTCAATGTTAACTTTAATCTTTATTGTTCTCTTAACAGGTAATGGGTAATGCCAATTCTCTGGTGCAATCAGAAGATTGGGC</genome_strand>
        <mrna_strand>ATTTTCCTTCTAGGTACTTTTATCAAGGCCGCCTTAGTAATAGTGAAAGTGTTGTGAATCTGCCTGACGAAGTTTACTACAAGGAGCCTTTACTGAAGCCTTACATCTTTTATGACATTACACATGGTCGGGAATCTCATAGAGGTGGATCTGTTTCATATCAGAATACACATGAAGCACAGTTCTGTCTTCGTTTGTATGAGCATCTTCAAAAGACTTGTAAATCTCTTGGTGTTGGGAAGGTTACTGTAGGTATAATCACTCCATACAAGCTGCAACTTAAATGCCTCCAAAGGGAGTTTGGGGATGTTTTAAATTCTGAAGAAGGAAAGGACATTTACATAAATACTGTGGATGCTTTCCAGGGTCAAGAGCGTGATGTTATTATAATGTCATGTGTGCGTGCCTCAGGTCATGGGGTTGGGTTTGTTGCAGATATACGGCGAATGAATGTTGCTCTTACTCGTGCAAGACGAGCTCTTTGG................................................................................................................GTAATGGGTAATGCCAATGCTCTGGTGCAATCAGAAGATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309545" ref_strand="+" ref_description="SGN-E309545 [cTOA-3-M7]">
      <seq>aattctctggtgcaatcagaagattgggctgcattgattgctgatgccaaaaccagaaaatgttacatggacatggatactttgcctaaggacttcttgctacccaaggctgcttctcatgctcctccacagaccaatatgtctaataatcgaggtttaagatctgggttacgacatagaatatatgatccacacatggagcccaggtcaggaacaccttcagaagatgatgaaaaaccaaatgcattatatgtaaggaatggaagttataggcctcctaagccctcactggacaattcgttgaatgattttgatcaacctgctgatagatctagagatgcctggcaaaatggtatacagaggaggcaaaatacagctggaattgggagaagagacctgtaattggtgtccatgaatgtgccacatatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="60796" stop="61826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61096" g_stop="61526" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E309545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61096" e_stop="61526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTCTAATAATCGAGGTTTAAGATCTGGGTTACGACATAGAATATATGATCCACACATGGAGCCCAGGTCAGGAACACCTTCAGAAGATGATGAAAAACCAAATGCATTATATGTAAGGAATGGAAGTTATAGGCCTCCTAAGCCCTCACTGGACAATTCGTTGAATGATTTTGATCAACCTGCTGATAGATCTAGAGATGCCTGGCAAAATGGTATACAGAGGAGGCAAAATACAGCTGGAATTGGGAGAAGAGACCTGTAATTGGTGTCCATGAATGTGCCACATATCAC</genome_strand>
        <mrna_strand>AATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTCTAATAATCGAGGTTTAAGATCTGGGTTACGACATAGAATATATGATCCACACATGGAGCCCAGGTCAGGAACACCTTCAGAAGATGATGAAAAACCAAATGCATTATATGTAAGGAATGGAAGTTATAGGCCTCCTAAGCCCTCACTGGACAATTCGTTGAATGATTTTGATCAACCTGCTGATAGATCTAGAGATGCCTGGCAAAATGGTATACAGAGGAGGCAAAATACAGCTGGAATTGGGAGAAGAGACCTGTAATTGGTGTCCATGAATGTGCCACATATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E422401" ref_strand="-" ref_description="SGN-E422401 [STM-40-I24]">
      <seq>agattataatggtaaatgtttgaaataaatgatgttagtatatgcttgcttcggttgggatgagaaggaaaaaagcttatctcagcaaatgatcttgaatatacagccattcggctggaaaatggcaaccctctatgattgcttctctgtttatgatatataccatcgagactgaccctagagactttgcagcatggtgtaagtagtatgtctggccttgacaagacaactagtccatgaaagaagcccaggacagagagggaactgaacttggccatgtggggatattgtttcagaaagttaccgaactcattgaaggctctgaacatggaactctggtcagatggcaagtctgtgatttgcagaaccattacgagctgctgatgagcaagtcacaggaaatcatataaactgactgagtagagtcccaaatgttgatatggagggacctggaagatagcaactagttctgtacatattcgtgtggagagcataattcttttcattaggtggtagtctcatacttagggatgttgcagtactttttgttatccttctcaaatgaaatcttgaagttcatatcttgtcttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="61627" stop="62804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61927" g_stop="62524" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="602"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E422401" ref_strand="-">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422401" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61927" e_stop="62524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTATAATGGTAAATGTTTGGAATAAATGATGTTAGTATATGCTTGCTTTGGTTGGTATGAGAAGGAAAAGGCTTCATCTCAGCAAATGATCTTTTGAATATACAGCCATTCGGCTGGAAAATGGCAACCCTTTATGATTGCTTCTATGTTGATGATATATACCACCAAGACTTGACCCTTGAGACTTTGCAGCATGGCGTAAGTAGTAAGTCTGGCCTTGACAAGACAACTAGTCCATGAAAGAAACCCAGGACAGAGAGAGAACTGAACTTGGCCATGTGGGGAAATTGTTTTGAGAAAGTTACCGAACTCATTGTAGGCTCTGAAGATGGAACTCTTGTCAGATGGCAAGTCTGTGATTTGCAGAACCATTACGAGCTGCTGATGAACAAGTCACAGGAACACATATAGACTGACTCAGTAGAGTCCCAAGTGTTGATATGGAGGGACATGGAAGATAGCAACTAGTTCTGTACATATTCATGTGGAGAAAATAATTCTTTTCATTAGGTGGGGTAGTCTCATACATAGGAATATTGCAGTACTTTTTGTTATCCTTCTAAAATGAAATCTTGTTCTTCAGATCTTGTCTTCT</genome_strand>
        <mrna_strand>AGATTATAATGGTAAATGTTTGAAATAAATGATGTTAGTATATGCTTGCTTCGGTTGGGATGAGAAGGAAAAAAGCTTATCTCAGCAAATGATC--TTGAATATACAGCCATTCGGCTGGAAAATGGCAACCCTCTATGATTGCTTCTCTGTTTATGATATATACCATCGAGAC-TGACCCTAGAGACTTTGCAGCATGGTGTAAGTAGTATGTCTGGCCTTGACAAGACAACTAGTCCATGAAAGAAGCCCAGGACAGAGAGGGAACTGAACTTGGCCATGTGGGGATATTG-TTTCAGAAAGTTACCGAACTCATTGAAGGCTCTGAACATGGAACTCTGGTCAGATGGCAAGTCTGTGATTTGCAGAACCATTACGAGCTGCTGATGAGCAAGTCACAGGAAATCATATAAACTGACTGAGTAGAGTCCCAAATGTTGATATGGAGGGACCTGGAAGATAGCAACTAGTTCTGTACATATTCGTGTGGAGAGCATAATTCTTTTCATTAGGT--GGTAGTCTCATACTTAGGGATGTTGCAGTACTTTTTGTTATCCTTCTCAAATGAAATCTTGAAGTTCATATCTTGTCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322211" ref_strand="+" ref_description="SGN-E322211 [cTOB-24-L9]">
      <seq>aaagacttttgagggaccagaagtaaattaccttacctgtttgctggttcagattttgaccattttgtcctttgtcgtcaccaagaggactatcttcagatttttctcacatggtgaatgctattcatacatataatggattattttccattatatatatgtttagtcactgtaaacaatgtacaataacctttttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagaatttgcaatcccatacagttgctaatacggggagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66334" stop="69442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66634" g_stop="66937" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68487" i_length="1550">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.645" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68488" g_stop="68522" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="339" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68523" i_stop="68849" i_length="327">
            <donor d_prob="0.720" d_score="0.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="464" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69047" g_stop="69142" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="560" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E322211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66634" e_stop="66937"/>
          <exon e_start="68488" e_stop="68522"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACTTTTGAGGGACCAGAAGTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGC</genome_strand>
        <mrna_strand>AAAGACTTTTGAGGGACCAGAAGTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAATCCCATACAGTTGCTAATACGGGGAG.......................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322034" ref_strand="+" ref_description="SGN-E322034 [cTOB-29-L18]">
      <seq>gtaaattaccttacctgtttgctggttcagattttgaccattttgtcctttgtcgtcaccaagaggactatcttcagatttttctcacatggtgaatgctattcatacatataatggattattttccattatatatatgtttagtcactgtaaacaatgtacaataacctttttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaagcagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66356" stop="69464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66656" g_stop="66937" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="407" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69164" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="525" r_length="118" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E322034" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66656" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTA</genome_strand>
        <mrna_strand>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAAGCAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323453" ref_strand="+" ref_description="SGN-E323453 [cTOC-7-M4]">
      <seq>aggactatcttcagatttttctcacatggtgaatgctatgcatacatataatggattattttccattatatatatgtttagtcactgtaaacaatgtacaataacctttttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66419" stop="69530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66719" g_stop="66937" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="344" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69230" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="529" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E323453" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66719" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGG-TACTGT</genome_strand>
        <mrna_strand>AGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATGCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341862" ref_strand="+" ref_description="SGN-E341862 [cTOF-9-D24]">
      <seq>ctatcttcagatttttctacatggtgaatgctattcatacatataatggattattttccattatatatatgtttagtcactgtaaacaatgtacaataacctttttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgtggccagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggcccagttcttgtcatgagaacctcgttgccagaacactaagtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66423" stop="70427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66723" g_stop="66937" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="339" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69223" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="516" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69665" g_stop="69763" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="617" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70114" g_stop="70127" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="631" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E341862" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66723" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69223"/>
          <exon e_start="69665" e_stop="69763"/>
          <exon e_start="70114" e_stop="70127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGG-CCAGTTCTTGTCATGAG-ACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCT</genome_strand>
        <mrna_strand>CTATCTTCAGATTTTTCT-ACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCCAGTTCTTGTCATGAGAACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284634" ref_strand="+" ref_description="SGN-E284634 [cLES-3-H2]">
      <seq>ttttttttatctctgctaaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66528" stop="69531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66828" g_stop="66937" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="235" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69232" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="419" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E284634" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66828" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTA</genome_strand>
        <mrna_strand>TTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGG-A-TGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212364" ref_strand="+" ref_description="SGN-E212364 [cLEC-74-G24]">
      <seq>aaaagctgatcttctcccattggagtccggttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgtggccagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggccagttcttgtcatgagacctcgttgccagaacactaagtctctagaaggacagatgaagtatttagtatattgcctggaaaatgcagttgtaaatctcccaaaagaccaggaacagatgatttggttgatcgactttcatggattcactctgtcaaacctctcaatcaaggtgacaaaagaaacagctcatattttggaagactattatcctgaaagactgggaatagctattttatatgatccacccaaaatatttgaaccattttggaagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgtttgacatgagtctgggggagtctgcatttggcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66545" stop="71901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66845" g_stop="66937" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="69046" i_length="2109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69047" g_stop="69223" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="270" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69665" g_stop="69763" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="369" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70114" g_stop="70356" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="612" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71474" g_stop="71601" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="740" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E212364" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66845" e_stop="66937"/>
          <exon e_start="69047" e_stop="69223"/>
          <exon e_start="69665" e_stop="69763"/>
          <exon e_start="70114" e_stop="70356"/>
          <exon e_start="71474" e_stop="71601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAGGTAATTTGCCCTCAAACTTGCTTAAATTAGCAGTTGTTAATTTTGTGAATGTTACACTACAGGATTCTATTTCTTTATAATGTGTACTGAAAAACTTTTGACTATAATCATTGGCATGGACTGTGACCTCCAATGTTAATATTGAAAGTTGAAACTAAAGATCATCTTGACAATGAGAGATTTCCGTGACACCAGATAAAAGGATATCTTTTGGTATCTTAAGATTGCAGAAGTGAGGCTCATGCATGGGGTTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGG</genome_strand>
        <mrna_strand>AAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGGGGAGTCTGCATTTGGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335179" ref_strand="+" ref_description="SGN-E335179 [cTOE-1-P3]">
      <seq>gttcttgaccactgaagagattttcttcaactgtatccaattcttcaaatttacagttacccatcgtgcaatggttgaataattttgattacaccaatgaaattccctgaaactatgaatactagtgttacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagctgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctgtaacgtaaagaaagcacctaatatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattctctgggatgatgtggccagtgaagcacaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66574" stop="69991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66874" g_stop="66937" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.809" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="189" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69223" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="366" r_length="177" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69665" g_stop="69691" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="393" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E335179" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66874" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69223"/>
          <exon e_start="69665" e_stop="69691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACA</genome_strand>
        <mrna_strand>GTTCTTGACCACTGAAGAGATTTTCTTCAACTGTATCCAATTCTTCAAATTTACAGTTACCCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAATGGTTGAATAATTTTGATTACACCAATGAAATTCCCTGAAACTATGAATACTAGTGTTACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGCTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGTAACGTAAAGAAAGCACCTAATATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCTCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCCAGTGAAGCACAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335304" ref_strand="+" ref_description="SGN-E335304 [cTOE-1-P15]">
      <seq>ttcttgacaactgaggagattttcttcaactttatccaattcttcaaatttacagttacccagcgtgcagtggttgaataattttgattacaccagtgaaattccctgaaactatgagtactagtgtaacaaaatccatgccaaatggcttggagaattctttgaaaccggaagaagaacggaacaagattgatgagatgagaaagttgattgggccactttcaggtaagttggccctttactgttctgatgcatccatttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgtggccagtgaagcagaaacaggcaaaattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="66575" stop="70002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66875" g_stop="66937" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.809" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68850" g_stop="68974" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="188" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69223" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="365" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69665" g_stop="69702" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="403" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E335304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66875" e_stop="66937"/>
          <exon e_start="68850" e_stop="68974"/>
          <exon e_start="69047" e_stop="69223"/>
          <exon e_start="69665" e_stop="69702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAGGTAACAACTCCTCAATTCTCTTCTGGGTTTTTTATATTTTTGAAAATGATTTCTGGGTTTTTGTTTTCTTGAGCACCCAGTCTGTTTTGATGAGTTTTATAGCCTGTTTATTGAATTCTGTACTGTGATCACTACAGCTTATAGTAATCTTGCTTTCTAGCTTTTAGAAATCATGAGTTAGTTAGTTAGCAAGCTAAATAAGCTTATGTGGTGTGATGATTTGGACAATTGGACTTAAAATTATGTTAAAACCCCTTAAAGAGGGTAACTTGTTGATGTTTGCACTGTCTACTGGAAAGTTTGTGCAATTGGAAGTTTTCAATTACAAGGTTTGGTCTTGGTTTTGGTAGAAAAAGTGAAGTGCTGTTTTTTTGGGGATAAGAATCACTGAAATGAGGATGTGCACTTCGAATATTACCTAAAGTTGCTACTCGTGTTTGAGCGAACTGATTTAATGGATGATGATTGATGACTATCATTTCATCAATAACAAGTTCCTTTCTGATAGTTGAAATGAAGAAGAGCTTGATAGATTTTAAATGTTGTTTCGATCTCTTGCAGCTAAACCATTAATCTAGGTTTATATTGTTCCTTAACAGCTAAGTGGACATTGCAATATTTCCGTGTTTACATTTACCTGTTGCACCGTCTGGGAATGCGAACAGGAAATCATGTTAGGCATTAACACATTTTTCCTCCTCAAAGCTTCTCTTAGTTTGAATCTTGACTTTTCAATCTGGTAATTTGAAGGTTTTATACCAAACGTATTGCTCTGTAGAGTTTTTATCCGTCAAATATCTGGTTATGACATACCATGTGATGCTTAAATGGCTTAATGACATATTTGGCAATTGAAAAGGGAGTGCTAAACTTGTGGTGGTGGTGTCTAGTATAAAGCATTGATCAAGGAAGTGTGGGTAAAGAGAATGTTTTATTATCATTTTCTAGTTAGAACTTAGAATGTCATCAGTTTTGACTTTGGACTTCATATATCAATATCAGAAGATTTGTTTTGTTGCAAACTGCTGGTGAGTTCCACGTTGAGGTGCTAATGTACTGGTTAGAGGAACTAGAATCTTTAATGTAATATATCATAAGATATTATGATGAAGATACATAATGAGTTTTTTCATGCCTTTTAACATGGCTTACTAGTTTAAGGGCTAACATTCAAAATATTCAAATTCCGATTTTAGTTCAATGGAAGCTAACAAATGAAAACATGTTAAGGCTAGAAGTAAAAATACATGAAATACCAAGTCAAAGATGATAAATGAGGTGATACAAAGAACTTGTGGTCACTGCTAGGCGATTATGCCTTTCCCTGCATGAGTCCCACGAACCAATGAAGGCTGATTAGGTTTCGTCATCTACTATATAGTGCTCAATAGATTATCCTGGTTACACAAGTTGCAAGCAACAGGCAACAAGTTTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTA</genome_strand>
        <mrna_strand>TTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG........................................................................ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319199" ref_strand="+" ref_description="SGN-E319199 [cTOB-16-F2]">
      <seq>actaagagaagctttgaggaggaaaaatgtgttaatgcctaacatgatttcctgttcgcattcccagacggtgcaacaggtaaatgtaaacacggaaatattgcaatgtccacttagctgttaaggaacaatataaacctagattaatggtttagctgcaagagatcgaaacaacatttaaaatctatcaagctcttcttcatttcaactatcagaaaggaacttgttattgatgaaatgatagtcatcaatcatcatccattaaatcagttcgctcaaacacgagtagcaactttaggtaatattcgaagtgcacatcctcatttcagtgattcttatccccaaaaaaacagcacttcactttttctaccaaaaccaagaccaaaccttgtaattgaaaacttccaattgcacaaactttccagtagacagtgcaaacatcaacaagttaccctctttaaggggttttaacataattttaagtccaattgtgcaaatcatcacaccacataagcttatttagctcgctaactaactaactcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="67953" stop="66807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67653" g_stop="67107" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E319199" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67653" e_stop="67107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGAGAAGCTTTGAGGAGGAAAAATGTGTTAATGCCTAACATGATTTCCTGTTCGCATTCCCAGACGGTGCAACAGGTAAATGTAAACACGGAAATATTGCAATGTCCACTTAGCTGTTAAGGAACAATATAAACCTAGATTAATGGTTTAGCTGCAAGAGATCGAAACAACATTTAAAATCTATCAAGCTCTTCTTCATTTCAACTATCAGAAAGGAACTTGTTATTGATGAAATGATAGTCATCAATCATCATCCATTAAATCAGTTCGCTCAAACACGAGTAGCAACTTTAGGTAATATTCGAAGTGCACATCCTCATTTCAGTGATTCTTATCCCCAAAAAAACAGCACTTCACTTTTTCTACCAAAACCAAGACCAAACCTTGTAATTGAAAACTTCCAATTGCACAAACTTTCCAGTAGACAGTGCAAACATCAACAAGTTACCCTCTTTAAGGGGTTTTAACATAATTTTAAGTCCAATTGTCCAAATCATCACACCACATAAGCTTATTTAGCTTGCTAACTAACTAACTCATGAT</genome_strand>
        <mrna_strand>ACTAAGAGAAGCTTTGAGGAGGAAAAATGTGTTAATGCCTAACATGATTTCCTGTTCGCATTCCCAGACGGTGCAACAGGTAAATGTAAACACGGAAATATTGCAATGTCCACTTAGCTGTTAAGGAACAATATAAACCTAGATTAATGGTTTAGCTGCAAGAGATCGAAACAACATTTAAAATCTATCAAGCTCTTCTTCATTTCAACTATCAGAAAGGAACTTGTTATTGATGAAATGATAGTCATCAATCATCATCCATTAAATCAGTTCGCTCAAACACGAGTAGCAACTTTAGGTAATATTCGAAGTGCACATCCTCATTTCAGTGATTCTTATCCCCAAAAAAACAGCACTTCACTTTTTCTACCAAAACCAAGACCAAACCTTGTAATTGAAAACTTCCAATTGCACAAACTTTCCAGTAGACAGTGCAAACATCAACAAGTTACCCTCTTTAAGGGGTTTTAACATAATTTTAAGTCCAATTGTGCAAATCATCACACCACATAAGCTTATTTAGCTCGCTAACTAACTAACTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577137" ref_strand="+" ref_description="SGN-E577137 [33094]">
      <seq>ttcttgttagcattataaaaggaaaaacagatacgaggaatgttttgtaaatgtgatttaaacttcgtgcaactaatgtcatttctgagatggtcctaacttcaaggtttatgttcagaatttgcaatcccacacagttgctaatacggggagtggttgaataattttgaacacaccagtaaagttccctgaaactatgagtactggtccaacaaaatccacgccaaatggctttgagaattctttgagaccggaagaagaacagaacaagattgatgagataagaaagttgattgggccgctttcaggtaagttagccctttattgttctgatgcatccatttcaagatatttagcagctcaaagctggaatgtgaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgtggctagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggccagttcttgtcatgagacctcgttgccagaacactaagtctgtagaaggacagatgaagtatttagtatattgcatggaaaacgcagttgtaaatcttccagaagaccaggaacagatgatctggttggttgatttcgtggatacactctgtcaaatttcttcaatcaaggtgaaccaaaagaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="68070" stop="70568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68370" g_stop="68522" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68523" i_stop="68856" i_length="334">
            <donor d_prob="0.720" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68857" g_stop="68974" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="271" r_length="118" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69047" g_stop="69223" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="448" r_length="177" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69665" g_stop="69763" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="547" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70114" g_stop="70254" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="688" r_length="141" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E577137" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68370" e_stop="68522"/>
          <exon e_start="68857" e_stop="68974"/>
          <exon e_start="69047" e_stop="69223"/>
          <exon e_start="69665" e_stop="69763"/>
          <exon e_start="70114" e_stop="70254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAGGTATTTCTTCATACTCATGTCTTGCAAAAGTTCATCACTCTAACGGGGAAATGGTTCTCTTCTCTTTTATGTCCTAGACAACAAAGGGCTGCCTGAATAAATAATTATATGGGCTTTTATTTATTTTTGTTTTTTAATCTTAAAAAGATTTGGATAAGACAATGAAAAAGTTGCAACTATTTTCTGCTACATTTATGAGAGGAGGGGTTCCTTACAATTCTTGGCTCTTACTTGAGTTGTGTTTGTTCTGATCCGTGGTTATAGCTGTGTTCTTGTAAGGCTACACTGTTACAATGAAACTTTACTTTGTAGTCATTTTCATTACAGCGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAGGTATCTAAATTTAAGTTCCATTCATGGTTTTAAGCTGGATTATGCTAATAAATAGTACTTTATTTCTAGCAGATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTC-TCAATCAAG</genome_strand>
        <mrna_strand>TTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTAAACTTCGTGCAACTAATGTCATTTCTGAGATGGTCCTAACTTCAAGGTTTATGTTCAGAATTTGCAATCCCACACAGTTGCTAATACGGGGAG..............................................................................................................................................................................................................................................................................................................................................TGGTTGAATAATTTTGAACACACCAGTAAAGTTCCCTGAAACTATGAGTACTGGTCCAACAAAATCCACGCCAAATGGCTTTGAGAATTCTTTGAGACCGGAAGAAGAACAGAACAAG........................................................................ATTGATGAGATAAGAAAGTTGATTGGGCCGCTTTCAGGTAAGTTAGCCCTTTATTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAATGTGAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCTAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTGTAGAAGGACAGATGAAGTATTTAGTATATTGCATGGAAAACGCAGTTGTAAATCTTCCAGAAGACCAGGAACAGATGATCTGGTTGGTTGA-TTTCGTGGATACACTCTGTCAAATTTCTTCAATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242033" ref_strand="+" ref_description="SGN-E242033 [cLED-27-F21]">
      <seq>tttcaagatatttagcagctcaaagctggaacgtaaagaaggcagctaagatgcttaaagcgtccctgaagtggagactggatttcatgcctgaagaaattcgctgggatgatgtggccagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggccagttcttgtcatgagacctcgttgccagaacactaagtctctagaaggacagatgaagtatttagtatattgcctggaaaatgcagttgtaaatctcccaaaagaccaggaacagatgatttggttgatcgactttcatggattcactctgtcaaacctctcaatcaaggtgacaaaagaaacagctcatattttggaagactattatcctgaaagactgggaatagctattttatatgatccacccaaaatatttgaaccattttggaagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgtttgacatgagtctggtggagtctgcatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="68817" stop="71899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69117" g_stop="69223" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69665" g_stop="69763" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="206" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70114" g_stop="70356" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="449" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71474" g_stop="71599" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="575" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E242033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69117" e_stop="69223"/>
          <exon e_start="69665" e_stop="69763"/>
          <exon e_start="70114" e_stop="70356"/>
          <exon e_start="71474" e_stop="71599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTAATGAACACCCCCCTCCCCCCTCTCCCCCCCTCTGTAATGTTCTTTTTTACCATCTTCGAAAGTGTCTAGATGCTTGTTTGACCCTTATTTCTTGATAAACTTTTGGAACCTGCATTTATGGGTCTTTTTCTTGTCCTTTTTTGTTTTGTGGAGGAGAGAAAATGATGCTTTTATTAATTAAAATTAACGTCTTTTGAGATTTACATCTCCTCAATCGGTAGACTTTGGCATGATCTGCTTCATAAATATTATTTATCGGTGACATTTTTTTACAGATAAATTGTCTTGTGCATTACCTCAGTCTGTATCTGCAGGATTGTAACCTTGAAACGTGATAGTAGTATCTGTACTGATCATGTTGATAATAGTATCCTCTGTTCTTTCTTGCAATTTTTTTTAGTTCTTTTTTGAAAAGCATTTTCTTTGATACAGGATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAGGTAATTTGCCCTCAAACTTGCTTAAATTAGCAGTTGTTAATTTTGTGAATGTTACACTACAGGATTCTATTTCTTTATAATGTGTACTGAAAAACTTTTGACTATAATCATTGGCATGGACTGTGACCTCCAATGTTAATATTGAAAGTTGAAACTAAAGATCATCTTGACAATGAGAGATTTCCGTGACACCAGATAAAAGGATATCTTTTGGTATCTTAAGATTGCAGAAGTGAGGCTCATGCATGGGGTTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGC</genome_strand>
        <mrna_strand>TTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240093" ref_strand="+" ref_description="SGN-E240093 [cLED-32-C24]">
      <seq>ccagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggccagttcttgtcatgagacctcgttgccagaacactaagtctctagaaggacagatgaagcatttagtatattgcctggaaaatgcagttgtaaatctcccaaaagaccaggaacagatgatttggttgatcgactttcatggattcactctgtcaaacctctcaatcaaggtgacaaaagaaacagctcatattttggaagactattatcctgaaagactgggaatagctattttatatgatccacccaaaatatttgaaccattttggaagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgtttgacatgagtctggtggagtctgcatttggcggagatgataaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="69375" stop="71915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69675" g_stop="69763" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70114" g_stop="70356" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="332" r_length="243" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71474" g_stop="71615" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="474" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E240093" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69675" e_stop="69763"/>
          <exon e_start="70114" e_stop="70356"/>
          <exon e_start="71474" e_stop="71615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAGGTAATTTGCCCTCAAACTTGCTTAAATTAGCAGTTGTTAATTTTGTGAATGTTACACTACAGGATTCTATTTCTTTATAATGTGTACTGAAAAACTTTTGACTATAATCATTGGCATGGACTGTGACCTCCAATGTTAATATTGAAAGTTGAAACTAAAGATCATCTTGACAATGAGAGATTTCCGTGACACCAGATAAAAGGATATCTTTTGGTATCTTAAGATTGCAGAAGTGAGGCTCATGCATGGGGTTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTG</genome_strand>
        <mrna_strand>CCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTCTAGAAGGACAGATGAAGCATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242873" ref_strand="+" ref_description="SGN-E242873 [cLED-31-I1]">
      <seq>ccagtgaagcagaaacaggcaaaatttataggtcaaactataaagacaagcatgggaggccagttcttgtcatgagacctcgttgccagaacactaagtctctagaaggacagatgaagtatttagtatattgcctggaaaatgcagttgtaaatctcccaaaagaccaggaacagatgatttggttgatcgactttcatggattcactctgtcaaacctctcaatcaaggtgacaaaagaaacagctcatattttggaagactattatcctgaaagactgggaatagctattttatatgatccacccaaaatatttgaaccattttggaagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="69375" stop="71867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69675" g_stop="69763" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70114" g_stop="70356" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="332" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71474" g_stop="71567" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="426" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E242873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69675" e_stop="69763"/>
          <exon e_start="70114" e_stop="70356"/>
          <exon e_start="71474" e_stop="71567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAGGTAGGTTTCAGTTTGCTTTTTCTTTCTTGGGTAAAATACTTGTGTGTTACAATCGTATCGCTTATGATTTTCTTATCCAATTGGTTAATTGAGATAATAATTGCAAGGAAAATGAACATTTAAAACCATTTAAACTCAGTTATATACGCCTCAAAGCTACAACGTCTGTATCATTCTTTATGTGTTATTTATATTACCTCTATTTCATGAACTTGATTCAAATTGATCATGCTCGTATGTCAGCAACTAATAAATGTACTTCAAAAACTGCATTAATAAGTTATACTGATTAATGTTTGGCTACAAGGAACTAACACAAGCTTGATAACATTTTGAGTCGGTCCTTGCAGAACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAGGTAATTTGCCCTCAAACTTGCTTAAATTAGCAGTTGTTAATTTTGTGAATGTTACACTACAGGATTCTATTTCTTTATAATGTGTACTGAAAAACTTTTGACTATAATCATTGGCATGGACTGTGACCTCCAATGTTAATATTGAAAGTTGAAACTAAAGATCATCTTGACAATGAGAGATTTCCGTGACACCAGATAAAAGGATATCTTTTGGTATCTTAAGATTGCAGAAGTGAGGCTCATGCATGGGGTTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGT</genome_strand>
        <mrna_strand>CCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459375" ref_strand="+" ref_description="SGN-E459375 [cPRO-27-N13]">
      <seq>gtcaaatttctcaatcaaggtgacaaaagaaacggctcatattttgcaagactattatcctgaaagactggggatagctattttatatgatgcacccaaaatatttgaaccattttggaagctagcaaagccttttttggacccaaagactgtgagcaaagtccaatttatgtactcagaagaccccaacagcaagaaaatgatggaagaactgtttgacatgagtctggtggagtctgcatttggcggagatgataaggctgattttgatgtcaataaatatgctgagaggatgagagaagatgataaaaagttgtctgctttctggaagaaagacgatagttctgcatcaaatgcacaaccaactgtgacagctgatccctctttagagccaacaaattctgattctgattctgaagtcttagatgagaaagtagagaaaccttctcttgatgttgatgaagaggaattatcaattgtagaaactttgcctataactgcgaatgttatagcagtgtaactagatgctcacaacatgggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="69936" stop="72151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70236" g_stop="70356" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117">
            <donor d_prob="0.962" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71474" g_stop="71849" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="497" r_length="376" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E459375" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70236" e_stop="70356"/>
          <exon e_start="71474" e_stop="71849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAGGTAATTTGCCCTCAAACTTGCTTAAATTAGCAGTTGTTAATTTTGTGAATGTTACACTACAGGATTCTATTTCTTTATAATGTGTACTGAAAAACTTTTGACTATAATCATTGGCATGGACTGTGACCTCCAATGTTAATATTGAAAGTTGAAACTAAAGATCATCTTGACAATGAGAGATTTCCGTGACACCAGATAAAAGGATATCTTTTGGTATCTTAAGATTGCAGAAGTGAGGCTCATGCATGGGGTTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAA</genome_strand>
        <mrna_strand>GTCAAATTTCTCAATCAAGGTGACAAAAGAAACGGCTCATATTTTGCAAGACTATTATCCTGAAAGACTGGGGATAGCTATTTTATATGATGCACCCAAAATATTTGAACCATTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAAAGCCTTTTTTGGACCCAAAGACTGTGAGCAAAGTCCAATTTATGTACTCAGAAGACCCCAACAGCAAGAAAATGATGGAAGAACTGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATAAAAAGTTGTCTGCTTTCTGGAAGAAAGACGATAGTTCTGCATCAAATGCACAACCAACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAGGAATTATCAATTGTAGAAACTTTGCCTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341380" ref_strand="-" ref_description="SGN-E341380 [cTOE-23-I8]">
      <seq>taaattgcccatcttgtgagcatttacaaaactaaaaagttgaagacattgcctttagctacactgctttgacattcgcatttgtactgttacttccaggcaaagtttcttcaattgatgattcttcttcatcaacatcaagagaaggtttctctactttctcatctaagacttcagaatcagaatcagaatttgttggctctaaagagggatcagctgtcacagtaagttgtgcatttgatgcagaattatcgtctttcttccagaaagaagacaacttttcatcatcttctctcatcctctcagcatatttattgacatcaaaatcagccttatcatctccgccaaatgcagactccaccagactcatgtcaaacatttcttccatcattttcttgctgttggggtcatctgagtacataaaatggactttgctcgcagtctttgggtccaaaaaaggctttgctagctgcaccatttagataaacacatagaatcctgtagtgtaacattcacaaaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="72242" stop="70093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71942" g_stop="71455" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71454" i_stop="70429" i_length="1026">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70428" g_stop="70393" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="524" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E341380" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341380" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="71942" e_stop="71455"/>
          <exon e_start="70428" e_stop="70393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTGCCCATCTTGTGAGCATTTACAAAACTAAAAAGTTGAAGACATTGCCTTTAGCTACACTGCTTTGACATTCGCATTTGTACTGTTACTTCCAGGCAAAGTTTCTTCAATTGATGATTCTTCTTCATCAACATCAAGAGAAGGTTTCTCTACTTTCTCATCTAAGACTTCAGAATCAGAATCAGAATTTGTTGGCTCTAAAGAGGGATCAGCTGTCACAGTAAGTTGTGCATTTGATGCAGAATTATCGTCTTTCTTCCAGAAAGAAGACAACTTTTCATCATCTTCTCTCATCCTCTCAGCATATTTATTGACATCAAAATCAGCCTTATCATCTCCGCCAAATGCAGACTCCACCAGACTCATGTCAAACATTTCTTCCATCATTTTCTTGCTGTTGGGGTCATCTGAGTACATAAAATGGACTTTGCTCGCAGTCTTTGGGTCCAAAAAAGGCTTTGCTAGCTGCACCATTTAGATAAACAAAATAATAGGTTGCCTGGTAATCAAATGGAGATGCTGCAAATAAGGGATGTCTCATCTTAATATTTGAGAAAACAGAGTTCAAAGGGAATCTATTGGAATAAAGCAAATGTAACCTTAAGTAATGCAACAACTTGAATGCTTAAAATTAAAGCAGGCACATATTTTTGCTCTAATGGTTGCTAAATAACCCAACCAAATCTTGGGCGAGGATAAGTAATTAATATATAACTCACACTTTCCTGCTTTTATTATTCTTCAGAAAGCCTCTTATCTTTATCCAGTTAATTTTTTCTTGATCAAGTAAAACTAGCTTTCATCAAAATCCCTGATTCAGTTCTCACGTGCCGTTCTTTCCTCACTTAACTTTTTATAGTTTCTCTGTTTCAGTGTGTTCAGATTTCATGAAAATAGAAGTCCATGGTCATCTGATTGACAACATTGTCCTCATTCTTCTTACTCAATTCCATGCATCGCAATACATGAATTAAGTTTTCTACTGCAGACACTTAGCCTTCATTCAAAGTTTCAGCATTTCTGTCCTTTGGGAAAGCCATTGTTCGCACCAAAATCCATCAGCCATCTTACGACAACTGAATTTCTAAAAAGTAATTACAAACTATGCAAGACATGCAGACAATGTCTTGGAGTCCCAGAAAGCCAGAAGTCACTACAACTTGGGCTCAGTTTAGGCTATCAAAGCTAATCCCAGTCTGCATGATAACAAGTTACCAGCAAACTCATAGACCCAGAGTAAAGGACTAGGCCTACAGAAGAGTGATATAGGAGTATATACCAATTGCAAACACCAATTGACCATGCCGTCAGTCATGCAATTTTCATGACAACCCCATGCATGAGCCTCACTTCTGCAATCTTAAGATACCAAAAGATATCCTTTTATCTGGTGTCACGGAAATCTCTCATTGTCAAGATGATCTTTAGTTTCAACTTTCAATATTAACATTGGAGGTCACAGTCCATGCCAATGATTATAGTCAAAAGTTTTTCAGTACACATTATAAAGAAATAGAATCCTGTAGTGTAACATTCACAAAATTAA</genome_strand>
        <mrna_strand>TAAATTGCCCATCTTGTGAGCATTTACAAAACTAAAAAGTTGAAGACATTGCCTTTAGCTACACTGCTTTGACATTCGCATTTGTACTGTTACTTCCAGGCAAAGTTTCTTCAATTGATGATTCTTCTTCATCAACATCAAGAGAAGGTTTCTCTACTTTCTCATCTAAGACTTCAGAATCAGAATCAGAATTTGTTGGCTCTAAAGAGGGATCAGCTGTCACAGTAAGTTGTGCATTTGATGCAGAATTATCGTCTTTCTTCCAGAAAGAAGACAACTTTTCATCATCTTCTCTCATCCTCTCAGCATATTTATTGACATCAAAATCAGCCTTATCATCTCCGCCAAATGCAGACTCCACCAGACTCATGTCAAACATTTCTTCCATCATTTTCTTGCTGTTGGGGTCATCTGAGTACATAAAATGGACTTTGCTCGCAGTCTTTGGGTCCAAAAAAGGCTTTGCTAGCTGCACCATTTAGATAAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATAGAATCCTGTAGTGTAACATTCACAAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324821" ref_strand="+" ref_description="SGN-E324821 [cTOC-8-N10]">
      <seq>ttgtcatgaaaattgcatgactgacggcatggtcaattggtgtttgcaattggtatatactcctatatcactcttctgtaggcctagtcctttactctgggtctatgagtttgctggtaacttgttatcatgcagactgggattagctttgatagcctaaactgagcccaagttgtagtgacttctggctttctgggactccaagacattgtctgcatgtcttgcataatttgtaattactttttagaaattcagttgtcgtaagatggctgatggattttggtgcgaacaatggctttcccaaaggacagaaatgctgaaactttgaatgaaggctaagtgtttgcagtagaaaacttaattcatgtattgcgatgcatggaattgagtaagaagaatgaggacaatgttgtcaatcagatgaccatggacttctattttcatgaaatctgaacacactgaaacagagaaactataaaaagttaagtgaggaaagaacggcacgtgagaactgaatcagggattttgatgaaagctagttttacttgatcaagaaaaaattaactggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="70308" stop="71478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70608" g_stop="71178" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E324821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70608" e_stop="71178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATA</genome_strand>
        <mrna_strand>TTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAATTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTTTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375995" ref_strand="+" ref_description="SGN-E375995 [TUS-40-M12]">
      <seq>tttgctggtaacttgttatcatgcagactgggattagctttgatagcctaaactgagcccaagttgtagtgacttctggctttctgggactccaagacattgtctgcatgtcttgcatagtttgtaattactttttagaaattcagttgtcgtaagatggctgatggattttggtgcgaacaatggctttcccaaaggacagaaatgctgaaactttgaatgaaggctaagtgtctgcagtagaaaacttaattcatgtattgcgatgcatggaattgagtaagaagaatgaggacaatgttgtcaatcagatgaccatggacttctattttcatgaaatctgaacacactgaaacagagaaactataaaaagttaagtgaggaaagacggcacgtgagaactgaatcagggattttgatgaaagctagttttacttgatcaagaaaaaattaactggataaagataagaggctttctgaagaataataaaagcaggaaagtgtgagttatatattaattacttatcctcgcccaagatttggttgggttatttagcaaccattagagcaaaaatatgtgcctgctttaattttaagcattcaagttgttgcattacttaaggttacatttgctttattccaatagattccctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="70417" stop="71673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70717" g_stop="71373" g_length="657"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E375995" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70717" e_stop="71373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTG</genome_strand>
        <mrna_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAG-ACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376084" ref_strand="+" ref_description="SGN-E376084 [TUS-40-O8]">
      <seq>tttgctggtaacttgttatcatgcagactgggattagctttgatagcctaaactgagcccaagttgtagtgacttctggctttctgggactccaagacattgtctgcatgtcttgcatagtttgtaattactttttagaaattcagttgtcgtaagatggctgatggattttggtgcgaacaatggctttcccaaaggacagaaatgctgaaactttgaatgaaggctaagtgtctgcagtagaaaacttaattcatgtattgcgatgcatggaattgagtaagaagaatgaggacaatgttgtcaatcagatgaccatggacttctattttcatgaaatctgaacacactgaaacagagaaactataaaaagttaagtgaggaaagacggcacgtgagaactgaatcagggattttgatgaaagctagttttacttgatcaagaaaaaattaactggataaagataagaggctttctgaagaataataaaagcaggaaagtgtgagttatatattaattacttatcctcgcccaagatttggttgggttatttagcaaccattagagcaaaaatatgtgcctgctttaattttaagcattcaagttgttgcattactttaagttacatttgctttattccaatagattcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="70417" stop="71672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70717" g_stop="71372" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E376084" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70717" e_stop="71372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTT</genome_strand>
        <mrna_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAG-ACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTTAAGTTACATTTGCTTTATTCCAATAGATTCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376063" ref_strand="+" ref_description="SGN-E376063 [TUS-40-K12]">
      <seq>tttgctggtaacttgttatcatgcagactgggattagctttgatagcctaaactgagcccaagttgtagtgacttctggctttctgggactccaagacattgtctgcatgtcttgcatagtttgtaattactttttagaaattcagttgtcgtaagatggctgatggattttggtgcgaacaatggctttcccaaaggacagaaatgctgaaactttgaatgaaggctaagtgtctgcagtagaaaacttaattcatgtattgcgatgcatggaattgagtaagaagaatgaggacaatgttgtcaatcagatgaccatggacttctattttcatgaaatctgaacacactgaaacagagaaactataaaaagttaagtgaggaaagacggcacgtgagaactgaatcagggattttgatgaaagctagttttacttgatcaagaaaaaattaactggataaagataagaggctttctgaagaataataaaagcaggaaagtgtgagttatatattaattacttatcctcgcccaagatttggttgggttatttagcaaccattagagcaaaaatatgtgcctgctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="70417" stop="71607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70717" g_stop="71307" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E376063" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70717" e_stop="71307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAA</genome_strand>
        <mrna_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAG-ACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323438" ref_strand="+" ref_description="SGN-E323438 [cTOC-7-G6]">
      <seq>tttgctggtaacttgttatcatgcagactgggattagctttgatagcctaaactgagcccaagttgtagtgacttctggctttctgggactccaagacattgtctgcatgtcttgcatagtttgtaattactttttagaaattcagttgtcgtaagatggctgatggattttggtgcgaacaatggctttcccaaaggacagaaatgctgaaactttgaatgaaggctaagtgtctgcagtagaaaacttaattcatgtattgcgatgcatggaattgagtaagaagaatgaggacaatgttgtcaatcagatgaccatggacttctattttcatgaaatctgaacacactgaaacagagaaactataaaaagttaagtgaggaaagacggcacgtgagaactgaatcagggattttgatgaaagctagttttacttgatcaagaaaaaattaactggataaagataagaggctttctgaagaataataaaagcaggaaagtgtgagttatatattaattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="70417" stop="71541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70717" g_stop="71241" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E323438" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70717" e_stop="71241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTT</genome_strand>
        <mrna_strand>TTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAG-ACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375994" ref_strand="+" ref_description="SGN-E375994 [TUS-40-M12](-)">
      <seq>tttgctttatttcaatagattccctttgaactctgttttctcaaatattaagatgagacatcccttatttgcagcatctccatttgattaccaggcaacctattattttgtttatctaaatggtgcagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgtttgacatgagtctggtggagtctgcatttggcggagatgataaggctgattttgatgtcaataaatatgctgagaggatgagagaagatgatgaaaagttgtcttctttctggaagaaagacgataattctgcatcaaatgcacaacttactgtgacagctgatccctctttagagccaacaaattctgattctgattctgaagtcttagatgagaaagtagagaaaccttctcttgatgttgatgaagaagaatcatcaattgaagaaactttgcctggaagtaacagtacaaatgcgaatgtcaaagcagtgtagctaaaggcaatgtcttcaactttttagttttgtaaatgctcacaagatgggcaatttaaccatttctccaaatggttcagaactgaagtgtacttagcagagaacatattaatcaaggtgatgtaatgagtgatatgctataaaatgaatgttgtgcctctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="71046" stop="72350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71346" g_stop="72057" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E375994" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71346" e_stop="72057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTA</genome_strand>
        <mrna_strand>TTTGCTTTATTTCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376083" ref_strand="+" ref_description="SGN-E376083 [TUS-40-O8](-)">
      <seq>ttccctttgaactctgttttctcaaatattaagatgagacatcccttatttgcagcatctccatttgattaccaggcaacctattattttgtttatctaaatggtgcagctagcaaagccttttttggacccaaagactgcgagcaaagtccattttatgtactcagatgaccccaacagcaagaaaatgatggaagaaatgtttgacatgagtctggtggagtctgcatttggcggagatgataaggctgattttgatgtcaataaatatgctgagaggatgagagaagatgatgaaaagttgtcttctttctggaagaaagacgataattctgcatcaaatgcacaacttactgtgacagctgatccctctttagagccaacaaattctgattctgattctgaagtcttagatgagaaagtagagaaaccttctcttgatgttgatgaagaagaatcatcaattgaagaaactttgcctggaagtaacagtacaaatgcgaatgtcaaagcagtgtagctaaaggcaatgtcttcaactttttagttttgtaaatgctcacaagatgggcaatttaaccatttctccaaatggttcagaactgaagtgtacttagcagagaacatattaatcaaggtgatgtaatgagtgatatgctataaaatgaatgttgtgcctctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="71065" stop="72350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71365" g_stop="72057" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E376083" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71365" e_stop="72057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTA</genome_strand>
        <mrna_strand>TTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348044" ref_strand="+" ref_description="SGN-E348044 [cTOF-31-G18]">
      <seq>agagagagagagagaagatgatgaaaagttgtcttctttctggaagaaagacgataattctgcatcaaatgcacaacttactgtgacagctgatccctctttagagccaacaaattctgattctgattctgaagtcttagatgagaaagtagagaaaccttctcttgatgttgatgaagaagaatcatcaattgaagaaactttgcctggaagtaacagtacaaatgcgaatgtcaaagcagtgtagctaaaggcaatgtcttcaactttttagttttgtaaatgctcacaagatgggcaatttaaccatttctccaaatggttcagaactgaagtgtacttagcagagaacatattaatcaaggtgatgtaatgagtgatatgctataaaatgaatgttgtgcctcttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="71339" stop="72350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71638" g_stop="72059" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E348044" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71638" e_stop="72059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376062" ref_strand="+" ref_description="SGN-E376062 [TUS-40-K12](-)">
      <seq>ttgcatcaaaagcacaacttactgtgacagctgatccctctttagagccaacaaattctgattctgattctgaagtcttagatgagaaagtagagaaaccttctcttgatgttgatgaagaagaatcatcaattgaagaaactttgcctggaagtaacagtacaaatgcgaatgtcaaagcagtgtagctaaaggcaatgtcttcaactttttagttttgtaaatgctcacaagatgggcaatttaaccatttctccaaatggttcagaactgaagtgtacttagcagagaacatattaatcaaggtgatgtaatgagtgatatgctataaaatgaatgttgtgcctctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="71398" stop="72350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71697" g_stop="72057" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E376062" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71697" e_stop="72057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTA</genome_strand>
        <mrna_strand>TTGCATCAAAAGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690683" ref_strand="+" ref_description="SGN-E690683 [LH_Ea04C09]">
      <seq>ccggtctcgtgccgaattcggcacgaggcccaactgaggcaacagtctatgcttatacaaagaaattggctcagtacagacaaaagctagatgatatgtttgagtaacgtgacaaggggtttgctttcagttgaagtagatttgatatgcctcttgaagcctagtttctcttgcaaatgggagtgatttgatttttcgtttaatgtagtcttctcatagataggccaaacaaactcggccactttttcataaatgttgttctatatgtgttgatactgtgaattgtaatgtagaatattttttggttttgatcagtatgagtagacagattaaagagaatgagtctactagtgtttttgttcatctatacagcttataaataagacaatgtagaatatacacggggtttcttttctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="73637" stop="71983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73360" g_stop="73297" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72722" g_stop="72669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="116" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72584" g_stop="72283" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="418" r_length="302" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="429"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E690683" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73360" e_stop="73297"/>
          <exon e_start="72722" e_stop="72669"/>
          <exon e_start="72584" e_stop="72283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAGGTATGCAAATTCTCAAAGTTATGTTTGAAGTCGTTTTATCTTTGTCTAGATGTCACATTCTTGTTTGACAAACAGTTAGATGAAAGTGAAGCCTGAAAGAATCCTGTTGATCAACTGGTTAATTTGCTTTTAAGGGAATGACTAAGAGAAATAGCTTTTGAACATGCAAAGGTTATTATTAGGCATAACAGTTGGGTTACGGCACAAAGTTGAACATCATATAGTTGGTTAAACAAGTATGAAGCTGTGTAATCATATTGTTAAGAATCGGCATATTATGTTGCTGTACCTCTAACAAAGGCCAAACAGCGGTGCTTGCTTCTATACTTTGGAGTTTCATTTCATTTAAAGTTGTCTGAGTAAGAATCCTCAGGTTCTCACCTCTCCAACATTAACTGAGATATTCTTCAGTCAGGCATAGGGTACACAAGAAATAAGTCAAAAAAGGAACATAGTAAAATGCAAAGCATTTAGTGTTTACATTTGTCAAAGTCCTGCATTTTAGCATTTCGCCGATATAGCTAATTGATTATCTTTGTATGACCAAGTACTCCTTTCTTTTTCATAATAACAGAAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAGGTATGTCGATTTACTTCTTGTGTTCTATTCCTTGAAAACCACCTGCTATGATTCTTGAATCTAATTATCTCATGGTTTGTGCAGGGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGGGTTTCTTTTCTCA</genome_strand>
        <mrna_strand>CCGGTCTCGT-GCCGAATTCG-GCACGAGGCCCAACTGAGGCAACAGTCTATGCTTATACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG....................................................................................GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGCCTAGTTTCTCTTGCAAATGGGAGTGATTTGATTTTTCGTTTAATGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATGAGTAGACAGATTAAAGAGAATGAGTCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGACAATGTAGAATATACACGGGGTTTCTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694523" ref_strand="+" ref_description="SGN-E694523 [LH_Ea04C09](-)">
      <seq>cctcgtgccgaattcggcacgaggcccaactgaggcaacagtctatgcttatacaaagaaattggctcagtacagacaaaagctagatgatatgtttgagtaacgtgacaaggggtttgctttcagttgaagtagatttgatatgcctcttgaagcctagtttctcttgcaaatgggagtgatttgatttttcgtttaatgtagtcttctcatagataggccaaacaaactcggccactttttcataaatgttgttctatatgtgttgatactgtgaattgtaatgtagaatattttttggttttgatcagtatgagtagacagattaaagagaatgagtatggtagtgtttttgttcatctatccagcttataaattaaaaagggtagaatattcacggggtttcttttctcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="73637" stop="71983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73356" g_stop="73297" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574">
            <donor d_prob="1.000" d_score="0.82"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72722" g_stop="72669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="112" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72584" g_stop="72283" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="414" r_length="302" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="428"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E694523" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73356" e_stop="73297"/>
          <exon e_start="72722" e_stop="72669"/>
          <exon e_start="72584" e_stop="72283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAGGTATGCAAATTCTCAAAGTTATGTTTGAAGTCGTTTTATCTTTGTCTAGATGTCACATTCTTGTTTGACAAACAGTTAGATGAAAGTGAAGCCTGAAAGAATCCTGTTGATCAACTGGTTAATTTGCTTTTAAGGGAATGACTAAGAGAAATAGCTTTTGAACATGCAAAGGTTATTATTAGGCATAACAGTTGGGTTACGGCACAAAGTTGAACATCATATAGTTGGTTAAACAAGTATGAAGCTGTGTAATCATATTGTTAAGAATCGGCATATTATGTTGCTGTACCTCTAACAAAGGCCAAACAGCGGTGCTTGCTTCTATACTTTGGAGTTTCATTTCATTTAAAGTTGTCTGAGTAAGAATCCTCAGGTTCTCACCTCTCCAACATTAACTGAGATATTCTTCAGTCAGGCATAGGGTACACAAGAAATAAGTCAAAAAAGGAACATAGTAAAATGCAAAGCATTTAGTGTTTACATTTGTCAAAGTCCTGCATTTTAGCATTTCGCCGATATAGCTAATTGATTATCTTTGTATGACCAAGTACTCCTTTCTTTTTCATAATAACAGAAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAGGTATGTCGATTTACTTCTTGTGTTCTATTCCTTGAAAACCACCTGCTATGATTCTTGAATCTAATTATCTCATGGTTTGTGCAGGGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGGGTTTCTTTTCTCA</genome_strand>
        <mrna_strand>CCTCGT-GCCGAATTCG-GCACGAGGCCCAACTGAGGCAACAGTCTATGCTTATACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG....................................................................................GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGCCTAGTTTCTCTTGCAAATGGGAGTGATTTGATTTTTCGTTTAATGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATGAGTAGACAGATTAAAGAGAATGAGTATGGTAGTGTTTTTGTTCATCTATCCAGCTTATAAATTAAAAAGGGTAGAATATTCACGGGGTTTCTTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689539" ref_strand="+" ref_description="SGN-E689539 [LH_Ea01C17]">
      <seq>cattgtccatcattatgtatcttgacaagctaacatcccaagaggttataagtttggagcttgccactggaatccctatgctttacatattcaaagaaggaaggtttattcgcagaggaagtcctccagccccaactgaggcaacagtctatgcttatacaaagaaattggctcagtacagacaaaagctagatgatatgtttgagtaacgtgacaaggggtttgctttcagttgaagtagatttgatatgcctcttgaagcctagtttctcttgcaaatgggagtgatttgatttttcgtttaatgtagtcttctcatagataggccaaacaaactcggccactttttcataaatgttgttctatatgtgttgatactgtgaattgtaatgtagaatattttttggttttgatcagtatgagtagacagattaaagagaatgagtctactagtgtttttgttcatctatacagcttataaataagacaatgtagaatatacacggggtttcttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="73846" stop="71986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73550" g_stop="73507" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73506" i_stop="73417" i_length="90">
            <donor d_prob="0.923" d_score="0.91"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73416" g_stop="73297" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="164" r_length="120" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72722" g_stop="72669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="218" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72584" g_stop="72296" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="507" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="527"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E689539" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73550" e_stop="73507"/>
          <exon e_start="73416" e_stop="73297"/>
          <exon e_start="72722" e_stop="72669"/>
          <exon e_start="72584" e_stop="72296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAGGTGGAATTTCAAATTTGTTGGGATCTCTTGCATTTTTTTTTTTGTCTTTTCCTGTTAGGAAACATTACGAATTGAAACTCTTCTTATCAGGTTATAAGTTTGGAGCTTGCCACTGGAATCCCCATGCTTTACATATTCAAAGAAGGAAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAGGTATGCAAATTCTCAAAGTTATGTTTGAAGTCGTTTTATCTTTGTCTAGATGTCACATTCTTGTTTGACAAACAGTTAGATGAAAGTGAAGCCTGAAAGAATCCTGTTGATCAACTGGTTAATTTGCTTTTAAGGGAATGACTAAGAGAAATAGCTTTTGAACATGCAAAGGTTATTATTAGGCATAACAGTTGGGTTACGGCACAAAGTTGAACATCATATAGTTGGTTAAACAAGTATGAAGCTGTGTAATCATATTGTTAAGAATCGGCATATTATGTTGCTGTACCTCTAACAAAGGCCAAACAGCGGTGCTTGCTTCTATACTTTGGAGTTTCATTTCATTTAAAGTTGTCTGAGTAAGAATCCTCAGGTTCTCACCTCTCCAACATTAACTGAGATATTCTTCAGTCAGGCATAGGGTACACAAGAAATAAGTCAAAAAAGGAACATAGTAAAATGCAAAGCATTTAGTGTTTACATTTGTCAAAGTCCTGCATTTTAGCATTTCGCCGATATAGCTAATTGATTATCTTTGTATGACCAAGTACTCCTTTCTTTTTCATAATAACAGAAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAGGTATGTCGATTTACTTCTTGTGTTCTATTCCTTGAAAACCACCTGCTATGATTCTTGAATCTAATTATCTCATGGTTTGTGCAGGGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGG</genome_strand>
        <mrna_strand>CATTGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAG..........................................................................................GTTATAAGTTTGGAGCTTGCCACTGGAATCCCTATGCTTTACATATTCAAAGAAGGAAGGTTTATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG....................................................................................GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGCCTAGTTTCTCTTGCAAATGGGAGTGATTTGATTTTTCGTTTAATGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATGAGTAGACAGATTAAAGAGAATGAGTCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGACAATGTAGAATATACACGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239524" ref_strand="+" ref_description="SGN-E239524 [cLED-23-P4]">
      <seq>ggcgtcgtagctatgatattcctcctccgaacggagaaagtttggaaatgtgtgcagagagagctgttgcctacttcacagagcacattgaaccccaactggcaagtggaaaaaatataatgattgcagcccatgggaactcattgaggtccatcattatgtatcttgacaagctaacatcccaagaggttataagtttggagcttgccactggaatccccatgctttacatattcaaagaaggaaggtatattcgcagaggaagtcctccagccccaactgaggcaacagtctatgcttatacaaagaaattggctcagtacagacaaaagctagatgatatgtttgagtaacgtgacaaggggtttgctttcagttgaagtagatttgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="74079" stop="72252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73779" g_stop="73694" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73693" i_stop="73609" i_length="85">
            <donor d_prob="0.644" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73608" g_stop="73507" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="188" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73506" i_stop="73417" i_length="90">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73416" g_stop="73297" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="308" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72722" g_stop="72669" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="362" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72584" g_stop="72552" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="395" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E239524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73779" e_stop="73694"/>
          <exon e_start="73608" e_stop="73507"/>
          <exon e_start="73416" e_stop="73297"/>
          <exon e_start="72722" e_stop="72669"/>
          <exon e_start="72584" e_stop="72552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTCGTAGCTATGATATTCCTCCTCCGAACGGAGAAAGTTTGGAAATGTGTGCAGAGAGAGCTGTTGCCTACTTCACAGAGCACGTAGGCTGAAGCATATTTCAGATCCATCATATTATCAATCCAGTTTTAGGTTTTATGAAATGACATTTTTGCTGTAATGTTGCAGATTGAACCCCAACTGGCAAGTGGAAAAAATATAATGATTGCAGCCCATGGGAACTCATTGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAGGTGGAATTTCAAATTTGTTGGGATCTCTTGCATTTTTTTTTTTGTCTTTTCCTGTTAGGAAACATTACGAATTGAAACTCTTCTTATCAGGTTATAAGTTTGGAGCTTGCCACTGGAATCCCCATGCTTTACATATTCAAAGAAGGAAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAGGTATGCAAATTCTCAAAGTTATGTTTGAAGTCGTTTTATCTTTGTCTAGATGTCACATTCTTGTTTGACAAACAGTTAGATGAAAGTGAAGCCTGAAAGAATCCTGTTGATCAACTGGTTAATTTGCTTTTAAGGGAATGACTAAGAGAAATAGCTTTTGAACATGCAAAGGTTATTATTAGGCATAACAGTTGGGTTACGGCACAAAGTTGAACATCATATAGTTGGTTAAACAAGTATGAAGCTGTGTAATCATATTGTTAAGAATCGGCATATTATGTTGCTGTACCTCTAACAAAGGCCAAACAGCGGTGCTTGCTTCTATACTTTGGAGTTTCATTTCATTTAAAGTTGTCTGAGTAAGAATCCTCAGGTTCTCACCTCTCCAACATTAACTGAGATATTCTTCAGTCAGGCATAGGGTACACAAGAAATAAGTCAAAAAAGGAACATAGTAAAATGCAAAGCATTTAGTGTTTACATTTGTCAAAGTCCTGCATTTTAGCATTTCGCCGATATAGCTAATTGATTATCTTTGTATGACCAAGTACTCCTTTCTTTTTCATAATAACAGAAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAGGTATGTCGATTTACTTCTTGTGTTCTATTCCTTGAAAACCACCTGCTATGATTCTTGAATCTAATTATCTCATGGTTTGTGCAGGGGTTTGCTTTCAGTTGAAGTAGATTTGATATG</genome_strand>
        <mrna_strand>GGCGTCGTAGCTATGATATTCCTCCTCCGAACGGAGAAAGTTTGGAAATGTGTGCAGAGAGAGCTGTTGCCTACTTCACAGAGCAC.....................................................................................ATTGAACCCCAACTGGCAAGTGGAAAAAATATAATGATTGCAGCCCATGGGAACTCATTGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAG..........................................................................................GTTATAAGTTTGGAGCTTGCCACTGGAATCCCCATGCTTTACATATTCAAAGAAGGAAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG....................................................................................GGGTTTGCTTTCAGTTGAAGTAGATTTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622782" ref_strand="+" ref_description="SGN-E622782 [73153]">
      <seq>ttctggtgttgatcttaactgggttttctttttcttggttataatggctgcaacgaccctttaccaatcggttgggactcttcagtcttgtagaaataatgtcaactcaggattgtgtcctgattatgggcatgtttcctttagatcggtgtccaagggtttcaaagttgatgtgggattgttgagaggaggaagtttttgtcctagaaagagaagtagttgtgtaattcaagcctctgcttctcaggctacggtgtttgatgaagcttcagcaccatcaagtgccaccaccagtgactccaacaagaaaacaagtgaagctgctttgatcctgatcagacatggcgagtctatgtggaacgaaaaaaacttgttcactggttgtgtagatgtgcctttgactactaagggtgtggaagaggccgttgaagctgggaaacgaattagtaatatacctgtcgacatgatctatacttctgctttgattcgtgctcaaatgactgccatgcttgccatgactcagcaccgccgcaagaaggtgccaactatcattcatgaagagagtgaacaagcaggagcttggagtcagatctttagtgaagctaccaacatgcaatgtataccagttgtaacagcttggcaactaaatgagagaatgtatggggaattacaaggtcttaataagcaggaaacaggtgataaatatggaagtgagcaggttcatgagtggcgtcgttagctatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="75838" stop="73462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75538" g_stop="75497" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75496" i_stop="75024" i_length="473">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74752" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="314" r_length="272" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.389" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74542" g_stop="74319" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="538" r_length="224" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74318" i_stop="74059" i_length="260">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74058" g_stop="73940" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="657" r_length="119" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73939" i_stop="73851" i_length="89">
            <donor d_prob="0.881" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73850" g_stop="73762" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="747" r_length="90" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E622782" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75538" e_stop="75497"/>
          <exon e_start="75023" e_stop="74752"/>
          <exon e_start="74542" e_stop="74319"/>
          <exon e_start="74058" e_stop="73940"/>
          <exon e_start="73850" e_stop="73762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAAGTATGATAGTCTATCTCTTGAACTGTTATTTCCAAATCATCATAAGCACATCATAAGATAAGAAGAATTTGTGATCATTTCTTTCATTATCACGTTAAGAAGTAATTGTTCCCCTTCCTATAAATGATTTTCGTGGGATAAATTATATGATTGTTTTAAGCTACTCTGCAGCACTGCATCTGATTCCCATCTTCCTTATTTCCCTTTAGGTGAAGCTGCTTTGATCCTGATTAGACACGGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAGGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGATTCGTGCTCAAATGACTGCCATGCTTGCCATGACTCAGCACCGCCGCAAGAAGGTAATTTCTTGGTTAAAGCTTGTAACATTTGGACTTCTCTTACTTCCATTTCACAAGGGTAAGATGTTTTTGGGGGTAACTGTATCATAATAGATAGAAATAATATGGTTTGATTAGAAGCCTAAAGCGTTTGCCTACACATGCTTTCAAACTGCAGTAGACTCCTTTCATTTTGGTTTATCCTTCTGCTCTGAAGTGTTTTAGGCTTCTATATTGGTAGCCTAAAATATTTATCATTGCCACTTTCATGTCAATTTTAGGTGCCAACTATCATTCATGAAGAGAGTGAACAAGCAGGAGCTTGGAGTCAGATCTTTAGTGAAGATACCAGCATGCAATGTATACCAGTTGTAACTGCTTGGCAACTAAATGAGAGAATGTAAAAACATCTTCTCCTTCCGAGGTTATTTTTCCTATAGCCTTATATATCAGTTGATGGTTCTGATGTATGACTTTGCTATTTTGTAGGTATGGGGAATTACAAGGTCTTAATAAGCAGGAAACAGCTGATAAATATGGAAGTGAGCAGGTTCATGAGTGGCGTCG-TAGCTATGATA</genome_strand>
        <mrna_strand>TTCTGGTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACCCTTTACCAATCGGTTGGGACTCTTCAGTCTTGTAGAAATAATGTCAACTCAGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGATCGGTGTCCAAGGGTTTCAAAGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTCCTAGAAAGAGAAGTAGTTGTGTAATTCAAGCCTCTGCTTCTCAGGCTACGGTGTTTGATGAAGCTTCAGCACCATCAAGTGCCACCACCAGTGACTCCAACAAGAAAACAA.................................................................................................................................................................................................................GTGAAGCTGCTTTGATCCTGATCAGACATGGCGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTACTAAGGGTGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGATTCGTGCTCAAATGACTGCCATGCTTGCCATGACTCAGCACCGCCGCAAGAAG....................................................................................................................................................................................................................................................................GTGCCAACTATCATTCATGAAGAGAGTGAACAAGCAGGAGCTTGGAGTCAGATCTTTAGTGAAGCTACCAACATGCAATGTATACCAGTTGTAACAGCTTGGCAACTAAATGAGAGAAT.........................................................................................GTATGGGGAATTACAAGGTCTTAATAAGCAGGAAACAGGTGATAAATATGGAAGTGAGCAGGTTCATGAGTGGCGTCGTTAGCTATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687670" ref_strand="+" ref_description="SGN-E687670 [T3_tus_79_F19]">
      <seq>ctttcttggagaaatttttttcaagaaaacgatttctactaagcatcccatcatttccccctcttaatcttgatttgtcagacacattttaccctataaagactcaatctttataccatttgatgcatgtaatgtgccatcttcttctccgccaacttttcttgatataaactcaacaccctttttcgttttcccccatttaaccgcaccaaaagaaaaagggggaaaaacaagatttttcttggatagcatcgttcccatttttcttgctttggtttcttcgccaacttgcaagcatcgtttggctgtataaataagcaatggctgcaacgacacttaaccaatcggttggaactcttcggtcttgtagagtaaatggtaactctggattgtgtcctgattatgggcatgtttcctttagaccggtgtccaagggtttcaaggttgatgtgggattgttgagaggaggaagtttttgttctagaaagacaagtacttgtgtaattcaagcctctgcttctcaagctacggtgttcgatgaagcttcagcaccatctagtgccaccaccagtgactccaacaagaaaacaagtgaagctgctttgatcctgattagacaccgtgagtctatgtggaacgaaaaaaacttgttcactggttgtgtagatgtgcctttgactaataaaggcgtggaagaggccgttgaagctgggaaacgaattaataatatacctgtccaactgatctatacttctgctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="76194" stop="74071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75894" g_stop="75576" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74752" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="591" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.389" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74542" g_stop="74371" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="763" r_length="172" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E687670" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75894" e_stop="75576"/>
          <exon e_start="75023" e_stop="74752"/>
          <exon e_start="74542" e_stop="74371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGCGTATGATCTCTGATTACTTCTCTCTATATTCTGCATTTTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAAGTATGATAGTCTATCTCTTGAACTGTTATTTCCAAATCATCATAAGCACATCATAAGATAAGAAGAATTTGTGATCATTTCTTTCATTATCACGTTAAGAAGTAATTGTTCCCCTTCCTATAAATGATTTTCGTGGGATAAATTATATGATTGTTTTAAGCTACTCTGCAGCACTGCATCTGATTCCCATCTTCCTTATTTCCCTTTAGGTGAAGCTGCTTTGATCCTGATTAGACACGGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAGGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGAT</genome_strand>
        <mrna_strand>CTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAA.................................................................................................................................................................................................................GTGAAGCTGCTTTGATCCTGATTAGACACCGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAAGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAATAATATACCTGTCCAACTGATCTATACTTCTGCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256574" ref_strand="+" ref_description="SGN-E256574 [cLEG-38-O12]">
      <seq>tcttggagaaatttttttcaagaaaacgatttctactaagcatcccatcatttccccctcttaatcttgatttgtcagacacattttaccctataaagactcaatctttataccatttgatgcatgtaatgtgccatcttcttctccgccaacttttcttgatataaactcaacaccctttttcgttttcccccatttaaccgcaccaaaagaaaaagggggaaaaacaagatttttcttggatagcatcgttcccatttttcttgctttggtttcttcgccaacttgcaagcatcgtttggctgtataaataagcaatggctgcaacgacacttaaccaatcggttggaactcttcggtcttgtagagtaaatggtaactctggattgtgtcctgattatgggcatgtttcctttagaccggtgtccaagggtttcaaggttgatgtgggattgttgagaggaggaagtttttgttctagaaagacaagtacttgtgtaattcaagcctctgcttctcaagctacggtgttcgatgaagcttcagcaccatctagtgccaccaccagtgactccaacaagaaaacaagtgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="76191" stop="74445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75891" g_stop="75576" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74752" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="588" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.389" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74542" g_stop="74534" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="597" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E256574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75891" e_stop="75576"/>
          <exon e_start="75023" e_stop="74752"/>
          <exon e_start="74542" e_stop="74534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGCGTATGATCTCTGATTACTTCTCTCTATATTCTGCATTTTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAAGTATGATAGTCTATCTCTTGAACTGTTATTTCCAAATCATCATAAGCACATCATAAGATAAGAAGAATTTGTGATCATTTCTTTCATTATCACGTTAAGAAGTAATTGTTCCCCTTCCTATAAATGATTTTCGTGGGATAAATTATATGATTGTTTTAAGCTACTCTGCAGCACTGCATCTGATTCCCATCTTCCTTATTTCCCTTTAGGTGAAGCTG</genome_strand>
        <mrna_strand>TCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAA.................................................................................................................................................................................................................GTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256451" ref_strand="+" ref_description="SGN-E256451 [cLEG-38-O22]">
      <seq>tcttggagaaatttttttcaagaaaacgatttctactaagcatgccatcatttccccctcttaatcttgatttgtcagacacattttaccctataaagactcaatctttataccatttgatgcatgtaatgtgccatcttcttctccgccaacttttcttgatataaactcaacaccctttttcgttttcccccatttaaccgcaccaaaagaaaaagggggaaaaacaagatttttcttggatagcatcgttcccatttttcttgctttggtttcttcgccaacttgcaagcatcgtttggctgtataaataagcaatggctgcaacgacacttaaccaatcggttggaactcttcggtcttgtagagtaaatggtaactctggattgtgtcctgattatgggcatgtttcctttagaccggtgtccaagggtttcaaggttgatgtgggattgttgagaggaggaagtttttgttctagaaagacaagtacttgtgtaattcaagcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="76191" stop="74529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75891" g_stop="75576" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74829" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="511" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E256451" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75891" e_stop="75576"/>
          <exon e_start="75023" e_stop="74829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGCGTATGATCTCTGATTACTTCTCTCTATATTCTGCATTTTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTC</genome_strand>
        <mrna_strand>TCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATGCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331043" ref_strand="+" ref_description="SGN-E331043 [cTOD-6-M19]">
      <seq>atatacacactttcttggagaaatttttttcaagaaaacgatttctactaagcatcccatcatttccccctcttaatcttgatttgtcagacacattttaccctataaagactcaatctttataccatttgatgcatgtaatgtgccatcttcttctccgccaacttttcttgatataaactcaacaccctttttcgttttcccccatttaaccgcaccaaaagaaaaagggggaaaaacaagatttttcttggatagcatcgttcccatttttcttgctttggtttcttcgccaacttgcaagcatcgtttggctgtataaataagcaatggctgcaacgacacttaaccaatcggttggaactcttcggtcttgtagagtaaatggtaactctggattgtgtcctgattatgggcatgtttcctttagaccggtgtccaagggtttcaaggttgatgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="76203" stop="74588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75903" g_stop="75576" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74888" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="464" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E331043" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75903" e_stop="75576"/>
          <exon e_start="75023" e_stop="74888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACACACTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGCGTATGATCTCTGATTACTTCTCTCTATATTCTGCATTTTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGA</genome_strand>
        <mrna_strand>ATATACACACTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323140" ref_strand="+" ref_description="SGN-E323140 [cTOB-28-P5]">
      <seq>tttcttggagaaatttttttcaagaaaacgatttctactaagcatcccatcatttccccctcttaatcttgatttgtcagacacattttaccctataaagactcaatctttataccatttgatgcatgtaatgtgccatcttcttctccgccaacttttcttgatataaactcaacaccctttttcgttttcccccatttaaccgcaccaaaagaaaaagggggaaaaacaagatttttcttggatagcatcgttcccatttttcttgctttggtttcttcgccaacttgcaagcatcgtttggctgtataaataagcaatggctgcaacgacacttaaccaatcggttggaactcttcggtcttgtagagtaaatggtaactctggattgtgtcctgattatgggcatgtttcctttagaccggtgtccaagggtttcaaggttgatgtggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="76193" stop="74588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75893" g_stop="75576" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75023" g_stop="74888" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="454" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E323140" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75893" e_stop="75576"/>
          <exon e_start="75023" e_stop="74888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGCGTATGATCTCTGATTACTTCTCTCTATATTCTGCATTTTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTATGTGAGCTCTGTTTTCATTTCGATATGTTCGATGCTAATGGATTGATTTGTGATTTTTACGATTTCTGCTTTTTTTTTTCTTCTGTTGATGTAATGTGTGTATGATTTGATATGGGCTAACCCCACTTTGTTTAATCGATGTCATATCTTGTTACTCGTTAGTCAGTAGGTTTTGTAGTTCTTAATCTTGAATTAGATCTATCTTGATTGCTAATTAATTTTATTGGATTGATGTGATTTTGCTCAATGCTTTTCCTTTTGTCATTTTTTGTGTTTATAGCACATTCATTTTCATCCTTGATGTAGAAATTGTTCCTACGAAGGAGGGTAACATTTTGTGTTGAACTCAAGAATTAGTTCCTCTGTTTCTCTGAGTAACTGTGTTGCACTTTGTTCCATCTTAACAAGTTGAAATGCTGCTGTTTTTGATTTGCATGTACTTTTCATTGACAATGTTGGTTTCTCTGATCTCAGAATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGA</genome_strand>
        <mrna_strand>TTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734430" ref_strand="-" ref_description="SGN-E734430 [LB12CF03]">
      <seq>tttttttttttttttttttagtactagtagaagtaattaaaatggctgcatacaaattattaactgaaaccttgcaaaactcagcccagaatttctttttgtagagagagaaatatatttatatcatcatcatcatcattcatcatgcagatcttactcttaacaacatgtatatacatatacatattatatagcagctttgatatgcatttttttggtgtgtgtgtgggtaacgtactgattaaccacatcacgtttgattcatgatccatacatggcgtctactaaaaatttccactacctaaacggcggcgacagtctcgcttgtggcggaaacgtcagatcccttcccgccggctacggcggcagcgacggagttcttcatgtagtcctttctagatgcaaccaacgaacacttgtccttcttctcatctagattcatctgctgctgtctacactctagactgcaaaaagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="63281" stop="91917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90552" g_stop="90568" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90569" i_stop="91157" i_length="589">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91158" g_stop="91617" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="477" r_length="460" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E734430" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734430" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90552" e_stop="90568"/>
          <exon e_start="91158" e_stop="91617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTGATTTGTTTATATATCCTTCATTTACTTTTTAATTTAATTATACATAAAAGAAGAAAATGTTCTAGCTCGCTCAATTATTGATAAGACTAATTTTTCTCACCCTCAATTTCAACAAATCAATTACGTATAAGCAAATTTTATTTTTTTCTCATAGAAATAGAGAGATTTGTTTATTTCTAATAACTCACTGGAAAGGAAGAATATAAATAACAAGAAATTAAATAAGAAAAAGGACCTTGTAATACATTTTAATTATAATAATAAGGCTAAGAAATGACAATAATAAGGGTAATACCATTTTTATATTCCCAACTGGCTTTACTTTAGATGGGGTTCTCATTGCTGGCCTGCCCCAATCACAGGGACAACAGGTATCACACCACTCACCAGGGAATCTCATAGTAACTAAAACCACATGACCAAAATTATTTCTTATTTTTTTCTTCGAAATCACAATTTTAATATAATTCCATAAATAAATTATCCGATAGATCTTCAACTCAATAAAAAAGGTACTCAACTCAAAAATAATCTGGGTTCTTCAAAAAAAACCTGCAATTTCTTTTTGAGATTTTATACTAATAAAAACAATTGAATACATAGTACTAGTAGAAGTAATTAAAATGGCTGCATACAAATTATTAACTGAAACCTTGCAAAACTCAGCCCAGAATTTCTTTTTGTAGAGAGAGAAATATATTTATATCATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGCTTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATTTCCACTACCTAAACGGCGGCGACAGTCTCGCTTGTGGCGGAAACGTCAGATCCCTTCCCGCCGGCTACGGCGGCAGCGACGGAGTTCTTCATGTAGTCCTTTCTAGATGCAACCAACGAACACTTGTCCTTCTTCTCATCTAGATTCATCTGCTGCTGTCTACACTCTAGACTGCAAAAAGCAC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTACTAGTAGAAGTAATTAAAATGGCTGCATACAAATTATTAACTGAAACCTTGCAAAACTCAGCCCAGAATTTCTTTTTGTAGAGAGAGAAATATATTTATATCATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGCTTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATTTCCACTACCTAAACGGCGGCGACAGTCTCGCTTGTGGCGGAAACGTCAGATCCCTTCCCGCCGGCTACGGCGGCAGCGACGGAGTTCTTCATGTAGTCCTTTCTAGATGCAACCAACGAACACTTGTCCTTCTTCTCATCTAGATTCATCTGCTGCTGTCTACACTCTAGACTGCAAAAAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372748" ref_strand="-" ref_description="SGN-E372748 [TUS-32-H10]">
      <seq>tttagatctcaatttcaataatcctgcccctaattcttctcttagtaaatacaataatccattcgatcctcccaatcctttttcacctgccaacacccagcagcaacacctagatcaacaacgtttattgccagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgatgattttttagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtttagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctataaaggactacatgaaaaactccgtcgctgccgccgtagccggcgggaagggatttgacgtttccgcctcaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcattaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgtttagagtaagatttgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92274" stop="63281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91974" g_stop="91714" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="650" r_length="389" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91232" i_stop="91001" i_length="232">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91000" g_stop="90982" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="669" r_length="19" r_score="0.737"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E372748" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372748" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91974" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
          <exon e_start="91000" e_stop="90982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAGATCTATCGGATAATTTATTTATGGAATTATATTAAAATTGTGATTTCGAAGAAAAAAATAAGAAATAATT</genome_strand>
        <mrna_strand>TTTAGATCTCAATTTCAATAATCCTGCCCCTAATTCTTCTCTTAGTAAATACAATAATCCATTCGATCCTCCCAATCCTTTTTCACCTGCCAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGCCAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGATGATTTTTTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTTTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTATAAAGGACTACATGAAAAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATTTGACGTTTCCGCCTCAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATTAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTTAGAGTAAGATTTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAA-AA........................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706483" ref_strand="+" ref_description="SGN-E706483 [FA30AD04]">
      <seq>tgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttttttgaggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92370" stop="90796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92070" g_stop="91714" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91096" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="887" r_length="530" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91095" i_stop="91001" i_length="95">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91000" g_stop="90987" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="888" r_stop="901" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E706483" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92070" e_stop="91714"/>
          <exon e_start="91625" e_stop="91096"/>
          <exon e_start="91000" e_stop="90987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAGATCTATCGGATAATTTATTTATGGAATTATATTAAAATTGTGATTTCGAAGAAAAAAATAAGAAA</genome_strand>
        <mrna_strand>TGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAGGAA...............................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732563" ref_strand="+" ref_description="SGN-E732563 [LB02CA12]">
      <seq>cagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92121" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91821" g_stop="91714" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="501" r_length="393" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91232" i_stop="91001" i_length="232">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91000" g_stop="90987" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="515" r_length="14" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E732563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91821" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
          <exon e_start="91000" e_stop="90987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAGATCTATCGGATAATTTATTTATGGAATTATATTAAAATTGTGATTTCGAAGAAAAAAATAAGAAA</genome_strand>
        <mrna_strand>CAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA........................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735120" ref_strand="+" ref_description="SGN-E735120 [LB14CA03]">
      <seq>tgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92357" stop="63281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="737" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91232" i_stop="91001" i_length="232">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91000" g_stop="90991" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="747" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E735120" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
          <exon e_start="91000" e_stop="90991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAGATCTATCGGATAATTTATTTATGGAATTATATTAAAATTGTGATTTCGAAGAAAAAAATAA</genome_strand>
        <mrna_strand>TGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAAAA........................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228970" ref_strand="+" ref_description="SGN-E228970 [cLEL-29-I10](-)">
      <seq>aatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatatcaatatatttctctctctacaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91944" stop="63281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91743" g_stop="91714" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="420" r_length="390" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91232" i_stop="91001" i_length="232">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91000" g_stop="90991" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="430" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E228970" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91743" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
          <exon e_start="91000" e_stop="90991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAGATCTATCGGATAATTTATTTATGGAATTATATTAAAATTGTGATTTCGAAGAAAAAAATAA</genome_strand>
        <mrna_strand>AATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATCAATATATTTCTCTCTCTACAAAAAAAA........................................................................................................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288354" ref_strand="+" ref_description="SGN-E288354 [cLES-16-E7]">
      <seq>gagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91923" stop="90850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91623" g_stop="91151" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91150" i_stop="91001" i_length="150">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91000" g_stop="90991" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="483" r_length="10" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E288354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91623" e_stop="91151"/>
          <exon e_start="91000" e_stop="90991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAGATCTATCGGATAATTTATTTATGGAATTATATTAAAATTGTGATTTCGAAGAAAAAAATAA</genome_strand>
        <mrna_strand>GAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCA......................................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229895" ref_strand="+" ref_description="SGN-E229895 [cLEL-33-I7](-)">
      <seq>acaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttaaccacacacacacccaaaaaaatgcatatcaaagctgctatataatatgtatgtgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttttttgaagaacccagattatttttgagttgagtacctttttattgagttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91768" stop="90752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91468" g_stop="91052" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E229895" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91468" e_stop="91052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACA-CCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAG</genome_strand>
        <mrna_strand>ACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTAACCACACACACACCCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATGTGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACC-TTTTTATTGAGTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282942" ref_strand="+" ref_description="SGN-E282942 [cLER-17-K11]">
      <seq>ttttttcaaaaataatctgggttcttcaaaaaaaacctgcaatttctttttgagattttatactaataaaaacaattgaatacatagtactagtagaagtaattaaaatggctgcatacaaattattaactgaaaccttgcaaaactcagcccagaatttctttttgtagagagagaaatatatttatatcatcatcatcattcatcatgcagatcttactcttaacaacatgtatatacatatacatattatatagcagctttgatatgcatttttttggtgtgtgtgtgggtaacgtactgattaaccacatcacgtttgattcatgatccatacatggcgtctactaaaaatttccactacctaaacggcggcgacagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="90780" stop="91760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91075" g_stop="91460" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-E282942" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91075" e_stop="91460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCAAAAATAATCTGGGTTCTTCAAAAAAAACCTGCAATTTCTTTTTGAGATTTTATACTAATAAAAACAATTGAATACATAGTACTAGTAGAAGTAATTAAAATGGCTGCATACAAATTATTAACTGAAACCTTGCAAAACTCAGCCCAGAATTTCTTTTTGTAGAGAGAGAAATATATTTATATCATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGCTTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATTTCCACTACCTAAACGGCGGCGACAGTC</genome_strand>
        <mrna_strand>TTTTTTCAAAAATAATCTGGGTTCTTCAAAAAAAACCTGCAATTTCTTTTTGAGATTTTATACTAATAAAAACAATTGAATACATAGTACTAGTAGAAGTAATTAAAATGGCTGCATACAAATTATTAACTGAAACCTTGCAAAACTCAGCCCAGAATTTCTTTTTGTAGAGAGAGAAATATA-TT-TAT-ATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGCTTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATTTCCACTACCTAAACGGCGGCGACAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733808" ref_strand="+" ref_description="SGN-E733808 [LB11AA05]">
      <seq>gtatatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttttttgaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92356" stop="90796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="91714" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91085" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="884" r_length="541" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E733808" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="91714"/>
          <exon e_start="91625" e_stop="91085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATT</genome_strand>
        <mrna_strand>GTATATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733809" ref_strand="+" ref_description="SGN-E733809 [LB11AA06]">
      <seq>gtatatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattggcagttttttttgaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92356" stop="90796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="91714" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91086" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="883" r_length="540" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E733809" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="91714"/>
          <exon e_start="91625" e_stop="91086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTAT</genome_strand>
        <mrna_strand>GTATATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGGCAGTTTTTTTTGAAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713958" ref_strand="+" ref_description="SGN-E713958 [FB10AE08]">
      <seq>ctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttttttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92358" stop="90796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92058" g_stop="91714" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91088" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="883" r_length="538" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E713958" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92058" e_stop="91714"/>
          <exon e_start="91625" e_stop="91088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATT</genome_strand>
        <mrna_strand>CTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734335" ref_strand="+" ref_description="SGN-E734335 [LB12BF03]">
      <seq>cgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92366" stop="90796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92066" g_stop="91714" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91090" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="889" r_length="536" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E734335" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92066" e_stop="91714"/>
          <exon e_start="91625" e_stop="91090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGA</genome_strand>
        <mrna_strand>CGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722780" ref_strand="+" ref_description="SGN-E722780 [FC18BC05]">
      <seq>actcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttattacttctactagtactatgtattcaattgtttttattagaataaaatctcaaaaagaaattgcaggtttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92392" stop="90802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92092" g_stop="91714" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91102" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="903" r_length="524" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E722780" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92092" e_stop="91714"/>
          <exon e_start="91625" e_stop="91102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTAC-AAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTT</genome_strand>
        <mrna_strand>ACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTT-ATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGAATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713092" ref_strand="+" ref_description="SGN-E713092 [FB06CG10]">
      <seq>gttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatctcaaaaagaaattgcaggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92369" stop="90805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92069" g_stop="91714" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91105" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="877" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E713092" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92069" e_stop="91714"/>
          <exon e_start="91625" e_stop="91105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTT</genome_strand>
        <mrna_strand>GTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731316" ref_strand="+" ref_description="SGN-E731316 [LA26DA12]">
      <seq>cgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgncaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtattcaattgtttttattagtataaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92356" stop="90828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91128" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="842" r_length="498" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E731316" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATC</genome_strand>
        <mrna_strand>CGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGNCAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607425" ref_strand="+" ref_description="SGN-E607425 [23390]">
      <seq>caacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcactgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtaggcgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtatatacatgttgttagagtaagatctgcatgatgtgatgattatataaatatatttctctctctacaaaaaaatttctaggctgagttttgcaaggtatcatttaataatttgtatgcagccattttaattactactactagtattatgtatgcaattgctttattagtagaaaattgcaggttttaaaaaagacaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92159" stop="90825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91859" g_stop="91714" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91131" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="617" r_length="471" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E607425" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E607425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91859" e_stop="91714"/>
          <exon e_start="91625" e_stop="91131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAA</genome_strand>
        <mrna_strand>CAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCACT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTACCCACACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACATGTTGTT-AGAGTAAGATCTGC---ATG-ATG-TGATGAT--T-ATATAAATATATTTCTCTCTCTACAAAAA-AATTTCTAGGCTGAGTTTTGCAAGGTATCATTTAATAATTTGTATGCAGCCATTTTAATTACTACTACTAGTATTATGTATGCAATTG-CTTTATTAGTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586267" ref_strand="+" ref_description="SGN-E586267 [60320]">
      <seq>ctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtaggcgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtatatacatgttgttagagtaagatctgcatgatgtgatgattatataaatatatttctctctctacaaaaaaaattctaggctgagttttgcaacgtttcagttcataatttgtatgcagccattttaattactactactagtattatgtatgcaattgctttattagtagaaaattgcaggttttagaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91782" stop="90825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91482" g_stop="91131" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="353" polyA_stop="362"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E586267" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91482" e_stop="91131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAA</genome_strand>
        <mrna_strand>CTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTA-CC-CACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACATGTTGTT-AGAGTAAGATCTGC---ATG-ATG-TGATGAT--T-ATATAAATATATTTCTCTCTCTACAAAAA-AAATTCTAGGCTGAGTTTTGCAACGTTTCAGTTCATAATTTGTATGCAGCCATTTTAATTACTACTACTAGTATTATGTATGCAATTG-CTTTATTAGTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612981" ref_strand="+" ref_description="SGN-E612981 [62750]">
      <seq>agatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcgctgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggagatttttagtaggcgccgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtatatacatgttgttagagtaagatctgcatgatgtgatgattattatataaatatatttctctctctacaaaaaaatttctaggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattactactactagtattatgtatgcaattgctttattagtcaaaaaaattgcaggttttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91922" stop="90825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91622" g_stop="91136" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E612981" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91622" e_stop="91136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTA---GACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGT</genome_strand>
        <mrna_strand>AGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCGCTGCCGCC---G--GG----AAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAGATTTTTAGTAGGCGCCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTA-CC-CACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACATGTTGTT-AGAGTAAGATCTGCATGATG--TGATGAT--T-ATTATATAAATATATTTCTCTCTCTACAAAAA-AATTTCTAGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTACTACTAGTATTATGTATGCAATTG-CTTTATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728350" ref_strand="+" ref_description="SGN-E728350 [LA17CB10]">
      <seq>acaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcanagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagttaataatttgtatgcagccattttaattacttctactagtactatgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92341" stop="90853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92041" g_stop="91714" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91153" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="801" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E728350" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92041" e_stop="91714"/>
          <exon e_start="91625" e_stop="91153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATT</genome_strand>
        <mrna_strand>ACAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCANAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711159" ref_strand="+" ref_description="SGN-E711159 [FB01AG01]">
      <seq>cctttctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaattctgggctgagttttgcaaggtttcagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92364" stop="90901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92065" g_stop="91714" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91201" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="777" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E711159" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92065" e_stop="91714"/>
          <exon e_start="91625" e_stop="91201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTA</genome_strand>
        <mrna_strand>CCTTTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322689" ref_strand="+" ref_description="SGN-E322689 [cTOB-26-H15]">
      <seq>aatcgaagaagaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtgggtaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatggatatgtatatacatgttgttaangaagtagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaagaatttctgggctgagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92353" stop="90915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92053" g_stop="91714" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91215" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="747" r_length="408" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E322689" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92053" e_stop="91714"/>
          <exon e_start="91625" e_stop="91215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAA-GAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTG</genome_strand>
        <mrna_strand>AATCGAAGAAGAAAAAA-TGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGGTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGGATATGTATATACATGTTGTTAANGAAGTAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTAC-AAAAGAATTTCTGGGCTGAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402206" ref_strand="+" ref_description="SGN-E402206 [PPC-7-E19]">
      <seq>aaaatgttgctggggaagaggactcggccacccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcttactaattacaataatccattcgatcctcacaatcctatttcacctgcaaacactcagcaacagctagatcaacaacgtttatttaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcgctgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggagatttttagtaggcgccgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtatatacatgttgttagagtaagatctgcatgatgtgatgattattatataaatatatttctctctctacaaaaaatttctaggctgagttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92339" stop="90915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92039" g_stop="91714" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91215" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="717" r_length="391" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E402206" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92039" e_stop="91714"/>
          <exon e_start="91625" e_stop="91215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAAT---CCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTA---GACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTG</genome_strand>
        <mrna_strand>AAAATGTTGCTGGGGAAGAGGACTCGGCCACCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCTTACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAACA--C-TCAGCAACAGCTAGATCAACAACGTTTATTTACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCGCT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAGATTTTTAGTAGGCGCCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTA-CC-CACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACATGTTGTT-AGAGTAAGATCTGCATGATG--TGATGAT--T-ATTATATAAATATATTTCTCTCTCTAC-AAAA-AATTTCTAGGCTGAGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727371" ref_strand="+" ref_description="SGN-E727371 [LA14CA08]">
      <seq>cgtatttcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctacaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92246" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91946" g_stop="91714" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91225" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="634" r_length="401" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E727371" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91946" e_stop="91714"/>
          <exon e_start="91625" e_stop="91225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGG</genome_strand>
        <mrna_strand>CGTATTTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585559" ref_strand="+" ref_description="SGN-E585559 [68020]">
      <seq>tctaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccatccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcatactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcactgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtaggcgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtatatacatgttgttagagtaagatctgcatgatgtgatgattatataaatatatttctctctctacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92357" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91230" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="718" r_length="374" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E585559" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATT</genome_strand>
        <mrna_strand>TCTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCATCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCATACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCACT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTACCCACACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACATGTTGTT-AGAGTAAGATCTGC---ATG-ATG-TGATGAT--T-ATATAAATATATTTCTCTCTCTACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397724" ref_strand="+" ref_description="SGN-E397724 [TUS-46-L7](-)">
      <seq>aaaaaatgttgtgggggaaggggattgggccaccgaggaagagaacaacaagtatgacagaattcacttagattctcaatttcaataatcctgaccctaatttttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttatgtctctacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92341" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92041" g_stop="91714" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91231" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="720" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E397724" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92041" e_stop="91714"/>
          <exon e_start="91625" e_stop="91231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAAT</genome_strand>
        <mrna_strand>AAAAAATGTTGTGGGGGAAGGGGATTGGGCCACCGAGGAAGAGAACAACAAGTATGACAGAATTCACTTAGATTCTCAATTTCAATAATCCTGACCCTAATTTTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTATGTCTCTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390947" ref_strand="+" ref_description="SGN-E390947 [TUS-46-L8](-)">
      <seq>tacaataatccattcgatcctcacaatcctttttcacttgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtcttgagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggattacatgaagaactccgtcgctgccgccgtagccggcgggaagggatatgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatgtgcatgatgaatgatgatgatgatataaatatatttctctctatacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92225" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91925" g_stop="91714" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91231" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="604" r_length="392" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E390947" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91925" e_stop="91714"/>
          <exon e_start="91625" e_stop="91231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAAT</genome_strand>
        <mrna_strand>TACAATAATCCATTCGATCCTCACAATCCTTTTTCACTTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTTGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGATTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATATGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATGTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTATACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734760" ref_strand="+" ref_description="SGN-E734760 [LB13CB01]">
      <seq>cagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92177" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91877" g_stop="91714" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="557" r_length="393" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E734760" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91877" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>CAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTAAGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733806" ref_strand="+" ref_description="SGN-E733806 [LB11AA03]">
      <seq>cagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctctanaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92177" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91877" g_stop="91714" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="557" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E733806" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91877" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>CAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTANAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217238" ref_strand="+" ref_description="SGN-E217238 [cLEL-21-J19](-)">
      <seq>ttttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92097" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91797" g_stop="91714" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="474" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="489"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E217238" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91797" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>TTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292939" ref_strand="-" ref_description="SGN-E292939 [cLET-11-L4]">
      <seq>ctgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaaaaaaaaaaaaaanannnactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92086" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91786" g_stop="91714" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91233" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="463" r_length="390" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="474"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E292939" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292939" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91786" e_stop="91714"/>
          <exon e_start="91625" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>CTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228874" ref_strand="+" ref_description="SGN-E228874 [cLEL-29-I10](-)">
      <seq>gatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgcccccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctccaaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91921" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91621" g_stop="91233" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="387" polyA_stop="401"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E228874" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91621" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>GATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCCCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTCCAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228620" ref_strand="+" ref_description="SGN-E228620 [cLEL-29-N24](-)">
      <seq>tagtgctttttgcagtctagagtgtagacagccagcagatgaatctagatgagaagaaggacaagtgttcgttggtgtgcatctagaaaggactacccatgaagaactcccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91919" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91619" g_stop="91233" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E228620" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91619" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCTTTTTGCAGTCTAGAGTGTAGACAG-CAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGT-TGCATCTAGAAAGGACTA--CATGAAGAACT-CCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>TAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTGTGCATCTAGAAAGGACTACCCATGAAGAACTCCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227360" ref_strand="+" ref_description="SGN-E227360 [cLEL-30-N18](-)">
      <seq>tagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgcccccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91919" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91619" g_stop="91233" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E227360" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91619" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>TAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCCCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227579" ref_strand="+" ref_description="SGN-E227579 [cLEL-30-N18](-)">
      <seq>gcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctctacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91908" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91608" g_stop="91233" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E227579" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91608" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>GCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308374" ref_strand="+" ref_description="SGN-E308374 [cLEY-25-D16]">
      <seq>gactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatataaatatatttctctctcttcntaaaaaaaaagatttttttttttttataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="91831" stop="90932"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91531" g_stop="91233" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E308374" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91531" e_stop="91233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA</genome_strand>
        <mrna_strand>GACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATG-A--ATGATGATGATGATATAAATATATTTCTCTCTCTTCNTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446815" ref_strand="+" ref_description="SGN-E446815 [cSTA-23-G11]">
      <seq>tctaaatcgaagaagaaaaaaaatgttgctggggaagaggactcggccatccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcatactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcactgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtaggcgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtatatacatgttgntagagtaagatctgcatgatgtgatgattatataaatatatttctctctctacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92357" stop="90936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91235" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="714" r_length="369" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E446815" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.029" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAG-AAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAG</genome_strand>
        <mrna_strand>TCTAAATCGAAGAAGAAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCATCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCATACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCACT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTACCCACACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACATGTTGNT-AGAGTAAGATCTGC---ATG-ATG-TGATGAT--T-ATATAAATATATTTCTCTCTCTACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733341" ref_strand="+" ref_description="SGN-E733341 [LB04CE01]">
      <seq>cctaacacatcttccccactctcactcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92415" stop="90942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92115" g_stop="91714" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91242" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="786" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E733341" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92115" e_stop="91714"/>
          <exon e_start="91625" e_stop="91242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTA</genome_strand>
        <mrna_strand>CCTAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715952" ref_strand="+" ref_description="SGN-E715952 [FB15CH06]">
      <seq>tctaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92351" stop="90942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92051" g_stop="91714" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91242" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="722" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E715952" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92051" e_stop="91714"/>
          <exon e_start="91625" e_stop="91242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTA</genome_strand>
        <mrna_strand>TCTAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612574" ref_strand="+" ref_description="SGN-E612574 [62338]">
      <seq>aaaaaatgttgctggggaagaggactcggccatccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcatactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcactgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtaggcgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccagagacagacaaaaaaatgcatatcaaagctgctatataatatgtatgtatatacctgtcgtcagagtaagatctgcatgatgtgatgattatataactatatttctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92341" stop="90981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92041" g_stop="91714" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91243" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="690" r_length="362" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E612574" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92041" e_stop="91714"/>
          <exon e_start="91625" e_stop="91243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAAT---CCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCT</genome_strand>
        <mrna_strand>AAAAAATGTTGCTGGGGAAGAGGACTCGGCCATCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCATACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCACT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTACCCAGAGACAGA-CAAAAAAATGCATATCAAAGCTGCTATATAATATG--TATGTATATACCTGTCG-TCAGAGTAAGATCTGC---ATG-ATG-TGATGAT--T-ATATAACTATATTTCTCTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717003" ref_strand="+" ref_description="SGN-E717003 [FB18CF07]">
      <seq>atcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaatatatttctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92352" stop="90944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92052" g_stop="91714" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91244" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="721" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E717003" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92052" e_stop="91714"/>
          <exon e_start="91625" e_stop="91244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTC</genome_strand>
        <mrna_strand>ATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733293" ref_strand="+" ref_description="SGN-E733293 [LB04CA01]">
      <seq>cagtaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaagatctgcatgatgaatgatgatgatgatgatataaanannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92344" stop="90956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92045" g_stop="91714" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91255" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="703" r_length="371" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="719"/>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E733293" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92045" e_stop="91714"/>
          <exon e_start="91625" e_stop="91255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATAT</genome_strand>
        <mrna_strand>CAGTAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAANAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722560" ref_strand="+" ref_description="SGN-E722560 [FC17CE09]">
      <seq>cggccgaattactcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtggttaatcagtacgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatgtatatacatgttgttaagagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92401" stop="90992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92102" g_stop="91714" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91289" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="726" r_length="337" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E722560" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92102" e_stop="91714"/>
          <exon e_start="91625" e_stop="91289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCT</genome_strand>
        <mrna_strand>CGGCCGAATTACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446807" ref_strand="+" ref_description="SGN-E446807 [cSTA-23-E11]">
      <seq>tctaaatcgtagaagaaaaaaaatgttgctggggaagaggactcggccatccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcatactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcactgccgccgggaagggatctgatgtctccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtaggcgccatgtatggatcacgaatcaaacgtgatgtggttaattagtacgttacccacacacacacaaaaaatgcatatcaaagctgctatataatatgtatgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92357" stop="91015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91315" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="645" r_length="300" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E446807" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAG-AAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTA</genome_strand>
        <mrna_strand>TCTAAATCGTAGAAGAAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCATCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCATACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCACT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATGTGGTTAATTAGTACGTTACCCACACACACA-C-AAAAAATGCATATCAAAGCTGCTATATAATATGTATGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341829" ref_strand="+" ref_description="SGN-E341829 [cTOF-9-F1]">
      <seq>aagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaanattttagtagacgccatgnttggatcatgaatcaaacgtgaatgtggttaatcaggaccgttacccacacacacaccaaaaaaatgcatatcaaagctgctatataatatgtatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92348" stop="91017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92048" g_stop="91714" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91317" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="646" r_length="311" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E341829" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92048" e_stop="91714"/>
          <exon e_start="91625" e_stop="91317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTG-ATGTGGTTAATCAGTA-CGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATG</genome_strand>
        <mrna_strand>AAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAANATTTTAGTAGACGCCATGNTTGGATCATGAATCAAACGTGAATGTGGTTAATCAGGACCGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390700" ref_strand="+" ref_description="SGN-E390700 [TUS-46-L8]">
      <seq>tcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatgtgggtaatcagtacgttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92367" stop="91069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92067" g_stop="91714" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91369" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="611" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E390700" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92067" e_stop="91714"/>
          <exon e_start="91625" e_stop="91369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACC</genome_strand>
        <mrna_strand>TCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGGTAATCAGTACGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571034" ref_strand="+" ref_description="SGN-E571034 [15713]">
      <seq>tctaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccatccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcatactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcactgccgccgggaagggatctgatgtctccggcacaagcgagactgtcgccgccgtttaggtagtggaaattgttagtaggcgccatgtatggatcacgaatcaaacgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92357" stop="91089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91389" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="572" r_length="228" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E571034" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATG</genome_strand>
        <mrna_strand>TCTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCATCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCATACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCACT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGGCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTGTTAGTAGGCGCCATGTATGGATCACGAATCAAACGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298357" ref_strand="+" ref_description="SGN-E298357 [cLET-41-H11]">
      <seq>taaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttgcgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaaacgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92355" stop="91089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92055" g_stop="91714" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91389" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="579" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E298357" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92055" e_stop="91714"/>
          <exon e_start="91625" e_stop="91389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATG</genome_strand>
        <mrna_strand>TAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTGCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328848" ref_strand="+" ref_description="SGN-E328848 [cTOC-24-M7]">
      <seq>tgcgctttagctctcttctttatcttcccaacacatcttccccactctcactcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaatttttagtagacgccatgtatggatcatgaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92441" stop="91097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92141" g_stop="91714" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91397" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="657" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E328848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92141" e_stop="91714"/>
          <exon e_start="91625" e_stop="91397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAA</genome_strand>
        <mrna_strand>TGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245959" ref_strand="+" ref_description="SGN-E245959 [cLEF-51-G10]">
      <seq>acaacaagtattacagaattcactgtagatctcaatagaaatattcctaaccctaattcttcccttactaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctatatgagaagaaagacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtatccggcgggaaaggatctgacgtttccgccacaagcgagactgtcgccgccgtttaagtagtggaaatttttagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92258" stop="91122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91997" g_stop="91714" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91422" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="488" r_length="204" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E245959" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91997" e_stop="91714"/>
          <exon e_start="91625" e_stop="91422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAG</genome_strand>
        <mrna_strand>ACAACAAGTATTACAGAATTCACTGTAGATCTCAATAGAAATATTCCTAACCCTAATTCTTCCCTTACTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTATATGAGAAGAAAGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTATCCGGCGGGAAAGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAAGTAGTGGAAATTTTTAGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397725" ref_strand="+" ref_description="SGN-E397725 [TUS-46-L7]">
      <seq>tcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagactgtcgccgccgtttaggtagtggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92367" stop="91131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92067" g_stop="91714" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91431" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="549" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E397725" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92067" e_stop="91714"/>
          <exon e_start="91625" e_stop="91431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAAT</genome_strand>
        <mrna_strand>TCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596326" ref_strand="+" ref_description="SGN-E596326 [39617]">
      <seq>ctttctctctctaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccacccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcttactaattacaataatccattcgatcctcacaatcctatttcacctgcaaacactcagcaacagctagatcaacaacgtttatttaccgcacctaaaaccgtttcggccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccgtcgctgccgccgggaagggatctgatgtctccgacacaagcgagactgtcgccgccgtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92363" stop="91142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92066" g_stop="91714" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91442" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="528" r_length="175" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E596326" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92066" e_stop="91714"/>
          <exon e_start="91625" e_stop="91442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAG</genome_strand>
        <mrna_strand>CTTTCTCTCTCTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCTTACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAACA--C-TCAGCAACAGCTAGATCAACAACGTTTATTTACCGCACCTAAAACCGTTTCGGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCGCT---GCC---G-C--CGGGAAGGGATCTGATGTCTCCGACACAAGCGAGACTGTCGCCGCCGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571264" ref_strand="+" ref_description="SGN-E571264 [12033]">
      <seq>ggatcccccggctgcagaatcggcacgaggctctttctctctctaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccacccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcttactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattgaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaagtgttcgttggttgcatctaggaaggactatatgacgaactccggtcgctgccgccgggaagggatctgatgtctccgccacaagcgagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92369" stop="91156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92063" g_stop="91714" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="385" r_length="350" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91456" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="547" r_length="162" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E571264" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92063" e_stop="91714"/>
          <exon e_start="91625" e_stop="91456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAA---TCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTG</genome_strand>
        <mrna_strand>TCTCTCTCTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCTTACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTGACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCG--G-T--CG-C-T-GCCGCCGGGAAGGGATCTGATGTCTCCGCCACAAGCGAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347142" ref_strand="+" ref_description="SGN-E347142 [cTOF-25-K11]">
      <seq>tcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92390" stop="91157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92090" g_stop="91714" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91457" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="546" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E347142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92090" e_stop="91714"/>
          <exon e_start="91625" e_stop="91457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACT</genome_strand>
        <mrna_strand>TCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245883" ref_strand="+" ref_description="SGN-E245883 [cLEF-51-G8]">
      <seq>acaacaagtatgacagaattcactgtagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcgctgccgccgtagccggcgggaagggatctgacgtttccgccacaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92297" stop="91162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91997" g_stop="91714" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91462" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="448" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E245883" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91997" e_stop="91714"/>
          <exon e_start="91625" e_stop="91462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCG</genome_strand>
        <mrna_strand>ACAACAAGTATGACAGAATTCACTGTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570339" ref_strand="+" ref_description="SGN-E570339 [14907]">
      <seq>tcctctctctctctttctctctctaaatcgaagaagaaaaaaatgttgctggggaagaggactcggncacccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcttactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattgaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaacgccgcttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcaaatgaatctagatgagaagaaggacaacgtgttcgttggttgcatctaggaaggactatatgacgaactccgtcgctgccgccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92378" stop="91201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92079" g_stop="91714" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91499" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="493" r_length="128" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E570339" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92079" e_stop="91714"/>
          <exon e_start="91625" e_stop="91499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAA-GTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTA</genome_strand>
        <mrna_strand>TCCTCTCTCTCT-CTTTCTCTCTCTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGNCACCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCTTACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTGACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAAATGAATCTAGATGAGAAGAAGGACAACGTGTTCGTTGGTTGCATCTAGGAAGGACTATATGACGAACTCCGTCGCTGCCGCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282830" ref_strand="+" ref_description="SGN-E282830 [cLER-15-K24]">
      <seq>cgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcgttggttgcatctagaaaggactacatgaagaactccgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92366" stop="91210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92066" g_stop="91714" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91510" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="469" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E282830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92066" e_stop="91714"/>
          <exon e_start="91625" e_stop="91510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCG</genome_strand>
        <mrna_strand>CGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295738" ref_strand="+" ref_description="SGN-E295738 [cLET-25-G13]">
      <seq>gtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaagaaggacaagtgttcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92356" stop="91250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="91714" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91550" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="419" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E295738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="91714"/>
          <exon e_start="91625" e_stop="91550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCG</genome_strand>
        <mrna_strand>GTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313962" ref_strand="+" ref_description="SGN-E313962 [cTOA-19-E10]">
      <seq>tctctccttgcgctttagctctcttctttatcttcccaacacatcttccccactctcactcttcttcttcttcttcctctgttcgctctctctgtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctaaagtgtagacagcagcagatgaatctagatgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92449" stop="91265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92149" g_stop="91714" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="497" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E313962" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92149" e_stop="91714"/>
          <exon e_start="91625" e_stop="91565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCTTGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAG</genome_strand>
        <mrna_strand>TCTCTCCTTGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAAAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289908" ref_strand="+" ref_description="SGN-E289908 [cLET-9-K4]">
      <seq>gtaaatcgaagaagaaaaaaatgttgctggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtaaatctgctgattttctagaaactgctaattttttgaaagcttgcttcctctgtaaacgccggttaatccctggccgggatatctacatgtacagaggagatagtgctttttgcagtctagagtgtagacagcagcagatgaatctagatgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92356" stop="91265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92056" g_stop="91714" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91565" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="404" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E289908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92056" e_stop="91714"/>
          <exon e_start="91625" e_stop="91565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAG</genome_strand>
        <mrna_strand>GTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446871" ref_strand="+" ref_description="SGN-E446871 [cSTA-23-G12]">
      <seq>tctaaatcgaagaagaaaaaaaatgttgctggggaagaggactcggccatccatgaagagaacaagcagcatgacagaattcactttagatctcaatctcaataataatcctgaccctaattcttctcatactaattacaataatccattcgatcctcacaatcctatttcacctgcaaatactcagcaacagctagatcaacaacgtttattcaccgcacctaaaaccgtttccgccagaaaccgccgtaaatctgctgattttctagaaacttctaattttttgaaagcttgcttcctctgtaaaccccccttaatccctggccgcgatatctacatgtacagaggagatagtgctttttgcagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92357" stop="91398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92057" g_stop="91714" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.878" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91625" g_stop="91602" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="369" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E446871" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92057" e_stop="91714"/>
          <exon e_start="91625" e_stop="91602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAATCGAAGAAG-AAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTC---AATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAGGTACGAATTTTTAGTTTTGCTAATAATCCTACTCTTCGACAGTCAATTTACATAAACCATCATTCGTTTGAATTGTCGAATTTTGCAGAGGAGATAGTGCTTTTTGCAGTCT</genome_strand>
        <mrna_strand>TCTAAATCGAAGAAGAAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCATCCATGAAGAGAACAAGCAGCATGACAGAATTCACTTTAGATCTCAATCTCAATAATAATCCTGACCCTAATTCTTCTCATACTAATTACAATAATCCATTCGATCCTCACAATCCTATTTCACCTGCAAATA--C-TCAGCAACAGCTAGATCAACAACGTTTATTCACCGCACCTAAAACCGTTTCCGCCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTTCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACCCCCCTTAATCCCTGGCCGCGATATCTACATGTACAG........................................................................................AGGAGATAGTGCTTTTTGCAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378329" ref_strand="+" ref_description="SGN-E378329 [TUS-46-L7]">
      <seq>aggtcgcgggaactgtaaatcgaagaagaaaaaaatgtttccggggaagaggactcggccaccgatgaagagaacaacaagtatgacagaattcactttagatctcaatctcaataatcctgaccctaattcttctcttagtaattacaataatccattcgatcctcacaatcctttttcacctgcaaacacccagcagcaacacctagatcaacaacgtttattgacagcagcgaaaaccgtttccgtcagaaaccgccgtnaatctgctgattttctagaaactgctaatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="92358" stop="91474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92070" g_stop="91774" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E378329" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92070" e_stop="91774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTT</genome_strand>
        <mrna_strand>AGGTCGCGGGAACTGTAAATCGAAGAAGAAAAAAATGTTTCCGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTNAATCTGCTGATTTTCTAGAAACTGCTAATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="98464" stop="97431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98180" g_stop="97719" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98180" e_stop="97719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGAGTAAATTTTTTCTTCGAATATGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAATTATACCTTGAATTTTGATAGAAGAATCATATATATCCCTAAATA--ATTTTTAAAAAAAATTTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCATGGGTATATGTGAGCCGTTTGTATAACGATAACGGCATATATGAGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTTTATTTTTATGTTATTGATTA</genome_strand>
        <mrna_strand>TTATTGTAGATGA-CCAATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTAT-TTTTTAAAAT-TTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698732" ref_strand="+" ref_description="SGN-E698732 [FA07BG01]">
      <seq>ccgatgagatgccaccccttgatctgaatcttattatggacaaaatatatgggatgctgcatgatctggataatgcgctggaaactgccaactatgacaagcttctgcagtcaggactacagattgcaattattggtcgacctaatgttgggaaatcaagccttcttaatgcatggagcaaaactgatagagcaatagttacaaatattgctggtacgacacgggatgttgtggaagccagtgtttctgttcgtggtgttcctgttacacttcttgatactgcaggaatcagggagactgatgatattgtggaaaaaattggtgtggaaagatctgaagctgttgccagaaatgctgatgtcgtaataatgaccataagtgcagcagaggggtggactccggaggatacaaagctccttgagagaatccaaaggagtcagtttcagactgcgtcaggatgtagctctccattgattctggtaatcaacaaaatagactgtgctccatccgactcttatgaatgggttaatacatgtggcttctccttcaacaagcacattccaacatgtgctgtcaacggtcaagggattccagatcttgaggcagcaataatagaaattatgggtctcaataagatccctgtcggtggtcgcagatggacagtcaaccagagacaatgtgagccacttattcgaacaaaggaggctttcctgaaggttgaaatcgtcaattgaggaagaatatgccctttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="112506" stop="107343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112208" g_stop="112087" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112086" i_stop="111839" i_length="248">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111838" g_stop="111779" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="182" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111778" i_stop="110928" i_length="851">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110927" g_stop="110789" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="321" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110788" i_stop="110189" i_length="600">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110188" g_stop="110070" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="440" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110069" i_stop="108897" i_length="1173">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="108896" g_stop="108666" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="671" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="108665" i_stop="107724" i_length="942">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.562" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107723" g_stop="107643" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="754" r_length="83" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E698732" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112208" e_stop="112087"/>
          <exon e_start="111838" e_stop="111779"/>
          <exon e_start="110927" e_stop="110789"/>
          <exon e_start="110188" e_stop="110070"/>
          <exon e_start="108896" e_stop="108666"/>
          <exon e_start="107723" e_stop="107643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAGGTTTATATTGCACTAAGACTGACCAAGTTCTTATAAAAGCCTAGTGGACTTTTTTCCTGAGAACTAAATAACAAAGCAAGGAGGAGAAAGGAACAAAGGACGCATGTCTTAACTTGTCATTGAATTTGAGAGTAACTTAAAGCACATCTAGCTGTTTAGCTGGCTGTCCAAAAATGGATTTTTTTTTTATGTTTCCCTGCTTTGAACTAATAATTAAGACAACATAATTTTCAATGACTATCTTGCAGATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAAGTATGTTCCACCAATATACCCATTATTTACCATCTCATCATTGATTCCTGTAATTATTGTTTTTTTAAATAGTTATCACTGCTTCTCTTGACAGTGGCATAAACTTTTAACTCAGTAACTAAATCTGAAACAAAATGTGGACCAGTAAATAGAAATCTCACCTGTAATTAGAAACATATACGAAGAAGTTCCATGCAATGCCTAGCTCCCAGTTCTTATAATTTGCATAGGATGTGACTTGCACCTTTAGCTCTAGTTGAGACATTCCAGGGATCCATTGAAGAACACTTCATCACTTTGCTTATTTCTAAAGACCAAATTGTTCCTTCTGGTATGGAAAGTATATATGGATTTGAATCGTTAGTTTCAGAATCTAAATTGTATACTAGCCAGCAATAGGTTATGCTTGACTCAAGTTATCACGATGAATTTAGCTACAAGCCACAATTTGGAACTTTTCCCAAACCAGCAACTGTAGGACAGTAAAAAAAACTAATAATGAACCATTTCAATCCTCTAATTTTTAATTGTCTACCTTAAATTGTCGCATAATATAAAATAACTTGTGTCCTTAACTGTGCGTGATATTTTCAGTATTGCAACTCTTATTGCGTTCCACTTGCTTCTATGACCATATAAACATGATTGTTAATCTTTACTCAAACCCCTACTACTACTTATAACAAGACCATAAATAGAAAGTGTTTCATGACAAATATTTTCCTCAAAATATAAAGTCATATTAAGCACACTCCCATTCTTTAGAATTTCTCTAGTCTAAAGTGTCTGCTTCCCGTGCTATTATCTTGCTGGCATTCATTTCTAATCACGTGCCTTCTATTAGCGTGCAGACTGATAGAGCAATAGTTACAAATATTGCTGGTACGACACGGGATGTTGTGGAAGCCAGTGTTTCTGTTCGTGGTGTTCCTGTTACACTTCTTGATACTGCAGGAATCAGGGAGACTGATGATATTGTGGAAAAAATTGGTAAGACCTTTTTATTTGCCAAGTTTATATCATTTCGAATATTGACTGGAGCCTGCTGCTGAAATTTTGGTCATTGAACAGATAAAATATTTAATGAACCAGATTATTACTATTATTATATAATAAATTCCTTTTTCATTGAGAAGATTTACCCTTGAAAGACAATTTATCATTTCTGATACAGAGTCTGATGGCTCAATACTTCTTATGCATTTAAGTGTATTTCTGTCATTTCTACATTTGTTTTCTCATCTAACTCGTGGCATTTAGCTTATATTTGGATCAGAAACATTACTTCATTTTTAGAGTTTGCTCATGATTGTGTCTCCAAAGAATTGCATATGTTTAATGTGTATGCACTTTCAGAGCTATCATTGATCTTGCATCAACATTTCTTTTGTTTAATCTCCGGTTGGAGTTCTTGGTGAACGTAGTCACCACCCAATGATGGTTCCTTGTTATGTTACCTCAGCATTGTATTTCTTGAACTCTAATTAATGATATTGTTTCGTAGTCTCCTTTTATTCCATCAGTGAAATTAGAGATGAACTAGCTGTTAAATTTCTATTTTATTTGATTTTCCTAGCAAATCATTCACAGGTGTGGAAAGATCTGAAGCTGTTGCCAGAAATGCTGATGTCGTAATAATGACCATAAGTGCAGCAGAGGGGTGGACTCCGGAGGATACAAAGCTCCTTGAGAGAATCCAAAGGAGTCAGGTTTATAAGCTATTCCATTCACGTTATCAGTAACTTTGAATATGAAATGGTCTGTTTCTTCCTAATCTGAACTTCTATAATCTGTTATCGTCAAGTTGAAGAAAGATATACTTGCTTTATTTTGTCTTGTTATTATTGGTTTCCATTAATTTGAGTTTGTCAAAGTAAGTCTAGTATGGATATTTGTTGCATCTGCTGGAAGTTAGTGTGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAATTATTGTTAGACAGCTGCAGTTGATTTTTGTTTCTGCAGCTCTGCTATTCTTTTCTGGTATTAGGAGAAAACATTTGACATTAAGTTTATTTCTGTAGTTTCAGACTGCGTCAGGATGTAGCTCTCCATTGATTCTGGTAATCAACAAAATAGACTGTGCTCCATCCGACTCTTATGAATGGGTTAATACATGTGGCTTCTCCTTCAACAAGCACATTCCAACATGTGCTGTCAACGGTCAAGGGATTCAAGATCTTGAGGCAGCAATAATAGAAATTATGGGTCTCAATAAGATCCCTGTCGGTGGTCGCAGATGGACAGTCAACCAGGTTAGCTTGCTGCCATCTTTTTCTCTCTCAGAGTCCTTAATGTAGAACCATGTTTTTACATTGTTACATAGACTTGTGCTGGTTAAAAAGTAAAAGAAAATGGCTTATTCTACGGTAAAGGAATGAGGAGAATGCTGATTTCATGCTAGATAACTCTGATGAGAATCGGCATATGATTTTTGAACCTTCTGTCAGGAGTGGAATCAGGGGAAGTAAAAGTAATCTTCAGACTTACTATGAACAAATTGTTCTCATTATCTCCTTAAGTAATACTCTAGTGTCTAGCTTTTTACCTAAAAAGGAAAAAGGTAACGAGAGGATAAATGAGTGGTAAAATGAGAGTTAGCAATTGAAAAATCTATCTGTATCTTTATTAAAAACAAGGTTACAAATATTGTCTGTTATTTCAGTTGAATCCTTGTGATGGTATCAAACTGCTTGCGACTTAATTTTCCTCAACCTTCTATCTGAATTCATCTGTCATTACAGATGATCTTTCTTATTTGCATATCTTTCTCCTCGTTTCTTTTTATGCATGAATGATGAAATCTATTCCTTGCATTAAGGATGGTAAGAACTGTTTAGACAGGAAAATCGTGTTAGTTCTAGATCTTCTCATACTGAGATCTTCAACATTAGGTGTTGGTGTGTCCTTTAGGCATAGCGGCATTTGCCATTTAACATATTGTCAAATGTCCTACCGAATTGGACTGCTAAGAAAAGCTTTGTTACTACCTCAAACTTGAATCACTCTAGACCTACACGACTACACTAATGTCTCCTACTCTTCACTAAAAGGACTGTGCTTTTTATGTTGTTCTCTATGAAGTCGACTTTTTTAAGGTATTCATTCCTTATTTATAGTCCGTCCATCTATAATTTCATGGCATTATAGTAAGAAACACAATTCTTCACTAAACGGCAGCTTTTTCTGGTTTCCAGAGACAATGTGAGCAGCTTATTCGAACAAAGGAGGCTTTCATG-AGGTTGAAATCGTCAATTGAGGAAG-ATATGCCCTTTGAT</genome_strand>
        <mrna_strand>CCGATGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAG........................................................................................................................................................................................................................................................ATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATAGAGCAATAGTTACAAATATTGCTGGTACGACACGGGATGTTGTGGAAGCCAGTGTTTCTGTTCGTGGTGTTCCTGTTACACTTCTTGATACTGCAGGAATCAGGGAGACTGATGATATTGTGGAAAAAATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAAAGATCTGAAGCTGTTGCCAGAAATGCTGATGTCGTAATAATGACCATAAGTGCAGCAGAGGGGTGGACTCCGGAGGATACAAAGCTCCTTGAGAGAATCCAAAGGAGTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAGACTGCGTCAGGATGTAGCTCTCCATTGATTCTGGTAATCAACAAAATAGACTGTGCTCCATCCGACTCTTATGAATGGGTTAATACATGTGGCTTCTCCTTCAACAAGCACATTCCAACATGTGCTGTCAACGGTCAAGGGATTCCAGATCTTGAGGCAGCAATAATAGAAATTATGGGTCTCAATAAGATCCCTGTCGGTGGTCGCAGATGGACAGTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAATGTGAGCCACTTATTCGAACAAAGGAGGCTTTCCTGAAGGTTGAAATCGTCAATTGAGGAAGAATATGCCCTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740594" ref_strand="+" ref_description="SGN-E740594 [LC22AE05]">
      <seq>tgctctatattatgcaaccaatgaagagccaaagttatcatcagtaagctggagactactagtgccttcttaaacttaagagtcacctaaagagggcccatggagaatgggagtaggtacagttaaagatagttccccagttcagtgtttgagtcgctgcaagtggatattgcattttgaagtttcaatctattataagaaatactgaaacttgatgatctggaggtattctgttatgttcaaatttaagcaagaagtgtgtactataatgcgatgtcttcaaggaataagaaagatgcaaggtgtcttattctgaacttaataaaaaagtatcttacattgttgaataacaaattaaaaaagaaatggaattgagaggaggagactaaggaagatttcactatctttttaaattattagggagctttgccaaagatgaagggagatagaagagctgaataaaattagggtttctagcttcatctgaagctgatatctaaagaaaagaccgaaagaacagttaagtgctcatattgaatggcctttgtactttatatgctagttcttaataacatacaagtttccgctctgtccccacacctgaaataagggcctaggaaaatgagacacctttccacgtatttgtattcaacttggacccatgtatgtaagaaagaccaaggctattgacggaatctatgttgcaaaacttgttctgattgatttaagatttgcttttttgaagtaagaagtttgtgatttgtgtctagagaattccatctttcttcatgaaaaaatttatatattctcctttatcattgaacttgtagaagaaagtcaccataattacttaagcttttgttttcaattattgttagacagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="110161" stop="108678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109861" g_stop="108978" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="885" r_length="885" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E740594" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109861" e_stop="108978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTT-AGCTTTTGTTTTCAATTATTGTTAGACAGCTG</genome_strand>
        <mrna_strand>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAAGCTTTTGTTTTCAATTATTGTTAGACAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738022" ref_strand="+" ref_description="SGN-E738022 [LC12AC04]">
      <seq>cgctctatattatgcaaccaatgaagagccaaagttatcatcagtaagctggagactactagtgccttcttaaacttaagagtcacctaaagagggcccatggagaatgggagtaggtacagttaaagatagttccccagttcagtgtttgagtcgctgcaagtggatattgcattttgaagtttcaatctattataagaaatactgaaacttgatgatctggaggtattctgttatgttcaaatttaagcaagaagtgtgtactataatgcgatgtcttcaaggaataagaaagatgcaaggtgtcttattctgaacttaataaaaaagtatcttacattgttgaataacaaattaaaaaagaaatggaattgagaggaggagactaaggaagatttcactatctttttaaattattagggagctttgccaaagatgaagggagatagaagagctgaataaaattagggtttctagcttcatctgaagctgatatctaaagaaaagaccgaaagaacagttaagtgctcatattgaatggcctttgtactttatatgctagttcttaataacatacaagtttccgctctgtccccacacctgaaataagggcctaggaaaatgagacacctttccacgtatttgtattcaacttggacccatgtatgtaagaaagaccaaggctattgacggaatctatgttgcaaaacttgttctgattgatttaagatttgcttttttgaagtaagaagtttgtgatttgtgtctagagaattccatctttcttcatgaaaaaatttatatattctcctttatcattgaacttgtagaagaaagtcaccataattacttagcttttgttttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="110160" stop="108696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109861" g_stop="108995" g_length="867"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="867" r_length="867" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-E738022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109861" e_stop="108995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAA</genome_strand>
        <mrna_strand>CGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>148</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5381" PGL_stop="221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4356" e_stop="4297"/>
            <exon e_start="4204" e_stop="4037"/>
            <exon e_start="3941" e_stop="3093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.822" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4356" e_stop="4297" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="0.822" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4296" i_stop="4205" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4204" e_stop="4037" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4036" i_stop="3942" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="3941" e_stop="3093" e_length="849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4356" stop="4297"/>
              <exon start="4204" stop="4037"/>
              <exon start="3941" stop="3680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3753" stop="3283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3710" stop="3093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3710" stop="3310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTG : AGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAG : GAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAGGTAATATAGATTTTTTAGCCTTTTCTTGTTTGGATTTATGTTAACCTTTGATCAAGAAAATCGTGGACTGGTCTGCCTCCCTGTAGTTCTTTGTGATTGATTTAGTCTCTGTTGTCTCATTTTGCATTATTCAATTAAACCTGGCAAACGACTCCCATGGCTGCCTTTCTCATTCTTGCCTTTCATGTTTTTTTTCCTCATTCATTTTTAACTGGTTTTTTTAGTTGTTTGTTATTTTACATCATTATGAGTTAGTTTAAACAAAAGGATTTTTTTTTTGAAACTGGTAATGTATAAAAGGATTTGGTTATTTACAGTCTAACCATTGTGTGAGCTTTTGGTCGATGATCCGCGTCGCCTTTTTCTCCTCTCCATGCAATAACTATACTTCTGCAGGTGCTCTGCTCCTAATGTTCTGGATATTTTGATTTAAACTGTTAGGCTGTTGGTTCACCCTTTCATTAATTCCAGAGGTATGGAGTCTGCATCCTCATCGAAGAATTCAGTGAGTTTGATGCTTGATATGGAACAACTTAGAGATTGACTATGTGTGTGTCTAACTCATTTGTGGACAGCTTTCTGGAATAATAATTCACCAGATCCAATATGTTTGAGAGATGCCTCTTATGGCCTCCAAGCTGGTGAATTTGCATCTGATGTAAATTTAGTGTTACTATTTCTTGATGCAGCTAATTTCTTTTTCTTCTTCTGTTCAGAAATCCAAAAGATATTGCCGAATTTGACTTTTGCCAGTTTCTTCTA</gDNA_template>
            <first_frame> P  R  S  T  D  P  D  I  S  A  D  S  E  F  E  D  D  F  E  V  :  R  K  S  K  L  D  T  S  A  I  E  A  R  N  G  K  D  I  Q  G  I  P  W  E  R  L  N  F  T  R  D  K  Y  R  E  T  R  L  K  Q  Y  K  N  Y  E  S  L  S  R  S  R  E  D  L  E  K  :  E  C  K  E  V  G  K  G  H  S  F  Y  D  F  Q  F  N  T  R  L  V  K  S  T  I  V  H  F  Q  V  I  *  I  F  *  P  F  L  V  W  I  Y  V  N  L  *  S  R  K  S  W  T  G  L  P  P  C  S  S  L  *  L  I  *  S  L  L  S  H  F  A  L  F  N  *  T  W  Q  T  T  P  M  A  A  F  L  I  L  A  F  H  V  F  F  P  H  S  F  L  T  G  F  F  S  C  L  L  F  Y  I  I  M  S  *  F  K  Q  K  D  F  F  F  E  T  G  N  V  *  K  D  L  V  I  Y  S  L  T  I  V  *  A  F  G  R  *  S  A  S  P  F  S  P  L  H  A  I  T  I  L  L  Q  V  L  C  S  *  C  S  G  Y  F  D  L  N  C  *  A  V  G  S  P  F  H  *  F  Q  R  Y  G  V  C  I  L  I  E  E  F  S  E  F  D  A  *  Y  G  T  T  *  R  L  T  M  C  V  S  N  S  F  V  D  S  F  L  E  *  *  F  T  R  S  N  M  F  E  R  C  L  L  W  P  P  S  W  *  I  C  I  *  C  K  F  S  V  T  I  S  *  C  S  *  F  L  F  L  L  L  F  R  N  P  K  D  I  A  E  F  D  F  C  Q  F  L  L </first_frame>
            <second_frame>  R  E  V  L  T  R  I  S  L  Q  T  R  N  L  R  T  I  L  K  * :   E  S  Q  S  W  I  H  Q  L  *  K  L  E  M  A  R  I  Y  R  E  Y  L  G  K  G  L  I  L  P  E  T  S  T  A  R  R  G  *  S  S  I  R  T  T  R  A  C  L  A  L  V  K  I  L  K  R :   S  A  R  K  *  E  K  D  T  A  S  T  T  S  S  S  I  Q  G  S  S  N  Q  L  S  C  T  F  R  *  Y  R  F  F  S  L  F  L  F  G  F  M  L  T  F  D  Q  E  N  R  G  L  V  C  L  P  V  V  L  C  D  *  F  S  L  C  C  L  I  L  H  Y  S  I  K  P  G  K  R  L  P  W  L  P  F  S  F  L  P  F  M  F  F  F  L  I  H  F  *  L  V  F  L  V  V  C  Y  F  T  S  L  *  V  S  L  N  K  R  I  F  F  L  K  L  V  M  Y  K  R  I  W  L  F  T  V  *  P  L  C  E  L  L  V  D  D  P  R  R  L  F  L  L  S  M  Q  *  L  Y  F  C  R  C  S  A  P  N  V  L  D  I  L  I  *  T  V  R  L  L  V  H  P  F  I  N  S  R  G  M  E  S  A  S  S  S  K  N  S  V  S  L  M  L  D  M  E  Q  L  R  D  *  L  C  V  C  L  T  H  L  W  T  A  F  W  N  N  N  S  P  D  P  I  C  L  R  D  A  S  Y  G  L  Q  A  G  E  F  A  S  D  V  N  L  V  L  L  F  L  D  A  A  N  F  F  F  F  F  C  S  E  I  Q  K  I  L  P  N  L  T  F  A  S  F  F   </second_frame>
            <third_frame>   A  K  Y  *  P  G  Y  L  C  R  L  G  I  *  G  R  F  *  S   : E  K  V  K  A  G  Y  I  S  Y  R  S  *  K  W  Q  G  Y  T  G  N  T  L  G  K  A  *  F  Y  Q  R  Q  V  P  R  D  E  V  E  A  V  *  E  L  R  E  P  V  S  L  S  *  R  S  *  K   : G  V  Q  G  S  R  K  R  T  Q  L  L  R  L  P  V  Q  Y  K  A  R  Q  I  N  Y  R  A  L  S  G  N  I  D  F  L  A  F  S  C  L  D  L  C  *  P  L  I  K  K  I  V  D  W  S  A  S  L  *  F  F  V  I  D  L  V  S  V  V  S  F  C  I  I  Q  L  N  L  A  N  D  S  H  G  C  L  S  H  S  C  L  S  C  F  F  S  S  F  I  F  N  W  F  F  *  L  F  V  I  L  H  H  Y  E  L  V  *  T  K  G  F  F  F  *  N  W  *  C  I  K  G  F  G  Y  L  Q  S  N  H  C  V  S  F  W  S  M  I  R  V  A  F  F  S  S  P  C  N  N  Y  T  S  A  G  A  L  L  L  M  F  W  I  F  *  F  K  L  L  G  C  W  F  T  L  S  L  I  P  E  V  W  S  L  H  P  H  R  R  I  Q  *  V  *  C  L  I  W  N  N  L  E  I  D  Y  V  C  V  *  L  I  C  G  Q  L  S  G  I  I  I  H  Q  I  Q  Y  V  *  E  M  P  L  M  A  S  K  L  V  N  L  H  L  M  *  I  *  C  Y  Y  F  L  M  Q  L  I  S  F  S  S  S  V  Q  K  S  K  R  Y  C  R  I  *  L  L  P  V  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4356" stop="4297"/>
                    <exon start="4204" stop="4037"/>
                    <exon start="3941" stop="3846"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRSTDPDISADSEFEDDFEVRKSKLDTSAIEARNGKDIQGIPWERLNFTRDKYRETRLKQYKNYESLSRSREDLEKECKEVGKGHSFYDFQFNTRLVKSTIVHFQVI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3310" stop="3095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCVCLTHLWTAFWNNNSPDPICLRDASYGLQAGEFASDVNLVLLFLDAANFFFFFCSEIQKILPNLTFASFF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2984" e_stop="2224"/>
            <exon e_start="651" e_stop="517"/>
            <exon e_start="437" e_stop="327"/>
            <exon e_start="246" e_stop="221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.876" e_score="0.942"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.943" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.942">
            <gDNA_exon_boundary e_start="2984" e_stop="2224" e_length="761"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.876">
            <gDNA_intron_boundary i_start="2223" i_stop="652" i_length="1572"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="651" e_stop="517" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="437" e_stop="327" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.943">
            <gDNA_intron_boundary i_start="326" i_stop="247" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="246" e_stop="221" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2984" stop="2333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2716" stop="2224"/>
              <exon start="651" stop="517"/>
              <exon start="437" stop="327"/>
              <exon start="246" stop="221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2716" stop="2224"/>
              <exon start="651" stop="569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCGATTGATGTATTGATCAGAGAGCAGTGTTCACAATATCCTTTTTTATGCAGATTACAAACATTTAAAGAAGTGTCTTATGGAACTTTGTAATTGTAGAAGATCCTTGTTTTGGAACTTCACTCTTGAATATTTCATCATGAATCAGCTGAATGTATTTTGAGGACTGGGTTTTGATATGGAAGCTTAGGAGTGAGGACAGAACCTGGCTTATGCTGGATTTGTAGTTTGTCGTTTTTTGCTGACATAGAATATAGTTCTGACTTCTGAGTCAAAGTTGTTTGTTATGTTCCATTCTACTACTTGTGTGACAGATCTACTTTTGCAGTGTCAAACATAACAGTGGAGGCTGATGGTTGAAATTTCCGAACTTCCAATTCTCTTTTGTGTGTCCCTCTAGAGAATAATCTTGATTTTATTTCAATTCATCTGTCGTGGTCCTCCATTTTCAGTTGGTCGTTAACTAGTTCTGTTGCCTCTTCTGCATGGTTCATCCCTTTCTATTCAAGGCCCATTGTTCATTGCAAACCTTTCTCGGCTGTTGCTCTAGAAGAGTTTGAGTTGATGAACATTTTTTTGCTAGTCATTATGTGAAAGTGGTTGTGTTTTAATTCTTGTTGTAAATGATGTTTGTTTGAATTGTTTTCTTTCAAATAAATAACCAGATATTGTATGTGCATTGTTATTGTATCTATCTTTCAGCCTTACAAGCAGGTTGCAGTTATTATGTGAGCAGCTGGTGCAAGCATTTTCCATATG : TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATG : AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGGTTTCCAAGGGGAGCTTATCTGTAAG : TATTTAAACCAACCTGGAGTTGCATT</gDNA_template>
            <first_frame> P  R  L  M  Y  *  S  E  S  S  V  H  N  I  L  F  Y  A  D  Y  K  H  L  K  K  C  L  M  E  L  C  N  C  R  R  S  L  F  W  N  F  T  L  E  Y  F  I  M  N  Q  L  N  V  F  *  G  L  G  F  D  M  E  A  *  E  *  G  Q  N  L  A  Y  A  G  F  V  V  C  R  F  L  L  T  *  N  I  V  L  T  S  E  S  K  L  F  V  M  F  H  S  T  T  C  V  T  D  L  L  L  Q  C  Q  T  *  Q  W  R  L  M  V  E  I  S  E  L  P  I  L  F  C  V  S  L  *  R  I  I  L  I  L  F  Q  F  I  C  R  G  P  P  F  S  V  G  R  *  L  V  L  L  P  L  L  H  G  S  S  L  S  I  Q  G  P  L  F  I  A  N  L  S  R  L  L  L  *  K  S  L  S  *  *  T  F  F  C  *  S  L  C  E  S  G  C  V  L  I  L  V  V  N  D  V  C  L  N  C  F  L  S  N  K  *  P  D  I  V  C  A  L  L  L  Y  L  S  F  S  L  T  S  R  L  Q  L  L  C  E  Q  L  V  Q  A  F  S  I  C :   *  G  I  S  C  G  R  H  Q  N  M  M  C  I  S  C  K  T  T  L  *  C  T  G  P  H  F  L  E  R  G  K  K  C  L  M  L  L  G  H  *  R  P  L  * :   N  T  L  D  Q  R  L  K  H  F  P  E  C  R  S  A  L  W  L  L  E  M  V  C  W  L  L  G  V  S  K  G  S  L  S  V  S :   I  *  T  N  L  E  L  H  </first_frame>
            <second_frame>  L  D  *  C  I  D  Q  R  A  V  F  T  I  S  F  F  M  Q  I  T  N  I  *  R  S  V  L  W  N  F  V  I  V  E  D  P  C  F  G  T  S  L  L  N  I  S  S  *  I  S  *  M  Y  F  E  D  W  V  L  I  W  K  L  R  S  E  D  R  T  W  L  M  L  D  L  *  F  V  V  F  C  *  H  R  I  *  F  *  L  L  S  Q  S  C  L  L  C  S  I  L  L  L  V  *  Q  I  Y  F  C  S  V  K  H  N  S  G  G  *  W  L  K  F  P  N  F  Q  F  S  F  V  C  P  S  R  E  *  S  *  F  Y  F  N  S  S  V  V  V  L  H  F  Q  L  V  V  N  *  F  C  C  L  F  C  M  V  H  P  F  L  F  K  A  H  C  S  L  Q  T  F  L  G  C  C  S  R  R  V  *  V  D  E  H  F  F  A  S  H  Y  V  K  V  V  V  F  *  F  L  L  *  M  M  F  V  *  I  V  F  F  Q  I  N  N  Q  I  L  Y  V  H  C  Y  C  I  Y  L  S  A  L  Q  A  G  C  S  Y  Y  V  S  S  W  C  K  H  F  P  Y   : V  E  E  S  L  V  V  D  I  K  T  *  C  V  S  H  A  K  L  L  C  D  A  L  V  L  T  S  W  K  G  G  R  S  A  *  C  C  *  A  I  D  A  H  Y   : E  I  P  W  I  S  V  S  N  T  S  P  S  A  D  Q  H  Y  G  C  *  R  W  F  A  G  C  W  G  F  P  R  G  A  Y  L  *   : V  F  K  P  T  W  S  C  I </second_frame>
            <third_frame>   S  I  D  V  L  I  R  E  Q  C  S  Q  Y  P  F  L  C  R  L  Q  T  F  K  E  V  S  Y  G  T  L  *  L  *  K  I  L  V  L  E  L  H  S  *  I  F  H  H  E  S  A  E  C  I  L  R  T  G  F  *  Y  G  S  L  G  V  R  T  E  P  G  L  C  W  I  C  S  L  S  F  F  A  D  I  E  Y  S  S  D  F  *  V  K  V  V  C  Y  V  P  F  Y  Y  L  C  D  R  S  T  F  A  V  S  N  I  T  V  E  A  D  G  *  N  F  R  T  S  N  S  L  L  C  V  P  L  E  N  N  L  D  F  I  S  I  H  L  S  W  S  S  I  F  S  W  S  L  T  S  S  V  A  S  S  A  W  F  I  P  F  Y  S  R  P  I  V  H  C  K  P  F  S  A  V  A  L  E  E  F  E  L  M  N  I  F  L  L  V  I  M  *  K  W  L  C  F  N  S  C  C  K  *  C  L  F  E  L  F  S  F  K  *  I  T  R  Y  C  M  C  I  V  I  V  S  I  F  Q  P  Y  K  Q  V  A  V  I  M  *  A  A  G  A  S  I  F  H  M  :  L  R  N  L  L  W  S  T  S  K  H  D  V  Y  L  M  Q  N  Y  S  V  M  H  W  S  S  L  L  G  K  G  E  E  V  L  N  V  A  R  P  L  T  P  T  M  :  K  Y  P  G  S  A  S  Q  T  L  P  R  V  Q  I  S  T  M  A  V  R  D  G  L  L  A  A  G  G  F  Q  G  E  L  I  C  K  :  Y  L  N  Q  P  G  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2250" stop="2224"/>
                    <exon start="651" stop="517"/>
                    <exon start="437" stop="327"/>
                    <exon start="246" stop="223"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAGASIFHMLRNLLWSTSKHDVYLMQNYSVMHWSSLLGKGEEVLNVARPLTPTMKYPGSASQTLPRVQISTMAVRDGLLAAGGFQGELICKYLNQPGVA</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2622" stop="2389"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFRTSNSLLCVPLENNLDFISIHLSWSSIFSWSLTSSVASSAWFIPFYSRPIVHCKPFSAVALEEFELMNIFLLVIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="5101" e_stop="4554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="5101" e_stop="4554" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5101" stop="4554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330840" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTATTGCCCTCTTTTCTATGCTAATACCTGTGAAAATGCATGCTGAGTTTTTTCTGCGATGACCTTTTCTATACTTTAGTTTTGATGTTGTTAAGCTTTTTATTCCACAATATTTTGGCTATTTTCTATAGTTTTTGATGTTATTAAGCTTTTTATTCCACTGAATTCTGGCTACTTTGTATAGTTTGATGTTGTTAAGCTTTTTATTCCACTGTATTCTGTCTATTTTCTGTAGTTTTTATGTTGTTAAGCTGTTTATTCCACTGAATTCTGGTGATTTTCTATAGTTTTGATGTTATTAATCTTTTTATTCCACTAAATACTGGCTACTTCCTATTATTTTGATGTTTTTCTCGGCTAAATTCTCGCTATCTTCTGTAGTTTTGATGTTGTTAAGATTTTGTCTCCACTAAAATCTGACAGTTTTCTATTGTTTGCGAAATTCACCTTGTAATTCAAAAATTTAAATGTTTTCCTTAGTAGATTTGTTTTTAATAAATATTTCATATAAATGGTTTAGTATTTCAATTTTTTGCTAATCTTTTT</gDNA_template>
            <first_frame> F  Y  C  P  L  F  Y  A  N  T  C  E  N  A  C  *  V  F  S  A  M  T  F  S  I  L  *  F  *  C  C  *  A  F  Y  S  T  I  F  W  L  F  S  I  V  F  D  V  I  K  L  F  I  P  L  N  S  G  Y  F  V  *  F  D  V  V  K  L  F  I  P  L  Y  S  V  Y  F  L  *  F  L  C  C  *  A  V  Y  S  T  E  F  W  *  F  S  I  V  L  M  L  L  I  F  L  F  H  *  I  L  A  T  S  Y  Y  F  D  V  F  L  G  *  I  L  A  I  F  C  S  F  D  V  V  K  I  L  S  P  L  K  S  D  S  F  L  L  F  A  K  F  T  L  *  F  K  N  L  N  V  F  L  S  R  F  V  F  N  K  Y  F  I  *  M  V  *  Y  F  N  F  L  L  I  F   </first_frame>
            <second_frame>  F  I  A  L  F  S  M  L  I  P  V  K  M  H  A  E  F  F  L  R  *  P  F  L  Y  F  S  F  D  V  V  K  L  F  I  P  Q  Y  F  G  Y  F  L  *  F  L  M  L  L  S  F  L  F  H  *  I  L  A  T  L  Y  S  L  M  L  L  S  F  L  F  H  C  I  L  S  I  F  C  S  F  Y  V  V  K  L  F  I  P  L  N  S  G  D  F  L  *  F  *  C  Y  *  S  F  Y  S  T  K  Y  W  L  L  P  I  I  L  M  F  F  S  A  K  F  S  L  S  S  V  V  L  M  L  L  R  F  C  L  H  *  N  L  T  V  F  Y  C  L  R  N  S  P  C  N  S  K  I  *  M  F  S  L  V  D  L  F  L  I  N  I  S  Y  K  W  F  S  I  S  I  F  C  *  S  F  </second_frame>
            <third_frame>   L  L  P  S  F  L  C  *  Y  L  *  K  C  M  L  S  F  F  C  D  D  L  F  Y  T  L  V  L  M  L  L  S  F  L  F  H  N  I  L  A  I  F  Y  S  F  *  C  Y  *  A  F  Y  S  T  E  F  W  L  L  C  I  V  *  C  C  *  A  F  Y  S  T  V  F  C  L  F  S  V  V  F  M  L  L  S  C  L  F  H  *  I  L  V  I  F  Y  S  F  D  V  I  N  L  F  I  P  L  N  T  G  Y  F  L  L  F  *  C  F  S  R  L  N  S  R  Y  L  L  *  F  *  C  C  *  D  F  V  S  T  K  I  *  Q  F  S  I  V  C  E  I  H  L  V  I  Q  K  F  K  C  F  P  *  *  I  C  F  *  *  I  F  H  I  N  G  L  V  F  Q  F  F  A  N  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="5381" e_stop="5237"/>
            <exon e_start="4453" e_stop="4297"/>
            <exon e_start="4204" e_stop="4037"/>
            <exon e_start="3941" e_stop="3855"/>
            <exon e_start="651" e_stop="517"/>
            <exon e_start="437" e_stop="352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.986"/>
          <exon-intron don_prob="0.822" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.876" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.978"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="5381" e_stop="5237" e_length="145"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="5236" i_stop="4454" i_length="783"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4453" e_stop="4297" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.822" acc_prob="0.996">
            <gDNA_intron_boundary i_start="4296" i_stop="4205" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4204" e_stop="4037" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="4036" i_stop="3942" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3941" e_stop="3855" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.876">
            <gDNA_intron_boundary i_start="3854" i_stop="652" i_length="3203"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="651" e_stop="517" e_length="135"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="516" i_stop="438" i_length="79"/>
          </intron>
          <exon e_serial="6" e_score="0.965">
            <gDNA_exon_boundary e_start="437" e_stop="352" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5381" stop="5237"/>
              <exon start="4453" stop="4297"/>
              <exon start="4204" stop="4037"/>
              <exon start="3941" stop="3855"/>
              <exon start="651" stop="517"/>
              <exon start="437" stop="352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTATACACTGTTTCTCACTAATTTTCAATTAGTTTTCACAGTTTAATTATCTGAAGAACTCCGGAGATTTTTTTCCGGCGTGAGGTGGTTACTTTTTCCATTTGTTTCTCGTGAAAATCTCTCAACTTCCGATACTTTCAAG : GATAATGGCTCTCTCTCAAAATCAGGAGTTGGAGTATATGGTGGATGAGTACTATGACACTACTGATTTTGATGACAGCACTTTTGGGGGTGAATCGCCGCGAAGTACTGACCCGGATATCTCTGCAGACTCGGAATTTGAGGACGATTTTGAAGTG : AGAAAGTCAAAGCTGGATACATCAGCTATAGAAGCTAGAAATGGCAAGGATATACAGGGAATACCTTGGGAAAGGCTTAATTTTACCAGAGACAAGTACCGCGAGACGAGGTTGAAGCAGTATAAGAACTACGAGAGCCTGTCTCGCTCTCGTGAAGATCTTGAAAAG : GAGTGCAAGGAAGTAGGAAAAGGACACAGCTTCTACGACTTCCAGTTCAATACAAGGCTCGTCAAATCAACTATCGTGCACTTTCAG : TTGAGGAATCTCTTGTGGTCGACATCAAAACATGATGTGTATCTCATGCAAAACTACTCTGTGATGCACTGGTCCTCACTTCTTGGAAAGGGGGAAGAAGTGCTTAATGTTGCTAGGCCATTGACGCCCACTATG : AAATACCCTGGATCAGCGTCTCAAACACTTCCCCGAGTGCAGATCAGCACTATGGCTGTTAGAGATGGTTTGCTGGCTGCTGGGGG</gDNA_template>
            <first_frame> K  L  Y  T  V  S  H  *  F  S  I  S  F  H  S  L  I  I  *  R  T  P  E  I  F  F  R  R  E  V  V  T  F  S  I  C  F  S  *  K  S  L  N  F  R  Y  F  Q   : G  *  W  L  S  L  K  I  R  S  W  S  I  W  W  M  S  T  M  T  L  L  I  L  M  T  A  L  L  G  V  N  R  R  E  V  L  T  R  I  S  L  Q  T  R  N  L  R  T  I  L  K  * :   E  S  Q  S  W  I  H  Q  L  *  K  L  E  M  A  R  I  Y  R  E  Y  L  G  K  G  L  I  L  P  E  T  S  T  A  R  R  G  *  S  S  I  R  T  T  R  A  C  L  A  L  V  K  I  L  K  R :   S  A  R  K  *  E  K  D  T  A  S  T  T  S  S  S  I  Q  G  S  S  N  Q  L  S  C  T  F  S :   *  G  I  S  C  G  R  H  Q  N  M  M  C  I  S  C  K  T  T  L  *  C  T  G  P  H  F  L  E  R  G  K  K  C  L  M  L  L  G  H  *  R  P  L  * :   N  T  L  D  Q  R  L  K  H  F  P  E  C  R  S  A  L  W  L  L  E  M  V  C  W  L  L  G  </first_frame>
            <second_frame>  S  Y  T  L  F  L  T  N  F  Q  L  V  F  T  V  *  L  S  E  E  L  R  R  F  F  S  G  V  R  W  L  L  F  P  F  V  S  R  E  N  L  S  T  S  D  T  F  K  :  D  N  G  S  L  S  K  S  G  V  G  V  Y  G  G  *  V  L  *  H  Y  *  F  *  *  Q  H  F  W  G  *  I  A  A  K  Y  *  P  G  Y  L  C  R  L  G  I  *  G  R  F  *  S   : E  K  V  K  A  G  Y  I  S  Y  R  S  *  K  W  Q  G  Y  T  G  N  T  L  G  K  A  *  F  Y  Q  R  Q  V  P  R  D  E  V  E  A  V  *  E  L  R  E  P  V  S  L  S  *  R  S  *  K   : G  V  Q  G  S  R  K  R  T  Q  L  L  R  L  P  V  Q  Y  K  A  R  Q  I  N  Y  R  A  L  S   : V  E  E  S  L  V  V  D  I  K  T  *  C  V  S  H  A  K  L  L  C  D  A  L  V  L  T  S  W  K  G  G  R  S  A  *  C  C  *  A  I  D  A  H  Y   : E  I  P  W  I  S  V  S  N  T  S  P  S  A  D  Q  H  Y  G  C  *  R  W  F  A  G  C  W  G </second_frame>
            <third_frame>   A  I  H  C  F  S  L  I  F  N  *  F  S  Q  F  N  Y  L  K  N  S  G  D  F  F  P  A  *  G  G  Y  F  F  H  L  F  L  V  K  I  S  Q  L  P  I  L  S  R :   I  M  A  L  S  Q  N  Q  E  L  E  Y  M  V  D  E  Y  Y  D  T  T  D  F  D  D  S  T  F  G  G  E  S  P  R  S  T  D  P  D  I  S  A  D  S  E  F  E  D  D  F  E  V  :  R  K  S  K  L  D  T  S  A  I  E  A  R  N  G  K  D  I  Q  G  I  P  W  E  R  L  N  F  T  R  D  K  Y  R  E  T  R  L  K  Q  Y  K  N  Y  E  S  L  S  R  S  R  E  D  L  E  K  :  E  C  K  E  V  G  K  G  H  S  F  Y  D  F  Q  F  N  T  R  L  V  K  S  T  I  V  H  F  Q  :  L  R  N  L  L  W  S  T  S  K  H  D  V  Y  L  M  Q  N  Y  S  V  M  H  W  S  S  L  L  G  K  G  E  E  V  L  N  V  A  R  P  L  T  P  T  M  :  K  Y  P  G  S  A  S  Q  T  L  P  R  V  Q  I  S  T  M  A  V  R  D  G  L  L  A  A  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5295" stop="5237"/>
                    <exon start="4453" stop="4297"/>
                    <exon start="4204" stop="4037"/>
                    <exon start="3941" stop="3855"/>
                    <exon start="651" stop="517"/>
                    <exon start="437" stop="354"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGYFFHLFLVKISQLPILSRIMALSQNQELEYMVDEYYDTTDFDDSTFGGESPRSTDPDISADSEFEDDFEVRKSKLDTSAIEARNGKDIQGIPWERLNFTRDKYRETRLKQYKNYESLSRSREDLEKECKEVGKGHSFYDFQFNTRLVKSTIVHFQLRNLLWSTSKHDVYLMQNYSVMHWSSLLGKGEEVLNVARPLTPTMKYPGSASQTLPRVQISTMAVRDGLLAAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="12494" PGL_stop="11800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12494" e_stop="12481"/>
            <exon e_start="12365" e_stop="12277"/>
            <exon e_start="12173" e_stop="11800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.743" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12494" e_stop="12481" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12480" i_stop="12366" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="12365" e_stop="12277" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.743" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12276" i_stop="12174" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12173" e_stop="11800" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12494" stop="12481"/>
              <exon start="12365" stop="12277"/>
              <exon start="12173" stop="11800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTGATTCTTTG : ATTGGTAAACTTTTGACTCCGACCTCCAAAGATGTGAAGCACGTGGATCGGAAACTCAAATCATGTCTTGATCCGGGTTCACATGACAA : GAGTAAAAAAAGGAAGCATAGATCCAAAGATAGCTCACATGAGGCTACTGACTTATCTTGAACTGCTCTAACTCAAGTTTGTAGCTTCAAAGCATATCTTCTTTGCCCAGTGGAAATAGCGTTTCTCATTGCTGCTCATCAGTTCCCTAATATAGAACAAAAATTGAAGCCAGACTGTAGAAGTAGAGGCGGGTCGAGGATTTAAGATCACAAATTTCTCAAGACTTTTTTCTTAAATTTTGTACTATGAAATCAATTAGTAGTTTAAACTTCGAGTGTTAGTTAACCTGGAATTTACTGTTTGGAGATGTAAAAGCTCACTTTTTAGAAATGAGAATGTTGTTCTTAATGAGAACTTCAAAGTTTAATATGCA</gDNA_template>
            <first_frame> P  L  I  L  * :   L  V  N  F  *  L  R  P  P  K  M  *  S  T  W  I  G  N  S  N  H  V  L  I  R  V  H  M  T   : R  V  K  K  G  S  I  D  P  K  I  A  H  M  R  L  L  T  Y  L  E  L  L  *  L  K  F  V  A  S  K  H  I  F  F  A  Q  W  K  *  R  F  S  L  L  L  I  S  S  L  I  *  N  K  N  *  S  Q  T  V  E  V  E  A  G  R  G  F  K  I  T  N  F  S  R  L  F  S  *  I  L  Y  Y  E  I  N  *  *  F  K  L  R  V  L  V  N  L  E  F  T  V  W  R  C  K  S  S  L  F  R  N  E  N  V  V  L  N  E  N  F  K  V  *  Y  A </first_frame>
            <second_frame>  H  *  F  F   : D  W  *  T  F  D  S  D  L  Q  R  C  E  A  R  G  S  E  T  Q  I  M  S  *  S  G  F  T  *  Q  :  E  *  K  K  E  A  *  I  Q  R  *  L  T  *  G  Y  *  L  I  L  N  C  S  N  S  S  L  *  L  Q  S  I  S  S  L  P  S  G  N  S  V  S  H  C  C  S  S  V  P  *  Y  R  T  K  I  E  A  R  L  *  K  *  R  R  V  E  D  L  R  S  Q  I  S  Q  D  F  F  L  K  F  C  T  M  K  S  I  S  S  L  N  F  E  C  *  L  T  W  N  L  L  F  G  D  V  K  A  H  F  L  E  M  R  M  L  F  L  M  R  T  S  K  F  N  M   </second_frame>
            <third_frame>   I  D  S  L  :  I  G  K  L  L  T  P  T  S  K  D  V  K  H  V  D  R  K  L  K  S  C  L  D  P  G  S  H  D  K :   S  K  K  R  K  H  R  S  K  D  S  S  H  E  A  T  D  L  S  *  T  A  L  T  Q  V  C  S  F  K  A  Y  L  L  C  P  V  E  I  A  F  L  I  A  A  H  Q  F  P  N  I  E  Q  K  L  K  P  D  C  R  S  R  G  G  S  R  I  *  D  H  K  F  L  K  T  F  F  L  N  F  V  L  *  N  Q  L  V  V  *  T  S  S  V  S  *  P  G  I  Y  C  L  E  M  *  K  L  T  F  *  K  *  E  C  C  S  *  *  E  L  Q  S  L  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="17894" PGL_stop="13696"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17894" e_stop="17779"/>
            <exon e_start="17311" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15051"/>
            <exon e_start="14960" e_stop="14854"/>
            <exon e_start="14746" e_stop="14702"/>
            <exon e_start="13750" e_stop="13725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.860" e_score="0.879"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="0.910"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="0.980"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="0.949"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.907"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.911"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="17894" e_stop="17779" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.860">
            <gDNA_intron_boundary i_start="17778" i_stop="17312" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="17311" e_stop="17167" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15171" e_stop="15051" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.907">
            <gDNA_exon_boundary e_start="14960" e_stop="14854" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14853" i_stop="14747" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="14746" e_stop="14702" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="13750" e_stop="13725" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17894" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17859" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17801" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17801" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14854"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGAGCACTTCACTGTGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : ATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG : AGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGA : GAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAG : GGTTCACTTGATACTGCTAGGATTGA</gDNA_template>
            <first_frame> I  R  A  L  H  C  A  Y  *  I  L  P  L  Q  S  L  K  P  F  R  Y  I  N  P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   S  Y  R  D  E  T  Q  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I  L  N  N  E  M  L  V  F  Q  :  S  L  G  F  D  L  I  V  Y  S  P  Y  R  A  L  E  G  F  I  S  D  L  E  V  F  F  C  *  S  V  T  L  K  P  F  E :   N  S  V  E  L  K  M  K  T  S  L  W  L  *  R :   V  H  L  I  L  L  G  L  </first_frame>
            <second_frame>  S  E  H  F  T  V  L  I  K  F  F  H  Y  K  A  L  S  P  S  G  I  L  T  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : D  L  I  E  M  K  H  R  G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  S  T  M  R  C  W  F  S  R :   V  *  D  L  I  *  L  F  T  L  H  I  V  L  L  K  V  L  S  V  I  *  R  S  F  S  V  D  L  L  H  L  N  P  L   : R  I  L  W  S  *  R  *  R  P  A  C  G  S  E   : G  F  T  *  Y  C  *  D  * </second_frame>
            <third_frame>   Q  S  T  S  L  C  L  L  N  S  S  I  T  K  P  *  A  L  P  V  Y  *  P  S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  I  L  *  R  *  N  T  G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P  Q  Q  *  D  A  G  F  P   : E  S  R  I  *  S  N  C  L  L  S  I  S  C  S  *  R  F  Y  Q  *  F  R  G  L  F  L  L  I  C  Y  T  *  T  L  *  :  E  F  C  G  A  K  D  E  D  Q  L  V  A  L  K  :  G  S  L  D  T  A  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15051"/>
                    <exon start="14960" stop="14877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVILNNEMLVFQSLGFDLIVYSPYRALEGFISDLEVFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17894" e_stop="17779"/>
            <exon e_start="17311" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15051"/>
            <exon e_start="14960" e_stop="14892"/>
            <exon e_start="14746" e_stop="14702"/>
            <exon e_start="13750" e_stop="13696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.860" e_score="0.879"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="0.910"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="0.980"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="0.949"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="1.000" e_score="0.913"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.911"/>
          <exon-only e_score="0.873"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="17894" e_stop="17779" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.860">
            <gDNA_intron_boundary i_start="17778" i_stop="17312" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="17311" e_stop="17167" e_length="145"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15171" e_stop="15051" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.913">
            <gDNA_exon_boundary e_start="14960" e_stop="14892" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.863" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14891" i_stop="14747" i_length="145"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="14746" e_stop="14702" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951"/>
          </intron>
          <exon e_serial="10" e_score="0.873">
            <gDNA_exon_boundary e_start="13750" e_stop="13696" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17894" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17859" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17801" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17801" stop="17779"/>
              <exon start="17311" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14892"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCAGAGCACTTCACTGTGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : ATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG : AGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAG : GAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAG : GGTTCACTTGATACTGCTAGGATTGAAGCAGATAAGATTATGCGTTCTGATGGAC</gDNA_template>
            <first_frame> I  R  A  L  H  C  A  Y  *  I  L  P  L  Q  S  L  K  P  F  R  Y  I  N  P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   S  Y  R  D  E  T  Q  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I  L  N  N  E  M  L  V  F  Q  :  S  L  G  F  D  L  I  V  Y  S  P  Y  R  A  L  E  G  F  I  S  D  L  E  :  E  F  C  G  A  K  D  E  D  Q  L  V  A  L  K  :  G  S  L  D  T  A  R  I  E  A  D  K  I  M  R  S  D  G  </first_frame>
            <second_frame>  S  E  H  F  T  V  L  I  K  F  F  H  Y  K  A  L  S  P  S  G  I  L  T  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : D  L  I  E  M  K  H  R  G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  S  T  M  R  C  W  F  S  R :   V  *  D  L  I  *  L  F  T  L  H  I  V  L  L  K  V  L  S  V  I  *  R :   N  S  V  E  L  K  M  K  T  S  L  W  L  *  R :   V  H  L  I  L  L  G  L  K  Q  I  R  L  C  V  L  M  D </second_frame>
            <third_frame>   Q  S  T  S  L  C  L  L  N  S  S  I  T  K  P  *  A  L  P  V  Y  *  P  S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  I  L  *  R  *  N  T  G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P  Q  Q  *  D  A  G  F  P   : E  S  R  I  *  S  N  C  L  L  S  I  S  C  S  *  R  F  Y  Q  *  F  R   : G  I  L  W  S  *  R  *  R  P  A  C  G  S  E   : G  F  T  *  Y  C  *  D  *  S  R  *  D  Y  A  F  *  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15051"/>
                    <exon start="14960" stop="14892"/>
                    <exon start="14746" stop="14702"/>
                    <exon start="13750" stop="13697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVILNNEMLVFQSLGFDLIVYSPYRALEGFISDLEEFCGAKDEDQLVALKGSLDTARIEADKIMRSDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="17825" e_stop="17779"/>
            <exon e_start="17302" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15051"/>
            <exon e_start="14960" e_stop="14892"/>
            <exon e_start="14746" e_stop="14702"/>
            <exon e_start="13750" e_stop="13696"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.862" e_score="0.935"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="0.912"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="0.980"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="0.949"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="1.000" e_score="0.957"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.911"/>
          <exon-only e_score="0.873"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="17825" e_stop="17779" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.862">
            <gDNA_intron_boundary i_start="17778" i_stop="17303" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.912">
            <gDNA_exon_boundary e_start="17302" e_stop="17167" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15171" e_stop="15051" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="14960" e_stop="14892" e_length="69"/>
          </exon>
          <intron i_serial="8" don_prob="0.863" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14891" i_stop="14747" i_length="145"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="14746" e_stop="14702" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951"/>
          </intron>
          <exon e_serial="10" e_score="0.873">
            <gDNA_exon_boundary e_start="13750" e_stop="13696" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17825" stop="17779"/>
              <exon start="17302" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14892"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17809" stop="17779"/>
              <exon start="17302" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14892"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : AGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG : AGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAG : GAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAG : GGTTCACTTGATACTGCTAGGATTGAAGCAGATAAGATTATGCGTTCTGATGGAC</gDNA_template>
            <first_frame> P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   D  E  T  Q  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I  L  N  N  E  M  L  V  F  Q  :  S  L  G  F  D  L  I  V  Y  S  P  Y  R  A  L  E  G  F  I  S  D  L  E  :  E  F  C  G  A  K  D  E  D  Q  L  V  A  L  K  :  G  S  L  D  T  A  R  I  E  A  D  K  I  M  R  S  D  G  </first_frame>
            <second_frame>  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : E  M  K  H  R  G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  S  T  M  R  C  W  F  S  R :   V  *  D  L  I  *  L  F  T  L  H  I  V  L  L  K  V  L  S  V  I  *  R :   N  S  V  E  L  K  M  K  T  S  L  W  L  *  R :   V  H  L  I  L  L  G  L  K  Q  I  R  L  C  V  L  M  D </second_frame>
            <third_frame>   S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  R  *  N  T  G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P  Q  Q  *  D  A  G  F  P   : E  S  R  I  *  S  N  C  L  L  S  I  S  C  S  *  R  F  Y  Q  *  F  R   : G  I  L  W  S  *  R  *  R  P  A  C  G  S  E   : G  F  T  *  Y  C  *  D  *  S  R  *  D  Y  A  F  *  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15051"/>
                    <exon start="14960" stop="14892"/>
                    <exon start="14746" stop="14702"/>
                    <exon start="13750" stop="13697"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVILNNEMLVFQSLGFDLIVYSPYRALEGFISDLEEFCGAKDEDQLVALKGSLDTARIEADKIMRSDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="17877" e_stop="17779"/>
            <exon e_start="17289" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15051"/>
            <exon e_start="14960" e_stop="14854"/>
            <exon e_start="14746" e_stop="14702"/>
            <exon e_start="13750" e_stop="13725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.969"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.907"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.911"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17877" e_stop="17779" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17778" i_stop="17290" i_length="489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17289" e_stop="17167" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="15171" e_stop="15051" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.907">
            <gDNA_exon_boundary e_start="14960" e_stop="14854" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14853" i_stop="14747" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="14746" e_stop="14702" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="13750" e_stop="13725" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17877" stop="17779"/>
              <exon start="17289" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17856" stop="17779"/>
              <exon start="17289" stop="17167"/>
              <exon start="17060" stop="17010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14854"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : GGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG : AGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGA : GAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAG : GGTTCACTTGATACTGCTAGGATTGA</gDNA_template>
            <first_frame> C  L  L  N  S  S  I  T  K  P  *  A  L  P  V  Y  *  P  S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I  L  N  N  E  M  L  V  F  Q  :  S  L  G  F  D  L  I  V  Y  S  P  Y  R  A  L  E  G  F  I  S  D  L  E  V  F  F  C  *  S  V  T  L  K  P  F  E :   N  S  V  E  L  K  M  K  T  S  L  W  L  *  R :   V  H  L  I  L  L  G  L  </first_frame>
            <second_frame>  A  Y  *  I  L  P  L  Q  S  L  K  P  F  R  Y  I  N  P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  S  T  M  R  C  W  F  S  R :   V  *  D  L  I  *  L  F  T  L  H  I  V  L  L  K  V  L  S  V  I  *  R  S  F  S  V  D  L  L  H  L  N  P  L   : R  I  L  W  S  *  R  *  R  P  A  C  G  S  E   : G  F  T  *  Y  C  *  D  * </second_frame>
            <third_frame>   L  I  K  F  F  H  Y  K  A  L  S  P  S  G  I  L  T  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P  Q  Q  *  D  A  G  F  P   : E  S  R  I  *  S  N  C  L  L  S  I  S  C  S  *  R  F  Y  Q  *  F  R  G  L  F  L  L  I  C  Y  T  *  T  L  *  :  E  F  C  G  A  K  D  E  D  Q  L  V  A  L  K  :  G  S  L  D  T  A  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15051"/>
                    <exon start="14960" stop="14877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVILNNEMLVFQSLGFDLIVYSPYRALEGFISDLEVFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="17855" e_stop="17779"/>
            <exon e_start="17336" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15051"/>
            <exon e_start="14960" e_stop="14854"/>
            <exon e_start="14746" e_stop="14702"/>
            <exon e_start="13750" e_stop="13725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.161" e_score="0.974"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="0.900"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="0.980"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="0.949"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="0.982"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.952"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.907"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.911"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="17855" e_stop="17779" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.161">
            <gDNA_intron_boundary i_start="17778" i_stop="17337" i_length="442"/>
          </intron>
          <exon e_serial="2" e_score="0.900">
            <gDNA_exon_boundary e_start="17336" e_stop="17167" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="0.952">
            <gDNA_exon_boundary e_start="15171" e_stop="15051" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.907">
            <gDNA_exon_boundary e_start="14960" e_stop="14854" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14853" i_stop="14747" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="14746" e_stop="14702" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="13750" e_stop="13725" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17855" stop="17779"/>
              <exon start="17336" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17265" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14854"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17253" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : GAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG : AGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGA : GAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAG : GGTTCACTTGATACTGCTAGGATTGA</gDNA_template>
            <first_frame> Q  S  L  K  P  F  R  Y  I  N  P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   S  F  Y  T  L  F  L  K  I  L  *  R  *  N  T  G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P  Q  Q  *  D  A  G  F  P   : E  S  R  I  *  S  N  C  L  L  S  I  S  C  S  *  R  F  Y  Q  *  F  R  G  L  F  L  L  I  C  Y  T  *  T  L  *  :  E  F  C  G  A  K  D  E  D  Q  L  V  A  L  K  :  G  S  L  D  T  A  R  I   </first_frame>
            <second_frame>  K  A  L  S  P  S  G  I  L  T  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : G  V  F  I  H  Y  F  *  R  S  Y  R  D  E  T  Q  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I  L  N  N  E  M  L  V  F  Q  :  S  L  G  F  D  L  I  V  Y  S  P  Y  R  A  L  E  G  F  I  S  D  L  E  V  F  F  C  *  S  V  T  L  K  P  F  E :   N  S  V  E  L  K  M  K  T  S  L  W  L  *  R :   V  H  L  I  L  L  G  L  </second_frame>
            <third_frame>   K  P  *  A  L  P  V  Y  *  P  S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  E  F  L  Y  I  I  F  E  D  L  I  E  M  K  H  R  G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  S  T  M  R  C  W  F  S  R :   V  *  D  L  I  *  L  F  T  L  H  I  V  L  L  K  V  L  S  V  I  *  R  S  F  S  V  D  L  L  H  L  N  P  L   : R  I  L  W  S  *  R  *  R  P  A  C  G  S  E   : G  F  T  *  Y  C  *  D  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15051"/>
                    <exon start="14960" stop="14877"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVILNNEMLVFQSLGFDLIVYSPYRALEGFISDLEVFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28425" PGL_stop="29735"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28425" e_stop="28954"/>
            <exon e_start="29553" e_stop="29735"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.955"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="28425" e_stop="28954" e_length="530"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28955" i_stop="29552" i_length="598"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="29553" e_stop="29735" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28425" stop="28954"/>
              <exon start="29553" stop="29735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28426" stop="28839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28613" stop="28954"/>
              <exon start="29553" stop="29713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205527" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTATATATTGTTACATTCAATTTTATTCATAGACAAAAAAAAAAGTACATTACATTTATTTACATTATATATATGTAAACTTGTTTTTTACAGAAGAAACACCAAAAAAAAAAAAAAATGGAACAGCAAATAACTAATAAATTCACCGTCATGTTTATCTTCGTCATTTTAGTGCTTCTTTTTCGCCGTACTGAATCAACTAAACCTCCATTTTCATGTGACTCTTCAAACCCAAATACAAGTTCATATCCCTTCTGCAACGCTGCGTTACCAATCCCACAAAGGGTAAACGACCTCGTTTCGCGTCTCACTGTAGATGAGAAAATCTTACAGCTCGTTAATGGAGCGCCGGAAATACCTCGACTCGGTATCTCCGCTTATGAATGGTGGTCGGAAGGGTTACACGGCATTTCTAGGCATGGAAAGGGTACGCTTTTTAATGGAACCATTAAGGCGGCAACTCAATTCCCTCAGATCATTCTTACTGCTTCTTCTTTTGATGAAAATCTCTGGTATCGTATAGCTCAG : GCAATTGGAAGAGAGGCAAGAGCAGTGTACAATGCAGGTCAGCTAAAGGGAATAACATTATGGGCACCAAATATAAATATACTCAGGGACCCAAGGTGGGGAAGAGGCCAAGAGACACCAGGGGAAGACCCTATGATGGTGGGAAAATATGGAGTGGCTTATGTAAGAGGACTTCAAGGGGAT</gDNA_template>
            <first_frame> L  Y  I  L  L  H  S  I  L  F  I  D  K  K  K  S  T  L  H  L  F  T  L  Y  I  C  K  L  V  F  Y  R  R  N  T  K  K  K  K  K  W  N  S  K  *  L  I  N  S  P  S  C  L  S  S  S  F  *  C  F  F  F  A  V  L  N  Q  L  N  L  H  F  H  V  T  L  Q  T  Q  I  Q  V  H  I  P  S  A  T  L  R  Y  Q  S  H  K  G  *  T  T  S  F  R  V  S  L  *  M  R  K  S  Y  S  S  L  M  E  R  R  K  Y  L  D  S  V  S  P  L  M  N  G  G  R  K  G  Y  T  A  F  L  G  M  E  R  V  R  F  L  M  E  P  L  R  R  Q  L  N  S  L  R  S  F  L  L  L  L  L  L  M  K  I  S  G  I  V  *  L  R :   Q  L  E  E  R  Q  E  Q  C  T  M  Q  V  S  *  R  E  *  H  Y  G  H  Q  I  *  I  Y  S  G  T  Q  G  G  E  E  A  K  R  H  Q  G  K  T  L  *  W  W  E  N  M  E  W  L  M  *  E  D  F  K  G   </first_frame>
            <second_frame>  F  I  Y  C  Y  I  Q  F  Y  S  *  T  K  K  K  V  H  Y  I  Y  L  H  Y  I  Y  V  N  L  F  F  T  E  E  T  P  K  K  K  K  N  G  T  A  N  N  *  *  I  H  R  H  V  Y  L  R  H  F  S  A  S  F  S  P  Y  *  I  N  *  T  S  I  F  M  *  L  F  K  P  K  Y  K  F  I  S  L  L  Q  R  C  V  T  N  P  T  K  G  K  R  P  R  F  A  S  H  C  R  *  E  N  L  T  A  R  *  W  S  A  G  N  T  S  T  R  Y  L  R  L  *  M  V  V  G  R  V  T  R  H  F  *  A  W  K  G  Y  A  F  *  W  N  H  *  G  G  N  S  I  P  S  D  H  S  Y  C  F  F  F  *  *  K  S  L  V  S  Y  S  S   : G  N  W  K  R  G  K  S  S  V  Q  C  R  S  A  K  G  N  N  I  M  G  T  K  Y  K  Y  T  Q  G  P  K  V  G  K  R  P  R  D  T  R  G  R  P  Y  D  G  G  K  I  W  S  G  L  C  K  R  T  S  R  G  </second_frame>
            <third_frame>   L  Y  I  V  T  F  N  F  I  H  R  Q  K  K  K  Y  I  T  F  I  Y  I  I  Y  M  *  T  C  F  L  Q  K  K  H  Q  K  K  K  K  M  E  Q  Q  I  T  N  K  F  T  V  M  F  I  F  V  I  L  V  L  L  F  R  R  T  E  S  T  K  P  P  F  S  C  D  S  S  N  P  N  T  S  S  Y  P  F  C  N  A  A  L  P  I  P  Q  R  V  N  D  L  V  S  R  L  T  V  D  E  K  I  L  Q  L  V  N  G  A  P  E  I  P  R  L  G  I  S  A  Y  E  W  W  S  E  G  L  H  G  I  S  R  H  G  K  G  T  L  F  N  G  T  I  K  A  A  T  Q  F  P  Q  I  I  L  T  A  S  S  F  D  E  N  L  W  Y  R  I  A  Q  :  A  I  G  R  E  A  R  A  V  Y  N  A  G  Q  L  K  G  I  T  L  W  A  P  N  I  N  I  L  R  D  P  R  W  G  R  G  Q  E  T  P  G  E  D  P  M  M  V  G  K  Y  G  V  A  Y  V  R  G  L  Q  G  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28505" stop="28954"/>
                    <exon start="29553" stop="29735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCFLQKKHQKKKKMEQQITNKFTVMFIFVILVLLFRRTESTKPPFSCDSSNPNTSSYPFCNAALPIPQRVNDLVSRLTVDEKILQLVNGAPEIPRLGISAYEWWSEGLHGISRHGKGTLFNGTIKAATQFPQIILTASSFDENLWYRIAQAIGREARAVYNAGQLKGITLWAPNINILRDPRWGRGQETPGEDPMMVGKYGVAYVRGLQGD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="38500" PGL_stop="32277"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38500" e_stop="38467"/>
            <exon e_start="32886" e_stop="32277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.618"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.618">
            <gDNA_exon_boundary e_start="38500" e_stop="38467" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38466" i_stop="32887" i_length="5580"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="32886" e_stop="32277" e_length="610"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38500" stop="38467"/>
              <exon start="32886" stop="32277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547033" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTGGACATGGCCACGCCCACTTTTTTGTCTTG : GATGATACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTGATACAGCAATGTTCAGAACAGAACCTTTTTCAGTTGACTGGTTGATCTTTGGGTTCTTGAAAAGCAGTTGGTTTTTGCTCA</gDNA_template>
            <first_frame> W  W  T  W  P  R  P  L  F  C  L   : G  *  Y  L  R  H  D  I  Y  *  *  N  E  N  K  L  F  I  N  S  L  V  I  F  *  T  I  I  C  H  K  P  R  V  E  L  V  S  F  C  K  Y  *  Q  I  *  L  V  T  F  H  N  *  I  L  L  A  I  I  L  I  L  T  K  K  L  R  S  G  R  S  *  R  Y  R  N  R  I  L  L  I  S  Q  K  K  E  M  F  P  F  I  D  N  *  C  T  I  S  I  S  P  S  E  V  L  T  R  L  H  I  K  R  N  L  C  I  C  P  C  F  Q  I  H  T  L  E  S  Y  Q  C  L  F  W  N  L  I  H  C  A  R  V  L  Q  K  Q  Q  H  G  V  L  T  S  H  F  S  L  V  F  H  R  N  F  N  C  Y  H  R  A  V  T  Y  F  W  S  N  V  *  Y  S  N  V  Q  N  R  T  F  F  S  *  L  V  D  L  W  V  L  E  K  Q  L  V  F  A   </first_frame>
            <second_frame>  G  G  H  G  H  A  H  F  F  V  L  :  D  D  T  *  D  M  I  F  I  D  K  M  K  T  N  Y  S  S  I  H  L  S  Y  F  K  L  L  F  V  I  N  L  E  *  N  *  F  L  S  A  N  I  S  R  F  N  *  *  P  S  I  I  K  F  Y  *  L  L  S  *  Y  *  L  K  S  L  D  L  G  D  H  R  D  T  G  I  G  Y  S  *  S  P  K  R  R  K  C  F  P  S  S  I  T  N  V  P  S  R  L  A  L  V  K  C  S  Q  G  F  T  S  N  V  T  C  V  F  A  P  A  S  K  F  T  L  L  N  P  I  N  V  F  F  G  T  S  S  T  V  L  E  C  F  R  N  N  N  T  G  C  L  P  A  I  S  P  W  F  F  T  A  T  L  T  V  I  I  A  L  L  H  T  S  G  P  T  S  D  T  A  M  F  R  T  E  P  F  S  V  D  W  L  I  F  G  F  L  K  S  S  W  F  L  L  </second_frame>
            <third_frame>   V  D  M  A  T  P  T  F  L  S  W :   M  I  L  K  T  *  Y  L  L  I  K  *  K  Q  I  I  H  Q  F  T  C  H  I  L  N  Y  Y  L  S  *  T  *  S  R  T  S  F  F  L  Q  I  L  A  D  L  T  S  N  L  P  *  L  N  F  T  S  Y  Y  L  N  T  N  *  K  A  *  I  W  E  I  I  E  I  Q  E  *  D  T  P  D  L  P  K  E  G  N  V  S  L  H  R  *  L  M  Y  H  L  D  *  P  *  *  S  A  H  K  A  S  H  Q  T  *  L  V  Y  L  P  L  L  P  N  S  H  S  *  I  L  S  M  S  F  L  E  P  H  P  L  C  *  S  A  S  E  T  T  T  R  G  A  Y  Q  P  F  L  P  G  F  S  P  Q  L  *  L  L  S  S  R  C  Y  I  L  L  V  Q  R  L  I  Q  Q  C  S  E  Q  N  L  F  Q  L  T  G  *  S  L  G  S  *  K  A  V  G  F  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32646" stop="32278"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKRRKCFPSSITNVPSRLALVKCSQGFTSNVTCVFAPASKFTLLNPINVFFGTSSTVLECFRNNNTGCLPAISPWFFTATLTVIIALLHTSGPTSDTAMFRTEPFSVDWLIFGFLKSSWFLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32911" e_stop="32358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="32911" e_stop="32358" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32911" stop="32358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTAAAGTAGAATTTATGCAAAAGGATGATACTTAAGACATGATATTTATTGATAAAATGAAAACAAATTATTCATCAATTCACTTGTCATATTTTAAACTATTATTTGTCATAAACCTAGAGTAGAACTAGTTTCTTTCTGCAAATATTAGCAGATTTAACTAGTAACCTTCCATAATTAAATTTTACTAGCTATTATCTTAATACTAACTAAAAAGCTTAGATCTGGGAGATCATAGAGATACAGGAATAGGATACTCCTGATCTCCCAAAAGAAGGAAATGTTTCCCTTCATCGATAACTAATGTACCATCTCGATTAGCCCTAGTGAAGTGCTCACAAGGCTTCACATCAAACGTAACTTGTGTATTTGCCCCTGCTTCCAAATTCACACTCTTGAATCCTATCAATGTCTTTTTTGGAACCTCATCCACTGTGCTAGAGTGCTTCAGAAACAACAACACGGGGTGCTTACCAGCCATTTCTCCCTGGTTTTTCACCGCAACTTTAACTGTTATCATCGCGCTGTTACATACTTCTGGTCCAACGTCTG</gDNA_template>
            <first_frame> N  *  S  R  I  Y  A  K  G  *  Y  L  R  H  D  I  Y  *  *  N  E  N  K  L  F  I  N  S  L  V  I  F  *  T  I  I  C  H  K  P  R  V  E  L  V  S  F  C  K  Y  *  Q  I  *  L  V  T  F  H  N  *  I  L  L  A  I  I  L  I  L  T  K  K  L  R  S  G  R  S  *  R  Y  R  N  R  I  L  L  I  S  Q  K  K  E  M  F  P  F  I  D  N  *  C  T  I  S  I  S  P  S  E  V  L  T  R  L  H  I  K  R  N  L  C  I  C  P  C  F  Q  I  H  T  L  E  S  Y  Q  C  L  F  W  N  L  I  H  C  A  R  V  L  Q  K  Q  Q  H  G  V  L  T  S  H  F  S  L  V  F  H  R  N  F  N  C  Y  H  R  A  V  T  Y  F  W  S  N  V   </first_frame>
            <second_frame>  I  K  V  E  F  M  Q  K  D  D  T  *  D  M  I  F  I  D  K  M  K  T  N  Y  S  S  I  H  L  S  Y  F  K  L  L  F  V  I  N  L  E  *  N  *  F  L  S  A  N  I  S  R  F  N  *  *  P  S  I  I  K  F  Y  *  L  L  S  *  Y  *  L  K  S  L  D  L  G  D  H  R  D  T  G  I  G  Y  S  *  S  P  K  R  R  K  C  F  P  S  S  I  T  N  V  P  S  R  L  A  L  V  K  C  S  Q  G  F  T  S  N  V  T  C  V  F  A  P  A  S  K  F  T  L  L  N  P  I  N  V  F  F  G  T  S  S  T  V  L  E  C  F  R  N  N  N  T  G  C  L  P  A  I  S  P  W  F  F  T  A  T  L  T  V  I  I  A  L  L  H  T  S  G  P  T  S  </second_frame>
            <third_frame>   L  K  *  N  L  C  K  R  M  I  L  K  T  *  Y  L  L  I  K  *  K  Q  I  I  H  Q  F  T  C  H  I  L  N  Y  Y  L  S  *  T  *  S  R  T  S  F  F  L  Q  I  L  A  D  L  T  S  N  L  P  *  L  N  F  T  S  Y  Y  L  N  T  N  *  K  A  *  I  W  E  I  I  E  I  Q  E  *  D  T  P  D  L  P  K  E  G  N  V  S  L  H  R  *  L  M  Y  H  L  D  *  P  *  *  S  A  H  K  A  S  H  Q  T  *  L  V  Y  L  P  L  L  P  N  S  H  S  *  I  L  S  M  S  F  L  E  P  H  P  L  C  *  S  A  S  E  T  T  T  R  G  A  Y  Q  P  F  L  P  G  F  S  P  Q  L  *  L  L  S  S  R  C  Y  I  L  L  V  Q  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32646" stop="32359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPKRRKCFPSSITNVPSRLALVKCSQGFTSNVTCVFAPASKFTLLNPINVFFGTSSTVLECFRNNNTGCLPAISPWFFTATLTVIIALLHTSGPTS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32605" stop="32360"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTISISPSEVLTRLHIKRNLCICPCFQIHTLESYQCLFWNLIHCARVLQKQQHGVLTSHFSLVFHRNFNCYHRAVTYFWSNV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35137" PGL_stop="36748"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35137" e_stop="35562"/>
            <exon e_start="36481" e_stop="36748"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.962"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="35137" e_stop="35562" e_length="426"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35563" i_stop="36480" i_length="918"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="36481" e_stop="36748" e_length="268"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35137" stop="35562"/>
              <exon start="36481" stop="36514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35144" stop="35562"/>
              <exon start="36481" stop="36748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35227" stop="35562"/>
              <exon start="36481" stop="36622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35229" stop="35562"/>
              <exon start="36481" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272952" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCCCCCATTTTTCACTTCACAATGAAACTTCACATCTCAACTCTCATTACTACTATTCTCATATCTCTATCATTAGTTTCGATTGTTCAATCAACTCAGCCACCTTTCTCTTGCGATTCGTCGAATCCGCAAACCAAATCGTTAAAATTTTGCCAAACAGGACTTCCAATTAGTGTACGTGTACTAGACCTTGTTTCTCGACTCACACTCGATGAGAAAATATCTCAACTAGTTAACTCAGCTCCTGCAATACCCAGACTCGGTATTCCGGCGTATGAGTGGTGGTCGGAATCATTGCACGGCGTTGGTTCTGCCGGAAAAGGTATTTTCTTCAATGGGAGTATTGCCGGAGCCACCAGTTTTCCCCAAGTTATTCTCACTGCTGCTACTTTTGATGAAAATCTATGGTACCGCATTGGTCAG : GTGATTGGAGTAGAGGCCAGGGGAGTATACAATGCAGGTCAAGCAATCGGTATGACATTTTGGGCACCAAATATAAATATATTTAGGGATCCAAGATGGGGAAGAGGTCAAGAGACACCAGGGGAGGACCCAATAATGACTGGCAAATATGCAATTAGGTATGTTAGAGGTGTACAAGGTGACAGTTTTAATGGTGGACAGCTTAAAAAAGGTCACCTTCAAGCTTCTGCTTGCTGCAAACATTTCACTGCTTATGATTTGGATCAAT</gDNA_template>
            <first_frame> F  S  P  I  F  H  F  T  M  K  L  H  I  S  T  L  I  T  T  I  L  I  S  L  S  L  V  S  I  V  Q  S  T  Q  P  P  F  S  C  D  S  S  N  P  Q  T  K  S  L  K  F  C  Q  T  G  L  P  I  S  V  R  V  L  D  L  V  S  R  L  T  L  D  E  K  I  S  Q  L  V  N  S  A  P  A  I  P  R  L  G  I  P  A  Y  E  W  W  S  E  S  L  H  G  V  G  S  A  G  K  G  I  F  F  N  G  S  I  A  G  A  T  S  F  P  Q  V  I  L  T  A  A  T  F  D  E  N  L  W  Y  R  I  G  Q  :  V  I  G  V  E  A  R  G  V  Y  N  A  G  Q  A  I  G  M  T  F  W  A  P  N  I  N  I  F  R  D  P  R  W  G  R  G  Q  E  T  P  G  E  D  P  I  M  T  G  K  Y  A  I  R  Y  V  R  G  V  Q  G  D  S  F  N  G  G  Q  L  K  K  G  H  L  Q  A  S  A  C  C  K  H  F  T  A  Y  D  L  D  Q  </first_frame>
            <second_frame>  F  P  P  F  F  T  S  Q  *  N  F  T  S  Q  L  S  L  L  L  F  S  Y  L  Y  H  *  F  R  L  F  N  Q  L  S  H  L  S  L  A  I  R  R  I  R  K  P  N  R  *  N  F  A  K  Q  D  F  Q  L  V  Y  V  Y  *  T  L  F  L  D  S  H  S  M  R  K  Y  L  N  *  L  T  Q  L  L  Q  Y  P  D  S  V  F  R  R  M  S  G  G  R  N  H  C  T  A  L  V  L  P  E  K  V  F  S  S  M  G  V  L  P  E  P  P  V  F  P  K  L  F  S  L  L  L  L  L  M  K  I  Y  G  T  A  L  V  R :   *  L  E  *  R  P  G  E  Y  T  M  Q  V  K  Q  S  V  *  H  F  G  H  Q  I  *  I  Y  L  G  I  Q  D  G  E  E  V  K  R  H  Q  G  R  T  Q  *  *  L  A  N  M  Q  L  G  M  L  E  V  Y  K  V  T  V  L  M  V  D  S  L  K  K  V  T  F  K  L  L  L  A  A  N  I  S  L  L  M  I  W  I  N </second_frame>
            <third_frame>   F  P  H  F  S  L  H  N  E  T  S  H  L  N  S  H  Y  Y  Y  S  H  I  S  I  I  S  F  D  C  S  I  N  S  A  T  F  L  L  R  F  V  E  S  A  N  Q  I  V  K  I  L  P  N  R  T  S  N  *  C  T  C  T  R  P  C  F  S  T  H  T  R  *  E  N  I  S  T  S  *  L  S  S  C  N  T  Q  T  R  Y  S  G  V  *  V  V  V  G  I  I  A  R  R  W  F  C  R  K  R  Y  F  L  Q  W  E  Y  C  R  S  H  Q  F  S  P  S  Y  S  H  C  C  Y  F  *  *  K  S  M  V  P  H  W  S   : G  D  W  S  R  G  Q  G  S  I  Q  C  R  S  S  N  R  Y  D  I  L  G  T  K  Y  K  Y  I  *  G  S  K  M  G  K  R  S  R  D  T  R  G  G  P  N  N  D  W  Q  I  C  N  *  V  C  *  R  C  T  R  *  Q  F  *  W  W  T  A  *  K  R  S  P  S  S  F  C  L  L  Q  T  F  H  C  L  *  F  G  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35137" stop="35562"/>
                    <exon start="36481" stop="36747"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSPIFHFTMKLHISTLITTILISLSLVSIVQSTQPPFSCDSSNPQTKSLKFCQTGLPISVRVLDLVSRLTLDEKISQLVNSAPAIPRLGIPAYEWWSESLHGVGSAGKGIFFNGSIAGATSFPQVILTAATFDENLWYRIGQVIGVEARGVYNAGQAIGMTFWAPNINIFRDPRWGRGQETPGEDPIMTGKYAIRYVRGVQGDSFNGGQLKKGHLQASACCKHFTAYDLDQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="38846" PGL_stop="41575"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38846" e_stop="38973"/>
            <exon e_start="39086" e_stop="39183"/>
            <exon e_start="39831" e_stop="40595"/>
            <exon e_start="40682" e_stop="41575"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.996" e_score="0.992"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="0.990"/>
          <exon-intron don_prob="0.964" acc_prob="0.895" e_score="0.984"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="38846" e_stop="38973" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.996">
            <gDNA_intron_boundary i_start="38974" i_stop="39085" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="39086" e_stop="39183" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="39184" i_stop="39830" i_length="647"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="39831" e_stop="40595" e_length="765"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.895">
            <gDNA_intron_boundary i_start="40596" i_stop="40681" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="40682" e_stop="41575" e_length="894"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38846" stop="38973"/>
              <exon start="39086" stop="39183"/>
              <exon start="39831" stop="40178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40014" stop="40437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40025" stop="40524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40167" stop="40595"/>
              <exon start="40682" stop="41052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40186" stop="40595"/>
              <exon start="40682" stop="40729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40446" stop="40595"/>
              <exon start="40682" stop="41139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40478" stop="40595"/>
              <exon start="40682" stop="41402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40908" stop="41489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41044" stop="41575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324028" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGATTGTATACAGAAAGCACAAGCCAGTGGAATTATGTGCTCTTACAACAGTGTTAATGGAATCCCAAGTTGTGCTAATTATAATCTTTTAACTAAAACAGCTCGTCAACAATGGGGTTTTCATGG : GTACATTACGTCCGATTGTGACGCAGTTCAAGTCATGCATGATAACCACAGGTATGGAAATACACCAGAAGATTCAACAGCATTTGCACTTAAAGCTG : GCATGGATATAGACTGTGGGGATTACTTGAAGAAATACACAAAATCAGCAGTAATGAAGAAAAAAGTATCACAAGTTCATATAGACAGGGCTCTTCACAATCTTTTTTCCATAAGAATGAGGTTAGGATTATTCAATGGGGATCCCAGAAAACAGCTCTATGGAAACATTAGTCCTAGCCAAGTTTGTGCTCCACAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTTGTGGGCTGGCTATCCTGGTGAAGCTGGAGGAATTGCTTTAGCTGAAATCATATTTGGTGAACATAATCCTG : GGGGTAAATTACCTGTTACTTGGTATCCTCAAGCCTTTGTCAAAATACCAATGACAGATATGAGGATGAGACCTGATCCTAAAACAGGTTACCCTGGAAGAACATATCGATTCTACAAAGGTCCCAAAGTTTACGAGTTTGGATATGGTCTTAGCTACACTACTTATTCCTATGGATTCCACTCTGCCACTCCAAACACAATCCAGTTAAATCAATTATTATCTGTAAAGACAGTTGAAAATTCAGACTCAATCCGTTACACGTTTGTGGATGAAATAGGAAGTGACAACTGTGAGAAGGCGAAATTCTCAGCTCATGTTAGTGTTGAAAACTCAGGGGAAATGGATGGTAAGCATCCAGTACTACTTTTTGTGAAACAGGACAAAGCGCGAAATGGAAGTCCTATCAAACAGTTAGTTGGATTCCAAAGTGTAAGCTTGAAGGCAGGGGAAAATTCACAACTTGTGTTTGAGATCAGTCCTTGTGAACATCTTAGCAGTGCTAATGAAGATGGATTAATGATGATAGAAGAAGGATCGCGTTACCTTGTCGTTGGAGATGCAGAGCATCCTATCAACATCATGATATGAAACCAAAAAAAAAAATGGTTACAAAAAGTTATTTTTACTATTTTGAATTTCACAAATCCTCTCTAAATACCTATAAGAGTGGCAATGTTGCAGCAGCAACAGCTAAAGTATAGATATCAAGATGAATTTGGGCTATTATCTCTTTCTCTTGCTAGATATCTATTTTATTTTCTCTTCTTTTTTTTTCAAGAACTCGAAAAGTTTTATAAGAAATTCAAGTACTACTAGCATTAAGATGTTAAGGATGCTCACTAGTGTATCTCATTATGAATTATAGAACAAAGACGTTAACATAGACGGGGAG</gDNA_template>
            <first_frame> Q  D  C  I  Q  K  A  Q  A  S  G  I  M  C  S  Y  N  S  V  N  G  I  P  S  C  A  N  Y  N  L  L  T  K  T  A  R  Q  Q  W  G  F  H  G :   Y  I  T  S  D  C  D  A  V  Q  V  M  H  D  N  H  R  Y  G  N  T  P  E  D  S  T  A  F  A  L  K  A   : G  M  D  I  D  C  G  D  Y  L  K  K  Y  T  K  S  A  V  M  K  K  K  V  S  Q  V  H  I  D  R  A  L  H  N  L  F  S  I  R  M  R  L  G  L  F  N  G  D  P  R  K  Q  L  Y  G  N  I  S  P  S  Q  V  C  A  P  Q  H  Q  Q  L  A  L  E  A  A  R  N  G  I  V  L  L  K  N  T  G  K  L  L  P  L  S  K  A  K  T  N  S  L  A  V  I  G  H  N  A  N  N  A  Y  I  L  R  G  N  Y  D  G  P  P  C  K  Y  I  E  I  L  K  A  L  V  G  Y  A  K  S  V  Q  Y  Q  Q  G  C  N  A  A  N  C  T  S  A  N  I  D  Q  A  V  N  I  A  R  N  A  D  Y  V  V  L  I  M  G  L  D  Q  T  Q  E  R  E  Q  F  D  R  D  D  L  V  L  P  G  Q  Q  E  N  L  I  N  S  V  A  K  A  A  K  K  P  V  I  L  V  I  L  S  G  G  P  V  D  I  S  F  A  K  Y  N  P  K  I  G  S  I  L  W  A  G  Y  P  G  E  A  G  G  I  A  L  A  E  I  I  F  G  E  H  N  P   : G  G  K  L  P  V  T  W  Y  P  Q  A  F  V  K  I  P  M  T  D  M  R  M  R  P  D  P  K  T  G  Y  P  G  R  T  Y  R  F  Y  K  G  P  K  V  Y  E  F  G  Y  G  L  S  Y  T  T  Y  S  Y  G  F  H  S  A  T  P  N  T  I  Q  L  N  Q  L  L  S  V  K  T  V  E  N  S  D  S  I  R  Y  T  F  V  D  E  I  G  S  D  N  C  E  K  A  K  F  S  A  H  V  S  V  E  N  S  G  E  M  D  G  K  H  P  V  L  L  F  V  K  Q  D  K  A  R  N  G  S  P  I  K  Q  L  V  G  F  Q  S  V  S  L  K  A  G  E  N  S  Q  L  V  F  E  I  S  P  C  E  H  L  S  S  A  N  E  D  G  L  M  M  I  E  E  G  S  R  Y  L  V  V  G  D  A  E  H  P  I  N  I  M  I  *  N  Q  K  K  K  W  L  Q  K  V  I  F  T  I  L  N  F  T  N  P  L  *  I  P  I  R  V  A  M  L  Q  Q  Q  Q  L  K  Y  R  Y  Q  D  E  F  G  L  L  S  L  S  L  A  R  Y  L  F  Y  F  L  F  F  F  F  Q  E  L  E  K  F  Y  K  K  F  K  Y  Y  *  H  *  D  V  K  D  A  H  *  C  I  S  L  *  I  I  E  Q  R  R  *  H  R  R  G  </first_frame>
            <second_frame>  K  I  V  Y  R  K  H  K  P  V  E  L  C  A  L  T  T  V  L  M  E  S  Q  V  V  L  I  I  I  F  *  L  K  Q  L  V  N  N  G  V  F  M   : G  T  L  R  P  I  V  T  Q  F  K  S  C  M  I  T  T  G  M  E  I  H  Q  K  I  Q  Q  H  L  H  L  K  L  :  A  W  I  *  T  V  G  I  T  *  R  N  T  Q  N  Q  Q  *  *  R  K  K  Y  H  K  F  I  *  T  G  L  F  T  I  F  F  P  *  E  *  G  *  D  Y  S  M  G  I  P  E  N  S  S  M  E  T  L  V  L  A  K  F  V  L  H  N  T  N  N  *  P  L  K  L  Q  E  M  A  L  S  C  S  R  I  P  A  S  C  C  L  F  P  K  R  K  P  T  P  L  L  S  S  V  I  M  P  T  M  L  I  F  F  V  G  T  M  T  V  L  P  A  N  T  S  K  F  S  R  H  W  L  V  M  Q  S  Q  F  S  T  N  R  V  A  M  R  L  T  A  R  L  L  T  L  I  K  L  S  T  L  Q  E  M  Q  I  M  L  F  *  S  W  G  W  I  K  L  K  R  G  N  N  L  I  A  M  T  *  C  S  R  G  S  K  K  I  L  S  I  V  L  L  K  L  Q  R  S  L  L  Y  W  *  F  S  Q  E  V  Q  L  I  F  L  S  R  N  I  T  L  K  *  E  A  F  C  G  L  A  I  L  V  K  L  E  E  L  L  *  L  K  S  Y  L  V  N  I  I  L  :  G  V  N  Y  L  L  L  G  I  L  K  P  L  S  K  Y  Q  *  Q  I  *  G  *  D  L  I  L  K  Q  V  T  L  E  E  H  I  D  S  T  K  V  P  K  F  T  S  L  D  M  V  L  A  T  L  L  I  P  M  D  S  T  L  P  L  Q  T  Q  S  S  *  I  N  Y  Y  L  *  R  Q  L  K  I  Q  T  Q  S  V  T  R  L  W  M  K  *  E  V  T  T  V  R  R  R  N  S  Q  L  M  L  V  L  K  T  Q  G  K  W  M  V  S  I  Q  Y  Y  F  L  *  N  R  T  K  R  E  M  E  V  L  S  N  S  *  L  D  S  K  V  *  A  *  R  Q  G  K  I  H  N  L  C  L  R  S  V  L  V  N  I  L  A  V  L  M  K  M  D  *  *  *  *  K  K  D  R  V  T  L  S  L  E  M  Q  S  I  L  S  T  S  *  Y  E  T  K  K  K  N  G  Y  K  K  L  F  L  L  F  *  I  S  Q  I  L  S  K  Y  L  *  E  W  Q  C  C  S  S  N  S  *  S  I  D  I  K  M  N  L  G  Y  Y  L  F  L  L  L  D  I  Y  F  I  F  S  S  F  F  F  K  N  S  K  S  F  I  R  N  S  S  T  T  S  I  K  M  L  R  M  L  T  S  V  S  H  Y  E  L  *  N  K  D  V  N  I  D  G  E </second_frame>
            <third_frame>   R  L  Y  T  E  S  T  S  Q  W  N  Y  V  L  L  Q  Q  C  *  W  N  P  K  L  C  *  L  *  S  F  N  *  N  S  S  S  T  M  G  F  S  W  :  V  H  Y  V  R  L  *  R  S  S  S  H  A  *  *  P  Q  V  W  K  Y  T  R  R  F  N  S  I  C  T  *  S  W :   H  G  Y  R  L  W  G  L  L  E  E  I  H  K  I  S  S  N  E  E  K  S  I  T  S  S  Y  R  Q  G  S  S  Q  S  F  F  H  K  N  E  V  R  I  I  Q  W  G  S  Q  K  T  A  L  W  K  H  *  S  *  P  S  L  C  S  T  T  P  T  T  S  P  *  S  C  K  K  W  H  C  L  A  Q  E  Y  R  Q  V  A  A  S  F  Q  S  E  N  Q  L  P  C  C  H  R  S  *  C  Q  Q  C  L  Y  S  S  W  E  L  *  R  S  S  L  Q  I  H  R  N  S  Q  G  I  G  W  L  C  K  V  S  S  V  P  T  G  L  Q  C  G  *  L  H  V  C  *  H  *  S  S  C  Q  H  C  K  K  C  R  L  C  C  F  N  H  G  V  G  S  N  S  R  E  G  T  I  *  S  R  *  L  S  A  P  G  A  A  R  K  S  Y  Q  *  C  C  *  S  C  K  E  A  C  Y  I  G  D  S  L  R  R  S  S  *  Y  F  F  R  E  I  *  P  *  N  R  K  H  F  V  G  W  L  S  W  *  S  W  R  N  C  F  S  *  N  H  I  W  *  T  *  S  W :   G  *  I  T  C  Y  L  V  S  S  S  L  C  Q  N  T  N  D  R  Y  E  D  E  T  *  S  *  N  R  L  P  W  K  N  I  S  I  L  Q  R  S  Q  S  L  R  V  W  I  W  S  *  L  H  Y  L  F  L  W  I  P  L  C  H  S  K  H  N  P  V  K  S  I  I  I  C  K  D  S  *  K  F  R  L  N  P  L  H  V  C  G  *  N  R  K  *  Q  L  *  E  G  E  I  L  S  S  C  *  C  *  K  L  R  G  N  G  W  *  A  S  S  T  T  F  C  E  T  G  Q  S  A  K  W  K  S  Y  Q  T  V  S  W  I  P  K  C  K  L  E  G  R  G  K  F  T  T  C  V  *  D  Q  S  L  *  T  S  *  Q  C  *  *  R  W  I  N  D  D  R  R  R  I  A  L  P  C  R  W  R  C  R  A  S  Y  Q  H  H  D  M  K  P  K  K  K  M  V  T  K  S  Y  F  Y  Y  F  E  F  H  K  S  S  L  N  T  Y  K  S  G  N  V  A  A  A  T  A  K  V  *  I  S  R  *  I  W  A  I  I  S  F  S  C  *  I  S  I  L  F  S  L  L  F  F  S  R  T  R  K  V  L  *  E  I  Q  V  L  L  A  L  R  C  *  G  C  S  L  V  Y  L  I  M  N  Y  R  T  K  T  L  T  *  T  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38846" stop="38973"/>
                    <exon start="39086" stop="39183"/>
                    <exon start="39831" stop="40595"/>
                    <exon start="40682" stop="41271"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1578</number_coding_nucleotides>
                  <number_encoded_amino_acids>526</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QDCIQKAQASGIMCSYNSVNGIPSCANYNLLTKTARQQWGFHGYITSDCDAVQVMHDNHRYGNTPEDSTAFALKAGMDIDCGDYLKKYTKSAVMKKKVSQVHIDRALHNLFSIRMRLGLFNGDPRKQLYGNISPSQVCAPQHQQLALEAARNGIVLLKNTGKLLPLSKAKTNSLAVIGHNANNAYILRGNYDGPPCKYIEILKALVGYAKSVQYQQGCNAANCTSANIDQAVNIARNADYVVLIMGLDQTQEREQFDRDDLVLPGQQENLINSVAKAAKKPVILVILSGGPVDISFAKYNPKIGSILWAGYPGEAGGIALAEIIFGEHNPGGKLPVTWYPQAFVKIPMTDMRMRPDPKTGYPGRTYRFYKGPKVYEFGYGLSYTTYSYGFHSATPNTIQLNQLLSVKTVENSDSIRYTFVDEIGSDNCEKAKFSAHVSVENSGEMDGKHPVLLFVKQDKARNGSPIKQLVGFQSVSLKAGENSQLVFEISPCEHLSSANEDGLMMIEEGSRYLVVGDAEHPINIMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56525" PGL_stop="58846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56525" e_stop="56790"/>
            <exon e_start="57960" e_stop="58139"/>
            <exon e_start="58572" e_stop="58667"/>
            <exon e_start="58746" e_stop="58846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.730" e_score="0.974"/>
          <exon-intron don_prob="0.995" acc_prob="0.441" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.990"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="56525" e_stop="56790" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.730">
            <gDNA_intron_boundary i_start="56791" i_stop="57959" i_length="1169"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="57960" e_stop="58139" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.441">
            <gDNA_intron_boundary i_start="58140" i_stop="58571" i_length="432"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="58572" e_stop="58667" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="58668" i_stop="58745" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="58746" e_stop="58846" e_length="101"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56525" stop="56790"/>
              <exon start="57960" stop="58139"/>
              <exon start="58572" stop="58667"/>
              <exon start="58746" stop="58846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTACTGACCTCACGTCTGAGGCTCAAACACCACCTTTACCTAGACAGAGTTCTTGGAAACATCCCACAGATCAGAGGCAAAATAGAAATTCACAGTTATCTGGTAGGAAGCCTGCTCTGACCAGTCAAAATTCTATGGAACCAAAATTGGGAGCCAAAAAACCTCCATCCAAGAAGCAACCTATAGTAAGTAGCCCGTGTCAAGATACATCTGTAGAACGCCTTATTCGTGAGGTGACAAATGAGAAGTTTTGGCAACATCCAG : ATGAAGCGGAGCTTCAGTGTGTACCTGGTCAGTTTGAATCTGTGGAAGAGTATGTTAAGGTGTTTGAACCCTTGCTCTTTGAGGAATGCCGGGCACAGCTGTACAGTACTTGGGAGGAGATGGCTGACACAGGAACCCATGTGAGGGTCCATATTAAAAATATTGAACGACGAGAAAGAG : GATGGTACGATGTAATCCTTTTTCCAGATTGTGAGTGGAAGTGGTTATTCAAAGAGGGAGATGTAGCAGTTCTCTCCACTCCACGTCCTGGATCAG : TCCGATCACGGAGAAGTGGCACCTCAACATTTGGGGATGGTGATGAGCCTGAAATTAGTGGTCGTGTAGCTGGTACTGTGAGGCGACACATACCTATTGAT</gDNA_template>
            <first_frame> C  Y  *  P  H  V  *  G  S  N  T  T  F  T  *  T  E  F  L  E  T  S  H  R  S  E  A  K  *  K  F  T  V  I  W  *  E  A  C  S  D  Q  S  K  F  Y  G  T  K  I  G  S  Q  K  T  S  I  Q  E  A  T  Y  S  K  *  P  V  S  R  Y  I  C  R  T  P  Y  S  *  G  D  K  *  E  V  L  A  T  S  R :   *  S  G  A  S  V  C  T  W  S  V  *  I  C  G  R  V  C  *  G  V  *  T  L  A  L  *  G  M  P  G  T  A  V  Q  Y  L  G  G  D  G  *  H  R  N  P  C  E  G  P  Y  *  K  Y  *  T  T  R  K  R :   M  V  R  C  N  P  F  S  R  L  *  V  E  V  V  I  Q  R  G  R  C  S  S  S  L  H  S  T  S  W  I  S :   P  I  T  E  K  W  H  L  N  I  W  G  W  *  *  A  *  N  *  W  S  C  S  W  Y  C  E  A  T  H  T  Y  *  </first_frame>
            <second_frame>  A  T  D  L  T  S  E  A  Q  T  P  P  L  P  R  Q  S  S  W  K  H  P  T  D  Q  R  Q  N  R  N  S  Q  L  S  G  R  K  P  A  L  T  S  Q  N  S  M  E  P  K  L  G  A  K  K  P  P  S  K  K  Q  P  I  V  S  S  P  C  Q  D  T  S  V  E  R  L  I  R  E  V  T  N  E  K  F  W  Q  H  P   : D  E  A  E  L  Q  C  V  P  G  Q  F  E  S  V  E  E  Y  V  K  V  F  E  P  L  L  F  E  E  C  R  A  Q  L  Y  S  T  W  E  E  M  A  D  T  G  T  H  V  R  V  H  I  K  N  I  E  R  R  E  R   : G  W  Y  D  V  I  L  F  P  D  C  E  W  K  W  L  F  K  E  G  D  V  A  V  L  S  T  P  R  P  G  S   : V  R  S  R  R  S  G  T  S  T  F  G  D  G  D  E  P  E  I  S  G  R  V  A  G  T  V  R  R  H  I  P  I  D </second_frame>
            <third_frame>   L  L  T  S  R  L  R  L  K  H  H  L  Y  L  D  R  V  L  G  N  I  P  Q  I  R  G  K  I  E  I  H  S  Y  L  V  G  S  L  L  *  P  V  K  I  L  W  N  Q  N  W  E  P  K  N  L  H  P  R  S  N  L  *  *  V  A  R  V  K  I  H  L  *  N  A  L  F  V  R  *  Q  M  R  S  F  G  N  I  Q  :  M  K  R  S  F  S  V  Y  L  V  S  L  N  L  W  K  S  M  L  R  C  L  N  P  C  S  L  R  N  A  G  H  S  C  T  V  L  G  R  R  W  L  T  Q  E  P  M  *  G  S  I  L  K  I  L  N  D  E  K  E  :  D  G  T  M  *  S  F  F  Q  I  V  S  G  S  G  Y  S  K  R  E  M  *  Q  F  S  P  L  H  V  L  D  Q  :  S  D  H  G  E  V  A  P  Q  H  L  G  M  V  M  S  L  K  L  V  V  V  *  L  V  L  *  G  D  T  Y  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56526" stop="56790"/>
                    <exon start="57960" stop="58139"/>
                    <exon start="58572" stop="58667"/>
                    <exon start="58746" stop="58846"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATDLTSEAQTPPLPRQSSWKHPTDQRQNRNSQLSGRKPALTSQNSMEPKLGAKKPPSKKQPIVSSPCQDTSVERLIREVTNEKFWQHPDEAELQCVPGQFESVEEYVKVFEPLLFEECRAQLYSTWEEMADTGTHVRVHIKNIERRERGWYDVILFPDCEWKWLFKEGDVAVLSTPRPGSVRSRRSGTSTFGDGDEPEISGRVAGTVRRHIPID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59844" PGL_stop="61526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59844" e_stop="60968"/>
            <exon e_start="61081" e_stop="61526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="59844" e_stop="60968" e_length="1125"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60969" i_stop="61080" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61081" e_stop="61526" e_length="446"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59844" stop="60401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59847" stop="60443"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59847" stop="60393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60363" stop="60968"/>
              <exon start="61081" stop="61238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60484" stop="60968"/>
              <exon start="61081" stop="61124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61096" stop="61526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGTCGTGATGAAGTTTATGGGTGGATGCACCAGTTGAGAGCTCGTGAAGCTCAGTTGTCACAGCAGATAGCTGGCCTTCAAAGAGAACTGACAGTTGCTGCAGCTGCTGGTCGTGCACAGGGATCTGTTGGAGTTGACCCTGATGTTCTTATGGCTAGGGACCAAAATCGAGATACTCTATTGCAGAACCTTGCGGCAGTGGTTGAGAATAGAGATAAAATACTGGTGGAGATGTCCCGTCTTCTGATTTTGGAGAGTAGGTTCCGTGGTGGTAACAATTTCAACATGGAGGAAGCTCGTGCTAGTCTGGAGGCTAGTTTTGCCAATGAAGCTGAAATTGTCTTCACTACTGTCTCAAGTAGTGGGAGAAAATTATTCTCTCGTCTTACCCATGGTTTTGACATGGTAGTCATTGATGAAGCAGCCCAGGCCAGTGAAGTAGGAGTCCTTCCTCCTCTTTCTCTTGGTGCAGCACGATGTGTTCTTGTTGGGGATCCGCAGCAGCTTCCTGCTACAGTTATCAGCAAAGCAGCTGGAACTTTGATGTACAGTAGAAGCCTCTTTGAGAGGTTTCAGCAAGCAGGCTGCCCAACTATGTTGTTATCAGTGCAGTACAGGATGCACCCACAAATTAGGGATTTTCCTTCTAGGTACTTTTATCAAGGTCGTCTTAGTGATAGTGAAAGTGTTGTCAATCTGCCTGACGAAGTTTACTACAAAGACTCTTTACTAAAGCCTTACATCTTTTATGACATTACACATGGTCGGGAATCACATAGAGGTGGATCCGTTTCATATCAGAATACACATGAAGCACAGTTCTGTCTTCGTTTGTATGAGCATCTTCAAAAAACTTGTAAATCTCTTGGTGTTGGGAAGGTCACTGTAGGTATAATCACTCCATACAAGCTGCAACTTAAATGCCTCCAAAGGGAGTTCGGGGATGTTTTAAATTCTGAAGAAGGAAAGGACATTTACATAAATACTGTTGATGCTTTCCAGGGTCAAGAGCGTGATGTTATTATAATGTCATGTGTGCGTGCCTCAGGTCATGGAGTTGGGTTTGTTGCAGATATACGGCGAATGAACGTTGCTCTTACTCGTGCAAGACGAGCTCTTTGG : GTAATGGGTAATGCCAATTCTCTGGTGCAATCAGAAGATTGGGCTGCATTGATTGCTGATGCCAAAACCAGAAAATGTTACATGGACATGGATACTTTGCCTAAGGACTTCTTGCTACCCAAGGCTGCTTCTCATGCTCCTCCACAGACCAATATGTCTAATAATCGAGGTTTAAGATCTGGGTTACGACATAGAATATATGATCCACACATGGAGCCCAGGTCAGGAACACCTTCAGAAGATGATGAAAAACCAAATGCATTATATGTAAGGAATGGAAGTTATAGGCCTCCTAAGCCCTCACTGGACAATTCGTTGAATGATTTTGATCAACCTGCTGATAGATCTAGAGATGCCTGGCAAAATGGTATACAGAGGAGGCAAAATACAGCTGGAATTGGGAGAAGAGACCTGTAATTGGTGTCCATGAATGTGCCACATATCAC</gDNA_template>
            <first_frame> K  S  R  D  E  V  Y  G  W  M  H  Q  L  R  A  R  E  A  Q  L  S  Q  Q  I  A  G  L  Q  R  E  L  T  V  A  A  A  A  G  R  A  Q  G  S  V  G  V  D  P  D  V  L  M  A  R  D  Q  N  R  D  T  L  L  Q  N  L  A  A  V  V  E  N  R  D  K  I  L  V  E  M  S  R  L  L  I  L  E  S  R  F  R  G  G  N  N  F  N  M  E  E  A  R  A  S  L  E  A  S  F  A  N  E  A  E  I  V  F  T  T  V  S  S  S  G  R  K  L  F  S  R  L  T  H  G  F  D  M  V  V  I  D  E  A  A  Q  A  S  E  V  G  V  L  P  P  L  S  L  G  A  A  R  C  V  L  V  G  D  P  Q  Q  L  P  A  T  V  I  S  K  A  A  G  T  L  M  Y  S  R  S  L  F  E  R  F  Q  Q  A  G  C  P  T  M  L  L  S  V  Q  Y  R  M  H  P  Q  I  R  D  F  P  S  R  Y  F  Y  Q  G  R  L  S  D  S  E  S  V  V  N  L  P  D  E  V  Y  Y  K  D  S  L  L  K  P  Y  I  F  Y  D  I  T  H  G  R  E  S  H  R  G  G  S  V  S  Y  Q  N  T  H  E  A  Q  F  C  L  R  L  Y  E  H  L  Q  K  T  C  K  S  L  G  V  G  K  V  T  V  G  I  I  T  P  Y  K  L  Q  L  K  C  L  Q  R  E  F  G  D  V  L  N  S  E  E  G  K  D  I  Y  I  N  T  V  D  A  F  Q  G  Q  E  R  D  V  I  I  M  S  C  V  R  A  S  G  H  G  V  G  F  V  A  D  I  R  R  M  N  V  A  L  T  R  A  R  R  A  L  W  :  V  M  G  N  A  N  S  L  V  Q  S  E  D  W  A  A  L  I  A  D  A  K  T  R  K  C  Y  M  D  M  D  T  L  P  K  D  F  L  L  P  K  A  A  S  H  A  P  P  Q  T  N  M  S  N  N  R  G  L  R  S  G  L  R  H  R  I  Y  D  P  H  M  E  P  R  S  G  T  P  S  E  D  D  E  K  P  N  A  L  Y  V  R  N  G  S  Y  R  P  P  K  P  S  L  D  N  S  L  N  D  F  D  Q  P  A  D  R  S  R  D  A  W  Q  N  G  I  Q  R  R  Q  N  T  A  G  I  G  R  R  D  L  *  L  V  S  M  N  V  P  H  I   </first_frame>
            <second_frame>  R  V  V  M  K  F  M  G  G  C  T  S  *  E  L  V  K  L  S  C  H  S  R  *  L  A  F  K  E  N  *  Q  L  L  Q  L  L  V  V  H  R  D  L  L  E  L  T  L  M  F  L  W  L  G  T  K  I  E  I  L  Y  C  R  T  L  R  Q  W  L  R  I  E  I  K  Y  W  W  R  C  P  V  F  *  F  W  R  V  G  S  V  V  V  T  I  S  T  W  R  K  L  V  L  V  W  R  L  V  L  P  M  K  L  K  L  S  S  L  L  S  Q  V  V  G  E  N  Y  S  L  V  L  P  M  V  L  T  W  *  S  L  M  K  Q  P  R  P  V  K  *  E  S  F  L  L  F  L  L  V  Q  H  D  V  F  L  L  G  I  R  S  S  F  L  L  Q  L  S  A  K  Q  L  E  L  *  C  T  V  E  A  S  L  R  G  F  S  K  Q  A  A  Q  L  C  C  Y  Q  C  S  T  G  C  T  H  K  L  G  I  F  L  L  G  T  F  I  K  V  V  L  V  I  V  K  V  L  S  I  C  L  T  K  F  T  T  K  T  L  Y  *  S  L  T  S  F  M  T  L  H  M  V  G  N  H  I  E  V  D  P  F  H  I  R  I  H  M  K  H  S  S  V  F  V  C  M  S  I  F  K  K  L  V  N  L  L  V  L  G  R  S  L  *  V  *  S  L  H  T  S  C  N  L  N  A  S  K  G  S  S  G  M  F  *  I  L  K  K  E  R  T  F  T  *  I  L  L  M  L  S  R  V  K  S  V  M  L  L  *  C  H  V  C  V  P  Q  V  M  E  L  G  L  L  Q  I  Y  G  E  *  T  L  L  L  L  V  Q  D  E  L  F  G :   *  W  V  M  P  I  L  W  C  N  Q  K  I  G  L  H  *  L  L  M  P  K  P  E  N  V  T  W  T  W  I  L  C  L  R  T  S  C  Y  P  R  L  L  L  M  L  L  H  R  P  I  C  L  I  I  E  V  *  D  L  G  Y  D  I  E  Y  M  I  H  T  W  S  P  G  Q  E  H  L  Q  K  M  M  K  N  Q  M  H  Y  M  *  G  M  E  V  I  G  L  L  S  P  H  W  T  I  R  *  M  I  L  I  N  L  L  I  D  L  E  M  P  G  K  M  V  Y  R  G  G  K  I  Q  L  E  L  G  E  E  T  C  N  W  C  P  *  M  C  H  I  S  </second_frame>
            <third_frame>   E  S  *  *  S  L  W  V  D  A  P  V  E  S  S  *  S  S  V  V  T  A  D  S  W  P  S  K  R  T  D  S  C  C  S  C  W  S  C  T  G  I  C  W  S  *  P  *  C  S  Y  G  *  G  P  K  S  R  Y  S  I  A  E  P  C  G  S  G  *  E  *  R  *  N  T  G  G  D  V  P  S  S  D  F  G  E  *  V  P  W  W  *  Q  F  Q  H  G  G  S  S  C  *  S  G  G  *  F  C  Q  *  S  *  N  C  L  H  Y  C  L  K  *  W  E  K  I  I  L  S  S  Y  P  W  F  *  H  G  S  H  *  *  S  S  P  G  Q  *  S  R  S  P  S  S  S  F  S  W  C  S  T  M  C  S  C  W  G  S  A  A  A  S  C  Y  S  Y  Q  Q  S  S  W  N  F  D  V  Q  *  K  P  L  *  E  V  S  A  S  R  L  P  N  Y  V  V  I  S  A  V  Q  D  A  P  T  N  *  G  F  S  F  *  V  L  L  S  R  S  S  *  *  *  *  K  C  C  Q  S  A  *  R  S  L  L  Q  R  L  F  T  K  A  L  H  L  L  *  H  Y  T  W  S  G  I  T  *  R  W  I  R  F  I  S  E  Y  T  *  S  T  V  L  S  S  F  V  *  A  S  S  K  N  L  *  I  S  W  C  W  E  G  H  C  R  Y  N  H  S  I  Q  A  A  T  *  M  P  P  K  G  V  R  G  C  F  K  F  *  R  R  K  G  H  L  H  K  Y  C  *  C  F  P  G  S  R  A  *  C  Y  Y  N  V  M  C  A  C  L  R  S  W  S  W  V  C  C  R  Y  T  A  N  E  R  C  S  Y  S  C  K  T  S  S  L   : G  N  G  *  C  Q  F  S  G  A  I  R  R  L  G  C  I  D  C  *  C  Q  N  Q  K  M  L  H  G  H  G  Y  F  A  *  G  L  L  A  T  Q  G  C  F  S  C  S  S  T  D  Q  Y  V  *  *  S  R  F  K  I  W  V  T  T  *  N  I  *  S  T  H  G  A  Q  V  R  N  T  F  R  R  *  *  K  T  K  C  I  I  C  K  E  W  K  L  *  A  S  *  A  L  T  G  Q  F  V  E  *  F  *  S  T  C  *  *  I  *  R  C  L  A  K  W  Y  T  E  E  A  K  Y  S  W  N  W  E  K  R  P  V  I  G  V  H  E  C  A  T  Y  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59844" stop="60968"/>
                    <exon start="61081" stop="61497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1539</number_coding_nucleotides>
                  <number_encoded_amino_acids>513</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSRDEVYGWMHQLRAREAQLSQQIAGLQRELTVAAAAGRAQGSVGVDPDVLMARDQNRDTLLQNLAAVVENRDKILVEMSRLLILESRFRGGNNFNMEEARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLSDSESVVNLPDEVYYKDSLLKPYIFYDITHGRESHRGGSVSYQNTHEAQFCLRLYEHLQKTCKSLGVGKVTVGIITPYKLQLKCLQREFGDVLNSEEGKDIYINTVDAFQGQERDVIIMSCVRASGHGVGFVADIRRMNVALTRARRALWVMGNANSLVQSEDWAALIADAKTRKCYMDMDTLPKDFLLPKAASHAPPQTNMSNNRGLRSGLRHRIYDPHMEPRSGTPSEDDEKPNALYVRNGSYRPPKPSLDNSLNDFDQPADRSRDAWQNGIQRRQNTAGIGRRDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="61927" PGL_stop="62524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61927" e_stop="62524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="61927" e_stop="62524" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61927" stop="62524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422401" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTATAATGGTAAATGTTTGGAATAAATGATGTTAGTATATGCTTGCTTTGGTTGGTATGAGAAGGAAAAGGCTTCATCTCAGCAAATGATCTTTTGAATATACAGCCATTCGGCTGGAAAATGGCAACCCTTTATGATTGCTTCTATGTTGATGATATATACCACCAAGACTTGACCCTTGAGACTTTGCAGCATGGCGTAAGTAGTAAGTCTGGCCTTGACAAGACAACTAGTCCATGAAAGAAACCCAGGACAGAGAGAGAACTGAACTTGGCCATGTGGGGAAATTGTTTTGAGAAAGTTACCGAACTCATTGTAGGCTCTGAAGATGGAACTCTTGTCAGATGGCAAGTCTGTGATTTGCAGAACCATTACGAGCTGCTGATGAACAAGTCACAGGAACACATATAGACTGACTCAGTAGAGTCCCAAGTGTTGATATGGAGGGACATGGAAGATAGCAACTAGTTCTGTACATATTCATGTGGAGAAAATAATTCTTTTCATTAGGTGGGGTAGTCTCATACATAGGAATATTGCAGTACTTTTTGTTATCCTTCTAAAATGAAATCTTGTTCTTCAGATCTTGTCTTCT</gDNA_template>
            <first_frame> T  L  *  W  *  M  F  G  I  N  D  V  S  I  C  L  L  W  L  V  *  E  G  K  G  F  I  S  A  N  D  L  L  N  I  Q  P  F  G  W  K  M  A  T  L  Y  D  C  F  Y  V  D  D  I  Y  H  Q  D  L  T  L  E  T  L  Q  H  G  V  S  S  K  S  G  L  D  K  T  T  S  P  *  K  K  P  R  T  E  R  E  L  N  L  A  M  W  G  N  C  F  E  K  V  T  E  L  I  V  G  S  E  D  G  T  L  V  R  W  Q  V  C  D  L  Q  N  H  Y  E  L  L  M  N  K  S  Q  E  H  I  *  T  D  S  V  E  S  Q  V  L  I  W  R  D  M  E  D  S  N  *  F  C  T  Y  S  C  G  E  N  N  S  F  H  *  V  G  *  S  H  T  *  E  Y  C  S  T  F  C  Y  P  S  K  M  K  S  C  S  S  D  L  V  F  </first_frame>
            <second_frame>  H  Y  N  G  K  C  L  E  *  M  M  L  V  Y  A  C  F  G  W  Y  E  K  E  K  A  S  S  Q  Q  M  I  F  *  I  Y  S  H  S  A  G  K  W  Q  P  F  M  I  A  S  M  L  M  I  Y  T  T  K  T  *  P  L  R  L  C  S  M  A  *  V  V  S  L  A  L  T  R  Q  L  V  H  E  R  N  P  G  Q  R  E  N  *  T  W  P  C  G  E  I  V  L  R  K  L  P  N  S  L  *  A  L  K  M  E  L  L  S  D  G  K  S  V  I  C  R  T  I  T  S  C  *  *  T  S  H  R  N  T  Y  R  L  T  Q  *  S  P  K  C  *  Y  G  G  T  W  K  I  A  T  S  S  V  H  I  H  V  E  K  I  I  L  F  I  R  W  G  S  L  I  H  R  N  I  A  V  L  F  V  I  L  L  K  *  N  L  V  L  Q  I  L  S  S </second_frame>
            <third_frame>   I  I  M  V  N  V  W  N  K  *  C  *  Y  M  L  A  L  V  G  M  R  R  K  R  L  H  L  S  K  *  S  F  E  Y  T  A  I  R  L  E  N  G  N  P  L  *  L  L  L  C  *  *  Y  I  P  P  R  L  D  P  *  D  F  A  A  W  R  K  *  *  V  W  P  *  Q  D  N  *  S  M  K  E  T  Q  D  R  E  R  T  E  L  G  H  V  G  K  L  F  *  E  S  Y  R  T  H  C  R  L  *  R  W  N  S  C  Q  M  A  S  L  *  F  A  E  P  L  R  A  A  D  E  Q  V  T  G  T  H  I  D  *  L  S  R  V  P  S  V  D  M  E  G  H  G  R  *  Q  L  V  L  Y  I  F  M  W  R  K  *  F  F  S  L  G  G  V  V  S  Y  I  G  I  L  Q  Y  F  L  L  S  F  *  N  E  I  L  F  F  R  S  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="66634" PGL_stop="72059"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66656" e_stop="66937"/>
            <exon e_start="68850" e_stop="68974"/>
            <exon e_start="69047" e_stop="69223"/>
            <exon e_start="69665" e_stop="69763"/>
            <exon e_start="70114" e_stop="70356"/>
            <exon e_start="71474" e_stop="72059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66656" e_stop="66937" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.809">
            <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68850" e_stop="68974" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69223" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69665" e_stop="69763" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70114" e_stop="70356" e_length="243"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="71474" e_stop="72059" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66656" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66723" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66874" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69223"/>
              <exon start="69665" stop="69691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66875" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69223"/>
              <exon start="69665" stop="69702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69117" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70236" stop="70356"/>
              <exon start="71474" stop="71849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71638" stop="72059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71697" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG : CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG : GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG : AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG : CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</gDNA_template>
            <first_frame> V  N  Y  L  T  C  L  L  V  Q  I  L  T  I  L  S  F  V  V  T  K  R  T  I  F  R  F  F  S  H  G  E  C  Y  S  Y  I  *  W  I  I  F  H  Y  I  Y  V  *  S  L  *  T  M  Y  N  N  L  F  F  F  I  S  A  K  S  *  S  S  P  I  G  V  R  F  L  T  T  E  E  I  F  F  N  F  I  Q  F  F  K  F  T  V  T  Q  :  R  A  V  V  E  *  F  *  L  H  Q  *  N  S  L  K  L  *  V  L  V  *  Q  N  P  C  Q  M  A  W  R  I  L  *  N  R  K  K  N  G  T  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K  A  G  T  *  R  R  Q  L  R  C  L  K  R  P  *  S  G  D  W  I  S  C  L  K  K  F  A  G :   M  M  W  P  V  K  Q  K  Q  A  K  F  I  G  Q  T  I  K  T  S  M  G  G  Q  F  L  S  *  D  L  V  A  R :   T  L  S  L  *  K  D  R  *  S  I  *  Y  I  A  W  K  M  Q  L  *  I  S  Q  K  T  R  N  R  *  F  G  *  S  T  F  M  D  S  L  C  Q  T  S  Q  S  R  *  Q  K  K  Q  L  I  F  W  K  T  I  I  L  K  D  W  E  *  L  F  Y  M  I  H  P  K  Y  L  N  H  F  G  S :   *  Q  S  L  F  W  T  Q  R  L  R  A  K  S  I  L  C  T  Q  M  T  P  T  A  R  K  *  W  K  K  C  L  T  *  V  W  W  S  L  H  L  A  E  M  I  R  L  I  L  M  S  I  N  M  L  R  G  *  E  K  M  M  K  S  C  L  L  S  G  R  K  T  I  I  L  H  Q  M  H  N  L  L  *  Q  L  I  P  L  *  S  Q  Q  I  L  I  L  I  L  K  S  *  M  R  K  *  R  N  L  L  L  M  L  M  K  K  N  H  Q  L  K  K  L  C  L  E  V  T  V  Q  M  R  M  S  K  Q  C  S  *  R  Q  C  L  Q  L  F  S  F  V  N  A  H  K  M  G  N  L  T  I  S  P  N  G  S  E  L  K  C  T  *  Q  R  T  Y  *  S  R  *  C  N  E  *  Y  A  I  K  *  M  L  C  L  F  I  L  G  S </first_frame>
            <second_frame>  *  I  T  L  P  V  C  W  F  R  F  *  P  F  C  P  L  S  S  P  R  G  L  S  S  D  F  S  H  M  V  N  A  I  H  T  Y  N  G  L  F  S  I  I  Y  M  F  S  H  C  K  Q  C  T  I  T  F  F  F  L  S  L  L  K  A  D  L  L  P  L  E  S  G  S  *  Q  L  R  R  F  S  S  T  L  S  N  S  S  N  L  Q  L  P  S :   V  Q  W  L  N  N  F  D  Y  T  S  E  I  P  *  N  Y  E  Y  *  C  N  K  I  H  A  K  W  L  G  E  F  F  E  T  G  R  R  T  E  Q   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  L  E  R  K  E  G  S  *  D  A  *  S  V  P  E  V  E  T  G  F  H  A  *  R  N  S  L   : G  *  C  G  Q  *  S  R  N  R  Q  N  L  *  V  K  L  *  R  Q  A  W  E  A  S  S  C  H  E  T  S  L  P   : E  H  *  V  S  R  R  T  D  E  V  F  S  I  L  P  G  K  C  S  C  K  S  P  K  R  P  G  T  D  D  L  V  D  R  L  S  W  I  H  S  V  K  P  L  N  Q  G  D  K  R  N  S  S  Y  F  G  R  L  L  S  *  K  T  G  N  S  Y  F  I  *  S  T  Q  N  I  *  T  I  L  E   : A  S  K  A  F  F  G  P  K  D  C  E  Q  S  P  F  Y  V  L  R  *  P  Q  Q  Q  E  N  D  G  R  N  V  *  H  E  S  G  G  V  C  I  W  R  R  *  *  G  *  F  *  C  Q  *  I  C  *  E  D  E  R  R  *  *  K  V  V  F  F  L  E  E  R  R  *  F  C  I  K  C  T  T  Y  C  D  S  *  S  L  F  R  A  N  K  F  *  F  *  F  *  S  L  R  *  E  S  R  E  T  F  S  *  C  *  *  R  R  I  I  N  *  R  N  F  A  W  K  *  Q  Y  K  C  E  C  Q  S  S  V  A  K  G  N  V  F  N  F  L  V  L  *  M  L  T  R  W  A  I  *  P  F  L  Q  M  V  Q  N  *  S  V  L  S  R  E  H  I  N  Q  G  D  V  M  S  D  M  L  *  N  E  C  C  A  S  L  Y  *  V   </second_frame>
            <third_frame>   K  L  P  Y  L  F  A  G  S  D  F  D  H  F  V  L  C  R  H  Q  E  D  Y  L  Q  I  F  L  T  W  *  M  L  F  I  H  I  M  D  Y  F  P  L  Y  I  C  L  V  T  V  N  N  V  Q  *  P  F  F  F  Y  L  C  *  K  L  I  F  S  H  W  S  P  V  L  D  N  *  G  D  F  L  Q  L  Y  P  I  L  Q  I  Y  S  Y  P   : A  C  S  G  *  I  I  L  I  T  P  V  K  F  P  E  T  M  S  T  S  V  T  K  S  M  P  N  G  L  E  N  S  L  K  P  E  E  E  R  N  K  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S  W  N  V  K  K  A  A  K  M  L  K  A  S  L  K  W  R  L  D  F  M  P  E  E  I  R  W  :  D  D  V  A  S  E  A  E  T  G  K  I  Y  R  S  N  Y  K  D  K  H  G  R  P  V  L  V  M  R  P  R  C  Q  :  N  T  K  S  L  E  G  Q  M  K  Y  L  V  Y  C  L  E  N  A  V  V  N  L  P  K  D  Q  E  Q  M  I  W  L  I  D  F  H  G  F  T  L  S  N  L  S  I  K  V  T  K  E  T  A  H  I  L  E  D  Y  Y  P  E  R  L  G  I  A  I  L  Y  D  P  P  K  I  F  E  P  F  W  K  :  L  A  K  P  F  L  D  P  K  T  A  S  K  V  H  F  M  Y  S  D  D  P  N  S  K  K  M  M  E  E  M  F  D  M  S  L  V  E  S  A  F  G  G  D  D  K  A  D  F  D  V  N  K  Y  A  E  R  M  R  E  D  D  E  K  L  S  S  F  W  K  K  D  D  N  S  A  S  N  A  Q  L  T  V  T  A  D  P  S  L  E  P  T  N  S  D  S  D  S  E  V  L  D  E  K  V  E  K  P  S  L  D  V  D  E  E  E  S  S  I  E  E  T  L  P  G  S  N  S  T  N  A  N  V  K  A  V  *  L  K  A  M  S  S  T  F  *  F  C  K  C  S  Q  D  G  Q  F  N  H  F  S  K  W  F  R  T  E  V  Y  L  A  E  N  I  L  I  K  V  M  *  *  V  I  C  Y  K  M  N  V  V  P  L  Y  T  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68864" stop="68974"/>
                    <exon start="69047" stop="69223"/>
                    <exon start="69665" stop="69763"/>
                    <exon start="70114" stop="70356"/>
                    <exon start="71474" stop="71884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILITPVKFPETMSTSVTKSMPNGLENSLKPEEERNKIDEMRKLIGPLSGKLALYCSDASISRYLAAQSWNVKKAAKMLKASLKWRLDFMPEEIRWDDVASEAETGKIYRSNYKDKHGRPVLVMRPRCQNTKSLEGQMKYLVYCLENAVVNLPKDQEQMIWLIDFHGFTLSNLSIKVTKETAHILEDYYPERLGIAILYDPPKIFEPFWKLAKPFLDPKTASKVHFMYSDDPNSKKMMEEMFDMSLVESAFGGDDKADFDVNKYAERMREDDEKLSSFWKKDDNSASNAQLTVTADPSLEPTNSDSDSEVLDEKVEKPSLDVDEEESSIEETLPGSNSTNANVKAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70608" e_stop="72059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="70608" e_stop="72059" e_length="1452"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70608" stop="71178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70717" stop="71373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70717" stop="71372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70717" stop="71307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70717" stop="71241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71346" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71365" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71638" stop="72059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71697" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCATGAAAATTGCATGACTGACGGCATGGTCAATTGGTGTTTGCAATTGGTATATACTCCTATATCACTCTTCTGTAGGCCTAGTCCTTTACTCTGGGTCTATGAGTTTGCTGGTAACTTGTTATCATGCAGACTGGGATTAGCTTTGATAGCCTAAACTGAGCCCAAGTTGTAGTGACTTCTGGCTTTCTGGGACTCCAAGACATTGTCTGCATGTCTTGCATAGTTTGTAATTACTTTTTAGAAATTCAGTTGTCGTAAGATGGCTGATGGATTTTGGTGCGAACAATGGCTTTCCCAAAGGACAGAAATGCTGAAACTTTGAATGAAGGCTAAGTGTCTGCAGTAGAAAACTTAATTCATGTATTGCGATGCATGGAATTGAGTAAGAAGAATGAGGACAATGTTGTCAATCAGATGACCATGGACTTCTATTTTCATGAAATCTGAACACACTGAAACAGAGAAACTATAAAAAGTTAAGTGAGGAAAGAACGGCACGTGAGAACTGAATCAGGGATTTTGATGAAAGCTAGTTTTACTTGATCAAGAAAAAATTAACTGGATAAAGATAAGAGGCTTTCTGAAGAATAATAAAAGCAGGAAAGTGTGAGTTATATATTAATTACTTATCCTCGCCCAAGATTTGGTTGGGTTATTTAGCAACCATTAGAGCAAAAATATGTGCCTGCTTTAATTTTAAGCATTCAAGTTGTTGCATTACTTAAGGTTACATTTGCTTTATTCCAATAGATTCCCTTTGAACTCTGTTTTCTCAAATATTAAGATGAGACATCCCTTATTTGCAGCATCTCCATTTGATTACCAGGCAACCTATTATTTTGTTTATCTAAATGGTGCAGCTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</gDNA_template>
            <first_frame> L  S  *  K  L  H  D  *  R  H  G  Q  L  V  F  A  I  G  I  Y  S  Y  I  T  L  L  *  A  *  S  F  T  L  G  L  *  V  C  W  *  L  V  I  M  Q  T  G  I  S  F  D  S  L  N  *  A  Q  V  V  V  T  S  G  F  L  G  L  Q  D  I  V  C  M  S  C  I  V  C  N  Y  F  L  E  I  Q  L  S  *  D  G  *  W  I  L  V  R  T  M  A  F  P  K  D  R  N  A  E  T  L  N  E  G  *  V  S  A  V  E  N  L  I  H  V  L  R  C  M  E  L  S  K  K  N  E  D  N  V  V  N  Q  M  T  M  D  F  Y  F  H  E  I  *  T  H  *  N  R  E  T  I  K  S  *  V  R  K  E  R  H  V  R  T  E  S  G  I  L  M  K  A  S  F  T  *  S  R  K  N  *  L  D  K  D  K  R  L  S  E  E  *  *  K  Q  E  S  V  S  Y  I  L  I  T  Y  P  R  P  R  F  G  W  V  I  *  Q  P  L  E  Q  K  Y  V  P  A  L  I  L  S  I  Q  V  V  A  L  L  K  V  T  F  A  L  F  Q  *  I  P  F  E  L  C  F  L  K  Y  *  D  E  T  S  L  I  C  S  I  S  I  *  L  P  G  N  L  L  F  C  L  S  K  W  C  S  *  Q  S  L  F  W  T  Q  R  L  R  A  K  S  I  L  C  T  Q  M  T  P  T  A  R  K  *  W  K  K  C  L  T  *  V  W  W  S  L  H  L  A  E  M  I  R  L  I  L  M  S  I  N  M  L  R  G  *  E  K  M  M  K  S  C  L  L  S  G  R  K  T  I  I  L  H  Q  M  H  N  L  L  *  Q  L  I  P  L  *  S  Q  Q  I  L  I  L  I  L  K  S  *  M  R  K  *  R  N  L  L  L  M  L  M  K  K  N  H  Q  L  K  K  L  C  L  E  V  T  V  Q  M  R  M  S  K  Q  C  S  *  R  Q  C  L  Q  L  F  S  F  V  N  A  H  K  M  G  N  L  T  I  S  P  N  G  S  E  L  K  C  T  *  Q  R  T  Y  *  S  R  *  C  N  E  *  Y  A  I  K  *  M  L  C  L  F  I  L  G  S </first_frame>
            <second_frame>  C  H  E  N  C  M  T  D  G  M  V  N  W  C  L  Q  L  V  Y  T  P  I  S  L  F  C  R  P  S  P  L  L  W  V  Y  E  F  A  G  N  L  L  S  C  R  L  G  L  A  L  I  A  *  T  E  P  K  L  *  *  L  L  A  F  W  D  S  K  T  L  S  A  C  L  A  *  F  V  I  T  F  *  K  F  S  C  R  K  M  A  D  G  F  W  C  E  Q  W  L  S  Q  R  T  E  M  L  K  L  *  M  K  A  K  C  L  Q  *  K  T  *  F  M  Y  C  D  A  W  N  *  V  R  R  M  R  T  M  L  S  I  R  *  P  W  T  S  I  F  M  K  S  E  H  T  E  T  E  K  L  *  K  V  K  *  G  K  N  G  T  *  E  L  N  Q  G  F  *  *  K  L  V  L  L  D  Q  E  K  I  N  W  I  K  I  R  G  F  L  K  N  N  K  S  R  K  V  *  V  I  Y  *  L  L  I  L  A  Q  D  L  V  G  L  F  S  N  H  *  S  K  N  M  C  L  L  *  F  *  A  F  K  L  L  H  Y  L  R  L  H  L  L  Y  S  N  R  F  P  L  N  S  V  F  S  N  I  K  M  R  H  P  L  F  A  A  S  P  F  D  Y  Q  A  T  Y  Y  F  V  Y  L  N  G  A  A  S  K  A  F  F  G  P  K  D  C  E  Q  S  P  F  Y  V  L  R  *  P  Q  Q  Q  E  N  D  G  R  N  V  *  H  E  S  G  G  V  C  I  W  R  R  *  *  G  *  F  *  C  Q  *  I  C  *  E  D  E  R  R  *  *  K  V  V  F  F  L  E  E  R  R  *  F  C  I  K  C  T  T  Y  C  D  S  *  S  L  F  R  A  N  K  F  *  F  *  F  *  S  L  R  *  E  S  R  E  T  F  S  *  C  *  *  R  R  I  I  N  *  R  N  F  A  W  K  *  Q  Y  K  C  E  C  Q  S  S  V  A  K  G  N  V  F  N  F  L  V  L  *  M  L  T  R  W  A  I  *  P  F  L  Q  M  V  Q  N  *  S  V  L  S  R  E  H  I  N  Q  G  D  V  M  S  D  M  L  *  N  E  C  C  A  S  L  Y  *  V   </second_frame>
            <third_frame>   V  M  K  I  A  *  L  T  A  W  S  I  G  V  C  N  W  Y  I  L  L  Y  H  S  S  V  G  L  V  L  Y  S  G  S  M  S  L  L  V  T  C  Y  H  A  D  W  D  *  L  *  *  P  K  L  S  P  S  C  S  D  F  W  L  S  G  T  P  R  H  C  L  H  V  L  H  S  L  *  L  L  F  R  N  S  V  V  V  R  W  L  M  D  F  G  A  N  N  G  F  P  K  G  Q  K  C  *  N  F  E  *  R  L  S  V  C  S  R  K  L  N  S  C  I  A  M  H  G  I  E  *  E  E  *  G  Q  C  C  Q  S  D  D  H  G  L  L  F  S  *  N  L  N  T  L  K  Q  R  N  Y  K  K  L  S  E  E  R  T  A  R  E  N  *  I  R  D  F  D  E  S  *  F  Y  L  I  K  K  K  L  T  G  *  R  *  E  A  F  *  R  I  I  K  A  G  K  C  E  L  Y  I  N  Y  L  S  S  P  K  I  W  L  G  Y  L  A  T  I  R  A  K  I  C  A  C  F  N  F  K  H  S  S  C  C  I  T  *  G  Y  I  C  F  I  P  I  D  S  L  *  T  L  F  S  Q  I  L  R  *  D  I  P  Y  L  Q  H  L  H  L  I  T  R  Q  P  I  I  L  F  I  *  M  V  Q  L  A  K  P  F  L  D  P  K  T  A  S  K  V  H  F  M  Y  S  D  D  P  N  S  K  K  M  M  E  E  M  F  D  M  S  L  V  E  S  A  F  G  G  D  D  K  A  D  F  D  V  N  K  Y  A  E  R  M  R  E  D  D  E  K  L  S  S  F  W  K  K  D  D  N  S  A  S  N  A  Q  L  T  V  T  A  D  P  S  L  E  P  T  N  S  D  S  D  S  E  V  L  D  E  K  V  E  K  P  S  L  D  V  D  E  E  E  S  S  I  E  E  T  L  P  G  S  N  S  T  N  A  N  V  K  A  V  *  L  K  A  M  S  S  T  F  *  F  C  K  C  S  Q  D  G  Q  F  N  H  F  S  K  W  F  R  T  E  V  Y  L  A  E  N  I  L  I  K  V  M  *  *  V  I  C  Y  K  M  N  V  V  P  L  Y  T  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71465" stop="71884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVQLAKPFLDPKTASKVHFMYSDDPNSKKMMEEMFDMSLVESAFGGDDKADFDVNKYAERMREDDEKLSSFWKKDDNSASNAQLTVTADPSLEPTNSDSDSEVLDEKVEKPSLDVDEEESSIEETLPGSNSTNANVKAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68370" e_stop="68522"/>
            <exon e_start="68857" e_stop="68974"/>
            <exon e_start="69047" e_stop="69223"/>
            <exon e_start="69665" e_stop="69763"/>
            <exon e_start="70114" e_stop="70356"/>
            <exon e_start="71474" e_stop="72059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.720" acc_prob="0.000" e_score="0.961"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.907"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.966"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="68370" e_stop="68522" e_length="153"/>
          </exon>
          <intron i_serial="1" don_prob="0.720" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68523" i_stop="68856" i_length="334"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="68857" e_stop="68974" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="69047" e_stop="69223" e_length="177"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69665" e_stop="69763" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70114" e_stop="70356" e_length="243"/>
          </exon>
          <intron i_serial="5" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117"/>
          </intron>
          <exon e_serial="6" e_score="0.969">
            <gDNA_exon_boundary e_start="71474" e_stop="72059" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68370" stop="68522"/>
              <exon start="68857" stop="68974"/>
              <exon start="69047" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69117" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70236" stop="70356"/>
              <exon start="71474" stop="71849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71638" stop="72059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71697" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTGTTAGCATTATAAAAGGAAAAACAGATACGAGGAATGTTTTGTAAATGTGATTTGAACTTCTTGTAACTAATGTCATTTCTGAGATGGTCCTAACTTCAATATTTATGTTCAGAATTTGCAATCCCATACAGTTGCTAATACGGGGAG : TGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG : GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG : AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG : CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</gDNA_template>
            <first_frame> F  L  L  A  L  *  K  E  K  Q  I  R  G  M  F  C  K  C  D  L  N  F  L  *  L  M  S  F  L  R  W  S  *  L  Q  Y  L  C  S  E  F  A  I  P  Y  S  C  *  Y  G  E  :  W  L  N  N  F  D  Y  T  S  E  I  P  *  N  Y  E  Y  *  C  N  K  I  H  A  K  W  L  G  E  F  F  E  T  G  R  R  T  E  Q   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  L  E  R  K  E  G  S  *  D  A  *  S  V  P  E  V  E  T  G  F  H  A  *  R  N  S  L   : G  *  C  G  Q  *  S  R  N  R  Q  N  L  *  V  K  L  *  R  Q  A  W  E  A  S  S  C  H  E  T  S  L  P   : E  H  *  V  S  R  R  T  D  E  V  F  S  I  L  P  G  K  C  S  C  K  S  P  K  R  P  G  T  D  D  L  V  D  R  L  S  W  I  H  S  V  K  P  L  N  Q  G  D  K  R  N  S  S  Y  F  G  R  L  L  S  *  K  T  G  N  S  Y  F  I  *  S  T  Q  N  I  *  T  I  L  E   : A  S  K  A  F  F  G  P  K  D  C  E  Q  S  P  F  Y  V  L  R  *  P  Q  Q  Q  E  N  D  G  R  N  V  *  H  E  S  G  G  V  C  I  W  R  R  *  *  G  *  F  *  C  Q  *  I  C  *  E  D  E  R  R  *  *  K  V  V  F  F  L  E  E  R  R  *  F  C  I  K  C  T  T  Y  C  D  S  *  S  L  F  R  A  N  K  F  *  F  *  F  *  S  L  R  *  E  S  R  E  T  F  S  *  C  *  *  R  R  I  I  N  *  R  N  F  A  W  K  *  Q  Y  K  C  E  C  Q  S  S  V  A  K  G  N  V  F  N  F  L  V  L  *  M  L  T  R  W  A  I  *  P  F  L  Q  M  V  Q  N  *  S  V  L  S  R  E  H  I  N  Q  G  D  V  M  S  D  M  L  *  N  E  C  C  A  S  L  Y  *  V   </first_frame>
            <second_frame>  S  C  *  H  Y  K  R  K  N  R  Y  E  E  C  F  V  N  V  I  *  T  S  C  N  *  C  H  F  *  D  G  P  N  F  N  I  Y  V  Q  N  L  Q  S  H  T  V  A  N  T  G  S :   G  *  I  I  L  I  T  P  V  K  F  P  E  T  M  S  T  S  V  T  K  S  M  P  N  G  L  E  N  S  L  K  P  E  E  E  R  N  K  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S  W  N  V  K  K  A  A  K  M  L  K  A  S  L  K  W  R  L  D  F  M  P  E  E  I  R  W  :  D  D  V  A  S  E  A  E  T  G  K  I  Y  R  S  N  Y  K  D  K  H  G  R  P  V  L  V  M  R  P  R  C  Q  :  N  T  K  S  L  E  G  Q  M  K  Y  L  V  Y  C  L  E  N  A  V  V  N  L  P  K  D  Q  E  Q  M  I  W  L  I  D  F  H  G  F  T  L  S  N  L  S  I  K  V  T  K  E  T  A  H  I  L  E  D  Y  Y  P  E  R  L  G  I  A  I  L  Y  D  P  P  K  I  F  E  P  F  W  K  :  L  A  K  P  F  L  D  P  K  T  A  S  K  V  H  F  M  Y  S  D  D  P  N  S  K  K  M  M  E  E  M  F  D  M  S  L  V  E  S  A  F  G  G  D  D  K  A  D  F  D  V  N  K  Y  A  E  R  M  R  E  D  D  E  K  L  S  S  F  W  K  K  D  D  N  S  A  S  N  A  Q  L  T  V  T  A  D  P  S  L  E  P  T  N  S  D  S  D  S  E  V  L  D  E  K  V  E  K  P  S  L  D  V  D  E  E  E  S  S  I  E  E  T  L  P  G  S  N  S  T  N  A  N  V  K  A  V  *  L  K  A  M  S  S  T  F  *  F  C  K  C  S  Q  D  G  Q  F  N  H  F  S  K  W  F  R  T  E  V  Y  L  A  E  N  I  L  I  K  V  M  *  *  V  I  C  Y  K  M  N  V  V  P  L  Y  T  R  *  </second_frame>
            <third_frame>   L  V  S  I  I  K  G  K  T  D  T  R  N  V  L  *  M  *  F  E  L  L  V  T  N  V  I  S  E  M  V  L  T  S  I  F  M  F  R  I  C  N  P  I  Q  L  L  I  R  G   : V  V  E  *  F  *  L  H  Q  *  N  S  L  K  L  *  V  L  V  *  Q  N  P  C  Q  M  A  W  R  I  L  *  N  R  K  K  N  G  T  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K  A  G  T  *  R  R  Q  L  R  C  L  K  R  P  *  S  G  D  W  I  S  C  L  K  K  F  A  G :   M  M  W  P  V  K  Q  K  Q  A  K  F  I  G  Q  T  I  K  T  S  M  G  G  Q  F  L  S  *  D  L  V  A  R :   T  L  S  L  *  K  D  R  *  S  I  *  Y  I  A  W  K  M  Q  L  *  I  S  Q  K  T  R  N  R  *  F  G  *  S  T  F  M  D  S  L  C  Q  T  S  Q  S  R  *  Q  K  K  Q  L  I  F  W  K  T  I  I  L  K  D  W  E  *  L  F  Y  M  I  H  P  K  Y  L  N  H  F  G  S :   *  Q  S  L  F  W  T  Q  R  L  R  A  K  S  I  L  C  T  Q  M  T  P  T  A  R  K  *  W  K  K  C  L  T  *  V  W  W  S  L  H  L  A  E  M  I  R  L  I  L  M  S  I  N  M  L  R  G  *  E  K  M  M  K  S  C  L  L  S  G  R  K  T  I  I  L  H  Q  M  H  N  L  L  *  Q  L  I  P  L  *  S  Q  Q  I  L  I  L  I  L  K  S  *  M  R  K  *  R  N  L  L  L  M  L  M  K  K  N  H  Q  L  K  K  L  C  L  E  V  T  V  Q  M  R  M  S  K  Q  C  S  *  R  Q  C  L  Q  L  F  S  F  V  N  A  H  K  M  G  N  L  T  I  S  P  N  G  S  E  L  K  C  T  *  Q  R  T  Y  *  S  R  *  C  N  E  *  Y  A  I  K  *  M  L  C  L  F  I  L  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68864" stop="68974"/>
                    <exon start="69047" stop="69223"/>
                    <exon start="69665" stop="69763"/>
                    <exon start="70114" stop="70356"/>
                    <exon start="71474" stop="71884"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILITPVKFPETMSTSVTKSMPNGLENSLKPEEERNKIDEMRKLIGPLSGKLALYCSDASISRYLAAQSWNVKKAAKMLKASLKWRLDFMPEEIRWDDVASEAETGKIYRSNYKDKHGRPVLVMRPRCQNTKSLEGQMKYLVYCLENAVVNLPKDQEQMIWLIDFHGFTLSNLSIKVTKETAHILEDYYPERLGIAILYDPPKIFEPFWKLAKPFLDPKTASKVHFMYSDDPNSKKMMEEMFDMSLVESAFGGDDKADFDVNKYAERMREDDEKLSSFWKKDDNSASNAQLTVTADPSLEPTNSDSDSEVLDEKVEKPSLDVDEEESSIEETLPGSNSTNANVKAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="66845" e_stop="66937"/>
            <exon e_start="69047" e_stop="69223"/>
            <exon e_start="69665" e_stop="69763"/>
            <exon e_start="70114" e_stop="70356"/>
            <exon e_start="71474" e_stop="72059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66845" e_stop="66937" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="66938" i_stop="69046" i_length="2109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69223" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69665" e_stop="69763" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70114" e_stop="70356" e_length="243"/>
          </exon>
          <intron i_serial="4" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="71474" e_stop="72059" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66845" stop="66937"/>
              <exon start="69047" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69117" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70236" stop="70356"/>
              <exon start="71474" stop="71849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71638" stop="72059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71697" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG : GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG : AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG : CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</gDNA_template>
            <first_frame> K  S  *  S  S  P  I  G  V  R  F  L  T  T  E  E  I  F  F  N  F  I  Q  F  F  K  F  T  V  T  Q  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S  W  N  V  K  K  A  A  K  M  L  K  A  S  L  K  W  R  L  D  F  M  P  E  E  I  R  W  :  D  D  V  A  S  E  A  E  T  G  K  I  Y  R  S  N  Y  K  D  K  H  G  R  P  V  L  V  M  R  P  R  C  Q  :  N  T  K  S  L  E  G  Q  M  K  Y  L  V  Y  C  L  E  N  A  V  V  N  L  P  K  D  Q  E  Q  M  I  W  L  I  D  F  H  G  F  T  L  S  N  L  S  I  K  V  T  K  E  T  A  H  I  L  E  D  Y  Y  P  E  R  L  G  I  A  I  L  Y  D  P  P  K  I  F  E  P  F  W  K  :  L  A  K  P  F  L  D  P  K  T  A  S  K  V  H  F  M  Y  S  D  D  P  N  S  K  K  M  M  E  E  M  F  D  M  S  L  V  E  S  A  F  G  G  D  D  K  A  D  F  D  V  N  K  Y  A  E  R  M  R  E  D  D  E  K  L  S  S  F  W  K  K  D  D  N  S  A  S  N  A  Q  L  T  V  T  A  D  P  S  L  E  P  T  N  S  D  S  D  S  E  V  L  D  E  K  V  E  K  P  S  L  D  V  D  E  E  E  S  S  I  E  E  T  L  P  G  S  N  S  T  N  A  N  V  K  A  V  *  L  K  A  M  S  S  T  F  *  F  C  K  C  S  Q  D  G  Q  F  N  H  F  S  K  W  F  R  T  E  V  Y  L  A  E  N  I  L  I  K  V  M  *  *  V  I  C  Y  K  M  N  V  V  P  L  Y  T  R  *  </first_frame>
            <second_frame>  K  A  D  L  L  P  L  E  S  G  S  *  Q  L  R  R  F  S  S  T  L  S  N  S  S  N  L  Q  L  P  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K  A  G  T  *  R  R  Q  L  R  C  L  K  R  P  *  S  G  D  W  I  S  C  L  K  K  F  A  G :   M  M  W  P  V  K  Q  K  Q  A  K  F  I  G  Q  T  I  K  T  S  M  G  G  Q  F  L  S  *  D  L  V  A  R :   T  L  S  L  *  K  D  R  *  S  I  *  Y  I  A  W  K  M  Q  L  *  I  S  Q  K  T  R  N  R  *  F  G  *  S  T  F  M  D  S  L  C  Q  T  S  Q  S  R  *  Q  K  K  Q  L  I  F  W  K  T  I  I  L  K  D  W  E  *  L  F  Y  M  I  H  P  K  Y  L  N  H  F  G  S :   *  Q  S  L  F  W  T  Q  R  L  R  A  K  S  I  L  C  T  Q  M  T  P  T  A  R  K  *  W  K  K  C  L  T  *  V  W  W  S  L  H  L  A  E  M  I  R  L  I  L  M  S  I  N  M  L  R  G  *  E  K  M  M  K  S  C  L  L  S  G  R  K  T  I  I  L  H  Q  M  H  N  L  L  *  Q  L  I  P  L  *  S  Q  Q  I  L  I  L  I  L  K  S  *  M  R  K  *  R  N  L  L  L  M  L  M  K  K  N  H  Q  L  K  K  L  C  L  E  V  T  V  Q  M  R  M  S  K  Q  C  S  *  R  Q  C  L  Q  L  F  S  F  V  N  A  H  K  M  G  N  L  T  I  S  P  N  G  S  E  L  K  C  T  *  Q  R  T  Y  *  S  R  *  C  N  E  *  Y  A  I  K  *  M  L  C  L  F  I  L  G  S </second_frame>
            <third_frame>   K  L  I  F  S  H  W  S  P  V  L  D  N  *  G  D  F  L  Q  L  Y  P  I  L  Q  I  Y  S  Y  P   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  L  E  R  K  E  G  S  *  D  A  *  S  V  P  E  V  E  T  G  F  H  A  *  R  N  S  L   : G  *  C  G  Q  *  S  R  N  R  Q  N  L  *  V  K  L  *  R  Q  A  W  E  A  S  S  C  H  E  T  S  L  P   : E  H  *  V  S  R  R  T  D  E  V  F  S  I  L  P  G  K  C  S  C  K  S  P  K  R  P  G  T  D  D  L  V  D  R  L  S  W  I  H  S  V  K  P  L  N  Q  G  D  K  R  N  S  S  Y  F  G  R  L  L  S  *  K  T  G  N  S  Y  F  I  *  S  T  Q  N  I  *  T  I  L  E   : A  S  K  A  F  F  G  P  K  D  C  E  Q  S  P  F  Y  V  L  R  *  P  Q  Q  Q  E  N  D  G  R  N  V  *  H  E  S  G  G  V  C  I  W  R  R  *  *  G  *  F  *  C  Q  *  I  C  *  E  D  E  R  R  *  *  K  V  V  F  F  L  E  E  R  R  *  F  C  I  K  C  T  T  Y  C  D  S  *  S  L  F  R  A  N  K  F  *  F  *  F  *  S  L  R  *  E  S  R  E  T  F  S  *  C  *  *  R  R  I  I  N  *  R  N  F  A  W  K  *  Q  Y  K  C  E  C  Q  S  S  V  A  K  G  N  V  F  N  F  L  V  L  *  M  L  T  R  W  A  I  *  P  F  L  Q  M  V  Q  N  *  S  V  L  S  R  E  H  I  N  Q  G  D  V  M  S  D  M  L  *  N  E  C  C  A  S  L  Y  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66854" stop="66937"/>
                    <exon start="69047" stop="69223"/>
                    <exon start="69665" stop="69763"/>
                    <exon start="70114" stop="70356"/>
                    <exon start="71474" stop="71884"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPIGVRFLTTEEIFFNFIQFFKFTVTQIDEMRKLIGPLSGKLALYCSDASISRYLAAQSWNVKKAAKMLKASLKWRLDFMPEEIRWDDVASEAETGKIYRSNYKDKHGRPVLVMRPRCQNTKSLEGQMKYLVYCLENAVVNLPKDQEQMIWLIDFHGFTLSNLSIKVTKETAHILEDYYPERLGIAILYDPPKIFEPFWKLAKPFLDPKTASKVHFMYSDDPNSKKMMEEMFDMSLVESAFGGDDKADFDVNKYAERMREDDEKLSSFWKKDDNSASNAQLTVTADPSLEPTNSDSDSEVLDEKVEKPSLDVDEEESSIEETLPGSNSTNANVKAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="66634" e_stop="66937"/>
            <exon e_start="68488" e_stop="68522"/>
            <exon e_start="68850" e_stop="68974"/>
            <exon e_start="69047" e_stop="69223"/>
            <exon e_start="69665" e_stop="69763"/>
            <exon e_start="70114" e_stop="70356"/>
            <exon e_start="71474" e_stop="72059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.645" e_score="1.000"/>
          <exon-intron don_prob="0.720" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66634" e_stop="66937" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.645">
            <gDNA_intron_boundary i_start="66938" i_stop="68487" i_length="1550"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68488" e_stop="68522" e_length="35"/>
          </exon>
          <intron i_serial="2" don_prob="0.720" acc_prob="0.809">
            <gDNA_intron_boundary i_start="68523" i_stop="68849" i_length="327"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68850" e_stop="68974" e_length="125"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69047" e_stop="69223" e_length="177"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69224" i_stop="69664" i_length="441"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69665" e_stop="69763" e_length="99"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69764" i_stop="70113" i_length="350"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70114" e_stop="70356" e_length="243"/>
          </exon>
          <intron i_serial="6" don_prob="0.962" acc_prob="0.985">
            <gDNA_intron_boundary i_start="70357" i_stop="71473" i_length="1117"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="71474" e_stop="72059" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66634" stop="66937"/>
              <exon start="68488" stop="68522"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69117" stop="69223"/>
              <exon start="69665" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69675" stop="69763"/>
              <exon start="70114" stop="70356"/>
              <exon start="71474" stop="71567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70236" stop="70356"/>
              <exon start="71474" stop="71849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71638" stop="72059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71697" stop="72057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACTTTTGAGGGACCAGAAGTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG : AATTTGCAATCCCATACAGTTGCTAATACGGGGAG : CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGG : GATGATGTGGCCAGTGAAGCAGAAACAGGCAAAATTTATAGGTCAAACTATAAAGACAAGCATGGGAGGCCAGTTCTTGTCATGAGACCTCGTTGCCAG : AACACTAAGTCTCTAGAAGGACAGATGAAGTATTTAGTATATTGCCTGGAAAATGCAGTTGTAAATCTCCCAAAAGACCAGGAACAGATGATTTGGTTGATCGACTTTCATGGATTCACTCTGTCAAACCTCTCAATCAAGGTGACAAAAGAAACAGCTCATATTTTGGAAGACTATTATCCTGAAAGACTGGGAATAGCTATTTTATATGATCCACCCAAAATATTTGAACCATTTTGGAAG : CTAGCAAAGCCTTTTTTGGACCCAAAGACTGCGAGCAAAGTCCATTTTATGTACTCAGATGACCCCAACAGCAAGAAAATGATGGAAGAAATGTTTGACATGAGTCTGGTGGAGTCTGCATTTGGCGGAGATGATAAGGCTGATTTTGATGTCAATAAATATGCTGAGAGGATGAGAGAAGATGATGAAAAGTTGTCTTCTTTCTGGAAGAAAGACGATAATTCTGCATCAAATGCACAACTTACTGTGACAGCTGATCCCTCTTTAGAGCCAACAAATTCTGATTCTGATTCTGAAGTCTTAGATGAGAAAGTAGAGAAACCTTCTCTTGATGTTGATGAAGAAGAATCATCAATTGAAGAAACTTTGCCTGGAAGTAACAGTACAAATGCGAATGTCAAAGCAGTGTAGCTAAAGGCAATGTCTTCAACTTTTTAGTTTTGTAAATGCTCACAAGATGGGCAATTTAACCATTTCTCCAAATGGTTCAGAACTGAAGTGTACTTAGCAGAGAACATATTAATCAAGGTGATGTAATGAGTGATATGCTATAAAATGAATGTTGTGCCTCTTTATACTAGGTAGT</gDNA_template>
            <first_frame> K  D  F  *  G  T  R  S  K  L  P  Y  L  F  A  G  S  D  F  D  H  F  V  L  C  R  H  Q  E  D  Y  L  Q  I  F  L  T  W  *  M  L  F  I  H  I  M  D  Y  F  P  L  Y  I  C  L  V  T  V  N  N  V  Q  *  P  F  F  F  Y  L  C  *  K  L  I  F  S  H  W  S  P  V  L  D  N  *  G  D  F  L  Q  L  Y  P  I  L  Q  I  Y  S  Y  P   : E  F  A  I  P  Y  S  C  *  Y  G  E  :  R  A  V  V  E  *  F  *  L  H  Q  *  N  S  L  K  L  *  V  L  V  *  Q  N  P  C  Q  M  A  W  R  I  L  *  N  R  K  K  N  G  T  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K  A  G  T  *  R  R  Q  L  R  C  L  K  R  P  *  S  G  D  W  I  S  C  L  K  K  F  A  G :   M  M  W  P  V  K  Q  K  Q  A  K  F  I  G  Q  T  I  K  T  S  M  G  G  Q  F  L  S  *  D  L  V  A  R :   T  L  S  L  *  K  D  R  *  S  I  *  Y  I  A  W  K  M  Q  L  *  I  S  Q  K  T  R  N  R  *  F  G  *  S  T  F  M  D  S  L  C  Q  T  S  Q  S  R  *  Q  K  K  Q  L  I  F  W  K  T  I  I  L  K  D  W  E  *  L  F  Y  M  I  H  P  K  Y  L  N  H  F  G  S :   *  Q  S  L  F  W  T  Q  R  L  R  A  K  S  I  L  C  T  Q  M  T  P  T  A  R  K  *  W  K  K  C  L  T  *  V  W  W  S  L  H  L  A  E  M  I  R  L  I  L  M  S  I  N  M  L  R  G  *  E  K  M  M  K  S  C  L  L  S  G  R  K  T  I  I  L  H  Q  M  H  N  L  L  *  Q  L  I  P  L  *  S  Q  Q  I  L  I  L  I  L  K  S  *  M  R  K  *  R  N  L  L  L  M  L  M  K  K  N  H  Q  L  K  K  L  C  L  E  V  T  V  Q  M  R  M  S  K  Q  C  S  *  R  Q  C  L  Q  L  F  S  F  V  N  A  H  K  M  G  N  L  T  I  S  P  N  G  S  E  L  K  C  T  *  Q  R  T  Y  *  S  R  *  C  N  E  *  Y  A  I  K  *  M  L  C  L  F  I  L  G  S </first_frame>
            <second_frame>  K  T  F  E  G  P  E  V  N  Y  L  T  C  L  L  V  Q  I  L  T  I  L  S  F  V  V  T  K  R  T  I  F  R  F  F  S  H  G  E  C  Y  S  Y  I  *  W  I  I  F  H  Y  I  Y  V  *  S  L  *  T  M  Y  N  N  L  F  F  F  I  S  A  K  S  *  S  S  P  I  G  V  R  F  L  T  T  E  E  I  F  F  N  F  I  Q  F  F  K  F  T  V  T  Q  :  N  L  Q  S  H  T  V  A  N  T  G  S :   V  Q  W  L  N  N  F  D  Y  T  S  E  I  P  *  N  Y  E  Y  *  C  N  K  I  H  A  K  W  L  G  E  F  F  E  T  G  R  R  T  E  Q   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  L  E  R  K  E  G  S  *  D  A  *  S  V  P  E  V  E  T  G  F  H  A  *  R  N  S  L   : G  *  C  G  Q  *  S  R  N  R  Q  N  L  *  V  K  L  *  R  Q  A  W  E  A  S  S  C  H  E  T  S  L  P   : E  H  *  V  S  R  R  T  D  E  V  F  S  I  L  P  G  K  C  S  C  K  S  P  K  R  P  G  T  D  D  L  V  D  R  L  S  W  I  H  S  V  K  P  L  N  Q  G  D  K  R  N  S  S  Y  F  G  R  L  L  S  *  K  T  G  N  S  Y  F  I  *  S  T  Q  N  I  *  T  I  L  E   : A  S  K  A  F  F  G  P  K  D  C  E  Q  S  P  F  Y  V  L  R  *  P  Q  Q  Q  E  N  D  G  R  N  V  *  H  E  S  G  G  V  C  I  W  R  R  *  *  G  *  F  *  C  Q  *  I  C  *  E  D  E  R  R  *  *  K  V  V  F  F  L  E  E  R  R  *  F  C  I  K  C  T  T  Y  C  D  S  *  S  L  F  R  A  N  K  F  *  F  *  F  *  S  L  R  *  E  S  R  E  T  F  S  *  C  *  *  R  R  I  I  N  *  R  N  F  A  W  K  *  Q  Y  K  C  E  C  Q  S  S  V  A  K  G  N  V  F  N  F  L  V  L  *  M  L  T  R  W  A  I  *  P  F  L  Q  M  V  Q  N  *  S  V  L  S  R  E  H  I  N  Q  G  D  V  M  S  D  M  L  *  N  E  C  C  A  S  L  Y  *  V   </second_frame>
            <third_frame>   R  L  L  R  D  Q  K  *  I  T  L  P  V  C  W  F  R  F  *  P  F  C  P  L  S  S  P  R  G  L  S  S  D  F  S  H  M  V  N  A  I  H  T  Y  N  G  L  F  S  I  I  Y  M  F  S  H  C  K  Q  C  T  I  T  F  F  F  L  S  L  L  K  A  D  L  L  P  L  E  S  G  S  *  Q  L  R  R  F  S  S  T  L  S  N  S  S  N  L  Q  L  P  R :   I  C  N  P  I  Q  L  L  I  R  G   : A  C  S  G  *  I  I  L  I  T  P  V  K  F  P  E  T  M  S  T  S  V  T  K  S  M  P  N  G  L  E  N  S  L  K  P  E  E  E  R  N  K  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S  W  N  V  K  K  A  A  K  M  L  K  A  S  L  K  W  R  L  D  F  M  P  E  E  I  R  W  :  D  D  V  A  S  E  A  E  T  G  K  I  Y  R  S  N  Y  K  D  K  H  G  R  P  V  L  V  M  R  P  R  C  Q  :  N  T  K  S  L  E  G  Q  M  K  Y  L  V  Y  C  L  E  N  A  V  V  N  L  P  K  D  Q  E  Q  M  I  W  L  I  D  F  H  G  F  T  L  S  N  L  S  I  K  V  T  K  E  T  A  H  I  L  E  D  Y  Y  P  E  R  L  G  I  A  I  L  Y  D  P  P  K  I  F  E  P  F  W  K  :  L  A  K  P  F  L  D  P  K  T  A  S  K  V  H  F  M  Y  S  D  D  P  N  S  K  K  M  M  E  E  M  F  D  M  S  L  V  E  S  A  F  G  G  D  D  K  A  D  F  D  V  N  K  Y  A  E  R  M  R  E  D  D  E  K  L  S  S  F  W  K  K  D  D  N  S  A  S  N  A  Q  L  T  V  T  A  D  P  S  L  E  P  T  N  S  D  S  D  S  E  V  L  D  E  K  V  E  K  P  S  L  D  V  D  E  E  E  S  S  I  E  E  T  L  P  G  S  N  S  T  N  A  N  V  K  A  V  *  L  K  A  M  S  S  T  F  *  F  C  K  C  S  Q  D  G  Q  F  N  H  F  S  K  W  F  R  T  E  V  Y  L  A  E  N  I  L  I  K  V  M  *  *  V  I  C  Y  K  M  N  V  V  P  L  Y  T  R  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68864" stop="68974"/>
                    <exon start="69047" stop="69223"/>
                    <exon start="69665" stop="69763"/>
                    <exon start="70114" stop="70356"/>
                    <exon start="71474" stop="71884"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1038</number_coding_nucleotides>
                  <number_encoded_amino_acids>346</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILITPVKFPETMSTSVTKSMPNGLENSLKPEEERNKIDEMRKLIGPLSGKLALYCSDASISRYLAAQSWNVKKAAKMLKASLKWRLDFMPEEIRWDDVASEAETGKIYRSNYKDKHGRPVLVMRPRCQNTKSLEGQMKYLVYCLENAVVNLPKDQEQMIWLIDFHGFTLSNLSIKVTKETAHILEDYYPERLGIAILYDPPKIFEPFWKLAKPFLDPKTASKVHFMYSDDPNSKKMMEEMFDMSLVESAFGGDDKADFDVNKYAERMREDDEKLSSFWKKDDNSASNAQLTVTADPSLEPTNSDSDSEVLDEKVEKPSLDVDEEESSIEETLPGSNSTNANVKAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="66656" e_stop="66937"/>
            <exon e_start="68850" e_stop="68974"/>
            <exon e_start="69047" e_stop="69232"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.809" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66656" e_stop="66937" e_length="282"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.809">
            <gDNA_intron_boundary i_start="66938" i_stop="68849" i_length="1912"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68850" e_stop="68974" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="68975" i_stop="69046" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="69047" e_stop="69232" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66656" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66719" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66828" stop="66937"/>
              <exon start="68850" stop="68974"/>
              <exon start="69047" stop="69232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAAATTACCTTACCTGTTTGCTGGTTCAGATTTTGACCATTTTGTCCTTTGTCGTCACCAAGAGGACTATCTTCAGATTTTTCTCACATGGTGAATGCTATTCATACATATAATGGATTATTTTCCATTATATATATGTTTAGTCACTGTAAACAATGTACAATAACCTTTTTTTTTTTATCTCTGCTAAAAGCTGATCTTCTCCCATTGGAGTCCGGTTCTTGACAACTGAGGAGATTTTCTTCAACTTTATCCAATTCTTCAAATTTACAGTTACCCAG : CGTGCAGTGGTTGAATAATTTTGATTACACCAGTGAAATTCCCTGAAACTATGAGTACTAGTGTAACAAAATCCATGCCAAATGGCTTGGAGAATTCTTTGAAACCGGAAGAAGAACGGAACAAG : ATTGATGAGATGAGAAAGTTGATTGGGCCACTTTCAGGTAAGTTGGCCCTTTACTGTTCTGATGCATCCATTTCAAGATATTTAGCAGCTCAAAGCTGGAACGTAAAGAAGGCAGCTAAGATGCTTAAAGCGTCCCTGAAGTGGAGACTGGATTTCATGCCTGAAGAAATTCGCTGGGTACTGTTA</gDNA_template>
            <first_frame> V  N  Y  L  T  C  L  L  V  Q  I  L  T  I  L  S  F  V  V  T  K  R  T  I  F  R  F  F  S  H  G  E  C  Y  S  Y  I  *  W  I  I  F  H  Y  I  Y  V  *  S  L  *  T  M  Y  N  N  L  F  F  F  I  S  A  K  S  *  S  S  P  I  G  V  R  F  L  T  T  E  E  I  F  F  N  F  I  Q  F  F  K  F  T  V  T  Q  :  R  A  V  V  E  *  F  *  L  H  Q  *  N  S  L  K  L  *  V  L  V  *  Q  N  P  C  Q  M  A  W  R  I  L  *  N  R  K  K  N  G  T  R :   L  M  R  *  E  S  *  L  G  H  F  Q  V  S  W  P  F  T  V  L  M  H  P  F  Q  D  I  *  Q  L  K  A  G  T  *  R  R  Q  L  R  C  L  K  R  P  *  S  G  D  W  I  S  C  L  K  K  F  A  G  Y  C   </first_frame>
            <second_frame>  *  I  T  L  P  V  C  W  F  R  F  *  P  F  C  P  L  S  S  P  R  G  L  S  S  D  F  S  H  M  V  N  A  I  H  T  Y  N  G  L  F  S  I  I  Y  M  F  S  H  C  K  Q  C  T  I  T  F  F  F  L  S  L  L  K  A  D  L  L  P  L  E  S  G  S  *  Q  L  R  R  F  S  S  T  L  S  N  S  S  N  L  Q  L  P  S :   V  Q  W  L  N  N  F  D  Y  T  S  E  I  P  *  N  Y  E  Y  *  C  N  K  I  H  A  K  W  L  G  E  F  F  E  T  G  R  R  T  E  Q   : D  *  *  D  E  K  V  D  W  A  T  F  R  *  V  G  P  L  L  F  *  C  I  H  F  K  I  F  S  S  S  K  L  E  R  K  E  G  S  *  D  A  *  S  V  P  E  V  E  T  G  F  H  A  *  R  N  S  L  G  T  V  </second_frame>
            <third_frame>   K  L  P  Y  L  F  A  G  S  D  F  D  H  F  V  L  C  R  H  Q  E  D  Y  L  Q  I  F  L  T  W  *  M  L  F  I  H  I  M  D  Y  F  P  L  Y  I  C  L  V  T  V  N  N  V  Q  *  P  F  F  F  Y  L  C  *  K  L  I  F  S  H  W  S  P  V  L  D  N  *  G  D  F  L  Q  L  Y  P  I  L  Q  I  Y  S  Y  P   : A  C  S  G  *  I  I  L  I  T  P  V  K  F  P  E  T  M  S  T  S  V  T  K  S  M  P  N  G  L  E  N  S  L  K  P  E  E  E  R  N  K  :  I  D  E  M  R  K  L  I  G  P  L  S  G  K  L  A  L  Y  C  S  D  A  S  I  S  R  Y  L  A  A  Q  S  W  N  V  K  K  A  A  K  M  L  K  A  S  L  K  W  R  L  D  F  M  P  E  E  I  R  W  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68864" stop="68974"/>
                    <exon start="69047" stop="69232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILITPVKFPETMSTSVTKSMPNGLENSLKPEEERNKIDEMRKLIGPLSGKLALYCSDASISRYLAAQSWNVKKAAKMLKASLKWRLDFMPEEIRWVLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="67653" PGL_stop="67107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67653" e_stop="67107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="67653" e_stop="67107" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67653" stop="67107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319199" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAGAGAAGCTTTGAGGAGGAAAAATGTGTTAATGCCTAACATGATTTCCTGTTCGCATTCCCAGACGGTGCAACAGGTAAATGTAAACACGGAAATATTGCAATGTCCACTTAGCTGTTAAGGAACAATATAAACCTAGATTAATGGTTTAGCTGCAAGAGATCGAAACAACATTTAAAATCTATCAAGCTCTTCTTCATTTCAACTATCAGAAAGGAACTTGTTATTGATGAAATGATAGTCATCAATCATCATCCATTAAATCAGTTCGCTCAAACACGAGTAGCAACTTTAGGTAATATTCGAAGTGCACATCCTCATTTCAGTGATTCTTATCCCCAAAAAAACAGCACTTCACTTTTTCTACCAAAACCAAGACCAAACCTTGTAATTGAAAACTTCCAATTGCACAAACTTTCCAGTAGACAGTGCAAACATCAACAAGTTACCCTCTTTAAGGGGTTTTAACATAATTTTAAGTCCAATTGTCCAAATCATCACACCACATAAGCTTATTTAGCTTGCTAACTAACTAACTCATGAT</gDNA_template>
            <first_frame> T  K  R  S  F  E  E  E  K  C  V  N  A  *  H  D  F  L  F  A  F  P  D  G  A  T  G  K  C  K  H  G  N  I  A  M  S  T  *  L  L  R  N  N  I  N  L  D  *  W  F  S  C  K  R  S  K  Q  H  L  K  S  I  K  L  F  F  I  S  T  I  R  K  E  L  V  I  D  E  M  I  V  I  N  H  H  P  L  N  Q  F  A  Q  T  R  V  A  T  L  G  N  I  R  S  A  H  P  H  F  S  D  S  Y  P  Q  K  N  S  T  S  L  F  L  P  K  P  R  P  N  L  V  I  E  N  F  Q  L  H  K  L  S  S  R  Q  C  K  H  Q  Q  V  T  L  F  K  G  F  *  H  N  F  K  S  N  C  P  N  H  H  T  T  *  A  Y  L  A  C  *  L  T  N  S  *  </first_frame>
            <second_frame>  L  R  E  A  L  R  R  K  N  V  L  M  P  N  M  I  S  C  S  H  S  Q  T  V  Q  Q  V  N  V  N  T  E  I  L  Q  C  P  L  S  C  *  G  T  I  *  T  *  I  N  G  L  A  A  R  D  R  N  N  I  *  N  L  S  S  S  S  S  F  Q  L  S  E  R  N  L  L  L  M  K  *  *  S  S  I  I  I  H  *  I  S  S  L  K  H  E  *  Q  L  *  V  I  F  E  V  H  I  L  I  S  V  I  L  I  P  K  K  T  A  L  H  F  F  Y  Q  N  Q  D  Q  T  L  *  L  K  T  S  N  C  T  N  F  P  V  D  S  A  N  I  N  K  L  P  S  L  R  G  F  N  I  I  L  S  P  I  V  Q  I  I  T  P  H  K  L  I  *  L  A  N  *  L  T  H  D </second_frame>
            <third_frame>   *  E  K  L  *  G  G  K  M  C  *  C  L  T  *  F  P  V  R  I  P  R  R  C  N  R  *  M  *  T  R  K  Y  C  N  V  H  L  A  V  K  E  Q  Y  K  P  R  L  M  V  *  L  Q  E  I  E  T  T  F  K  I  Y  Q  A  L  L  H  F  N  Y  Q  K  G  T  C  Y  *  *  N  D  S  H  Q  S  S  S  I  K  S  V  R  S  N  T  S  S  N  F  R  *  Y  S  K  C  T  S  S  F  Q  *  F  L  S  P  K  K  Q  H  F  T  F  S  T  K  T  K  T  K  P  C  N  *  K  L  P  I  A  Q  T  F  Q  *  T  V  Q  T  S  T  S  Y  P  L  *  G  V  L  T  *  F  *  V  Q  L  S  K  S  S  H  H  I  S  L  F  S  L  L  T  N  *  L  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67506" stop="67183"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WFSCKRSKQHLKSIKLFFISTIRKELVIDEMIVINHHPLNQFAQTRVATLGNIRSAHPHFSDSYPQKNSTSLFLPKPRPNLVIENFQLHKLSSRQCKHQQVTLFKGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71942" PGL_stop="70393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71942" e_stop="71455"/>
            <exon e_start="70428" e_stop="70393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71942" e_stop="71455" e_length="488"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71454" i_stop="70429" i_length="1026"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="70428" e_stop="70393" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71942" stop="71455"/>
              <exon start="70428" stop="70393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341380" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATTGCCCATCTTGTGAGCATTTACAAAACTAAAAAGTTGAAGACATTGCCTTTAGCTACACTGCTTTGACATTCGCATTTGTACTGTTACTTCCAGGCAAAGTTTCTTCAATTGATGATTCTTCTTCATCAACATCAAGAGAAGGTTTCTCTACTTTCTCATCTAAGACTTCAGAATCAGAATCAGAATTTGTTGGCTCTAAAGAGGGATCAGCTGTCACAGTAAGTTGTGCATTTGATGCAGAATTATCGTCTTTCTTCCAGAAAGAAGACAACTTTTCATCATCTTCTCTCATCCTCTCAGCATATTTATTGACATCAAAATCAGCCTTATCATCTCCGCCAAATGCAGACTCCACCAGACTCATGTCAAACATTTCTTCCATCATTTTCTTGCTGTTGGGGTCATCTGAGTACATAAAATGGACTTTGCTCGCAGTCTTTGGGTCCAAAAAAGGCTTTGCTAGCTGCACCATTTAGATAAAC : AAATAGAATCCTGTAGTGTAACATTCACAAAATTAA</gDNA_template>
            <first_frame> *  I  A  H  L  V  S  I  Y  K  T  K  K  L  K  T  L  P  L  A  T  L  L  *  H  S  H  L  Y  C  Y  F  Q  A  K  F  L  Q  L  M  I  L  L  H  Q  H  Q  E  K  V  S  L  L  S  H  L  R  L  Q  N  Q  N  Q  N  L  L  A  L  K  R  D  Q  L  S  Q  *  V  V  H  L  M  Q  N  Y  R  L  S  S  R  K  K  T  T  F  H  H  L  L  S  S  S  Q  H  I  Y  *  H  Q  N  Q  P  Y  H  L  R  Q  M  Q  T  P  P  D  S  C  Q  T  F  L  P  S  F  S  C  C  W  G  H  L  S  T  *  N  G  L  C  S  Q  S  L  G  P  K  K  A  L  L  A  A  P  F  R  *  T :   N  R  I  L  *  C  N  I  H  K  I   </first_frame>
            <second_frame>  K  L  P  I  L  *  A  F  T  K  L  K  S  *  R  H  C  L  *  L  H  C  F  D  I  R  I  C  T  V  T  S  R  Q  S  F  F  N  *  *  F  F  F  I  N  I  K  R  R  F  L  Y  F  L  I  *  D  F  R  I  R  I  R  I  C  W  L  *  R  G  I  S  C  H  S  K  L  C  I  *  C  R  I  I  V  F  L  P  E  R  R  Q  L  F  I  I  F  S  H  P  L  S  I  F  I  D  I  K  I  S  L  I  I  S  A  K  C  R  L  H  Q  T  H  V  K  H  F  F  H  H  F  L  A  V  G  V  I  *  V  H  K  M  D  F  A  R  S  L  W  V  Q  K  R  L  C  *  L  H  H  L  D  K   : Q  I  E  S  C  S  V  T  F  T  K  L  </second_frame>
            <third_frame>   N  C  P  S  C  E  H  L  Q  N  *  K  V  E  D  I  A  F  S  Y  T  A  L  T  F  A  F  V  L  L  L  P  G  K  V  S  S  I  D  D  S  S  S  S  T  S  R  E  G  F  S  T  F  S  S  K  T  S  E  S  E  S  E  F  V  G  S  K  E  G  S  A  V  T  V  S  C  A  F  D  A  E  L  S  S  F  F  Q  K  E  D  N  F  S  S  S  S  L  I  L  S  A  Y  L  L  T  S  K  S  A  L  S  S  P  P  N  A  D  S  T  R  L  M  S  N  I  S  S  I  I  F  L  L  L  G  S  S  E  Y  I  K  W  T  L  L  A  V  F  G  S  K  K  G  F  A  S  C  T  I  *  I  N  :  K  *  N  P  V  V  *  H  S  Q  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71907" stop="71461"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVEDIAFSYTALTFAFVLLLPGKVSSIDDSSSSTSREGFSTFSSKTSESESEFVGSKEGSAVTVSCAFDAELSSFFQKEDNFSSSSLILSAYLLTSKSALSSPPNADSTRLMSNISSIIFLLLGSSEYIKWTLLAVFGSKKGFASCTI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="75903" PGL_stop="72283"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75903" e_stop="75576"/>
            <exon e_start="75023" e_stop="74752"/>
            <exon e_start="74542" e_stop="74371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.389" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75903" e_stop="75576" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.951">
            <gDNA_intron_boundary i_start="75575" i_stop="75024" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75023" e_stop="74752" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.389">
            <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="74542" e_stop="74371" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75903" stop="75576"/>
              <exon start="75023" stop="74888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75894" stop="75576"/>
              <exon start="75023" stop="74752"/>
              <exon start="74542" stop="74371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75893" stop="75576"/>
              <exon start="75023" stop="74888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75891" stop="75576"/>
              <exon start="75023" stop="74752"/>
              <exon start="74542" stop="74534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75891" stop="75576"/>
              <exon start="75023" stop="74829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256451" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATACACACTTTCTTGGAGAAATTTTTTTCAAGAAAACGATTTCTACTAAGCATCCCATCATTTCCCCCTCTTAATCTTGATTTGTCAGACACATTTTACCCTATAAAGACTCAATCTTTATACCATTTGATGCATGTAATGTGCCATCTTCTTCTCCGCCAACTTTTCTTGATATAAACTCAACACCCTTTTTCGTTTTCCCCCATTTAACCGCACCAAAAGAAAAAGGGGGAAAAACAAGATTTTTCTTGGATAGCATCGTTCCCATTTTTCTTGCTTTGGTTTCTTCGCCAACTTGCAAGCATCGTTTGGCTGTATAAATAAGC : AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAA : GTGAAGCTGCTTTGATCCTGATTAGACACGGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAGGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGAT</gDNA_template>
            <first_frame> I  Y  T  L  S  W  R  N  F  F  Q  E  N  D  F  Y  *  A  S  H  H  F  P  L  L  I  L  I  C  Q  T  H  F  T  L  *  R  L  N  L  Y  T  I  *  C  M  *  C  A  I  F  F  S  A  N  F  S  *  Y  K  L  N  T  L  F  R  F  P  P  F  N  R  T  K  R  K  R  G  K  N  K  I  F  L  G  *  H  R  S  H  F  S  C  F  G  F  F  A  N  L  Q  A  S  F  G  C  I  N  K   : Q  W  L  Q  R  H  L  T  N  R  L  E  L  F  G  L  V  E  *  M  V  T  L  D  C  V  L  I  M  G  M  F  P  L  D  R  C  P  R  V  S  R  L  M  W  D  C  *  E  E  E  V  F  V  L  E  R  Q  V  L  V  *  F  K  P  L  L  L  K  L  R  C  S  M  K  L  Q  H  H  L  V  P  P  P  V  T  P  T  R  K  Q  :  V  K  L  L  *  S  *  L  D  T  V  S  L  C  G  T  K  K  T  C  S  L  V  V  *  M  C  L  *  L  I  R  A  W  K  R  P  L  K  L  G  N  E  L  V  I  Y  L  S  T  *  S  I  L  L  L  *  </first_frame>
            <second_frame>  Y  T  H  F  L  G  E  I  F  F  K  K  T  I  S  T  K  H  P  I  I  S  P  S  *  S  *  F  V  R  H  I  L  P  Y  K  D  S  I  F  I  P  F  D  A  C  N  V  P  S  S  S  P  P  T  F  L  D  I  N  S  T  P  F  F  V  F  P  H  L  T  A  P  K  E  K  G  G  K  T  R  F  F  L  D  S  I  V  P  I  F  L  A  L  V  S  S  P  T  C  K  H  R  L  A  V  *  I  S  :  N  G  C  N  D  T  *  P  I  G  W  N  S  S  V  L  *  S  K  W  *  L  W  I  V  S  *  L  W  A  C  F  L  *  T  G  V  Q  G  F  Q  G  *  C  G  I  V  E  R  R  K  F  L  F  *  K  D  K  Y  L  C  N  S  S  L  C  F  S  S  Y  G  V  R  *  S  F  S  T  I  *  C  H  H  Q  *  L  Q  Q  E  N  K :   *  S  C  F  D  P  D  *  T  R  *  V  Y  V  E  R  K  K  L  V  H  W  L  C  R  C  A  F  D  *  *  G  R  G  R  G  R  *  S  W  E  T  N  *  *  Y  T  C  R  H  D  L  Y  F  C  F  D </second_frame>
            <third_frame>   I  H  T  F  L  E  K  F  F  S  R  K  R  F  L  L  S  I  P  S  F  P  P  L  N  L  D  L  S  D  T  F  Y  P  I  K  T  Q  S  L  Y  H  L  M  H  V  M  C  H  L  L  L  R  Q  L  F  L  I  *  T  Q  H  P  F  S  F  S  P  I  *  P  H  Q  K  K  K  G  E  K  Q  D  F  S  W  I  A  S  F  P  F  F  L  L  W  F  L  R  Q  L  A  S  I  V  W  L  Y  K  *  A :   M  A  A  T  T  L  N  Q  S  V  G  T  L  R  S  C  R  V  N  G  N  S  G  L  C  P  D  Y  G  H  V  S  F  R  P  V  S  K  G  F  K  V  D  V  G  L  L  R  G  G  S  F  C  S  R  K  T  S  T  C  V  I  Q  A  S  A  S  Q  A  T  V  F  D  E  A  S  A  P  S  S  A  T  T  S  D  S  N  K  K  T   : S  E  A  A  L  I  L  I  R  H  G  E  S  M  W  N  E  K  N  L  F  T  G  C  V  D  V  P  L  T  N  K  G  V  E  E  A  V  E  A  G  K  R  I  S  N  I  P  V  D  M  I  Y  T  S  A  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75577" stop="75576"/>
                    <exon start="75023" stop="74752"/>
                    <exon start="74542" stop="74373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AMAATTLNQSVGTLRSCRVNGNSGLCPDYGHVSFRPVSKGFKVDVGLLRGGSFCSRKTSTCVIQASASQATVFDEASAPSSATTSDSNKKTSEAALILIRHGESMWNEKNLFTGCVDVPLTNKGVEEAVEAGKRISNIPVDMIYTSAL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75821" stop="75582"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVRHILPYKDSIFIPFDACNVPSSSPPTFLDINSTPFFVFPHLTAPKEKGGKTRFFLDSIVPIFLALVSSPTCKHRLAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75538" e_stop="75497"/>
            <exon e_start="75023" e_stop="74752"/>
            <exon e_start="74542" e_stop="74319"/>
            <exon e_start="74058" e_stop="73940"/>
            <exon e_start="73850" e_stop="73694"/>
            <exon e_start="73608" e_stop="73507"/>
            <exon e_start="73416" e_stop="73297"/>
            <exon e_start="72722" e_stop="72669"/>
            <exon e_start="72584" e_stop="72283"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="0.976"/>
          <exon-intron don_prob="0.996" acc_prob="0.389" e_score="0.934"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.978"/>
          <exon-intron don_prob="0.881" acc_prob="1.000" e_score="0.975"/>
          <exon-intron don_prob="0.644" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="75538" e_stop="75497" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="75496" i_stop="75024" i_length="473"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="75023" e_stop="74752" e_length="272"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.389">
            <gDNA_intron_boundary i_start="74751" i_stop="74543" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="74542" e_stop="74319" e_length="224"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74318" i_stop="74059" i_length="260"/>
          </intron>
          <exon e_serial="4" e_score="0.975">
            <gDNA_exon_boundary e_start="74058" e_stop="73940" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.881" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73939" i_stop="73851" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="73850" e_stop="73694" e_length="157"/>
          </exon>
          <intron i_serial="5" don_prob="0.644" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73693" i_stop="73609" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73608" e_stop="73507" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.923" acc_prob="0.967">
            <gDNA_intron_boundary i_start="73506" i_stop="73417" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73416" e_stop="73297" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73296" i_stop="72723" i_length="574"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72722" e_stop="72669" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="72668" i_stop="72585" i_length="84"/>
          </intron>
          <exon e_serial="9" e_score="0.970">
            <gDNA_exon_boundary e_start="72584" e_stop="72283" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75538" stop="75497"/>
              <exon start="75023" stop="74752"/>
              <exon start="74542" stop="74319"/>
              <exon start="74058" stop="73940"/>
              <exon start="73850" stop="73762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73779" stop="73694"/>
              <exon start="73608" stop="73507"/>
              <exon start="73416" stop="73297"/>
              <exon start="72722" stop="72669"/>
              <exon start="72584" stop="72552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73550" stop="73507"/>
              <exon start="73416" stop="73297"/>
              <exon start="72722" stop="72669"/>
              <exon start="72584" stop="72296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73360" stop="73297"/>
              <exon start="72722" stop="72669"/>
              <exon start="72584" stop="72283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73356" stop="73297"/>
              <exon start="72722" stop="72669"/>
              <exon start="72584" stop="72283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694523" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGCTGTTGATCTTAACTGGGTTTTCTTTTTCTTGGTTAT : AATGGCTGCAACGACACTTAACCAATCGGTTGGAACTCTTCGGTCTTGTAGAGTAAATGGTAACTCTGGATTGTGTCCTGATTATGGGCATGTTTCCTTTAGACCGGTGTCCAAGGGTTTCAAGGTTGATGTGGGATTGTTGAGAGGAGGAAGTTTTTGTTCTAGAAAGACAAGTACTTGTGTAATTCAAGCCTCTGCTTCTCAAGCTACGGTGTTCGATGAAGCTTCAGCACCATCTAGTGCCACCACCAGTGACTCCAACAAGAAAACAA : GTGAAGCTGCTTTGATCCTGATTAGACACGGTGAGTCTATGTGGAACGAAAAAAACTTGTTCACTGGTTGTGTAGATGTGCCTTTGACTAATAAGGGCGTGGAAGAGGCCGTTGAAGCTGGGAAACGAATTAGTAATATACCTGTCGACATGATCTATACTTCTGCTTTGATTCGTGCTCAAATGACTGCCATGCTTGCCATGACTCAGCACCGCCGCAAGAAG : GTGCCAACTATCATTCATGAAGAGAGTGAACAAGCAGGAGCTTGGAGTCAGATCTTTAGTGAAGATACCAGCATGCAATGTATACCAGTTGTAACTGCTTGGCAACTAAATGAGAGAAT : GTATGGGGAATTACAAGGTCTTAATAAGCAGGAAACAGCTGATAAATATGGAAGTGAGCAGGTTCATGAGTGGCGTCGTAGCTATGATATTCCTCCTCCGAACGGAGAAAGTTTGGAAATGTGTGCAGAGAGAGCTGTTGCCTACTTCACAGAGCAC : ATTGAACCCCAACTGGCAAGTGGAAAAAATATAATGATTGCAGCCCATGGGAACTCATTGAGGTCCATCATTATGTATCTTGACAAGCTAACATCCCAAGAG : GTTATAAGTTTGGAGCTTGCCACTGGAATCCCCATGCTTTACATATTCAAAGAAGGAAGGTATATTCGCAGAGGAAGTCCTCCAGCCCCAACTGAGGCAACAGTCTATGCTTATACAAAG : AAATTGGCTCAGTACAGACAAAAGCTAGATGATATGTTTGAGTAACGTGACAAG : GGGTTTGCTTTCAGTTGAAGTAGATTTGATATGCCTCTTGAAGACTAGTTTCTCTTGCAAATGGGAGTGATTTGTTTTTTCGTTTACTGTAGTCTTCTCATAGATAGGCCAAACAAACTCGGCCACTTTTTCATAAATGTTGTTCTATATGTGTTGATACTGTGAATTGTAATGTAGAATATTTTTTGGTTTTGATCAGTATTTGTAGACACATTAAAGAGAATGAGCCTACTAGTGTTTTTGTTCATCTATACAGCTTATAAATAAGGCAATGTAGAATATCCACGGGGTTTCTTTTCTCA</gDNA_template>
            <first_frame> F  C  C  *  S  *  L  G  F  L  F  L  G  Y  :  N  G  C  N  D  T  *  P  I  G  W  N  S  S  V  L  *  S  K  W  *  L  W  I  V  S  *  L  W  A  C  F  L  *  T  G  V  Q  G  F  Q  G  *  C  G  I  V  E  R  R  K  F  L  F  *  K  D  K  Y  L  C  N  S  S  L  C  F  S  S  Y  G  V  R  *  S  F  S  T  I  *  C  H  H  Q  *  L  Q  Q  E  N  K :   *  S  C  F  D  P  D  *  T  R  *  V  Y  V  E  R  K  K  L  V  H  W  L  C  R  C  A  F  D  *  *  G  R  G  R  G  R  *  S  W  E  T  N  *  *  Y  T  C  R  H  D  L  Y  F  C  F  D  S  C  S  N  D  C  H  A  C  H  D  S  A  P  P  Q  E   : G  A  N  Y  H  S  *  R  E  *  T  S  R  S  L  E  S  D  L  *  *  R  Y  Q  H  A  M  Y  T  S  C  N  C  L  A  T  K  *  E  N  :  V  W  G  I  T  R  S  *  *  A  G  N  S  *  *  I  W  K  *  A  G  S  *  V  A  S  *  L  *  Y  S  S  S  E  R  R  K  F  G  N  V  C  R  E  S  C  C  L  L  H  R  A   : H  *  T  P  T  G  K  W  K  K  Y  N  D  C  S  P  W  E  L  I  E  V  H  H  Y  V  S  *  Q  A  N  I  P  R   : G  Y  K  F  G  A  C  H  W  N  P  H  A  L  H  I  Q  R  R  K  V  Y  S  Q  R  K  S  S  S  P  N  *  G  N  S  L  C  L  Y  K   : E  I  G  S  V  Q  T  K  A  R  *  Y  V  *  V  T  *  Q   : G  V  C  F  Q  L  K  *  I  *  Y  A  S  *  R  L  V  S  L  A  N  G  S  D  L  F  F  R  L  L  *  S  S  H  R  *  A  K  Q  T  R  P  L  F  H  K  C  C  S  I  C  V  D  T  V  N  C  N  V  E  Y  F  L  V  L  I  S  I  C  R  H  I  K  E  N  E  P  T  S  V  F  V  H  L  Y  S  L  *  I  R  Q  C  R  I  S  T  G  F  L  F  S </first_frame>
            <second_frame>  S  A  V  D  L  N  W  V  F  F  F  L  V  I :   M  A  A  T  T  L  N  Q  S  V  G  T  L  R  S  C  R  V  N  G  N  S  G  L  C  P  D  Y  G  H  V  S  F  R  P  V  S  K  G  F  K  V  D  V  G  L  L  R  G  G  S  F  C  S  R  K  T  S  T  C  V  I  Q  A  S  A  S  Q  A  T  V  F  D  E  A  S  A  P  S  S  A  T  T  S  D  S  N  K  K  T   : S  E  A  A  L  I  L  I  R  H  G  E  S  M  W  N  E  K  N  L  F  T  G  C  V  D  V  P  L  T  N  K  G  V  E  E  A  V  E  A  G  K  R  I  S  N  I  P  V  D  M  I  Y  T  S  A  L  I  R  A  Q  M  T  A  M  L  A  M  T  Q  H  R  R  K  K  :  V  P  T  I  I  H  E  E  S  E  Q  A  G  A  W  S  Q  I  F  S  E  D  T  S  M  Q  C  I  P  V  V  T  A  W  Q  L  N  E  R  M :   Y  G  E  L  Q  G  L  N  K  Q  E  T  A  D  K  Y  G  S  E  Q  V  H  E  W  R  R  S  Y  D  I  P  P  P  N  G  E  S  L  E  M  C  A  E  R  A  V  A  Y  F  T  E  H  :  I  E  P  Q  L  A  S  G  K  N  I  M  I  A  A  H  G  N  S  L  R  S  I  I  M  Y  L  D  K  L  T  S  Q  E  :  V  I  S  L  E  L  A  T  G  I  P  M  L  Y  I  F  K  E  G  R  Y  I  R  R  G  S  P  P  A  P  T  E  A  T  V  Y  A  Y  T  K  :  K  L  A  Q  Y  R  Q  K  L  D  D  M  F  E  *  R  D  K  :  G  F  A  F  S  *  S  R  F  D  M  P  L  E  D  *  F  L  L  Q  M  G  V  I  C  F  F  V  Y  C  S  L  L  I  D  R  P  N  K  L  G  H  F  F  I  N  V  V  L  Y  V  L  I  L  *  I  V  M  *  N  I  F  W  F  *  S  V  F  V  D  T  L  K  R  M  S  L  L  V  F  L  F  I  Y  T  A  Y  K  *  G  N  V  E  Y  P  R  G  F  F  S   </second_frame>
            <third_frame>   L  L  L  I  L  T  G  F  S  F  S  W  L   : *  W  L  Q  R  H  L  T  N  R  L  E  L  F  G  L  V  E  *  M  V  T  L  D  C  V  L  I  M  G  M  F  P  L  D  R  C  P  R  V  S  R  L  M  W  D  C  *  E  E  E  V  F  V  L  E  R  Q  V  L  V  *  F  K  P  L  L  L  K  L  R  C  S  M  K  L  Q  H  H  L  V  P  P  P  V  T  P  T  R  K  Q  :  V  K  L  L  *  S  *  L  D  T  V  S  L  C  G  T  K  K  T  C  S  L  V  V  *  M  C  L  *  L  I  R  A  W  K  R  P  L  K  L  G  N  E  L  V  I  Y  L  S  T  *  S  I  L  L  L  *  F  V  L  K  *  L  P  C  L  P  *  L  S  T  A  A  R  R :   C  Q  L  S  F  M  K  R  V  N  K  Q  E  L  G  V  R  S  L  V  K  I  P  A  C  N  V  Y  Q  L  *  L  L  G  N  *  M  R  E   : C  M  G  N  Y  K  V  L  I  S  R  K  Q  L  I  N  M  E  V  S  R  F  M  S  G  V  V  A  M  I  F  L  L  R  T  E  K  V  W  K  C  V  Q  R  E  L  L  P  T  S  Q  S  T :   L  N  P  N  W  Q  V  E  K  I  *  *  L  Q  P  M  G  T  H  *  G  P  S  L  C  I  L  T  S  *  H  P  K  R :   L  *  V  W  S  L  P  L  E  S  P  C  F  T  Y  S  K  K  E  G  I  F  A  E  E  V  L  Q  P  Q  L  R  Q  Q  S  M  L  I  Q  R :   N  W  L  S  T  D  K  S  *  M  I  C  L  S  N  V  T  R :   G  L  L  S  V  E  V  D  L  I  C  L  L  K  T  S  F  S  C  K  W  E  *  F  V  F  S  F  T  V  V  F  S  *  I  G  Q  T  N  S  A  T  F  S  *  M  L  F  Y  M  C  *  Y  C  E  L  *  C  R  I  F  F  G  F  D  Q  Y  L  *  T  H  *  R  E  *  A  Y  *  C  F  C  S  S  I  Q  L  I  N  K  A  M  *  N  I  H  G  V  S  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75537" stop="75497"/>
                    <exon start="75023" stop="74752"/>
                    <exon start="74542" stop="74319"/>
                    <exon start="74058" stop="73940"/>
                    <exon start="73850" stop="73694"/>
                    <exon start="73608" stop="73507"/>
                    <exon start="73416" stop="73297"/>
                    <exon start="72722" stop="72678"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1077</number_coding_nucleotides>
                  <number_encoded_amino_acids>359</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAVDLNWVFFFLVIMAATTLNQSVGTLRSCRVNGNSGLCPDYGHVSFRPVSKGFKVDVGLLRGGSFCSRKTSTCVIQASASQATVFDEASAPSSATTSDSNKKTSEAALILIRHGESMWNEKNLFTGCVDVPLTNKGVEEAVEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRKKVPTIIHEESEQAGAWSQIFSEDTSMQCIPVVTAWQLNERMYGELQGLNKQETADKYGSEQVHEWRRSYDIPPPNGESLEMCAERAVAYFTEHIEPQLASGKNIMIAAHGNSLRSIIMYLDKLTSQEVISLELATGIPMLYIFKEGRYIRRGSPPAPTEATVYAYTKKLAQYRQKLDDMFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="90552" PGL_stop="91617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90552" e_stop="90568"/>
            <exon e_start="91158" e_stop="91617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="0.647"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.647">
            <gDNA_exon_boundary e_start="90552" e_stop="90568" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90569" i_stop="91157" i_length="589"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="91158" e_stop="91617" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90552" stop="90568"/>
              <exon start="91158" stop="91617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734430" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTGATTTGTTTAT : ATAGTACTAGTAGAAGTAATTAAAATGGCTGCATACAAATTATTAACTGAAACCTTGCAAAACTCAGCCCAGAATTTCTTTTTGTAGAGAGAGAAATATATTTATATCATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGCTTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATTTCCACTACCTAAACGGCGGCGACAGTCTCGCTTGTGGCGGAAACGTCAGATCCCTTCCCGCCGGCTACGGCGGCAGCGACGGAGTTCTTCATGTAGTCCTTTCTAGATGCAACCAACGAACACTTGTCCTTCTTCTCATCTAGATTCATCTGCTGCTGTCTACACTCTAGACTGCAAAAAGCAC</gDNA_template>
            <first_frame> L  V  D  L  F  I :   *  Y  *  *  K  *  L  K  W  L  H  T  N  Y  *  L  K  P  C  K  T  Q  P  R  I  S  F  C  R  E  R  N  I  F  I  S  S  S  S  S  F  I  M  Q  I  L  L  L  T  T  C  I  Y  I  Y  I  L  Y  S  S  F  D  M  H  F  F  G  V  C  V  G  N  V  L  I  N  H  I  T  F  D  S  *  S  I  H  G  V  Y  *  K  F  P  L  P  K  R  R  R  Q  S  R  L  W  R  K  R  Q  I  P  S  R  R  L  R  R  Q  R  R  S  S  S  C  S  P  F  *  M  Q  P  T  N  T  C  P  S  S  H  L  D  S  S  A  A  V  Y  T  L  D  C  K  K  H </first_frame>
            <second_frame>  L  L  I  C  L   : Y  S  T  S  R  S  N  *  N  G  C  I  Q  I  I  N  *  N  L  A  K  L  S  P  E  F  L  F  V  E  R  E  I  Y  L  Y  H  H  H  H  H  S  S  C  R  S  Y  S  *  Q  H  V  Y  T  Y  T  Y  Y  I  A  A  L  I  C  I  F  L  V  C  V  W  V  T  Y  *  L  T  T  S  R  L  I  H  D  P  Y  M  A  S  T  K  N  F  H  Y  L  N  G  G  D  S  L  A  C  G  G  N  V  R  S  L  P  A  G  Y  G  G  S  D  G  V  L  H  V  V  L  S  R  C  N  Q  R  T  L  V  L  L  L  I  *  I  H  L  L  L  S  T  L  *  T  A  K  S   </second_frame>
            <third_frame>   C  *  F  V  Y  :  I  V  L  V  E  V  I  K  M  A  A  Y  K  L  L  T  E  T  L  Q  N  S  A  Q  N  F  F  L  *  R  E  K  Y  I  Y  I  I  I  I  I  I  H  H  A  D  L  T  L  N  N  M  Y  I  H  I  H  I  I  *  Q  L  *  Y  A  F  F  W  C  V  C  G  *  R  T  D  *  P  H  H  V  *  F  M  I  H  T  W  R  L  L  K  I  S  T  T  *  T  A  A  T  V  S  L  V  A  E  T  S  D  P  F  P  P  A  T  A  A  A  T  E  F  F  M  *  S  F  L  D  A  T  N  E  H  L  S  F  F  S  S  R  F  I  C  C  C  L  H  S  R  L  Q  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91204" stop="91407"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKPCKTQPRISFCRERNIFISSSSSFIMQILLLTTCIYIYILYSSFDMHFFGVCVGNVLINHITFDS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91382" stop="91576"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTTSRLIHDPYMASTKNFHYLNGGDSLACGGNVRSLPAGYGGSDGVLHVVLSRCNQRTLVLLLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91075" e_stop="91460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="91075" e_stop="91460" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91075" stop="91460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282942" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTCAAAAATAATCTGGGTTCTTCAAAAAAAACCTGCAATTTCTTTTTGAGATTTTATACTAATAAAAACAATTGAATACATAGTACTAGTAGAAGTAATTAAAATGGCTGCATACAAATTATTAACTGAAACCTTGCAAAACTCAGCCCAGAATTTCTTTTTGTAGAGAGAGAAATATATTTATATCATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGCTTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATTTCCACTACCTAAACGGCGGCGACAGTC</gDNA_template>
            <first_frame> S  T  Q  K  *  S  G  F  F  K  K  N  L  Q  F  L  F  E  I  L  Y  *  *  K  Q  L  N  T  *  Y  *  *  K  *  L  K  W  L  H  T  N  Y  *  L  K  P  C  K  T  Q  P  R  I  S  F  C  R  E  R  N  I  F  I  S  S  S  S  S  F  I  M  Q  I  L  L  L  T  T  C  I  Y  I  Y  I  L  Y  S  S  F  D  M  H  F  F  G  V  C  V  G  N  V  L  I  N  H  I  T  F  D  S  *  S  I  H  G  V  Y  *  K  F  P  L  P  K  R  R  R  Q   </first_frame>
            <second_frame>  Q  L  K  N  N  L  G  S  S  K  K  T  C  N  F  F  L  R  F  Y  T  N  K  N  N  *  I  H  S  T  S  R  S  N  *  N  G  C  I  Q  I  I  N  *  N  L  A  K  L  S  P  E  F  L  F  V  E  R  E  I  Y  L  Y  H  H  H  H  H  S  S  C  R  S  Y  S  *  Q  H  V  Y  T  Y  T  Y  Y  I  A  A  L  I  C  I  F  L  V  C  V  W  V  T  Y  *  L  T  T  S  R  L  I  H  D  P  Y  M  A  S  T  K  N  F  H  Y  L  N  G  G  D  S  </second_frame>
            <third_frame>   N  S  K  I  I  W  V  L  Q  K  K  P  A  I  S  F  *  D  F  I  L  I  K  T  I  E  Y  I  V  L  V  E  V  I  K  M  A  A  Y  K  L  L  T  E  T  L  Q  N  S  A  Q  N  F  F  L  *  R  E  K  Y  I  Y  I  I  I  I  I  I  H  H  A  D  L  T  L  N  N  M  Y  I  H  I  H  I  I  *  Q  L  *  Y  A  F  F  W  C  V  C  G  *  R  T  D  *  P  H  H  V  *  F  M  I  H  T  W  R  L  L  K  I  S  T  T  *  T  A  A  T  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91204" stop="91407"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKPCKTQPRISFCRERNIFISSSSSFIMQILLLTTCIYIYILYSSFDMHFFGVCVGNVLINHITFDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="92149" PGL_stop="90982"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92149" e_stop="91714"/>
            <exon e_start="91625" e_stop="91052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.878" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92149" e_stop="91714" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.878">
            <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91625" e_stop="91052" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92149" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92141" stop="91714"/>
              <exon start="91625" stop="91397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92115" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92102" stop="91714"/>
              <exon start="91625" stop="91289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92092" stop="91714"/>
              <exon start="91625" stop="91102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="91714"/>
              <exon start="91625" stop="91457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92079" stop="91714"/>
              <exon start="91625" stop="91499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92070" stop="91774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92069" stop="91714"/>
              <exon start="91625" stop="91105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92065" stop="91714"/>
              <exon start="91625" stop="91201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92063" stop="91714"/>
              <exon start="91625" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92058" stop="91714"/>
              <exon start="91625" stop="91088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92055" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92053" stop="91714"/>
              <exon start="91625" stop="91215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92052" stop="91714"/>
              <exon start="91625" stop="91244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92051" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92048" stop="91714"/>
              <exon start="91625" stop="91317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92045" stop="91714"/>
              <exon start="91625" stop="91255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="91714"/>
              <exon start="91625" stop="91215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91946" stop="91714"/>
              <exon start="91625" stop="91225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91925" stop="91714"/>
              <exon start="91625" stop="91231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91859" stop="91714"/>
              <exon start="91625" stop="91131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91797" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91786" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292939" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91622" stop="91136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91621" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91608" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91531" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91482" stop="91131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91468" stop="91052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCCTTGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG : AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAACCCAGATTATTTTTGAGTTGAGTACCTTTTTTATTGAGTTGAAG</gDNA_template>
            <first_frame> S  L  L  A  L  *  L  S  S  L  S  S  Q  H  I  F  P  T  L  T  L  L  L  L  L  P  L  F  A  L  S  V  N  R  R  R  K  K  C  C  W  G  R  G  L  G  H  R  *  R  E  Q  Q  V  *  Q  N  S  L  *  I  S  I  S  I  I  L  T  L  I  L  L  L  V  I  T  I  I  H  S  I  L  T  I  L  F  H  L  Q  T  P  S  S  N  T  *  I  N  N  V  Y  *  Q  Q  R  K  P  F  P  S  E  T  A  V  N  L  L  I  F  *  K  L  L  I  F  *  K  L  A  S  S  V  N  A  G  *  S  L  A  G  I  S  T  C  T   : E  E  I  V  L  F  A  V  *  S  V  D  S  S  R  *  I  *  M  R  R  R  T  S  V  R  W  L  H  L  E  R  T  T  *  R  T  P  S  L  P  P  *  P  A  G  R  D  L  T  F  P  P  Q  A  R  L  S  P  P  F  R  *  W  K  F  L  V  D  A  M  Y  G  S  *  I  K  R  D  V  V  N  Q  Y  V  T  H  T  H  T  K  K  M  H  I  K  A  A  I  *  Y  V  Y  V  Y  T  C  C  *  E  *  D  L  H  D  E  *  *  *  *  *  Y  K  Y  I  S  L  S  T  K  R  N  S  G  L  S  F  A  R  F  Q  L  I  I  C  M  Q  P  F  *  L  L  L  L  V  L  C  I  Q  L  F  L  L  V  *  N  L  K  K  K  L  Q  V  F  F  E  E  P  R  L  F  L  S  *  V  P  F  L  L  S  *   </first_frame>
            <second_frame>  L  S  L  R  F  S  S  L  L  Y  L  P  N  T  S  S  P  L  S  L  F  F  F  F  F  L  C  S  L  S  L  *  I  E  E  E  K  N  V  A  G  E  E  D  S  A  T  D  E  E  N  N  K  Y  D  R  I  H  F  R  S  Q  S  Q  *  S  *  P  *  F  F  S  *  *  L  Q  *  S  I  R  S  S  Q  S  F  F  T  C  K  H  P  A  A  T  P  R  S  T  T  F  I  D  S  S  E  N  R  F  R  Q  K  P  P  *  I  C  *  F  S  R  N  C  *  F  F  E  S  L  L  P  L  *  T  P  V  N  P  W  P  G  Y  L  H  V  Q  :  R  R  *  C  F  L  Q  S  R  V  *  T  A  A  D  E  S  R  *  E  E  G  Q  V  F  V  G  C  I  *  K  G  L  H  E  E  L  R  R  C  R  R  S  R  R  E  G  I  *  R  F  R  H  K  R  D  C  R  R  R  L  G  S  G  N  F  *  *  T  P  C  M  D  H  E  S  N  V  M  W  L  I  S  T  L  P  T  H  T  P  K  K  C  I  S  K  L  L  Y  N  M  Y  M  Y  I  H  V  V  K  S  K  I  C  M  M  N  D  D  D  D  D  I  N  I  F  L  S  L  Q  K  E  I  L  G  *  V  L  Q  G  F  S  *  *  F  V  C  S  H  F  N  Y  F  Y  *  Y  Y  V  F  N  C  F  Y  *  Y  K  I  S  K  R  N  C  R  F  F  L  K  N  P  D  Y  F  *  V  E  Y  L  F  Y  *  V  E  </second_frame>
            <third_frame>   S  P  C  A  L  A  L  F  F  I  F  P  T  H  L  P  H  S  H  S  S  S  S  S  S  S  V  R  S  L  C  K  S  K  K  K  K  M  L  L  G  K  R  T  R  P  P  M  K  R  T  T  S  M  T  E  F  T  L  D  L  N  L  N  N  P  D  P  N  S  S  L  S  N  Y  N  N  P  F  D  P  H  N  P  F  S  P  A  N  T  Q  Q  Q  H  L  D  Q  Q  R  L  L  T  A  A  K  T  V  S  V  R  N  R  R  K  S  A  D  F  L  E  T  A  N  F  L  K  A  C  F  L  C  K  R  R  L  I  P  G  R  D  I  Y  M  Y  R :   G  D  S  A  F  C  S  L  E  C  R  Q  Q  Q  M  N  L  D  E  K  K  D  K  C  S  L  V  A  S  R  K  D  Y  M  K  N  S  V  A  A  A  V  A  G  G  K  G  S  D  V  S  A  T  S  E  T  V  A  A  V  *  V  V  E  I  F  S  R  R  H  V  W  I  M  N  Q  T  *  C  G  *  S  V  R  Y  P  H  T  H  Q  K  N  A  Y  Q  S  C  Y  I  I  C  I  C  I  Y  M  L  L  R  V  R  S  A  *  *  M  M  M  M  M  I  *  I  Y  F  S  L  Y  K  K  K  F  W  A  E  F  C  K  V  S  V  N  N  L  Y  A  A  I  L  I  T  S  T  S  T  M  Y  S  I  V  F  I  S  I  K  S  Q  K  E  I  A  G  F  F  *  R  T  Q  I  I  F  E  L  S  T  F  F  I  E  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92147" stop="91714"/>
                    <exon start="91625" stop="91442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPCALALFFIFPTHLPHSHSSSSSSSVRSLCKSKKKKMLLGKRTRPPMKRTTSMTEFTLDLNLNNPDPNSSLSNYNNPFDPHNPFSPANTQQQHLDQQRLLTAAKTVSVRNRRKSADFLETANFLKACFLCKRRLIPGRDIYMYRGDSAFCSLECRQQQMNLDEKKDKCSLVASRKDYMKNSVAAAVAGGKGSDVSATSETVAAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91421" stop="91221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPCMDHESNVMWLISTLPTHTPKKCISKLLYNMYMYIHVVKSKICMMNDDDDDINIFLSLQKEILG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92149" e_stop="91714"/>
            <exon e_start="91625" e_stop="91096"/>
            <exon e_start="91000" e_stop="90987"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.857"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92149" e_stop="91714" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.878">
            <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91625" e_stop="91096" e_length="530"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91095" i_stop="91001" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="91000" e_stop="90987" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92149" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92141" stop="91714"/>
              <exon start="91625" stop="91397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92115" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92102" stop="91714"/>
              <exon start="91625" stop="91289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92092" stop="91714"/>
              <exon start="91625" stop="91102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="91714"/>
              <exon start="91625" stop="91457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92079" stop="91714"/>
              <exon start="91625" stop="91499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92070" stop="91714"/>
              <exon start="91625" stop="91096"/>
              <exon start="91000" stop="90987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92070" stop="91774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92069" stop="91714"/>
              <exon start="91625" stop="91105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92065" stop="91714"/>
              <exon start="91625" stop="91201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92063" stop="91714"/>
              <exon start="91625" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92055" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92053" stop="91714"/>
              <exon start="91625" stop="91215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92052" stop="91714"/>
              <exon start="91625" stop="91244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92051" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92048" stop="91714"/>
              <exon start="91625" stop="91317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92045" stop="91714"/>
              <exon start="91625" stop="91255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="91714"/>
              <exon start="91625" stop="91215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91946" stop="91714"/>
              <exon start="91625" stop="91225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91925" stop="91714"/>
              <exon start="91625" stop="91231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91859" stop="91714"/>
              <exon start="91625" stop="91131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91797" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91786" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292939" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91622" stop="91136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91621" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91608" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91531" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91482" stop="91131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCCTTGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG : AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCAATTGTTTTTATTAGTATAAAATCTCAAAAAGAAATTGCAGGTTTTTTTTGAAGAA : AAAAAAATAAGAAA</gDNA_template>
            <first_frame> S  L  L  A  L  *  L  S  S  L  S  S  Q  H  I  F  P  T  L  T  L  L  L  L  L  P  L  F  A  L  S  V  N  R  R  R  K  K  C  C  W  G  R  G  L  G  H  R  *  R  E  Q  Q  V  *  Q  N  S  L  *  I  S  I  S  I  I  L  T  L  I  L  L  L  V  I  T  I  I  H  S  I  L  T  I  L  F  H  L  Q  T  P  S  S  N  T  *  I  N  N  V  Y  *  Q  Q  R  K  P  F  P  S  E  T  A  V  N  L  L  I  F  *  K  L  L  I  F  *  K  L  A  S  S  V  N  A  G  *  S  L  A  G  I  S  T  C  T   : E  E  I  V  L  F  A  V  *  S  V  D  S  S  R  *  I  *  M  R  R  R  T  S  V  R  W  L  H  L  E  R  T  T  *  R  T  P  S  L  P  P  *  P  A  G  R  D  L  T  F  P  P  Q  A  R  L  S  P  P  F  R  *  W  K  F  L  V  D  A  M  Y  G  S  *  I  K  R  D  V  V  N  Q  Y  V  T  H  T  H  T  K  K  M  H  I  K  A  A  I  *  Y  V  Y  V  Y  T  C  C  *  E  *  D  L  H  D  E  *  *  *  *  *  Y  K  Y  I  S  L  S  T  K  R  N  S  G  L  S  F  A  R  F  Q  L  I  I  C  M  Q  P  F  *  L  L  L  L  V  L  C  I  Q  L  F  L  L  V  *  N  L  K  K  K  L  Q  V  F  F  E  E  :  K  K  I  R   </first_frame>
            <second_frame>  L  S  L  R  F  S  S  L  L  Y  L  P  N  T  S  S  P  L  S  L  F  F  F  F  F  L  C  S  L  S  L  *  I  E  E  E  K  N  V  A  G  E  E  D  S  A  T  D  E  E  N  N  K  Y  D  R  I  H  F  R  S  Q  S  Q  *  S  *  P  *  F  F  S  *  *  L  Q  *  S  I  R  S  S  Q  S  F  F  T  C  K  H  P  A  A  T  P  R  S  T  T  F  I  D  S  S  E  N  R  F  R  Q  K  P  P  *  I  C  *  F  S  R  N  C  *  F  F  E  S  L  L  P  L  *  T  P  V  N  P  W  P  G  Y  L  H  V  Q  :  R  R  *  C  F  L  Q  S  R  V  *  T  A  A  D  E  S  R  *  E  E  G  Q  V  F  V  G  C  I  *  K  G  L  H  E  E  L  R  R  C  R  R  S  R  R  E  G  I  *  R  F  R  H  K  R  D  C  R  R  R  L  G  S  G  N  F  *  *  T  P  C  M  D  H  E  S  N  V  M  W  L  I  S  T  L  P  T  H  T  P  K  K  C  I  S  K  L  L  Y  N  M  Y  M  Y  I  H  V  V  K  S  K  I  C  M  M  N  D  D  D  D  D  I  N  I  F  L  S  L  Q  K  E  I  L  G  *  V  L  Q  G  F  S  *  *  F  V  C  S  H  F  N  Y  F  Y  *  Y  Y  V  F  N  C  F  Y  *  Y  K  I  S  K  R  N  C  R  F  F  L  K  K :   K  K  *  E  </second_frame>
            <third_frame>   S  P  C  A  L  A  L  F  F  I  F  P  T  H  L  P  H  S  H  S  S  S  S  S  S  S  V  R  S  L  C  K  S  K  K  K  K  M  L  L  G  K  R  T  R  P  P  M  K  R  T  T  S  M  T  E  F  T  L  D  L  N  L  N  N  P  D  P  N  S  S  L  S  N  Y  N  N  P  F  D  P  H  N  P  F  S  P  A  N  T  Q  Q  Q  H  L  D  Q  Q  R  L  L  T  A  A  K  T  V  S  V  R  N  R  R  K  S  A  D  F  L  E  T  A  N  F  L  K  A  C  F  L  C  K  R  R  L  I  P  G  R  D  I  Y  M  Y  R :   G  D  S  A  F  C  S  L  E  C  R  Q  Q  Q  M  N  L  D  E  K  K  D  K  C  S  L  V  A  S  R  K  D  Y  M  K  N  S  V  A  A  A  V  A  G  G  K  G  S  D  V  S  A  T  S  E  T  V  A  A  V  *  V  V  E  I  F  S  R  R  H  V  W  I  M  N  Q  T  *  C  G  *  S  V  R  Y  P  H  T  H  Q  K  N  A  Y  Q  S  C  Y  I  I  C  I  C  I  Y  M  L  L  R  V  R  S  A  *  *  M  M  M  M  M  I  *  I  Y  F  S  L  Y  K  K  K  F  W  A  E  F  C  K  V  S  V  N  N  L  Y  A  A  I  L  I  T  S  T  S  T  M  Y  S  I  V  F  I  S  I  K  S  Q  K  E  I  A  G  F  F  *  R   : K  K  N  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92147" stop="91714"/>
                    <exon start="91625" stop="91442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPCALALFFIFPTHLPHSHSSSSSSSVRSLCKSKKKKMLLGKRTRPPMKRTTSMTEFTLDLNLNNPDPNSSLSNYNNPFDPHNPFSPANTQQQHLDQQRLLTAAKTVSVRNRRKSADFLETANFLKACFLCKRRLIPGRDIYMYRGDSAFCSLECRQQQMNLDEKKDKCSLVASRKDYMKNSVAAAVAGGKGSDVSATSETVAAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91421" stop="91221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPCMDHESNVMWLISTLPTHTPKKCISKLLYNMYMYIHVVKSKICMMNDDDDDINIFLSLQKEILG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="92149" e_stop="91714"/>
            <exon e_start="91625" e_stop="91151"/>
            <exon e_start="91000" e_stop="90991"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92149" e_stop="91714" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.878">
            <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91625" e_stop="91151" e_length="475"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91150" i_stop="91001" i_length="150"/>
          </intron>
          <exon e_serial="3" e_score="0.900">
            <gDNA_exon_boundary e_start="91000" e_stop="90991" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92149" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92141" stop="91714"/>
              <exon start="91625" stop="91397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92115" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92102" stop="91714"/>
              <exon start="91625" stop="91289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="91714"/>
              <exon start="91625" stop="91457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92079" stop="91714"/>
              <exon start="91625" stop="91499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92070" stop="91774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92065" stop="91714"/>
              <exon start="91625" stop="91201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92063" stop="91714"/>
              <exon start="91625" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92055" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92053" stop="91714"/>
              <exon start="91625" stop="91215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92052" stop="91714"/>
              <exon start="91625" stop="91244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92051" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92048" stop="91714"/>
              <exon start="91625" stop="91317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92045" stop="91714"/>
              <exon start="91625" stop="91255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="91714"/>
              <exon start="91625" stop="91215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91946" stop="91714"/>
              <exon start="91625" stop="91225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91925" stop="91714"/>
              <exon start="91625" stop="91231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91797" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91786" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292939" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91623" stop="91151"/>
              <exon start="91000" stop="90991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91621" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91608" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91531" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCCTTGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG : AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAAATTCTGGGCTGAGTTTTGCAAGGTTTCAGTTAATAATTTGTATGCAGCCATTTTAATTACTTCTACTAGTACTATGTATTCA : AAAAAAATAA</gDNA_template>
            <first_frame> S  L  L  A  L  *  L  S  S  L  S  S  Q  H  I  F  P  T  L  T  L  L  L  L  L  P  L  F  A  L  S  V  N  R  R  R  K  K  C  C  W  G  R  G  L  G  H  R  *  R  E  Q  Q  V  *  Q  N  S  L  *  I  S  I  S  I  I  L  T  L  I  L  L  L  V  I  T  I  I  H  S  I  L  T  I  L  F  H  L  Q  T  P  S  S  N  T  *  I  N  N  V  Y  *  Q  Q  R  K  P  F  P  S  E  T  A  V  N  L  L  I  F  *  K  L  L  I  F  *  K  L  A  S  S  V  N  A  G  *  S  L  A  G  I  S  T  C  T   : E  E  I  V  L  F  A  V  *  S  V  D  S  S  R  *  I  *  M  R  R  R  T  S  V  R  W  L  H  L  E  R  T  T  *  R  T  P  S  L  P  P  *  P  A  G  R  D  L  T  F  P  P  Q  A  R  L  S  P  P  F  R  *  W  K  F  L  V  D  A  M  Y  G  S  *  I  K  R  D  V  V  N  Q  Y  V  T  H  T  H  T  K  K  M  H  I  K  A  A  I  *  Y  V  Y  V  Y  T  C  C  *  E  *  D  L  H  D  E  *  *  *  *  *  Y  K  Y  I  S  L  S  T  K  R  N  S  G  L  S  F  A  R  F  Q  L  I  I  C  M  Q  P  F  *  L  L  L  L  V  L  C  I  Q :   K  K  * </first_frame>
            <second_frame>  L  S  L  R  F  S  S  L  L  Y  L  P  N  T  S  S  P  L  S  L  F  F  F  F  F  L  C  S  L  S  L  *  I  E  E  E  K  N  V  A  G  E  E  D  S  A  T  D  E  E  N  N  K  Y  D  R  I  H  F  R  S  Q  S  Q  *  S  *  P  *  F  F  S  *  *  L  Q  *  S  I  R  S  S  Q  S  F  F  T  C  K  H  P  A  A  T  P  R  S  T  T  F  I  D  S  S  E  N  R  F  R  Q  K  P  P  *  I  C  *  F  S  R  N  C  *  F  F  E  S  L  L  P  L  *  T  P  V  N  P  W  P  G  Y  L  H  V  Q  :  R  R  *  C  F  L  Q  S  R  V  *  T  A  A  D  E  S  R  *  E  E  G  Q  V  F  V  G  C  I  *  K  G  L  H  E  E  L  R  R  C  R  R  S  R  R  E  G  I  *  R  F  R  H  K  R  D  C  R  R  R  L  G  S  G  N  F  *  *  T  P  C  M  D  H  E  S  N  V  M  W  L  I  S  T  L  P  T  H  T  P  K  K  C  I  S  K  L  L  Y  N  M  Y  M  Y  I  H  V  V  K  S  K  I  C  M  M  N  D  D  D  D  D  I  N  I  F  L  S  L  Q  K  E  I  L  G  *  V  L  Q  G  F  S  *  *  F  V  C  S  H  F  N  Y  F  Y  *  Y  Y  V  F   : K  K  N   </second_frame>
            <third_frame>   S  P  C  A  L  A  L  F  F  I  F  P  T  H  L  P  H  S  H  S  S  S  S  S  S  S  V  R  S  L  C  K  S  K  K  K  K  M  L  L  G  K  R  T  R  P  P  M  K  R  T  T  S  M  T  E  F  T  L  D  L  N  L  N  N  P  D  P  N  S  S  L  S  N  Y  N  N  P  F  D  P  H  N  P  F  S  P  A  N  T  Q  Q  Q  H  L  D  Q  Q  R  L  L  T  A  A  K  T  V  S  V  R  N  R  R  K  S  A  D  F  L  E  T  A  N  F  L  K  A  C  F  L  C  K  R  R  L  I  P  G  R  D  I  Y  M  Y  R :   G  D  S  A  F  C  S  L  E  C  R  Q  Q  Q  M  N  L  D  E  K  K  D  K  C  S  L  V  A  S  R  K  D  Y  M  K  N  S  V  A  A  A  V  A  G  G  K  G  S  D  V  S  A  T  S  E  T  V  A  A  V  *  V  V  E  I  F  S  R  R  H  V  W  I  M  N  Q  T  *  C  G  *  S  V  R  Y  P  H  T  H  Q  K  N  A  Y  Q  S  C  Y  I  I  C  I  C  I  Y  M  L  L  R  V  R  S  A  *  *  M  M  M  M  M  I  *  I  Y  F  S  L  Y  K  K  K  F  W  A  E  F  C  K  V  S  V  N  N  L  Y  A  A  I  L  I  T  S  T  S  T  M  Y  S  :  K  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92147" stop="91714"/>
                    <exon start="91625" stop="91442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPCALALFFIFPTHLPHSHSSSSSSSVRSLCKSKKKKMLLGKRTRPPMKRTTSMTEFTLDLNLNNPDPNSSLSNYNNPFDPHNPFSPANTQQQHLDQQRLLTAAKTVSVRNRRKSADFLETANFLKACFLCKRRLIPGRDIYMYRGDSAFCSLECRQQQMNLDEKKDKCSLVASRKDYMKNSVAAAVAGGKGSDVSATSETVAAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91421" stop="91221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPCMDHESNVMWLISTLPTHTPKKCISKLLYNMYMYIHVVKSKICMMNDDDDDINIFLSLQKEILG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="92149" e_stop="91714"/>
            <exon e_start="91625" e_stop="91233"/>
            <exon e_start="91000" e_stop="90982"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.878" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92149" e_stop="91714" e_length="436"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.878">
            <gDNA_intron_boundary i_start="91713" i_stop="91626" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91625" e_stop="91233" e_length="393"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91232" i_stop="91001" i_length="232"/>
          </intron>
          <exon e_serial="3" e_score="0.900">
            <gDNA_exon_boundary e_start="91000" e_stop="90982" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92149" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92141" stop="91714"/>
              <exon start="91625" stop="91397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92115" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92102" stop="91714"/>
              <exon start="91625" stop="91289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="91714"/>
              <exon start="91625" stop="91457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92079" stop="91714"/>
              <exon start="91625" stop="91499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92070" stop="91774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92067" stop="91714"/>
              <exon start="91625" stop="91431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92066" stop="91714"/>
              <exon start="91625" stop="91510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92063" stop="91714"/>
              <exon start="91625" stop="91456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91233"/>
              <exon start="91000" stop="90991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92057" stop="91714"/>
              <exon start="91625" stop="91602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92056" stop="91714"/>
              <exon start="91625" stop="91565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92055" stop="91714"/>
              <exon start="91625" stop="91389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92052" stop="91714"/>
              <exon start="91625" stop="91244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92051" stop="91714"/>
              <exon start="91625" stop="91242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92048" stop="91714"/>
              <exon start="91625" stop="91317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92045" stop="91714"/>
              <exon start="91625" stop="91255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92041" stop="91714"/>
              <exon start="91625" stop="91243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91997" stop="91714"/>
              <exon start="91625" stop="91462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91974" stop="91714"/>
              <exon start="91625" stop="91233"/>
              <exon start="91000" stop="90982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372748" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91877" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91821" stop="91714"/>
              <exon start="91625" stop="91233"/>
              <exon start="91000" stop="90987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91797" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91786" stop="91714"/>
              <exon start="91625" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292939" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91743" stop="91714"/>
              <exon start="91625" stop="91233"/>
              <exon start="91000" stop="90991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91621" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91619" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91608" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91531" stop="91233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308374" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCCTTGCGCTTTAGCTCTCTTCTTTATCTTCCCAACACATCTTCCCCACTCTCACTCTTCTTCTTCTTCTTCCTCTGTTCGCTCTCTCTGTAAATCGAAGAAGAAAAAAATGTTGCTGGGGAAGAGGACTCGGCCACCGATGAAGAGAACAACAAGTATGACAGAATTCACTTTAGATCTCAATCTCAATAATCCTGACCCTAATTCTTCTCTTAGTAATTACAATAATCCATTCGATCCTCACAATCCTTTTTCACCTGCAAACACCCAGCAGCAACACCTAGATCAACAACGTTTATTGACAGCAGCGAAAACCGTTTCCGTCAGAAACCGCCGTAAATCTGCTGATTTTCTAGAAACTGCTAATTTTTTGAAAGCTTGCTTCCTCTGTAAACGCCGGTTAATCCCTGGCCGGGATATCTACATGTACAG : AGGAGATAGTGCTTTTTGCAGTCTAGAGTGTAGACAGCAGCAGATGAATCTAGATGAGAAGAAGGACAAGTGTTCGTTGGTTGCATCTAGAAAGGACTACATGAAGAACTCCGTCGCTGCCGCCGTAGCCGGCGGGAAGGGATCTGACGTTTCCGCCACAAGCGAGACTGTCGCCGCCGTTTAGGTAGTGGAAATTTTTAGTAGACGCCATGTATGGATCATGAATCAAACGTGATGTGGTTAATCAGTACGTTACCCACACACACACCAAAAAAATGCATATCAAAGCTGCTATATAATATGTATATGTATATACATGTTGTTAAGAGTAAGATCTGCATGATGAATGATGATGATGATGATATAAATATATTTCTCTCTCTACAAAAAGAA : AAAAAAATAAGAAATAATT</gDNA_template>
            <first_frame> S  L  L  A  L  *  L  S  S  L  S  S  Q  H  I  F  P  T  L  T  L  L  L  L  L  P  L  F  A  L  S  V  N  R  R  R  K  K  C  C  W  G  R  G  L  G  H  R  *  R  E  Q  Q  V  *  Q  N  S  L  *  I  S  I  S  I  I  L  T  L  I  L  L  L  V  I  T  I  I  H  S  I  L  T  I  L  F  H  L  Q  T  P  S  S  N  T  *  I  N  N  V  Y  *  Q  Q  R  K  P  F  P  S  E  T  A  V  N  L  L  I  F  *  K  L  L  I  F  *  K  L  A  S  S  V  N  A  G  *  S  L  A  G  I  S  T  C  T   : E  E  I  V  L  F  A  V  *  S  V  D  S  S  R  *  I  *  M  R  R  R  T  S  V  R  W  L  H  L  E  R  T  T  *  R  T  P  S  L  P  P  *  P  A  G  R  D  L  T  F  P  P  Q  A  R  L  S  P  P  F  R  *  W  K  F  L  V  D  A  M  Y  G  S  *  I  K  R  D  V  V  N  Q  Y  V  T  H  T  H  T  K  K  M  H  I  K  A  A  I  *  Y  V  Y  V  Y  T  C  C  *  E  *  D  L  H  D  E  *  *  *  *  *  Y  K  Y  I  S  L  S  T  K  R   : K  K  N  K  K  *   </first_frame>
            <second_frame>  L  S  L  R  F  S  S  L  L  Y  L  P  N  T  S  S  P  L  S  L  F  F  F  F  F  L  C  S  L  S  L  *  I  E  E  E  K  N  V  A  G  E  E  D  S  A  T  D  E  E  N  N  K  Y  D  R  I  H  F  R  S  Q  S  Q  *  S  *  P  *  F  F  S  *  *  L  Q  *  S  I  R  S  S  Q  S  F  F  T  C  K  H  P  A  A  T  P  R  S  T  T  F  I  D  S  S  E  N  R  F  R  Q  K  P  P  *  I  C  *  F  S  R  N  C  *  F  F  E  S  L  L  P  L  *  T  P  V  N  P  W  P  G  Y  L  H  V  Q  :  R  R  *  C  F  L  Q  S  R  V  *  T  A  A  D  E  S  R  *  E  E  G  Q  V  F  V  G  C  I  *  K  G  L  H  E  E  L  R  R  C  R  R  S  R  R  E  G  I  *  R  F  R  H  K  R  D  C  R  R  R  L  G  S  G  N  F  *  *  T  P  C  M  D  H  E  S  N  V  M  W  L  I  S  T  L  P  T  H  T  P  K  K  C  I  S  K  L  L  Y  N  M  Y  M  Y  I  H  V  V  K  S  K  I  C  M  M  N  D  D  D  D  D  I  N  I  F  L  S  L  Q  K  E  :  K  K  I  R  N  N  </second_frame>
            <third_frame>   S  P  C  A  L  A  L  F  F  I  F  P  T  H  L  P  H  S  H  S  S  S  S  S  S  S  V  R  S  L  C  K  S  K  K  K  K  M  L  L  G  K  R  T  R  P  P  M  K  R  T  T  S  M  T  E  F  T  L  D  L  N  L  N  N  P  D  P  N  S  S  L  S  N  Y  N  N  P  F  D  P  H  N  P  F  S  P  A  N  T  Q  Q  Q  H  L  D  Q  Q  R  L  L  T  A  A  K  T  V  S  V  R  N  R  R  K  S  A  D  F  L  E  T  A  N  F  L  K  A  C  F  L  C  K  R  R  L  I  P  G  R  D  I  Y  M  Y  R :   G  D  S  A  F  C  S  L  E  C  R  Q  Q  Q  M  N  L  D  E  K  K  D  K  C  S  L  V  A  S  R  K  D  Y  M  K  N  S  V  A  A  A  V  A  G  G  K  G  S  D  V  S  A  T  S  E  T  V  A  A  V  *  V  V  E  I  F  S  R  R  H  V  W  I  M  N  Q  T  *  C  G  *  S  V  R  Y  P  H  T  H  Q  K  N  A  Y  Q  S  C  Y  I  I  C  I  C  I  Y  M  L  L  R  V  R  S  A  *  *  M  M  M  M  M  I  *  I  Y  F  S  L  Y  K  K  K :   K  K  *  E  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92147" stop="91714"/>
                    <exon start="91625" stop="91442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPCALALFFIFPTHLPHSHSSSSSSSVRSLCKSKKKKMLLGKRTRPPMKRTTSMTEFTLDLNLNNPDPNSSLSNYNNPFDPHNPFSPANTQQQHLDQQRLLTAAKTVSVRNRRKSADFLETANFLKACFLCKRRLIPGRDIYMYRGDSAFCSLECRQQQMNLDEKKDKCSLVASRKDYMKNSVAAAVAGGKGSDVSATSETVAAV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91421" stop="91233"/>
                    <exon start="91000" stop="90983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPCMDHESNVMWLISTLPTHTPKKCISKLLYNMYMYIHVVKSKICMMNDDDDDINIFLSLQKEKKIRNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="98180" PGL_stop="97719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98180" e_stop="97719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="98180" e_stop="97719" e_length="462"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98180" stop="97719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGAGTAAATTTTTTCTTCGAATATGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAATAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAATTATACCTTGAATTTTGATAGAAGAATCATATATATCCCTAAATAATTTTTAAAAAAAATTTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCATGGGTATATGTGAGCCGTTTGTATAACGATAACGGCATATATGAGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTTTATTTTTATGTTATTGATTA</gDNA_template>
            <first_frame> L  L  *  M  S  K  F  F  L  R  I  *  N  *  I  T  I  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  *  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  L  Y  L  E  F  *  *  K  N  H  I  Y  P  *  I  I  F  K  K  N  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  V  I  L  *  R  H  G  Y  M  *  A  V  C  I  T  I  T  A  Y  M  S  H  F  Y  N  E  G  Y  I  S  S  K  *  Q  S  *  E  V  Y  Q  T  L  F  P  L  F  L  C  Y  *  L </first_frame>
            <second_frame>  Y  C  R  *  V  N  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  N  Y  T  L  N  F  D  R  R  I  I  Y  I  P  K  *  F  L  K  K  I  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  S  F  C  N  G  M  G  I  C  E  P  F  V  *  R  *  R  H  I  *  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E  R  Y  I  R  P  F  S  L  Y  F  Y  V  I  D   </second_frame>
            <third_frame>   I  V  D  E  *  I  F  S  S  N  M  K  L  N  Y  N  T  H  K  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  I  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  I  I  P  *  I  L  I  E  E  S  Y  I  S  L  N  N  F  *  K  K  F  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  W  V  Y  V  S  R  L  Y  N  D  N  G  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  G  I  S  D  P  F  P  F  I  F  M  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="112208" PGL_stop="107643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109861" e_stop="108978"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="109861" e_stop="108978" e_length="884"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109861" stop="108978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109861" stop="108995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCTATATTATGCAACCAATGAAGAGCCAAAGTTATCATCAGTAAGCTGGAGACTACTAGTGCCTTCTTAAACTTAAGAGTCACCTAAAGAGGGCCCATGGAGAATGGGAGTAGGTACAGTTAAAGATAGTTCCCCAGTTCAGTGTTTGAGTCGCTGCAAGTGGATATTGCATTTTGAAGTTTCAATCTATTATAAGAAATACTGAAACTTGATGATCTGGAGGTATTCTGTTATGTTCAAATTTAAGCAAGAAGTGTGTACTATAATGCGATGTCTTCAAGGAATAAGAAAGATGCAAGGTGTCTTATTCTGAACTTAATAAAAAAGTATCTTACATTGTTGAATAACAAATTAAAAAAGAAATGGAATTGAGAGGAGGAGACTAAGGAAGATTTCACTATCTTTTTAAATTATTAGGGAGCTTTGCCAAAGATGAAGGGAGATAGAAGAGCTGAATAAAATTAGGGTTTCTAGCTTCATCTGAAGCTGATATCTAAAGAAAAGACCGAAAGAACAGTTAAGTGCTCATATTGAATGGCCTTTGTACTTTATATGCTAGTTCTTAATAACATACAAGTTTCCGCTCTGTCCCCACACCTGAAATAAGGGCCTAGGAAAATGAGACACCTTTCCACGTATTTGTATTCAACTTGGACCCATGTATGTAAGAAAGACCAAGGCTATTGACGGAATCTATGTTGCAAAACTTGTTCTGATTGATTTAAGATTTGCTTTTTTGAAGTAAGAAGTTTGTGATTTGTGTCTAGAGAATTCCATCTTTCTTCATGAAAAAATTTATATATTCTCCTTTATCATTGAACTTGTAGAAGAAAGTCACCATAATTACTTAGCTTTTGTTTTCAATTATTGTTAGACAGCTG</gDNA_template>
            <first_frame> C  S  I  L  C  N  Q  *  R  A  K  V  I  I  S  K  L  E  T  T  S  A  F  L  N  L  R  V  T  *  R  G  P  M  E  N  G  S  R  Y  S  *  R  *  F  P  S  S  V  F  E  S  L  Q  V  D  I  A  F  *  S  F  N  L  L  *  E  I  L  K  L  D  D  L  E  V  F  C  Y  V  Q  I  *  A  R  S  V  Y  Y  N  A  M  S  S  R  N  K  K  D  A  R  C  L  I  L  N  L  I  K  K  Y  L  T  L  L  N  N  K  L  K  K  K  W  N  *  E  E  E  T  K  E  D  F  T  I  F  L  N  Y  *  G  A  L  P  K  M  K  G  D  R  R  A  E  *  N  *  G  F  *  L  H  L  K  L  I  S  K  E  K  T  E  R  T  V  K  C  S  Y  *  M  A  F  V  L  Y  M  L  V  L  N  N  I  Q  V  S  A  L  S  P  H  L  K  *  G  P  R  K  M  R  H  L  S  T  Y  L  Y  S  T  W  T  H  V  C  K  K  D  Q  G  Y  *  R  N  L  C  C  K  T  C  S  D  *  F  K  I  C  F  F  E  V  R  S  L  *  F  V  S  R  E  F  H  L  S  S  *  K  N  L  Y  I  L  L  Y  H  *  T  C  R  R  K  S  P  *  L  L  S  F  C  F  Q  L  L  L  D  S   </first_frame>
            <second_frame>  A  L  Y  Y  A  T  N  E  E  P  K  L  S  S  V  S  W  R  L  L  V  P  S  *  T  *  E  S  P  K  E  G  P  W  R  M  G  V  G  T  V  K  D  S  S  P  V  Q  C  L  S  R  C  K  W  I  L  H  F  E  V  S  I  Y  Y  K  K  Y  *  N  L  M  I  W  R  Y  S  V  M  F  K  F  K  Q  E  V  C  T  I  M  R  C  L  Q  G  I  R  K  M  Q  G  V  L  F  *  T  *  *  K  S  I  L  H  C  *  I  T  N  *  K  R  N  G  I  E  R  R  R  L  R  K  I  S  L  S  F  *  I  I  R  E  L  C  Q  R  *  R  E  I  E  E  L  N  K  I  R  V  S  S  F  I  *  S  *  Y  L  K  K  R  P  K  E  Q  L  S  A  H  I  E  W  P  L  Y  F  I  C  *  F  L  I  T  Y  K  F  P  L  C  P  H  T  *  N  K  G  L  G  K  *  D  T  F  P  R  I  C  I  Q  L  G  P  M  Y  V  R  K  T  K  A  I  D  G  I  Y  V  A  K  L  V  L  I  D  L  R  F  A  F  L  K  *  E  V  C  D  L  C  L  E  N  S  I  F  L  H  E  K  I  Y  I  F  S  F  I  I  E  L  V  E  E  S  H  H  N  Y  L  A  F  V  F  N  Y  C  *  T  A  </second_frame>
            <third_frame>   L  Y  I  M  Q  P  M  K  S  Q  S  Y  H  Q  *  A  G  D  Y  *  C  L  L  K  L  K  S  H  L  K  R  A  H  G  E  W  E  *  V  Q  L  K  I  V  P  Q  F  S  V  *  V  A  A  S  G  Y  C  I  L  K  F  Q  S  I  I  R  N  T  E  T  *  *  S  G  G  I  L  L  C  S  N  L  S  K  K  C  V  L  *  C  D  V  F  K  E  *  E  R  C  K  V  S  Y  S  E  L  N  K  K  V  S  Y  I  V  E  *  Q  I  K  K  E  M  E  L  R  G  G  D  *  G  R  F  H  Y  L  F  K  L  L  G  S  F  A  K  D  E  G  R  *  K  S  *  I  K  L  G  F  L  A  S  S  E  A  D  I  *  R  K  D  R  K  N  S  *  V  L  I  L  N  G  L  C  T  L  Y  A  S  S  *  *  H  T  S  F  R  S  V  P  T  P  E  I  R  A  *  E  N  E  T  P  F  H  V  F  V  F  N  L  D  P  C  M  *  E  R  P  R  L  L  T  E  S  M  L  Q  N  L  F  *  L  I  *  D  L  L  F  *  S  K  K  F  V  I  C  V  *  R  I  P  S  F  F  M  K  K  F  I  Y  S  P  L  S  L  N  L  *  K  K  V  T  I  I  T  *  L  L  F  S  I  I  V  R  Q  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112208" e_stop="112087"/>
            <exon e_start="111838" e_stop="111779"/>
            <exon e_start="110927" e_stop="110789"/>
            <exon e_start="110188" e_stop="110070"/>
            <exon e_start="108896" e_stop="108666"/>
            <exon e_start="107723" e_stop="107643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="0.975"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.562" e_score="0.996"/>
          <exon-only e_score="0.914"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="112208" e_stop="112087" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="112086" i_stop="111839" i_length="248"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111838" e_stop="111779" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111778" i_stop="110928" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="110927" e_stop="110789" e_length="139"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.990">
            <gDNA_intron_boundary i_start="110788" i_stop="110189" i_length="600"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="110188" e_stop="110070" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.756">
            <gDNA_intron_boundary i_start="110069" i_stop="108897" i_length="1173"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="108896" e_stop="108666" e_length="231"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.562">
            <gDNA_intron_boundary i_start="108665" i_stop="107724" i_length="942"/>
          </intron>
          <exon e_serial="6" e_score="0.914">
            <gDNA_exon_boundary e_start="107723" e_stop="107643" e_length="81"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112208" stop="112087"/>
              <exon start="111838" stop="111779"/>
              <exon start="110927" stop="110789"/>
              <exon start="110188" stop="110070"/>
              <exon start="108896" stop="108666"/>
              <exon start="107723" stop="107643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGACGAGATGCCACCCCTTGATCTGAATCTTATTATGGACAAAATATATGGGATGCTGCATGATCTGGATAATGCGCTGGAAACTGCCAACTATGACAAGCTTCTGCAGTCAGGACTACAG : ATTGCAATTATTGGTCGACCTAATGTTGGGAAATCAAGCCTTCTTAATGCATGGAGCAAA : ACTGATAGAGCAATAGTTACAAATATTGCTGGTACGACACGGGATGTTGTGGAAGCCAGTGTTTCTGTTCGTGGTGTTCCTGTTACACTTCTTGATACTGCAGGAATCAGGGAGACTGATGATATTGTGGAAAAAATTG : GTGTGGAAAGATCTGAAGCTGTTGCCAGAAATGCTGATGTCGTAATAATGACCATAAGTGCAGCAGAGGGGTGGACTCCGGAGGATACAAAGCTCCTTGAGAGAATCCAAAGGAGTCAG : TTTCAGACTGCGTCAGGATGTAGCTCTCCATTGATTCTGGTAATCAACAAAATAGACTGTGCTCCATCCGACTCTTATGAATGGGTTAATACATGTGGCTTCTCCTTCAACAAGCACATTCCAACATGTGCTGTCAACGGTCAAGGGATTCAAGATCTTGAGGCAGCAATAATAGAAATTATGGGTCTCAATAAGATCCCTGTCGGTGGTCGCAGATGGACAGTCAACCAG : AGACAATGTGAGCAGCTTATTCGAACAAAGGAGGCTTTCATGAGGTTGAAATCGTCAATTGAGGAAGATATGCCCTTTGAT</gDNA_template>
            <first_frame> M  T  R  C  H  P  L  I  *  I  L  L  W  T  K  Y  M  G  C  C  M  I  W  I  M  R  W  K  L  P  T  M  T  S  F  C  S  Q  D  Y  R :   L  Q  L  L  V  D  L  M  L  G  N  Q  A  F  L  M  H  G  A  K :   L  I  E  Q  *  L  Q  I  L  L  V  R  H  G  M  L  W  K  P  V  F  L  F  V  V  F  L  L  H  F  L  I  L  Q  E  S  G  R  L  M  I  L  W  K  K  L  :  V  W  K  D  L  K  L  L  P  E  M  L  M  S  *  *  *  P  *  V  Q  Q  R  G  G  L  R  R  I  Q  S  S  L  R  E  S  K  G  V  S :   F  R  L  R  Q  D  V  A  L  H  *  F  W  *  S  T  K  *  T  V  L  H  P  T  L  M  N  G  L  I  H  V  A  S  P  S  T  S  T  F  Q  H  V  L  S  T  V  K  G  F  K  I  L  R  Q  Q  *  *  K  L  W  V  S  I  R  S  L  S  V  V  A  D  G  Q  S  T  R :   D  N  V  S  S  L  F  E  Q  R  R  L  S  *  G  *  N  R  Q  L  R  K  I  C  P  L   </first_frame>
            <second_frame>  *  R  D  A  T  P  *  S  E  S  Y  Y  G  Q  N  I  W  D  A  A  *  S  G  *  C  A  G  N  C  Q  L  *  Q  A  S  A  V  R  T  T   : D  C  N  Y  W  S  T  *  C  W  E  I  K  P  S  *  C  M  E  Q   : N  *  *  S  N  S  Y  K  Y  C  W  Y  D  T  G  C  C  G  S  Q  C  F  C  S  W  C  S  C  Y  T  S  *  Y  C  R  N  Q  G  D  *  *  Y  C  G  K  N  W :   C  G  K  I  *  S  C  C  Q  K  C  *  C  R  N  N  D  H  K  C  S  R  G  V  D  S  G  G  Y  K  A  P  *  E  N  P  K  E  S   : V  S  D  C  V  R  M  *  L  S  I  D  S  G  N  Q  Q  N  R  L  C  S  I  R  L  L  *  M  G  *  Y  M  W  L  L  L  Q  Q  A  H  S  N  M  C  C  Q  R  S  R  D  S  R  S  *  G  S  N  N  R  N  Y  G  S  Q  *  D  P  C  R  W  S  Q  M  D  S  Q  P   : E  T  M  *  A  A  Y  S  N  K  G  G  F  H  E  V  E  I  V  N  *  G  R  Y  A  L  *  </second_frame>
            <third_frame>   D  E  M  P  P  L  D  L  N  L  I  M  D  K  I  Y  G  M  L  H  D  L  D  N  A  L  E  T  A  N  Y  D  K  L  L  Q  S  G  L  Q  :  I  A  I  I  G  R  P  N  V  G  K  S  S  L  L  N  A  W  S  K  :  T  D  R  A  I  V  T  N  I  A  G  T  T  R  D  V  V  E  A  S  V  S  V  R  G  V  P  V  T  L  L  D  T  A  G  I  R  E  T  D  D  I  V  E  K  I   : G  V  E  R  S  E  A  V  A  R  N  A  D  V  V  I  M  T  I  S  A  A  E  G  W  T  P  E  D  T  K  L  L  E  R  I  Q  R  S  Q  :  F  Q  T  A  S  G  C  S  S  P  L  I  L  V  I  N  K  I  D  C  A  P  S  D  S  Y  E  W  V  N  T  C  G  F  S  F  N  K  H  I  P  T  C  A  V  N  G  Q  G  I  Q  D  L  E  A  A  I  I  E  I  M  G  L  N  K  I  P  V  G  G  R  R  W  T  V  N  Q  :  R  Q  C  E  Q  L  I  R  T  K  E  A  F  M  R  L  K  S  S  I  E  E  D  M  P  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112206" stop="112087"/>
                    <exon start="111838" stop="111779"/>
                    <exon start="110927" stop="110789"/>
                    <exon start="110188" stop="110070"/>
                    <exon start="108896" stop="108666"/>
                    <exon start="107723" stop="107643"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEMPPLDLNLIMDKIYGMLHDLDNALETANYDKLLQSGLQIAIIGRPNVGKSSLLNAWSKTDRAIVTNIAGTTRDVVEASVSVRGVPVTLLDTAGIRETDDIVEKIGVERSEAVARNADVVIMTISAAEGWTPEDTKLLERIQRSQFQTASGCSSPLILVINKIDCAPSDSYEWVNTCGFSFNKHIPTCAVNGQGIQDLEAAIIEIMGLNKIPVGGRRWTVNQRQCEQLIRTKEAFMRLKSSIEEDMPFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 182 chains have been computed
$ 
$ memory statistics:
$ 582288 bytes spliced alignments in total
$ 148 spliced alignments have been stored
$ 3934 bytes was the average size of a spliced alignment
$ 32600 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1811 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 201 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 17:36:24
-->
