<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:11:54"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548295" ref_strand="+" ref_description="SGN-E548295 [TUS-59-O5](-)">
      <seq>ggaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccacgatatggtcaagaacatatatatatatatatatatatgttaagatattagagtatgaatatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="11199" stop="10141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10438" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="468" r_length="453" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E548295" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCA-GATATGGTCAA-AACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCACGATATGGTCAAGAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287967" ref_strand="+" ref_description="SGN-E287967 [cLES-7-C8]">
      <seq>gaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccagatatggtcaaaacatatatatatatatatatatatgttaagatattagagtatgaatatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="11199" stop="10141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10438" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="465" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E287967" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E539893" ref_strand="+" ref_description="SGN-E539893 [TUS-59-O5]">
      <seq>ggaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccagatatggtcaaaacatatatatatatatatatatatgttaagatattagagtatgaatatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="11199" stop="10141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10438" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="466" r_length="451" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E539893" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249673" ref_strand="+" ref_description="SGN-E249673 [cLEF-56-L5]">
      <seq>ttttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="25886" stop="26763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26186" g_stop="26463" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E249673" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26186" e_stop="26463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTGGTGTTTGCCACAAAAATGCCAAGAAGGAGTGTTAGACAATTGGCATTTTTTCAGCTTATTATTATTTGTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTTTAGCTAGACTTAGTAAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAG-TAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E338242" ref_strand="+" ref_description="SGN-E338242 [cTOE-13-M11]">
      <seq>taatattttctttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="28270" stop="29255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28565" g_stop="28955" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="421" r_length="390" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E338242" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28565" e_stop="28955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTATTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCACGTATGTATTTTCTAAAATATTTTTATGATTTAAAATACAGTAGTATTCAATCACTAACAATTATCAGGAACTAAAGGCATATACAACTATTGGTTGAGTATGACATGTTATATAAAACTTCTGAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTCTGAATATTATTTTGATTGTTTTGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</genome_strand>
        <mrna_strand>GTT-CTTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E204533" ref_strand="-" ref_description="SGN-E204533 [cLEC-24-G13]">
      <seq>aatttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="29190" stop="30154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29477" g_stop="29830" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="379"/>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E204533" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204533" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="29477" e_stop="29830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTTCATTAT-CAAATGGTATGAAAGGACATTGGACTTGTTAATGTTGTCGACCAAATAATTTGACAAGTTTATAAATCCTCCATCAAAATACAAGAAGATAAAGTGATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTATCATGAAAATATGATGAATTTTAAAATCATGACAATGTACTTATAATGCAAATTTATGAAGTACATATAAATGATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCAAGATGTGATAAAATCATTTATGGGTTGAATATATGTCACAACTCACCTCTATGGGAG</genome_strand>
        <mrna_strand>AATTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCA-TTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="50340" stop="51424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50640" g_stop="51124" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50640" e_stop="51124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCAAGCCCGATCCGTTTTGGGTCCTTCCCGTCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCTGTGCCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAGATGACGAGTTTAAGGCTTTGGCTAATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGCAAATGGGTGTA-AAAATTAAACACAATGCAGATGACAGTATTTCTAGGTACAAGGCTCGTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="50765" stop="51665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51065" g_stop="51365" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51065" e_stop="51365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATAAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGTCGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGTAAGCCCCCCGTGCTTGATACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321788" ref_strand="+" ref_description="SGN-E321788 [cTOB-25-H3]">
      <seq>tctctctctccttccctttaatcgcacagtactctagagaccagacaagtgagtacaactacactctctctcaaactgagctttcttgtcggaaaattttcacgcttcccttatcgccggcgtctttctccgtttccggccgcatatatttggtgtggctttagattcaattcgacgactttgcaattcatgttgatttaagtttgctgtggaagtttcagtacctctttgtatgaccattcgaaagcttaatgattcggaaaaaagtgttcttgacttacaagcgaaagaggctaccaggttctgatctttttttggaaaatgggactcataatacacctactgagtgtatgaaatcaaaagctgtggcccctttgctggaggaagaggagaagtatgacaaccctagcttcaaggatggaaagaaagactttgaggataattctgaagaaaatcagtcctcaaagggttccaaagggcctctctctgaaggagaaccaaggaattcacagaagagattatgttcttgcattatttcaggcagtatatgtgatagtaaatgcacccagaagttttctctttccctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="63948" stop="67969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64248" g_stop="64389" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64390" i_stop="65243" i_length="854">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65244" g_stop="65538" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="437" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65539" i_stop="67516" i_length="1978">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67517" g_stop="67669" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="590" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E321788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64248" e_stop="64389"/>
          <exon e_start="65244" e_stop="65538"/>
          <exon e_start="67517" e_stop="67669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTCCTTCCCTTTAATCGCACAGTACTCTAGAGACCAGACAAGTGAGTACAACTACACTCTCTCTCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCGGTAAGCATAAATTCTTTCTTCCTTTTTCAACTTTCTCTTCTTTTTGTTAGAAAGATTTCATATTGTTATTTGCTTTGTGTCTGTAGACTGTAGAGTACTCATTATCTGTTATTTTTTCCTCTTAATTTTTCAGTTATAAAAGGGGAAAATTCCATTTTAATAACTTTATTTGCTGATAACTGTACTATTTCTCCTTTTTTTTTTTTTTACAAAAAATCTTGGATGAAGTGCATGTTGGTACTTCAAATTTCTTGGTGCTCTATGTTGAGCTAAGGTGATTTTTTTTTGTTTTTCTTTTGTGTTATTTTAAAGGTTTTGGTTTTATAAGTTATGGATTCTGTAAACTTTTACTCTTGCTTATTTAGGAATTCCTATAATCATCATTGTTGAATTGGAAGAGATAACCTTATACATATTAACCCTGAATATATACTCCATCCTTTCCATTCCTTATGATGTAGTTTGACCTACTCTTTGGTTTTTAAAATAAACAAAGATTTTTGAAATTTGTGGTAAAAAAATGAGGTTTATGTGACTATAACTCATTTCATTAGGGTAAAATGTGTATTTAGAAGTTAAATTGTTGTTAAATGTAAAAATGTGTCTTTTTTTTGGACCGACTAGAAAGGGAAGTGAGTCATATAAATTAGGATAGAGGGAGCAGTTATTTGCATGGGTTTAGGTTGAAGAGTAAGTGTTGCTTATACTTTTTCTCACGTTGTTTGCCCAAGATTGTTAATAGCACACAAAGGTAAAATTCAATAACGATTTCATGATGAGGTTAAAAGTGGTTCGAAAAATGTTGAGCTCACATGATGTCATTTGATGTAGTTTCTTTTTTCTGATTTTTGCAGCATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACTGAGTGTATGAAATCAAAAGCTGTGGCCCCTTTGCTGGAGGAAGAGGAGAAGTATGACAACCCTAGCTTCAAGGATGGAAAGAAAGACTTTGAGGTGAGATCTTTGATATACCGTTTGGTTTAGGAAACCAAACATTATATCGGCGGCATGAGGTCTTTGTTGTGCTTGTGATTGAGGTGTAGTAGTAATAGTAGTAGTTGTTATATGAGGTCCTTTCTTGTGGCTTGATTTTCTTTGGATAATCATCTTCTAATTTATGTCGTCACATTTGTTCAGGAAACTGTGGCAACTATTCTGAATTAAGTCGTTATCTACATATGGATGATCATCTCCTAGATTTCAACTAAGTAGTGATTCTTCATAATCAGTAAACACAGATGTGTAATGTGGTGCATGATCCTGGCACTTGTATCTCTTACTTACAAACGTACATTATTCAAATGCTAATTATATGATTATTAGCTACTGTCTTTAATGGCCGTCCAATCTGTGCTTCTCTTTCTCTCTCTCATTGTTTTGCTTTGTGGAAATTGTTTACTTGCAATTGGAATGACAACTAGGATGGAGAGTATTTTAGGGTAAATTCAAGAGTTCATGGTGTTCTTCTTGTGATGAATTCCTTAAGTTGTATATACTGAAACATGTCTGCTTCTGCTTACATAATAAAACTGGTAGGGTGGGTGCACACTGACTGAAACAATAGTGACCAAAGAACTCCTTATGACAGGGTGTGGGTTTAGAAATTGGCGTGGGAAGTGTTAGAGCTTAGACTTGGGTAGAGTTTTCATAAGTAGAACTTTATTTTTCACTTTCTGTCAGAAAACTAAGTTTTTTATAGCTCGGAAAGATATTGTACATGGTCCAAAGTTGATGTAGTGGTTGAAGCATGGGAGTGACAATTCAGGGATCCCAAGGTCAAATCCCAGCTACAACCCTTGATGTGAGCTCATTTTCTCTGAACGTAGCGAGCAGGATTACTTTCGCGATCTTGTGCTAGTGGATTCAACAAGTTGCCCAGTTGAATGGTTGAGGAGCGTGCAAGTTGGTCCAGACATATCAATTAAGAAAAATCTCTCTTTTGTACGAGATAAGCAATGACTTGTTGAGTTTATAAGCTACTACTAGATCAAACAAACCGTTGCTGAATTATGTTGGTTGAACTTTTTAAATAGGGTGAATATAATCTTCTCCCTCTTTCTTCCTACTATCAAGTTAATTGTGAAGATGCAGTCATCCCCTTTATTTTCTGAGTTCCTAGTATTTTTTTTTTTGATGACAGTTCCTAGTATTTAACTTGTAAAACTATTGGAAATGCTTTCTTCAATCGTGACTGATCTGTTAACACAAGACAACCTTGTTAATCTGAACGTAAATCAATTTAACACAAGCATTCACACAACTTGTCAATTTTTTTTCTAGGCCTTTGTTACTAGTGTGCTATCCATTTTCATCGGTCTTCTCACATCTACACCCACCTTCAAAAATCCTGCTGCATCACTCATCTGATCTCTATACTTCTTTCTTTTCCTGCTGCTTCGTTGTAGCCTAGCTGGACCACCATAATCCCTTTAAATTTCTTCAAGTTACCCTATGCACATTTCCTGCTTCCTCTATCTTGCATTATAAAGCAAGAGAAAAGAAAGATAAAGAGTAGAGAAAAATATAGAACTGAACAAGCGTGCACACATCTTATGCAGAAACAACTGATTGGACGTAGTTGCATTTCAACATTCTCTTTTAAGCTTACTTCTGTATTTTTAAGGATGAAATAGTGCGCACCATTGAAAAATTATTTGTATCAACTTGCACATTTAATTGCCTGTTCCTTGTCAAAATCAAGATAGCAGATGGGTAATTGAGTTATTGAAATTATTCTATACTAGTATGATGCGTTCAGGATTTTTATCATGACTTTTTGGACTGTGACTGTTAGATAGTCAAGCTTAGCCTGAGAGATGGATTTGAGCTTCAATGTGACTTTTGGTGGCATTGTGATTATGATACTGGTGGTTAGAAAAGATGTCTTACATGTAAACTTCCCAAGTTGCTTAATTGCCATTCATCTTTGCAGGATAATTCTGAAGAAAATCAGTCCTCAAAGGGTTCCAAAGGGCCTCTCTCTGAAGGAGAACCAAGGAATTCACAGAAGAGATTATGTTCTTGCATTATTTCAGGCAGTATATGTGATAGTAAATGCACCCAGAAGTTTTCTCTTTCCCTGTTG</genome_strand>
        <mrna_strand>TCTCTCTCTCCTTCCCTTTAATCGCACAGTACTCTAGAGACCAGACAAGTGAGTACAACTACACTCTCTCTCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACTGAGTGTATGAAATCAAAAGCTGTGGCCCCTTTGCTGGAGGAAGAGGAGAAGTATGACAACCCTAGCTTCAAGGATGGAAAGAAAGACTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTCTGAAGAAAATCAGTCCTCAAAGGGTTCCAAAGGGCCTCTCTCTGAAGGAGAACCAAGGAATTCACAGAAGAGATTATGTTCTTGCATTATTTCAGGCAGTATATGTGATAGTAAATGCACCCAGAAGTTTTCTCTTTCCCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287799" ref_strand="+" ref_description="SGN-E287799 [cLES-19-O23]">
      <seq>tcaaactgagctttcttgtcggaaaattttcacgcttcccttatcgccggcgtctttctccgtttccggccgcatatatttggtgtggctttagattcaattcgacgactttgcaattcatgttgatttaagtttgctgtggaagtttcagtacctctttgtatgaccattcgaaagcttaatgattcggaaaaaagtgttcttgacttacaagcgaaagaggctaccaggttctgatctttttttggaaaatgggactcataatacacctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="64018" stop="65745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64318" g_stop="64389" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64390" i_stop="65243" i_length="854">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65244" g_stop="65445" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="274" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E287799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>274</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64318" e_stop="64389"/>
          <exon e_start="65244" e_stop="65445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCGGTAAGCATAAATTCTTTCTTCCTTTTTCAACTTTCTCTTCTTTTTGTTAGAAAGATTTCATATTGTTATTTGCTTTGTGTCTGTAGACTGTAGAGTACTCATTATCTGTTATTTTTTCCTCTTAATTTTTCAGTTATAAAAGGGGAAAATTCCATTTTAATAACTTTATTTGCTGATAACTGTACTATTTCTCCTTTTTTTTTTTTTTACAAAAAATCTTGGATGAAGTGCATGTTGGTACTTCAAATTTCTTGGTGCTCTATGTTGAGCTAAGGTGATTTTTTTTTGTTTTTCTTTTGTGTTATTTTAAAGGTTTTGGTTTTATAAGTTATGGATTCTGTAAACTTTTACTCTTGCTTATTTAGGAATTCCTATAATCATCATTGTTGAATTGGAAGAGATAACCTTATACATATTAACCCTGAATATATACTCCATCCTTTCCATTCCTTATGATGTAGTTTGACCTACTCTTTGGTTTTTAAAATAAACAAAGATTTTTGAAATTTGTGGTAAAAAAATGAGGTTTATGTGACTATAACTCATTTCATTAGGGTAAAATGTGTATTTAGAAGTTAAATTGTTGTTAAATGTAAAAATGTGTCTTTTTTTTGGACCGACTAGAAAGGGAAGTGAGTCATATAAATTAGGATAGAGGGAGCAGTTATTTGCATGGGTTTAGGTTGAAGAGTAAGTGTTGCTTATACTTTTTCTCACGTTGTTTGCCCAAGATTGTTAATAGCACACAAAGGTAAAATTCAATAACGATTTCATGATGAGGTTAAAAGTGGTTCGAAAAATGTTGAGCTCACATGATGTCATTTGATGTAGTTTCTTTTTTCTGATTTTTGCAGCATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACT</genome_strand>
        <mrna_strand>TCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542934" ref_strand="+" ref_description="SGN-E542934 [TUS-64-H21]">
      <seq>tgcgatcttaaggattctgattcctctgatttggttaaactgagtctggaagaagttgccacaccaaaagacatctctctgatcccctctgtaaatgcagttagtacaagtaaattgtcttccagtctgattacttttcagcgaagagctaagcgggacaaggatgcaggccgggcatatgccaagggcaatcttgaagctgaagatgttgcttgcttatcagatgaaaatactgcatgtcttgtcgctcctcatgactctgataaatcagttgctaagagttgctcagtggatctttcagcagattttaagcatccagagacaaccaacggaggtgagaattatcaatgtgcttgtgctggatcacctgcacagatgaagatattgttagatgttaatgaacagcctatcttagtgaaggaagctcagccaatcgatgaagtagctgatccaaattctggagtaggcttctctggtttggacgacggtgttgcttcagatactttcgagaagtgcatcatttcatagccctaaggacccttcttttgatggtttgtccagaactgatgtgccaatatcgtctcccttagaggttgcaagtaacactggttcccaagctttagatatgtctataccttgtgatagtgatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="67436" stop="69970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67736" g_stop="68056" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69216" g_stop="69277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="383" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69406" g_stop="69662" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="641" r_length="258" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69663" i_stop="69781" i_length="119">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69782" g_stop="69794" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="654" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E542934" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67736" e_stop="68056"/>
          <exon e_start="69216" e_stop="69277"/>
          <exon e_start="69406" e_stop="69662"/>
          <exon e_start="69782" e_stop="69794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAGGTTAATCCTTATCCTAGACAAGCCACTTCATTGCTAGTAATGAAGAGAACTTTTGTCACTTGATTTTTAGATGATATTAGAAAGTGTGCCATATTAACCTTATTCATAATAATTCATAAACCATCTGAGGCATATCTAACCAGTTTTCGGAGATCAATGCTGATTATTCATATTCTTTTCTAATTTATTTTATAGTTATTTTCATTCATAAACTAGAAGTGCAAAAATGGCAGAAACAGAATACAAATAGATTATGCATTTGTAGGATAGCCATCGTATTTCTCTAGATTCTTACTTTGATTACATGAGACAAATATCTATACTCATCCCATTTTTCCTTCGACCGTTATTAATATTATATTCTGTGTTTCTTGTACAAGTTCTTAGTAACCACGATCATGCAGATTAAAGCTAAATCTTTAGACTCTGCTGACTTTTGCAGTATGGGGTATTAAATTGATGTCTGGATTTTTTTTTATGAGGGAACTTAGACTAATGTTTCTTGTTTTTCATCTAATTTCTTTGTTTTATTTCTATGTATGTTCGGATTTAGTTTCAAGAGATATTATTTTGGGATGATCTGAGATTTTTTTTTTTTTTAAATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAACAACTGTGCAAAAACAAGTCATTCTGTTTCTATGTATGTTTGGTTTTAGTTTTAGGAGATATTATTTTGGGATGTTCTGAGAGTTTGTTTTGTTTTTATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAATAACTGTGCAAAAACAAAACATTCTGTTTCTCTGTCCAGACAAGGCTCAACTAAAGTATAGTTTCGAATGGATTATGTGAATTTACTTGCTTCCCTATAACTTCAGCTACTAGCCTACAGGTTCTGTAATTTGAGAGACAAATTCACTTTGCATGAGACTTTTTTTTCTGCATCCTACTTGAACTGGTTTGCTTGGTTTTTCTCCTTTGACATGTTAAGCTGTGTGAAGGCATTGATAAATCAGGTTGGTTGAACCTGCTTGCCGCTCAGTTCGTCTTCTGTCCTAAACACCAGATGAAGATTACATGCTAATTATTCTCTAGAAAATCATGTGATTCCAATGTTAACCAAGTTTTATTTTGTTATAGACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGATGTAAGCTTAACTATCGTCTACTCTTGCCTTGTAGTGAATCTAGGGGACAGGTTTAATGAAAGATTCTTGTCTGGAAATGTAACCCAGTTGAAGATATTCAATTTTAATTCTTGGATTTGCTTGTACAGATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGT-CATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTGGTATGTATTTTTATTTGGTTTTATCCTCCTGGATTTAAGATATATTGTTTTTATAGGGACTCATGTTCATGAATTTTATGTGTCTCAGTATGCTTCTGTTTTTAAATTACCATGTTCAGATAGTGATGACAC</genome_strand>
        <mrna_strand>TGCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGATGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT................................................................................................................................ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCGAGAAGTGCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGATGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATGTCTATACCTTGTG.......................................................................................................................ATAGTGATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302952" ref_strand="+" ref_description="SGN-E302952 [cLEW-26-L13]">
      <seq>gcgatcttaaggattctgattcctctgatttggttaaactgagtctggaagaagttgccacaccaaaagacatctctctgatcccctctgtaaatgcagttagtacaagtaaattgtcttccagtctgattacttttcagcgaagagctaagcgggacaaggatgcaggccgggcatatgccaagggcaatcttgaagctgaagatgttgcttgcttatcagttgaaaatactgcatgtcttgtcgctcctcatgactctgataaatcagttgctaagagttgctcagtggatctttcagcagattttaagcatccagagacaaccaacggaggtgagaattatcaatgtgcttgtgctggatcacctgcacagatgaagatattgttagatgttaatgaacagcctatcttagtgaaggaagctcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="67437" stop="69752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67737" g_stop="68056" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69216" g_stop="69277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="382" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69406" g_stop="69452" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="429" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E302952" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67737" e_stop="68056"/>
          <exon e_start="69216" e_stop="69277"/>
          <exon e_start="69406" e_stop="69452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAGGTTAATCCTTATCCTAGACAAGCCACTTCATTGCTAGTAATGAAGAGAACTTTTGTCACTTGATTTTTAGATGATATTAGAAAGTGTGCCATATTAACCTTATTCATAATAATTCATAAACCATCTGAGGCATATCTAACCAGTTTTCGGAGATCAATGCTGATTATTCATATTCTTTTCTAATTTATTTTATAGTTATTTTCATTCATAAACTAGAAGTGCAAAAATGGCAGAAACAGAATACAAATAGATTATGCATTTGTAGGATAGCCATCGTATTTCTCTAGATTCTTACTTTGATTACATGAGACAAATATCTATACTCATCCCATTTTTCCTTCGACCGTTATTAATATTATATTCTGTGTTTCTTGTACAAGTTCTTAGTAACCACGATCATGCAGATTAAAGCTAAATCTTTAGACTCTGCTGACTTTTGCAGTATGGGGTATTAAATTGATGTCTGGATTTTTTTTTATGAGGGAACTTAGACTAATGTTTCTTGTTTTTCATCTAATTTCTTTGTTTTATTTCTATGTATGTTCGGATTTAGTTTCAAGAGATATTATTTTGGGATGATCTGAGATTTTTTTTTTTTTTAAATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAACAACTGTGCAAAAACAAGTCATTCTGTTTCTATGTATGTTTGGTTTTAGTTTTAGGAGATATTATTTTGGGATGTTCTGAGAGTTTGTTTTGTTTTTATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAATAACTGTGCAAAAACAAAACATTCTGTTTCTCTGTCCAGACAAGGCTCAACTAAAGTATAGTTTCGAATGGATTATGTGAATTTACTTGCTTCCCTATAACTTCAGCTACTAGCCTACAGGTTCTGTAATTTGAGAGACAAATTCACTTTGCATGAGACTTTTTTTTCTGCATCCTACTTGAACTGGTTTGCTTGGTTTTTCTCCTTTGACATGTTAAGCTGTGTGAAGGCATTGATAAATCAGGTTGGTTGAACCTGCTTGCCGCTCAGTTCGTCTTCTGTCCTAAACACCAGATGAAGATTACATGCTAATTATTCTCTAGAAAATCATGTGATTCCAATGTTAACCAAGTTTTATTTTGTTATAGACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGATGTAAGCTTAACTATCGTCTACTCTTGCCTTGTAGTGAATCTAGGGGACAGGTTTAATGAAAGATTCTTGTCTGGAAATGTAACCCAGTTGAAGATATTCAATTTTAATTCTTGGATTTGCTTGTACAGATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGC</genome_strand>
        <mrna_strand>GCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT................................................................................................................................ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E306181" ref_strand="+" ref_description="SGN-E306181 [cLEY-13-O13]">
      <seq>attacttttcagcgaagagctaagcgggacaaggatgcaggccgggcatatgccaagggcaatcttgaagctgaagatgttgcttgcttatcagttgaaaatactgcatgtcttgtcgctcctcatgactctgataaatcagttgctaagagttgctcagtggatctttcagcagattttaagcatccagagacaaccaacggaggtgagaattatcaatgtgcttgtgctggatcacctgcacagatgaagatattgttagatgttaatgaacagcctatcttagtgaaggaagctcagccaatcgatgaagtagctgatccaaattctggagtaggcttctctggtttggacgacggtgttgcttcagatactttcaagaagtcatcatttcatagccctaaggacccttcttttgatggtttgtccagaactgaagtgccaatatcgtctcccttagaggttgcaagtaacactggttcccaagctttagatatatctataccttgtgatagtgatgacacaatggactgcaataggtcggaacaagcatctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="67565" stop="70133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67865" g_stop="68056" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69216" g_stop="69277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="254" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69406" g_stop="69662" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="511" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69663" i_stop="69781" i_length="119">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69782" g_stop="69833" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="563" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E306181" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67865" e_stop="68056"/>
          <exon e_start="69216" e_stop="69277"/>
          <exon e_start="69406" e_stop="69662"/>
          <exon e_start="69782" e_stop="69833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAGGTTAATCCTTATCCTAGACAAGCCACTTCATTGCTAGTAATGAAGAGAACTTTTGTCACTTGATTTTTAGATGATATTAGAAAGTGTGCCATATTAACCTTATTCATAATAATTCATAAACCATCTGAGGCATATCTAACCAGTTTTCGGAGATCAATGCTGATTATTCATATTCTTTTCTAATTTATTTTATAGTTATTTTCATTCATAAACTAGAAGTGCAAAAATGGCAGAAACAGAATACAAATAGATTATGCATTTGTAGGATAGCCATCGTATTTCTCTAGATTCTTACTTTGATTACATGAGACAAATATCTATACTCATCCCATTTTTCCTTCGACCGTTATTAATATTATATTCTGTGTTTCTTGTACAAGTTCTTAGTAACCACGATCATGCAGATTAAAGCTAAATCTTTAGACTCTGCTGACTTTTGCAGTATGGGGTATTAAATTGATGTCTGGATTTTTTTTTATGAGGGAACTTAGACTAATGTTTCTTGTTTTTCATCTAATTTCTTTGTTTTATTTCTATGTATGTTCGGATTTAGTTTCAAGAGATATTATTTTGGGATGATCTGAGATTTTTTTTTTTTTTAAATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAACAACTGTGCAAAAACAAGTCATTCTGTTTCTATGTATGTTTGGTTTTAGTTTTAGGAGATATTATTTTGGGATGTTCTGAGAGTTTGTTTTGTTTTTATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAATAACTGTGCAAAAACAAAACATTCTGTTTCTCTGTCCAGACAAGGCTCAACTAAAGTATAGTTTCGAATGGATTATGTGAATTTACTTGCTTCCCTATAACTTCAGCTACTAGCCTACAGGTTCTGTAATTTGAGAGACAAATTCACTTTGCATGAGACTTTTTTTTCTGCATCCTACTTGAACTGGTTTGCTTGGTTTTTCTCCTTTGACATGTTAAGCTGTGTGAAGGCATTGATAAATCAGGTTGGTTGAACCTGCTTGCCGCTCAGTTCGTCTTCTGTCCTAAACACCAGATGAAGATTACATGCTAATTATTCTCTAGAAAATCATGTGATTCCAATGTTAACCAAGTTTTATTTTGTTATAGACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGATGTAAGCTTAACTATCGTCTACTCTTGCCTTGTAGTGAATCTAGGGGACAGGTTTAATGAAAGATTCTTGTCTGGAAATGTAACCCAGTTGAAGATATTCAATTTTAATTCTTGGATTTGCTTGTACAGATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTGGTATGTATTTTTATTTGGTTTTATCCTCCTGGATTTAAGATATATTGTTTTTATAGGGACTCATGTTCATGAATTTTATGTGTCTCAGTATGCTTCTGTTTTTAAATTACCATGTTCAGATAGTGATGACACAATGGACTGCAATAGGTCGGAACAAGCATCTGATGAACG</genome_strand>
        <mrna_strand>ATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT................................................................................................................................ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTG.......................................................................................................................ATAGTGATGACACAATGGACTGCAATAGGTCGGAACAAGCATCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325994" ref_strand="+" ref_description="SGN-E325994 [cTOD-1-G13]">
      <seq>gggcatatgccaagggcaatcttgaagctgaagatgttgcttgcttatcagttgaaaatactgcatgtcttgtcgctcctcatgactctgataaatcagttgctaagagttgctcagtggatctttcagcagattttaagcatccagagacaaccaacggaggtgagaattatcaatgtgcttgtgctggatcacctgcacagatgaagatattgttagatgttaatgaacagcctatcttagtgaaggaagctcagccaatcgatgaagtagctgatccaaattctggagtaggcttctctggtttggacgacggtgttgcttcagatactttcaagaagtcatcatttcatagccctaaggacccttcttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="67608" stop="69872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67908" g_stop="68056" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69216" g_stop="69277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69406" g_stop="69572" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="378" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E325994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67908" e_stop="68056"/>
          <exon e_start="69216" e_stop="69277"/>
          <exon e_start="69406" e_stop="69572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAGGTTAATCCTTATCCTAGACAAGCCACTTCATTGCTAGTAATGAAGAGAACTTTTGTCACTTGATTTTTAGATGATATTAGAAAGTGTGCCATATTAACCTTATTCATAATAATTCATAAACCATCTGAGGCATATCTAACCAGTTTTCGGAGATCAATGCTGATTATTCATATTCTTTTCTAATTTATTTTATAGTTATTTTCATTCATAAACTAGAAGTGCAAAAATGGCAGAAACAGAATACAAATAGATTATGCATTTGTAGGATAGCCATCGTATTTCTCTAGATTCTTACTTTGATTACATGAGACAAATATCTATACTCATCCCATTTTTCCTTCGACCGTTATTAATATTATATTCTGTGTTTCTTGTACAAGTTCTTAGTAACCACGATCATGCAGATTAAAGCTAAATCTTTAGACTCTGCTGACTTTTGCAGTATGGGGTATTAAATTGATGTCTGGATTTTTTTTTATGAGGGAACTTAGACTAATGTTTCTTGTTTTTCATCTAATTTCTTTGTTTTATTTCTATGTATGTTCGGATTTAGTTTCAAGAGATATTATTTTGGGATGATCTGAGATTTTTTTTTTTTTTAAATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAACAACTGTGCAAAAACAAGTCATTCTGTTTCTATGTATGTTTGGTTTTAGTTTTAGGAGATATTATTTTGGGATGTTCTGAGAGTTTGTTTTGTTTTTATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAATAACTGTGCAAAAACAAAACATTCTGTTTCTCTGTCCAGACAAGGCTCAACTAAAGTATAGTTTCGAATGGATTATGTGAATTTACTTGCTTCCCTATAACTTCAGCTACTAGCCTACAGGTTCTGTAATTTGAGAGACAAATTCACTTTGCATGAGACTTTTTTTTCTGCATCCTACTTGAACTGGTTTGCTTGGTTTTTCTCCTTTGACATGTTAAGCTGTGTGAAGGCATTGATAAATCAGGTTGGTTGAACCTGCTTGCCGCTCAGTTCGTCTTCTGTCCTAAACACCAGATGAAGATTACATGCTAATTATTCTCTAGAAAATCATGTGATTCCAATGTTAACCAAGTTTTATTTTGTTATAGACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGATGTAAGCTTAACTATCGTCTACTCTTGCCTTGTAGTGAATCTAGGGGACAGGTTTAATGAAAGATTCTTGTCTGGAAATGTAACCCAGTTGAAGATATTCAATTTTAATTCTTGGATTTGCTTGTACAGATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATG</genome_strand>
        <mrna_strand>GGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT................................................................................................................................ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542933" ref_strand="+" ref_description="SGN-E542933 [TUS-64-H21](-)">
      <seq>cagttctcgaattatgagcagagtgtctgaagtaggtaatttgcctcactggctcaaggaagtggttgcaatcccacccaggcctcctggatttgccccagattcttcatggtttatccatccatggattggtccaccgttttctgaacctaagcgagctcactgtgaatcaaggaacagattgagcgacttgtacactacaccaaaaactgagctgaataatggtaatgctgattgtgctcatctccctataagagaagggaagcaacattgtaagtcagaagcagataaaaaagttgagctgattgtcatcaatagcgacgcctcatcagaggagacaatatcagatgattgtaatgtaaggcattagcttaagttgggatttcatagttcaacaatggttaaacttgtataaaagtagtttaagtatctcagctatttctcgagggtgagattagttgaatcaggtagtttttattttcccaaattcttattttagctatttgctggtaagctatgttgtaaactcactttaggtcctaattagggattggatcaaagccaagcaaatccaaactccttcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="70712" stop="71899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71012" g_stop="71605" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E542933" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71012" e_stop="71605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTCGAATTATGAGCAGAGTGTCTGAAGTAGGTAATTTGCCTCACTGGCTCAAGGAAGTGGTTGCAATCCCACCCAGGCCTCCTGGATTTGCCCCAGATTCTTCATGGTTTATCCATCCATGGATTGGTCCACCGTTTTCTGAACCTAAGCGAGCTCACTGTGAATCAAGGAACAGATTGAGCGACTTGTACACTACACCAAAAACTGAGCTGAATAATGGTAATGCTGATTGTGCTCATCTCCCTATAAGAGAAGGGAAGCAACATTGTAAGTCAGAAGCAGATAAAAAAGTTGAGCTGATTGTCATCAATAGCGACGCCTCATCAGAGGAGACAATATCAGATGATTGTAATGTAAGGCATTAGCTTAAGTTGGGATTTCATAGTTCAACAATGGTTAAACTTGTATAAAAGTAGTTTAAGTATCTCAGCTATTTCTCGAGGGTGAGATTAGTTGAATCAGGTAGTTTTTATTTTCCCAAATTCTTATTTTAGCTATTTGCTGGTAAGCTATGTTGTAAACTCACTTTAGGTCCTAATTAGGGATTGGATCAAAGCCAAGCAAATCCAAACTCCTTCATAAACTCAAG</genome_strand>
        <mrna_strand>CAGTTCTCGAATTATGAGCAGAGTGTCTGAAGTAGGTAATTTGCCTCACTGGCTCAAGGAAGTGGTTGCAATCCCACCCAGGCCTCCTGGATTTGCCCCAGATTCTTCATGGTTTATCCATCCATGGATTGGTCCACCGTTTTCTGAACCTAAGCGAGCTCACTGTGAATCAAGGAACAGATTGAGCGACTTGTACACTACACCAAAAACTGAGCTGAATAATGGTAATGCTGATTGTGCTCATCTCCCTATAAGAGAAGGGAAGCAACATTGTAAGTCAGAAGCAGATAAAAAAGTTGAGCTGATTGTCATCAATAGCGACGCCTCATCAGAGGAGACAATATCAGATGATTGTAATGTAAGGCATTAGCTTAAGTTGGGATTTCATAGTTCAACAATGGTTAAACTTGTATAAAAGTAGTTTAAGTATCTCAGCTATTTCTCGAGGGTGAGATTAGTTGAATCAGGTAGTTTTTATTTTCCCAAATTCTTATTTTAGCTATTTGCTGGTAAGCTATGTTGTAAACTCACTTTAGGTCCTAATTAGGGATTGGATCAAAGCCAAGCAAATCCAAACTCCTTCATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372870" ref_strand="-" ref_description="SGN-E372870 [TUS-32-N20]">
      <seq>ttttttttttttttttttttttacgtggaaaccctcctaaataagagaaaaaccacgacccaagagaagcaacgaatatcactatagtaaggattttacacttgtatgtttgagtaaaactctaaagatcactacacattcaaaagaaataacactcttttgatttttccatctcactacaatatcgctcacactctctatttttccttagagattattttcctctgtgatgtctcactcttcttttctctcttttgtaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="64277" stop="125715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124202" g_stop="124218" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124219" i_stop="125169" i_length="951">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125170" g_stop="125415" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="263" r_length="246" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E372870" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372870" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124202" e_stop="124218"/>
          <exon e_start="125170" e_stop="125415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTATGTATTATGTATGCTTAAAAATGTGATAACTTATGCACGTCATACTCGATGAATCTTCTTTGAGAGAATGAATGGATTTCATATGTTCATATCCTCAATTGGAATTGGACTACATATTTGCATGTAAAGTCTTTGATTTTGAACAAATTGTACTTTGATTGAATGAGTTTTAGATTCTGATTAGACCTTCTAACCAAATCTTAGTGTAACCCTGTCCAATTAGTGTTGTTAAGGTATTGAGTCTGCATGGTGTACGGTGAGTTGTTGTCGAACAAAAGTTTGGTATAAGATGGTTACTATGTTTTAGCTACATTTTGGGGATCATTTCACATATATTTTGAGAAAAATGATACGGATAAGCTAATATACAAGTGTTTGGGATGAAACAAAGTACATAGGTACTTGTGTTCCACTTAAGGATTTGAGCTCTTACGGTTATAATCTACTTACATAGGTTTAAAATGGTTATGCGGGGCGGAGCGGAGCGAGGGGGTAGAGTGGGTTGAAAGTGAAAAAATAATTGTTAATGCAAGGTGGAGCAGGGCGGGTTAAAATTATTGCGTGTTAAGTTTCACCCATTTGCCCCGCCCCGCCCCATGGCCATTTGAATTTCAACATCTAGGATACCATAACTCTAGATCTTCGTAGATTAAAAATCATTCAAATAATTGCTAATGCAAGGTGGAGCAGAGCGGGTTAAAATTATTGCGGGTTAAGTTTCACCCACCCGCCCCGCCCCATGGCCATTTTAATTTCAAGATCTAGGATACCATAATTCTAGTTCTTCATAGATTAAAAATCATTCTAAAATAGTCCCAACAAACCCTATTTGAAATAGTGATCATAATGTTGGGAATAAATCTGTAACAGAAATAATATTTGCAGTAATAAAGGCGATAAATGCAGAACACAACAATGCGGTTAATCAACAAGAATAAAAGAGAAATAATGACACCAAGATTTTATGTGGAAACCCTCCTAAATAAGGGAAAAACCACGACCCGAGAGGAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTCTGAGTAAAACTACAAAGACCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCACATCACTACAATATCGCTCACACTCTCTATTTTTCCTCATAGATTATTTTCCTCTTTGATGCCTCACTCTTCTTTTCTCTCCTTTTTAATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACGTGGAAACCCTCCTAAATAAGAGAAAAACCACGACCCAAGAGAAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTTTGAGTAAAACTCTAAAGATCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCATCTCACTACAATATCGCTCACACTCTCTATTTTTCCTTAGAGATTATTTTCCTCTGTGATGTCTCACTCTTCTTTTCTCTCTTTTGTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E378778" ref_strand="-" ref_description="SGN-E378778 [TUS-32-N20]">
      <seq>ttttttttttttttttttttttacgtggaaaccctcctaaataagagaaaaaccacgacccaagagaagcaacgaatatcactatagtaaggattttacacttgtatgtttgagtaaaactctaaagatcactacacattcaaaagaaataacactcttttgatttttccatctcactacaatatcgctcacactctctatttttccttagagattattttcctctgtgatgtctcactcttcttttctctcttttgtaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="64277" stop="125715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124202" g_stop="124218" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.588"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124219" i_stop="125169" i_length="951">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125170" g_stop="125415" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="263" r_length="246" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E378778" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378778" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124202" e_stop="124218"/>
          <exon e_start="125170" e_stop="125415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTTATGTATTATGTATGCTTAAAAATGTGATAACTTATGCACGTCATACTCGATGAATCTTCTTTGAGAGAATGAATGGATTTCATATGTTCATATCCTCAATTGGAATTGGACTACATATTTGCATGTAAAGTCTTTGATTTTGAACAAATTGTACTTTGATTGAATGAGTTTTAGATTCTGATTAGACCTTCTAACCAAATCTTAGTGTAACCCTGTCCAATTAGTGTTGTTAAGGTATTGAGTCTGCATGGTGTACGGTGAGTTGTTGTCGAACAAAAGTTTGGTATAAGATGGTTACTATGTTTTAGCTACATTTTGGGGATCATTTCACATATATTTTGAGAAAAATGATACGGATAAGCTAATATACAAGTGTTTGGGATGAAACAAAGTACATAGGTACTTGTGTTCCACTTAAGGATTTGAGCTCTTACGGTTATAATCTACTTACATAGGTTTAAAATGGTTATGCGGGGCGGAGCGGAGCGAGGGGGTAGAGTGGGTTGAAAGTGAAAAAATAATTGTTAATGCAAGGTGGAGCAGGGCGGGTTAAAATTATTGCGTGTTAAGTTTCACCCATTTGCCCCGCCCCGCCCCATGGCCATTTGAATTTCAACATCTAGGATACCATAACTCTAGATCTTCGTAGATTAAAAATCATTCAAATAATTGCTAATGCAAGGTGGAGCAGAGCGGGTTAAAATTATTGCGGGTTAAGTTTCACCCACCCGCCCCGCCCCATGGCCATTTTAATTTCAAGATCTAGGATACCATAATTCTAGTTCTTCATAGATTAAAAATCATTCTAAAATAGTCCCAACAAACCCTATTTGAAATAGTGATCATAATGTTGGGAATAAATCTGTAACAGAAATAATATTTGCAGTAATAAAGGCGATAAATGCAGAACACAACAATGCGGTTAATCAACAAGAATAAAAGAGAAATAATGACACCAAGATTTTATGTGGAAACCCTCCTAAATAAGGGAAAAACCACGACCCGAGAGGAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTCTGAGTAAAACTACAAAGACCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCACATCACTACAATATCGCTCACACTCTCTATTTTTCCTCATAGATTATTTTCCTCTTTGATGCCTCACTCTTCTTTTCTCTCCTTTTTAATTC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACGTGGAAACCCTCCTAAATAAGAGAAAAACCACGACCCAAGAGAAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTTTGAGTAAAACTCTAAAGATCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCATCTCACTACAATATCGCTCACACTCTCTATTTTTCCTTAGAGATTATTTTCCTCTGTGATGTCTCACTCTTCTTTTCTCTCTTTTGTAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372869" ref_strand="-" ref_description="SGN-E372869 [TUS-32-N20](-)">
      <seq>tttttttttttttttttttttacgtggaaaccctcctaaataagagaaaaaccacgacccaagagaagcaacgaatatcactatagtaaggattttacacttgtatgtttgagtaaaactctaaagatcactacacattcaaaagaaataacactcttttgatttttccatctcactacaatatcgctcacactctctatttttccttaaagattattttcctctgtgatgtctcactcttcttttctctcttttgtaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="64277" stop="125716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124203" g_stop="124218" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.562"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124219" i_stop="125169" i_length="951">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125170" g_stop="125416" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="263" r_length="247" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-E372869" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372869" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="124203" e_stop="124218"/>
          <exon e_start="125170" e_stop="125416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTATGTATTATGTATGCTTAAAAATGTGATAACTTATGCACGTCATACTCGATGAATCTTCTTTGAGAGAATGAATGGATTTCATATGTTCATATCCTCAATTGGAATTGGACTACATATTTGCATGTAAAGTCTTTGATTTTGAACAAATTGTACTTTGATTGAATGAGTTTTAGATTCTGATTAGACCTTCTAACCAAATCTTAGTGTAACCCTGTCCAATTAGTGTTGTTAAGGTATTGAGTCTGCATGGTGTACGGTGAGTTGTTGTCGAACAAAAGTTTGGTATAAGATGGTTACTATGTTTTAGCTACATTTTGGGGATCATTTCACATATATTTTGAGAAAAATGATACGGATAAGCTAATATACAAGTGTTTGGGATGAAACAAAGTACATAGGTACTTGTGTTCCACTTAAGGATTTGAGCTCTTACGGTTATAATCTACTTACATAGGTTTAAAATGGTTATGCGGGGCGGAGCGGAGCGAGGGGGTAGAGTGGGTTGAAAGTGAAAAAATAATTGTTAATGCAAGGTGGAGCAGGGCGGGTTAAAATTATTGCGTGTTAAGTTTCACCCATTTGCCCCGCCCCGCCCCATGGCCATTTGAATTTCAACATCTAGGATACCATAACTCTAGATCTTCGTAGATTAAAAATCATTCAAATAATTGCTAATGCAAGGTGGAGCAGAGCGGGTTAAAATTATTGCGGGTTAAGTTTCACCCACCCGCCCCGCCCCATGGCCATTTTAATTTCAAGATCTAGGATACCATAATTCTAGTTCTTCATAGATTAAAAATCATTCTAAAATAGTCCCAACAAACCCTATTTGAAATAGTGATCATAATGTTGGGAATAAATCTGTAACAGAAATAATATTTGCAGTAATAAAGGCGATAAATGCAGAACACAACAATGCGGTTAATCAACAAGAATAAAAGAGAAATAATGACACCAAGATTTTATGTGGAAACCCTCCTAAATAAGGGAAAAACCACGACCCGAGAGGAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTCTGAGTAAAACTACAAAGACCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCACATCACTACAATATCGCTCACACTCTCTATTTTTCCTCATAGATTATTTTCCTCTTTGATGCCTCACTCTTCTTTTCTCTCCTTTTTAATTCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTACGTGGAAACCCTCCTAAATAAGAGAAAAACCACGACCCAAGAGAAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTTTGAGTAAAACTCTAAAGATCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCATCTCACTACAATATCGCTCACACTCTCTATTTTTCCTTAAAGATTATTTTCCTCTGTGATGTCTCACTCTTCTTTTCTCTCTTTTGTAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="125715" stop="124877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125415" g_stop="125176" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125415" e_stop="125176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCAAAGAGGAAAATAATCTATGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGATGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGTAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGGTTTCCACA</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="130453" stop="129614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130153" g_stop="129915" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130153" e_stop="129915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTAATATAGTGATATTCGTTCCTCCTCTCGGGTCGTGGGTTTTTCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546757" ref_strand="+" ref_description="SGN-E546757 [TUS-70-E15](-)">
      <seq>agaatgaggatgagagcagtgaggatgatcaagaaaatgttcattacaataaaaaaattgacattaataaaaatgttttcgacagtgatgaggatgatggagcaagttctgattacggatacggaagtacatcaggatcttcagagaatgagaaagaagacataagtcttgaacctggaggagggataccgacaaaatctgtcaaatggagttcggaatcaaaacgtaaaagcaagataaagtcatcctctcgagccatactctcaacctcaagacgtaaaagcaaggtaaaacgctctgaaagtatcatctcaaacgacgatactgaaaagaaggacacattcaatttaaaagacaataacaatcatcgacaacaaaagaacgccaagtccaagactgtaagttttagtggtttttcgagtcagagcagcgatgatgcagaatcagacggtgaaaatgatatcggttcaaatcaatcaagacatgtacaatttagatcatgaaaccatacacttgtgttaccaaggcacctctaaggtttctaaataagagtacacagaggctctttcataactatggatcttatttatattttttggtatccttcatgagtagtactctttggatatctggtattgtcatgattcaatatttgtttcttttagagaaagaaatacaacaacaaaaaggggaaattacattgaaataatcttttcgttatctatttaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="132435" stop="9258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132135" g_stop="131411" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131410" i_stop="131089" i_length="322">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131088" g_stop="131056" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="759" r_length="32" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E546757" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132135" e_stop="131411"/>
          <exon e_start="131088" e_stop="131056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGGATGAGAGCAGTGAGGATGATCAAGACAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATCAGTCTTGAACCTGGAGGAGGGATACCAACAAAATTTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACGCTCAACTTCAAGACGTAAAAGCAAGGTAAAACGGTCTGAAAGTATTATCTCAAACGACGATACTG--AA-AAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAATGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGTGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATCAAGACATGTACAATTTAGATCATGAAACCATACACTTGTGTTACCATGGCACCTCTAAGGTTTCTAAATAAGAGTACACAGAGTCTCTTTCATAACTATGGATCTTATATATATTTTTTGGTATCCTTCATGAGTAGTACTCTTTGGATATCTGGTATTGTCATGATTCAATATTTGTTTCTTTTAAAGAAATAAATACAACAACAAAAAGGGGAAATTACATTGAAATCAATCTTTTCGTTATCTATTTACTTTGGTTGGTCAGAGTTCGATTCTTCACGCTTACGGTACCCTCCACAATTATTTCTTAAGAGTAGATACGAATTCTTTTTGGAACTTCACTGTGTCCCAAATGAAAGAGGGAAATTAAATTTTCAAAATTGCCATGTAAAATGTCATGTAGGATGAATGTGTCTATTTGTTTTAATTTTATACAAGTTTAAGTGTCGACTTGTGCACACACAAAGTTAAAGGTCATAGTTGCCAATTGAAGCCAATTTAAGGGTCGTATTTATGTAATATATCTTTAATTTTTTGGATTAAACATCATACCAAATGCTTTAATTTTTTAGATTAAGCAGATCGATTTCATTGATGATGTACCG</genome_strand>
        <mrna_strand>AGAATGAGGATGAGAGCAGTGAGGATGATCAAGAAAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATAAGTCTTGAACCTGGAGGAGGGATACCGACAAAATCTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACTCTCAACCTCAAGACGTAAAAGCAAGGTAAAACGCTCTGAAAGTATCATCTCAAACGACGATACTGAAAAGAAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAACGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGCGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATCAAGACATGTACAATTTAGATCATGAAACCATACACTTGTGTTACCAAGGCACCTCTAAGGTTTCTAAATAAGAGTACACAGAGGCTCTTTCATAACTATGGATCTTATTTATATTTTTTGGTATCCTTCATGAGTAGTACTCTTTGGATATCTGGTATTGTCATGATTCAATATTTGTTTCTTTTAGAGAAAGAAATACAACAACAAAAAGGGGAAATTACATTGAAAT-AATCTTTTCGTTATCTATTT..................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAC-TCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363134" ref_strand="+" ref_description="SGN-E363134 [cLPP-19-M12]">
      <seq>ttaccgaataagaatgaggatgagagcagtgaggatgatcaagaaaatgttcattacaataaaaaaattgacattaataaaaatgttttcgacagtgatgaggatgatggagcaagttctgattacggatacggaagtacatcaggatcttcagagaatgagaaagaagacataagtcttgaacctggaggagggataccgacaaaatctgtcaaatggagttcggaatcaaaacgtaaaagcaagataaagtcatcctctcgagccatactctcaacctcaagacgtaaaagcaaggtaaaacgctctgaaagtatcatctcaaacgacgatactgaaaagaaggacacattcaatttaaaagacaataacaatcatcgacaacaaaagaacgccaagtccaagactgtaagttttagtggtttttcgagtcagagcagcgatgatgcataatcagacggtgaaaatgatatcggttcaaatcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="132445" stop="131361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132145" g_stop="131661" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E363134" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132145" e_stop="131661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCGAATAAGAATGAGGATGAGAGCAGTGAGGATGATCAAGACAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATCAGTCTTGAACCTGGAGGAGGGATACCAACAAAATTTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACGCTCAACTTCAAGACGTAAAAGCAAGGTAAAACGGTCTGAAAGTATTATCTCAAACGACGATACTG--AA-AAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAATGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGTGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATC</genome_strand>
        <mrna_strand>TTACCGAATAAGAATGAGGATGAGAGCAGTGAGGATGATCAAGAAAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATAAGTCTTGAACCTGGAGGAGGGATACCGACAAAATCTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACTCTCAACCTCAAGACGTAAAAGCAAGGTAAAACGCTCTGAAAGTATCATCTCAAACGACGATACTGAAAAGAAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAACGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGCGATGATGCATAATCAGACGGTGAAAATGATATCGGTTCAAATCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E546758" ref_strand="+" ref_description="SGN-E546758 [TUS-70-E15]">
      <seq>gtttttcaatgtgaacatttcatgcatgacactactatttattcaaaggatataaacatcttttttttcccctagctccattcttcaaacataaggtgaaaatatatatcatatattttcttttctaaatatgaatatgaatgggctaatgcatcaatgatatgagttgcctcccctgtttccagtctaagaaaacaaacgagccaccggtacaggacaagcttgtcccggttgctcgccctgctaatgatcatccttcctcctcaccacattttgaaaaaaactacaaagcatcatgtgagaatggtaataataacaacatttgcgctgatcaaggtagctctcctgttgaaaatggagatagcagcaacgcgaaaactttcacattccgtgaactagcaagcgcaacaaagaacttccgacaagaatgcctaataggggaaggtggattcggaagagtctttaagggaacacttcaaggaggagaggttgtggcagtaaagcaactagacaggacaggaacacaaggaaacaaggactttcaagttgaagtcttattgctaagcctacttaaccaccaaaatcttgttaatctcattggatactgtgctgatggagatcaaagaattttagtctatgaatacagaccaatgggcagtcttgctgatcatctaattgatattaaggaggatcaaaagccattagattggcaaaacagaatgaagatagcctcaggtgcagcagaaggacttgagtatctacacgaaaaggccaacccgccaatcatttatcgtgatctcagaactaccatatactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="134186" stop="132453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133886" g_stop="133612" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133611" i_stop="133506" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133505" g_stop="133294" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="488" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133293" i_stop="133167" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133166" g_stop="132977" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="678" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132976" i_stop="132895" i_length="82">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132894" g_stop="132753" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="819" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E546758" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133886" e_stop="133612"/>
          <exon e_start="133505" e_stop="133294"/>
          <exon e_start="133166" e_stop="132977"/>
          <exon e_start="132894" e_stop="132753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACAT-TTTTTTTCCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATCAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCCTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTGGTATCTTCCTCTTTTCTTTTTTTTTTTAAAAACATAACTTACAAATTACTTTGTGTACTTTTCCTAACACATGATAATGTTTGCTTTTTTCTTGTATGTTTCACAGAAAACAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACAATCGCACTGATCACGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAGCTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAGGTAACTAATTTTACTCTAATACTAGTAATCTATCTATATATATTATCTTTGTTTTTCGTCACCATATGATATAACTCACTTGGACACCCTTAATAAAATTTCTGGCTCTGCCACTGCTGATAAATAGGTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATGTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATTGGTAAATGCAGCTCATGATATATATATATAGTTGTTACACCTATGCTTTCTCAAATATTACTTAAATTGATTGTATTATTCAGATATTAAGGAGGATCAAAAGCCATTAGATTGGCAAAACAGAATGAAGATAGCCTCTGGTGCAGCAGAAGGACTTGAGTATCTACACGAAAAGGCCAACCCGCCAATCATTTATCGTGATCTCAGAACTACCAATATACTATT</genome_strand>
        <mrna_strand>GTTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACATCTTTTTTTTCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATGAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCTTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTG..........................................................................................................AAAAAAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACATTTGCGCTGATCAAGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAACTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAG...............................................................................................................................GTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATTTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATTG..................................................................................ATATTAAGGAGGATCAAAAGCCATTAGATTGGCAAAACAGAATGAAGATAGCCTCAGGTGCAGCAGAAGGACTTGAGTATCTACACGAAAAGGCCAACCCGCCAATCATTTATCGTGATCTCAGAACTACC-ATATACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362714" ref_strand="+" ref_description="SGN-E362714 [cLPP-1-H9]">
      <seq>tttttcaatgtgaacatttcatgcatgacactactatttattcaaaggatataaacatcttttttttcccctagctccattcttcaaacataaggtgaaaatatatatcatatattttcttttctaaatatgaatatgaatgggctaatgcatcaatgatatgagttgcctcccctgtttccagtctaagaaaacaaacgagccaccggtacaggacaagcttgtcccggttgctcgccctgctaatgatcatccttcctcctcaccacattttgaaaaaaactacaaagcatcatgtgagaatggtaataataacaacatttgcgctgatcaaggtagctctcctgttgaaaatggagatagcagcaacgcgaaaactttcacattccgtgaactagcaagcgcaacaaagaacttccgacaagaatgcctaataggggaaggtggattcggaagagtctttaagggaacacttcaaggaggagaggttgtggcagtaaagcaactagacaggacaggaacacaaggaaacaaggactttcaagttgaagtcttattgctaagcctacttaaccaccaaaatcttgttaatctcattggatactgtgctgatggagatcaaagaattttagtctatgaatacagaccaatgggcagtcttgctgatcatctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="134185" stop="132678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133885" g_stop="133612" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133611" i_stop="133506" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133505" g_stop="133294" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="487" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133293" i_stop="133167" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133166" g_stop="132978" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="676" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-E362714" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133885" e_stop="133612"/>
          <exon e_start="133505" e_stop="133294"/>
          <exon e_start="133166" e_stop="132978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACAT-TTTTTTTCCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATCAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCCTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTGGTATCTTCCTCTTTTCTTTTTTTTTTTAAAAACATAACTTACAAATTACTTTGTGTACTTTTCCTAACACATGATAATGTTTGCTTTTTTCTTGTATGTTTCACAGAAAACAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACAATCGCACTGATCACGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAGCTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAGGTAACTAATTTTACTCTAATACTAGTAATCTATCTATATATATTATCTTTGTTTTTCGTCACCATATGATATAACTCACTTGGACACCCTTAATAAAATTTCTGGCTCTGCCACTGCTGATAAATAGGTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATGTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATT</genome_strand>
        <mrna_strand>TTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACATCTTTTTTTTCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATGAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCTTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTG..........................................................................................................AAAAAAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACATTTGCGCTGATCAAGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAACTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAG...............................................................................................................................GTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATTTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="10888" PGL_stop="10438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10888" e_stop="10438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="10888" e_stop="10438" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539893" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTGAAAAAAATCG</gDNA_template>
            <first_frame> M  E  R  K  S  F  L  K  K  R  S  N  T  L  I  L  R  R  N  Q  S  L  G  K  *  S  K  E  M  C  *  S  C  T  T  S  S  L  L  P  R  P  V  N  T  S  G  L  Q  *  H  L  N  T  R  R  K  L  K  I  F  Q  S  L  F  R  S  W  I  I  S  S  M  *  *  K  I  W  R  V  I  Y  S  A  N  R  M  F  C  V  C  L  C  L  C  D  E  C  L  V  I  L  T  R  S  S  *  R  I  K  *  I  N  N  A  I  Y  S  L  F  C  E  C  N  S  R  Y  G  Q  N  I  Y  I  Y  I  Y  I  C  *  D  I  R  V  *  I  F  L  K  K  I  </first_frame>
            <second_frame>  W  K  G  K  V  S  *  R  R  D  Q  T  H  *  S  S  E  E  I  N  H  L  G  S  N  R  R  R  C  A  R  V  V  Q  L  L  H  Y  Y  H  V  Q  *  T  P  V  D  Y  S  N  I  *  I  R  E  E  N  *  K  Y  S  R  A  S  F  V  L  G  L  F  R  Q  C  D  E  R  Y  G  G  S  S  T  Q  Q  I  E  C  S  V  Y  V  C  A  Y  V  M  N  V  W  *  Y  *  R  G  P  A  N  V  *  N  K  L  I  M  L  Y  I  V  S  S  V  N  V  I  P  D  M  V  K  T  Y  I  Y  I  Y  I  Y  V  K  I  L  E  Y  E  Y  F  *  K  K  S </second_frame>
            <third_frame>   G  K  E  K  F  L  K  E  E  I  K  H  I  D  P  Q  K  K  S  I  T  W  E  V  I  E  G  D  V  L  E  L  Y  N  F  F  I  I  T  T  S  S  E  H  Q  W  T  T  V  T  F  E  Y  E  K  K  T  E  N  I  P  E  P  L  S  F  L  D  Y  F  V  N  V  M  K  D  M  E  G  H  L  L  S  K  *  N  V  L  C  M  F  V  L  M  *  *  M  F  G  N  I  D  E  V  Q  L  T  Y  K  I  N  *  *  C  Y  I  *  S  L  L  *  M  *  F  Q  I  W  S  K  H  I  Y  I  Y  I  Y  M  L  R  Y  *  S  M  N  I  F  E  K  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10886" stop="10632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEKFLKEEIKHIDPQKKSITWEVIEGDVLELYNFFIITTSSEHQWTTVTFEYEKKTENIPEPLSFLDYFVNVMKDMEGHLLSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="26186" PGL_stop="26463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26186" e_stop="26463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="26186" e_stop="26463" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26186" stop="26463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTGGTGTTTGCCACAAAAATGCCAAGAAGGAGTGTTAGACAATTGGCATTTTTTCAGCTTATTATTATTTGTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTTTAGCTAGACTTAGTAAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> F  Y  *  R  S  P  T  I  *  *  S  V  A  C  S  L  F  I  *  E  P  A  S  *  H  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  A  K  N  W  C  L  P  Q  K  C  Q  E  G  V  L  D  N  W  H  F  F  S  L  L  L  F  V  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  L  D  L  V  N  F  S  C  S  T  F  *   </first_frame>
            <second_frame>  F  I  R  E  V  Q  Q  S  N  E  V  L  L  V  H  C  S  S  E  N  Q  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  P  R  Q  R  I  G  V  C  H  K  N  A  K  K  E  C  *  T  I  G  I  F  S  A  Y  Y  Y  L  Y  Y  F  L  L  I  S  I  *  C  F  L  F  F  S  *  T  *  *  T  L  V  A  Q  L  S  E  </second_frame>
            <third_frame>   L  L  E  K  S  N  N  L  M  K  C  C  L  F  I  V  H  L  R  T  S  *  L  T  F  S  P  S  H  C  Q  R  K  G  L  K  I  R  G  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  A  F  F  Q  L  I  I  I  C  T  I  F  Y  L  F  Q  F  S  A  S  Y  F  L  A  R  L  S  K  L  *  L  L  N  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="28565" PGL_stop="28955"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28565" e_stop="28955"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="28565" e_stop="28955" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28565" stop="28955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338242" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTATTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCACGTATGTATTTTCTAAAATATTTTTATGATTTAAAATACAGTAGTATTCAATCACTAACAATTATCAGGAACTAAAGGCATATACAACTATTGGTTGAGTATGACATGTTATATAAAACTTCTGAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTCTGAATATTATTTTGATTGTTTTGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCG</gDNA_template>
            <first_frame> L  D  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  I  *  L  M  F  W  L  I  S  L  *  E  S  R  Y  Y  M  H  K  I  T  Y  V  F  S  K  I  F  L  *  F  K  I  Q  *  Y  S  I  T  N  N  Y  Q  E  L  K  A  Y  T  T  I  G  *  V  *  H  V  I  *  N  F  *  N  G  R  R  Y  K  I  L  I  A  *  V  *  I  L  F  *  L  F  *  K  T  Q  R  V  S  H  V  V  L  R  S  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  </first_frame>
            <second_frame>  L  I  L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  L  F  N  S  C  F  G  *  S  R  Y  E  N  Q  G  I  I  C  I  K  S  R  M  Y  F  L  K  Y  F  Y  D  L  K  Y  S  S  I  Q  S  L  T  I  I  R  N  *  R  H  I  Q  L  L  V  E  Y  D  M  L  Y  K  T  S  E  M  E  E  G  I  K  F  *  *  H  E  S  E  Y  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S </second_frame>
            <third_frame>   *  F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  S  F  Y  L  T  H  V  L  V  D  L  V  M  R  I  K  V  L  Y  A  *  N  H  V  C  I  F  *  N  I  F  M  I  *  N  T  V  V  F  N  H  *  Q  L  S  G  T  K  G  I  Y  N  Y  W  L  S  M  T  C  Y  I  K  L  L  K  W  K  K  V  *  N  F  N  S  M  S  L  N  I  I  L  I  V  L  K  D  S  K  G  K  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="29477" PGL_stop="29830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29477" e_stop="29830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="29477" e_stop="29830" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29477" stop="29830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204533" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTTCATTATCAAATGGTATGAAAGGACATTGGACTTGTTAATGTTGTCGACCAAATAATTTGACAAGTTTATAAATCCTCCATCAAAATACAAGAAGATAAAGTGATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTATCATGAAAATATGATGAATTTTAAAATCATGACAATGTACTTATAATGCAAATTTATGAAGTACATATAAATGATTAGTCCATTCCTTGAAGAGAATGTGACTTGTGATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCAAGATGTGATAAAATCATTTATGGGTTGAATATATGTCACAACTCACCTCTATGGGAG</gDNA_template>
            <first_frame> S  F  H  Y  Q  M  V  *  K  D  I  G  L  V  N  V  V  D  Q  I  I  *  Q  V  Y  K  S  S  I  K  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  Y  H  E  N  M  M  N  F  K  I  M  T  M  Y  L  *  C  K  F  M  K  Y  I  *  M  I  S  P  F  L  E  E  N  V  T  C  D  E  Y  R  E  C  S  T  I  L  *  E  N  G  S  R  C  D  K  I  I  Y  G  L  N  I  C  H  N  S  P  L  W  E </first_frame>
            <second_frame>  V  F  I  I  K  W  Y  E  R  T  L  D  L  L  M  L  S  T  K  *  F  D  K  F  I  N  P  P  S  K  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  I  M  K  I  *  *  I  L  K  S  *  Q  C  T  Y  N  A  N  L  *  S  T  Y  K  *  L  V  H  S  L  K  R  M  *  L  V  M  S  I  V  N  A  R  P  F  Y  K  R  M  G  Q  D  V  I  K  S  F  M  G  *  I  Y  V  T  T  H  L  Y  G   </second_frame>
            <third_frame>   F  S  L  S  N  G  M  K  G  H  W  T  C  *  C  C  R  P  N  N  L  T  S  L  *  I  L  H  Q  N  T  R  R  *  S  D  G  T  L  D  L  S  K  *  C  *  G  V  S  *  K  Y  D  E  F  *  N  H  D  N  V  L  I  M  Q  I  Y  E  V  H  I  N  D  *  S  I  P  *  R  E  C  D  L  *  *  V  S  *  M  L  D  H  S  I  R  E  W  V  K  M  *  *  N  H  L  W  V  E  Y  M  S  Q  L  T  S  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="50640" PGL_stop="51365"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50640" e_stop="51365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="50640" e_stop="51365" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50640" stop="51124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51065" stop="51365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCAAGCCCGATCCGTTTTGGGTCCTTCCCGTCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCTGTGCCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAGATGACGAGTTTAAGGCTTTGGCTAATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGCAAATGGGTGTAAAAATTAAACACAATGCAGATGACAGTATTTCTAGGTACAAGGCTCGTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATAAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGTCGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGTAAGCCCCCCGTGCTTGATACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  Q  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  P  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  *  M  T  S  L  R  L  W  L  I  R  K  F  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  A  N  G  C  K  N  *  T  Q  C  R  *  Q  Y  F  *  V  Q  G  S  F  S  C  *  R  L  *  S  G  V  *  P  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  *  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  V  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  V  S  P  P  C  L  I  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  K  P  D  P  F  W  V  L  P  V  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  L  C  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  R  *  R  V  *  G  F  G  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  Q  M  G  V  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  D  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  K  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  S  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  *  A  P  R  A  *  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  S  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  C  A  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  I  D  D  E  F  K  A  L  A  N  Q  K  I  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  *  K  L  N  T  M  Q  M  T  V  F  L  G  T  R  L  V  *  L  L  K  A  I  I  R  S  M  T  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  C  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  D  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50642" stop="51019"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPSTPESPPPVPPPNTHPMLTCAKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAIDDEFKALANQKIWVLVPKPHGRHPVGCKWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50980" stop="51330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APWAAPSGLQMGVKIKHNADDSISRYKARLVAKGYNQEYDLDYSETFSPVIRQETIRLVLSLAVRNNWLINKLDVSNAFLHGMLDETIYMSQPPGYVDPRFPQHVCKLQKSLYGLK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51071" stop="51358"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLKAIIRSMTLITPRHSVLLFGRKPFAWYCHSPCATIGSSISWMFPMLFFMACLMKLSTCRNHRAMLIPASLNMFANSRSLCMGSSKPPVLDTHV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="64248" PGL_stop="67669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64248" e_stop="64389"/>
            <exon e_start="65244" e_stop="65538"/>
            <exon e_start="67517" e_stop="67669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64248" e_stop="64389" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="64390" i_stop="65243" i_length="854"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65244" e_stop="65538" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65539" i_stop="67516" i_length="1978"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67517" e_stop="67669" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64248" stop="64389"/>
              <exon start="65244" stop="65538"/>
              <exon start="67517" stop="67669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64389"/>
              <exon start="65244" stop="65445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287799" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTCTCCTTCCCTTTAATCGCACAGTACTCTAGAGACCAGACAAGTGAGTACAACTACACTCTCTCTCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCG : CATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACTGAGTGTATGAAATCAAAAGCTGTGGCCCCTTTGCTGGAGGAAGAGGAGAAGTATGACAACCCTAGCTTCAAGGATGGAAAGAAAGACTTTGAG : GATAATTCTGAAGAAAATCAGTCCTCAAAGGGTTCCAAAGGGCCTCTCTCTGAAGGAGAACCAAGGAATTCACAGAAGAGATTATGTTCTTGCATTATTTCAGGCAGTATATGTGATAGTAAATGCACCCAGAAGTTTTCTCTTTCCCTGTTG</gDNA_template>
            <first_frame> S  L  S  P  S  L  *  S  H  S  T  L  E  T  R  Q  V  S  T  T  T  L  S  L  K  L  S  F  L  V  G  K  F  S  R  F  P  Y  R  R  R  L  S  P  F  P  A   : A  Y  I  W  C  G  F  R  F  N  S  T  T  L  Q  F  M  L  I  *  V  C  C  G  S  F  S  T  S  L  Y  D  H  S  K  A  *  *  F  G  K  K  C  S  *  L  T  S  E  R  G  Y  Q  V  L  I  F  F  W  K  M  G  L  I  I  H  L  L  S  V  *  N  Q  K  L  W  P  L  C  W  R  K  R  R  S  M  T  T  L  A  S  R  M  E  R  K  T  L  R :   I  I  L  K  K  I  S  P  Q  R  V  P  K  G  L  S  L  K  E  N  Q  G  I  H  R  R  D  Y  V  L  A  L  F  Q  A  V  Y  V  I  V  N  A  P  R  S  F  L  F  P  C   </first_frame>
            <second_frame>  L  S  L  L  P  F  N  R  T  V  L  *  R  P  D  K  *  V  Q  L  H  S  L  S  N  *  A  F  L  S  E  N  F  H  A  S  L  I  A  G  V  F  L  R  F  R  P  :  H  I  F  G  V  A  L  D  S  I  R  R  L  C  N  S  C  *  F  K  F  A  V  E  V  S  V  P  L  C  M  T  I  R  K  L  N  D  S  E  K  S  V  L  D  L  Q  A  K  E  A  T  R  F  *  S  F  F  G  K  W  D  S  *  Y  T  Y  *  V  Y  E  I  K  S  C  G  P  F  A  G  G  R  G  E  V  *  Q  P  *  L  Q  G  W  K  E  R  L  *   : G  *  F  *  R  K  S  V  L  K  G  F  Q  R  A  S  L  *  R  R  T  K  E  F  T  E  E  I  M  F  L  H  Y  F  R  Q  Y  M  *  *  *  M  H  P  E  V  F  S  F  P  V  </second_frame>
            <third_frame>   S  L  S  F  P  L  I  A  Q  Y  S  R  D  Q  T  S  E  Y  N  Y  T  L  S  Q  T  E  L  S  C  R  K  I  F  T  L  P  L  S  P  A  S  F  S  V  S  G  R :   I  Y  L  V  W  L  *  I  Q  F  D  D  F  A  I  H  V  D  L  S  L  L  W  K  F  Q  Y  L  F  V  *  P  F  E  S  L  M  I  R  K  K  V  F  L  T  Y  K  R  K  R  L  P  G  S  D  L  F  L  E  N  G  T  H  N  T  P  T  E  C  M  K  S  K  A  V  A  P  L  L  E  E  E  E  K  Y  D  N  P  S  F  K  D  G  K  K  D  F  E  :  D  N  S  E  E  N  Q  S  S  K  G  S  K  G  P  L  S  E  G  E  P  R  N  S  Q  K  R  L  C  S  C  I  I  S  G  S  I  C  D  S  K  C  T  Q  K  F  S  L  S  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65338" stop="65538"/>
                    <exon start="67517" stop="67669"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFESLMIRKKVFLTYKRKRLPGSDLFLENGTHNTPTECMKSKAVAPLLEEEEKYDNPSFKDGKKDFEDNSEENQSSKGSKGPLSEGEPRNSQKRLCSCIISGSICDSKCTQKFSLSLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="67736" PGL_stop="69833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67736" e_stop="68056"/>
            <exon e_start="69216" e_stop="69277"/>
            <exon e_start="69406" e_stop="69662"/>
            <exon e_start="69782" e_stop="69833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.677" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67736" e_stop="68056" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.677" acc_prob="0.984">
            <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69216" e_stop="69277" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69406" e_stop="69662" e_length="257"/>
          </exon>
          <intron i_serial="3" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69663" i_stop="69781" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69782" e_stop="69833" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67736" stop="68056"/>
              <exon start="69216" stop="69277"/>
              <exon start="69406" stop="69662"/>
              <exon start="69782" stop="69794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67737" stop="68056"/>
              <exon start="69216" stop="69277"/>
              <exon start="69406" stop="69452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67865" stop="68056"/>
              <exon start="69216" stop="69277"/>
              <exon start="69406" stop="69662"/>
              <exon start="69782" stop="69833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67908" stop="68056"/>
              <exon start="69216" stop="69277"/>
              <exon start="69406" stop="69572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG : ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT : ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTG : ATAGTGATGACACAATGGACTGCAATAGGTCGGAACAAGCATCTGATGAACG</gDNA_template>
            <first_frame> C  D  L  K  D  S  D  S  S  D  L  V  K  L  S  L  E  E  V  A  T  P  K  D  I  S  L  I  P  S  V  N  A  V  S  T  S  K  L  S  S  S  L  I  T  F  Q  R  R  A  K  R  D  K  D  A  G  R  A  Y  A  K  G  N  L  E  A  E  D  V  A  C  L  S  V  E  N  T  A  C  L  V  A  P  H  D  S  D  K  S  V  A  K  S  C  S  V  D  L  S  A  D  F  K  H  P  E  :  T  T  N  G  G  E  N  Y  Q  C  A  C  A  G  S  P  A  Q  M  K  I :   L  L  D  V  N  E  Q  P  I  L  V  K  E  A  Q  P  I  D  E  V  A  D  P  N  S  G  V  G  F  S  G  L  D  D  G  V  A  S  D  T  F  K  K  S  S  F  H  S  P  K  D  P  S  F  D  G  L  S  R  T  E  V  P  I  S  S  P  L  E  V  A  S  N  T  G  S  Q  A  L  D  I  S  I  P  C   : D  S  D  D  T  M  D  C  N  R  S  E  Q  A  S  D  E   </first_frame>
            <second_frame>  A  I  L  R  I  L  I  P  L  I  W  L  N  *  V  W  K  K  L  P  H  Q  K  T  S  L  *  S  P  L  *  M  Q  L  V  Q  V  N  C  L  P  V  *  L  L  F  S  E  E  L  S  G  T  R  M  Q  A  G  H  M  P  R  A  I  L  K  L  K  M  L  L  A  Y  Q  L  K  I  L  H  V  L  S  L  L  M  T  L  I  N  Q  L  L  R  V  A  Q  W  I  F  Q  Q  I  L  S  I  Q  R :   Q  P  T  E  V  R  I  I  N  V  L  V  L  D  H  L  H  R  *  R   : Y  C  *  M  L  M  N  S  L  S  *  *  R  K  L  S  Q  S  M  K  *  L  I  Q  I  L  E  *  A  S  L  V  W  T  T  V  L  L  Q  I  L  S  R  S  H  H  F  I  A  L  R  T  L  L  L  M  V  C  P  E  L  K  C  Q  Y  R  L  P  *  R  L  Q  V  T  L  V  P  K  L  *  I  Y  L  Y  L  V  :  I  V  M  T  Q  W  T  A  I  G  R  N  K  H  L  M  N  </second_frame>
            <third_frame>   R  S  *  G  F  *  F  L  *  F  G  *  T  E  S  G  R  S  C  H  T  K  R  H  L  S  D  P  L  C  K  C  S  *  Y  K  *  I  V  F  Q  S  D  Y  F  S  A  K  S  *  A  G  Q  G  C  R  P  G  I  C  Q  G  Q  S  *  S  *  R  C  C  L  L  I  S  *  K  Y  C  M  S  C  R  S  S  *  L  *  *  I  S  C  *  E  L  L  S  G  S  F  S  R  F  *  A  S  R   : D  N  Q  R  R  *  E  L  S  M  C  L  C  W  I  T  C  T  D  E  D  :  I  V  R  C  *  *  T  A  Y  L  S  E  G  S  S  A  N  R  *  S  S  *  S  K  F  W  S  R  L  L  W  F  G  R  R  C  C  F  R  Y  F  Q  E  V  I  I  S  *  P  *  G  P  F  F  *  W  F  V  Q  N  *  S  A  N  I  V  S  L  R  G  C  K  *  H  W  F  P  S  F  R  Y  I  Y  T  L  * :   *  *  *  H  N  G  L  Q  *  V  G  T  S  I  *  *  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67736" stop="68056"/>
                    <exon start="69216" stop="69277"/>
                    <exon start="69406" stop="69662"/>
                    <exon start="69782" stop="69831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CDLKDSDSSDLVKLSLEEVATPKDISLIPSVNAVSTSKLSSSLITFQRRAKRDKDAGRAYAKGNLEAEDVACLSVENTACLVAPHDSDKSVAKSCSVDLSADFKHPETTNGGENYQCACAGSPAQMKILLDVNEQPILVKEAQPIDEVADPNSGVGFSGLDDGVASDTFKKSSFHSPKDPSFDGLSRTEVPISSPLEVASNTGSQALDISIPCDSDDTMDCNRSEQASDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="71012" PGL_stop="71605"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71012" e_stop="71605"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="71012" e_stop="71605" e_length="594"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71012" stop="71605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542933" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTCTCGAATTATGAGCAGAGTGTCTGAAGTAGGTAATTTGCCTCACTGGCTCAAGGAAGTGGTTGCAATCCCACCCAGGCCTCCTGGATTTGCCCCAGATTCTTCATGGTTTATCCATCCATGGATTGGTCCACCGTTTTCTGAACCTAAGCGAGCTCACTGTGAATCAAGGAACAGATTGAGCGACTTGTACACTACACCAAAAACTGAGCTGAATAATGGTAATGCTGATTGTGCTCATCTCCCTATAAGAGAAGGGAAGCAACATTGTAAGTCAGAAGCAGATAAAAAAGTTGAGCTGATTGTCATCAATAGCGACGCCTCATCAGAGGAGACAATATCAGATGATTGTAATGTAAGGCATTAGCTTAAGTTGGGATTTCATAGTTCAACAATGGTTAAACTTGTATAAAAGTAGTTTAAGTATCTCAGCTATTTCTCGAGGGTGAGATTAGTTGAATCAGGTAGTTTTTATTTTCCCAAATTCTTATTTTAGCTATTTGCTGGTAAGCTATGTTGTAAACTCACTTTAGGTCCTAATTAGGGATTGGATCAAAGCCAAGCAAATCCAAACTCCTTCATAAACTCAAG</gDNA_template>
            <first_frame> Q  F  S  N  Y  E  Q  S  V  *  S  R  *  F  A  S  L  A  Q  G  S  G  C  N  P  T  Q  A  S  W  I  C  P  R  F  F  M  V  Y  P  S  M  D  W  S  T  V  F  *  T  *  A  S  S  L  *  I  K  E  Q  I  E  R  L  V  H  Y  T  K  N  *  A  E  *  W  *  C  *  L  C  S  S  P  Y  K  R  R  E  A  T  L  *  V  R  S  R  *  K  S  *  A  D  C  H  Q  *  R  R  L  I  R  G  D  N  I  R  *  L  *  C  K  A  L  A  *  V  G  I  S  *  F  N  N  G  *  T  C  I  K  V  V  *  V  S  Q  L  F  L  E  G  E  I  S  *  I  R  *  F  L  F  S  Q  I  L  I  L  A  I  C  W  *  A  M  L  *  T  H  F  R  S  *  L  G  I  G  S  K  P  S  K  S  K  L  L  H  K  L  K </first_frame>
            <second_frame>  S  S  R  I  M  S  R  V  S  E  V  G  N  L  P  H  W  L  K  E  V  V  A  I  P  P  R  P  P  G  F  A  P  D  S  S  W  F  I  H  P  W  I  G  P  P  F  S  E  P  K  R  A  H  C  E  S  R  N  R  L  S  D  L  Y  T  T  P  K  T  E  L  N  N  G  N  A  D  C  A  H  L  P  I  R  E  G  K  Q  H  C  K  S  E  A  D  K  K  V  E  L  I  V  I  N  S  D  A  S  S  E  E  T  I  S  D  D  C  N  V  R  H  *  L  K  L  G  F  H  S  S  T  M  V  K  L  V  *  K  *  F  K  Y  L  S  Y  F  S  R  V  R  L  V  E  S  G  S  F  Y  F  P  K  F  L  F  *  L  F  A  G  K  L  C  C  K  L  T  L  G  P  N  *  G  L  D  Q  S  Q  A  N  P  N  S  F  I  N  S   </second_frame>
            <third_frame>   V  L  E  L  *  A  E  C  L  K  *  V  I  C  L  T  G  S  R  K  W  L  Q  S  H  P  G  L  L  D  L  P  Q  I  L  H  G  L  S  I  H  G  L  V  H  R  F  L  N  L  S  E  L  T  V  N  Q  G  T  D  *  A  T  C  T  L  H  Q  K  L  S  *  I  M  V  M  L  I  V  L  I  S  L  *  E  K  G  S  N  I  V  S  Q  K  Q  I  K  K  L  S  *  L  S  S  I  A  T  P  H  Q  R  R  Q  Y  Q  M  I  V  M  *  G  I  S  L  S  W  D  F  I  V  Q  Q  W  L  N  L  Y  K  S  S  L  S  I  S  A  I  S  R  G  *  D  *  L  N  Q  V  V  F  I  F  P  N  S  Y  F  S  Y  L  L  V  S  Y  V  V  N  S  L  *  V  L  I  R  D  W  I  K  A  K  Q  I  Q  T  P  S  *  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71013" stop="71381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRIMSRVSEVGNLPHWLKEVVAIPPRPPGFAPDSSWFIHPWIGPPFSEPKRAHCESRNRLSDLYTTPKTELNNGNADCAHLPIREGKQHCKSEADKKVELIVINSDASSEETISDDCNVRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="124202" PGL_stop="125416"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124202" e_stop="124218"/>
            <exon e_start="125170" e_stop="125416"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.588"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.588">
            <gDNA_exon_boundary e_start="124202" e_stop="124218" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="124219" i_stop="125169" i_length="951"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="125170" e_stop="125416" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124202" stop="124218"/>
              <exon start="125170" stop="125415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372870" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124202" stop="124218"/>
              <exon start="125170" stop="125415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378778" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124203" stop="124218"/>
              <exon start="125170" stop="125416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372869" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTTTATGTATTAT : ATTTTATGTGGAAACCCTCCTAAATAAGGGAAAAACCACGACCCGAGAGGAGCAACGAATATCACTATAGTAAGGATTTTACACTTGTATGTCTGAGTAAAACTACAAAGACCACTACACATTCAAAAGAAATAACACTCTTTTGATTTTTCCACATCACTACAATATCGCTCACACTCTCTATTTTTCCTCATAGATTATTTTCCTCTTTGATGCCTCACTCTTCTTTTCTCTCCTTTTTAATTCT</gDNA_template>
            <first_frame> *  C  L  C  I  I :   F  Y  V  E  T  L  L  N  K  G  K  T  T  T  R  E  E  Q  R  I  S  L  *  *  G  F  Y  T  C  M  S  E  *  N  Y  K  D  H  Y  T  F  K  R  N  N  T  L  L  I  F  P  H  H  Y  N  I  A  H  T  L  Y  F  S  S  *  I  I  F  L  F  D  A  S  L  F  F  S  L  L  F  N  S </first_frame>
            <second_frame>  D  V  Y  V  L   : Y  F  M  W  K  P  S  *  I  R  E  K  P  R  P  E  R  S  N  E  Y  H  Y  S  K  D  F  T  L  V  C  L  S  K  T  T  K  T  T  T  H  S  K  E  I  T  L  F  *  F  F  H  I  T  T  I  S  L  T  L  S  I  F  P  H  R  L  F  S  S  L  M  P  H  S  S  F  L  S  F  L  I   </second_frame>
            <third_frame>   M  F  M  Y  Y  :  I  L  C  G  N  P  P  K  *  G  K  N  H  D  P  R  G  A  T  N  I  T  I  V  R  I  L  H  L  Y  V  *  V  K  L  Q  R  P  L  H  I  Q  K  K  *  H  S  F  D  F  S  T  S  L  Q  Y  R  S  H  S  L  F  F  L  I  D  Y  F  P  L  *  C  L  T  L  L  F  S  P  F  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="125415" PGL_stop="125176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125415" e_stop="125176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="125415" e_stop="125176" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125415" stop="125176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCAAAGAGGAAAATAATCTATGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGATGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGTAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGGTTTCCACA</gDNA_template>
            <first_frame> E  L  K  R  R  E  K  K  S  E  A  S  K  R  K  I  I  Y  E  E  K  *  R  V  *  A  I  L  *  *  C  G  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  *  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  V  V  F  P  L  F  R  R  V  S  T </first_frame>
            <second_frame>  N  *  K  G  E  K  R  R  V  R  H  Q  R  G  K  *  S  M  R  K  N  R  E  C  E  R  Y  C  S  D  V  E  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  C  S  F  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  W  F  F  P  Y  L  G  G  F  P   </second_frame>
            <third_frame>   I  K  K  E  R  K  E  E  *  G  I  K  E  E  N  N  L  *  G  K  I  E  S  V  S  D  I  V  V  M  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  V  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  L  S  G  R  G  F  S  L  I  *  E  G  F  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="130153" PGL_stop="129915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130153" e_stop="129915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="130153" e_stop="129915" e_length="239"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130153" stop="129915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTAATATAGTGATATTCGTTCCTCCTCTCGGGTCGTGGGTTTTTCCTTATTTAGGAGGGTTTCCAC</gDNA_template>
            <first_frame> E  L  K  R  R  E  K  K  S  E  A  S  Q  R  K  I  I  C  E  E  K  *  R  V  *  A  I  L  *  *  G  E  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  *  Y  S  D  I  R  S  S  S  R  V  V  G  F  S  L  F  R  R  V  S   </first_frame>
            <second_frame>  N  *  K  G  E  K  R  R  V  R  H  H  R  G  K  *  S  V  R  K  N  R  E  C  E  R  Y  C  S  E  V  K  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  Y  K  C  K  I  L  N  I  V  I  F  V  P  P  L  G  S  W  V  F  P  Y  L  G  G  F  P  </second_frame>
            <third_frame>   I  K  K  E  R  K  E  E  *  G  I  T  E  E  N  N  L  *  G  K  I  E  S  V  S  D  I  V  V  R  *  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  T  S  V  K  S  L  I  *  *  Y  S  F  L  L  S  G  R  G  F  F  L  I  *  E  G  F  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="132145" PGL_stop="131056"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132145" e_stop="131411"/>
            <exon e_start="131088" e_stop="131056"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.951" e_score="0.970"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="132145" e_stop="131411" e_length="735"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.951">
            <gDNA_intron_boundary i_start="131410" i_stop="131089" i_length="322"/>
          </intron>
          <exon e_serial="2" e_score="0.455">
            <gDNA_exon_boundary e_start="131088" e_stop="131056" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132145" stop="131661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132135" stop="131411"/>
              <exon start="131088" stop="131056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546757" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATCGAATAAGAATGAGGATGAGAGCAGTGAGGATGATCAAGACAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATCAGTCTTGAACCTGGAGGAGGGATACCAACAAAATTTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACGCTCAACTTCAAGACGTAAAAGCAAGGTAAAACGGTCTGAAAGTATTATCTCAAACGACGATACTGAAAAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAATGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGTGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATCAAGACATGTACAATTTAGATCATGAAACCATACACTTGTGTTACCATGGCACCTCTAAGGTTTCTAAATAAGAGTACACAGAGTCTCTTTCATAACTATGGATCTTATATATATTTTTTGGTATCCTTCATGAGTAGTACTCTTTGGATATCTGGTATTGTCATGATTCAATATTTGTTTCTTTTAAAGAAATAAATACAACAACAAAAAGGGGAAATTACATTGAAATCAATCTTTTCGTTATCTATTT : ATTAAGCAGATCGATTTCATTGATGATGTACCG</gDNA_template>
            <first_frame> L  S  N  K  N  E  D  E  S  S  E  D  D  Q  D  N  V  H  Y  N  K  K  I  D  I  N  K  N  V  F  D  S  D  E  D  D  G  A  S  S  D  Y  G  Y  G  S  T  S  G  S  S  E  N  E  K  E  D  I  S  L  E  P  G  G  G  I  P  T  K  F  V  K  W  S  S  E  S  K  R  K  S  K  I  K  S  S  S  R  A  I  R  S  T  S  R  R  K  S  K  V  K  R  S  E  S  I  I  S  N  D  D  T  E  K  D  T  F  N  L  K  D  N  N  N  H  R  Q  Q  K  N  A  K  S  K  T  V  S  F  S  G  F  S  S  Q  S  S  D  D  A  E  S  D  G  E  N  D  I  G  S  N  Q  S  R  H  V  Q  F  R  S  *  N  H  T  L  V  L  P  W  H  L  *  G  F  *  I  R  V  H  R  V  S  F  I  T  M  D  L  I  Y  I  F  W  Y  P  S  *  V  V  L  F  G  Y  L  V  L  S  *  F  N  I  C  F  F  *  R  N  K  Y  N  N  K  K  G  K  L  H  *  N  Q  S  F  R  Y  L  F  :  I  K  Q  I  D  F  I  D  D  V  P </first_frame>
            <second_frame>  Y  R  I  R  M  R  M  R  A  V  R  M  I  K  T  M  F  I  T  I  K  K  L  T  L  I  K  M  F  S  T  V  M  R  M  M  E  Q  V  L  I  T  D  T  E  V  H  Q  D  L  Q  R  M  R  K  K  T  S  V  L  N  L  E  E  G  Y  Q  Q  N  L  S  N  G  V  R  N  Q  N  V  K  A  R  *  S  H  P  L  E  P  Y  A  Q  L  Q  D  V  K  A  R  *  N  G  L  K  V  L  S  Q  T  T  I  L  K  R  T  H  S  I  *  K  T  I  T  I  I  D  N  K  R  M  P  S  P  R  L  *  V  L  V  V  F  R  V  R  A  V  M  M  Q  N  Q  T  V  K  M  I  S  V  Q  I  N  Q  D  M  Y  N  L  D  H  E  T  I  H  L  C  Y  H  G  T  S  K  V  S  K  *  E  Y  T  E  S  L  S  *  L  W  I  L  Y  I  F  F  G  I  L  H  E  *  Y  S  L  D  I  W  Y  C  H  D  S  I  F  V  S  F  K  E  I  N  T  T  T  K  R  G  N  Y  I  E  I  N  L  F  V  I  Y  L :   L  S  R  S  I  S  L  M  M  Y   </second_frame>
            <third_frame>   I  E  *  E  *  G  *  E  Q  *  G  *  S  R  Q  C  S  L  Q  *  K  N  *  H  *  *  K  C  F  R  Q  *  *  G  *  W  S  K  F  *  L  R  I  R  K  Y  I  R  I  F  R  E  *  E  R  R  H  Q  S  *  T  W  R  R  D  T  N  K  I  C  Q  M  E  F  G  I  K  T  *  K  Q  D  K  V  I  L  S  S  H  T  L  N  F  K  T  *  K  Q  G  K  T  V  *  K  Y  Y  L  K  R  R  Y  *  K  G  H  I  Q  F  K  R  Q  *  Q  S  S  T  T  K  E  C  Q  V  Q  D  C  K  F  *  W  F  F  E  S  E  Q  *  *  C  R  I  R  R  *  K  *  Y  R  F  K  S  I  K  T  C  T  I  *  I  M  K  P  Y  T  C  V  T  M  A  P  L  R  F  L  N  K  S  T  Q  S  L  F  H  N  Y  G  S  Y  I  Y  F  L  V  S  F  M  S  S  T  L  W  I  S  G  I  V  M  I  Q  Y  L  F  L  L  K  K  *  I  Q  Q  Q  K  G  E  I  T  L  K  S  I  F  S  L  S  I   : Y  *  A  D  R  F  H  *  *  C  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132145" stop="131636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNKNEDESSEDDQDNVHYNKKIDINKNVFDSDEDDGASSDYGYGSTSGSSENEKEDISLEPGGGIPTKFVKWSSESKRKSKIKSSSRAIRSTSRRKSKVKRSESIISNDDTEKDTFNLKDNNNHRQQKNAKSKTVSFSGFSSQSSDDAESDGENDIGSNQSRHVQFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="133886" PGL_stop="132753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133886" e_stop="133612"/>
            <exon e_start="133505" e_stop="133294"/>
            <exon e_start="133166" e_stop="132977"/>
            <exon e_start="132894" e_stop="132753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.982"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.972"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="133886" e_stop="133612" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="133611" i_stop="133506" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="133505" e_stop="133294" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="133293" i_stop="133167" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="133166" e_stop="132977" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="132976" i_stop="132895" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="132894" e_stop="132753" e_length="142"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133886" stop="133612"/>
              <exon start="133505" stop="133294"/>
              <exon start="133166" stop="132977"/>
              <exon start="132894" stop="132753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133885" stop="133612"/>
              <exon start="133505" stop="133294"/>
              <exon start="133166" stop="132978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362714" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACATTTTTTTTCCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATCAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCCTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTG : AAAACAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACAATCGCACTGATCACGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAGCTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAG : GTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATGTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATTG : ATATTAAGGAGGATCAAAAGCCATTAGATTGGCAAAACAGAATGAAGATAGCCTCTGGTGCAGCAGAAGGACTTGAGTATCTACACGAAAAGGCCAACCCGCCAATCATTTATCGTGATCTCAGAACTACCAATATACTATT</gDNA_template>
            <first_frame> V  F  Q  C  E  H  F  M  H  D  T  T  I  Y  S  K  D  I  N  I  F  F  P  P  S  S  I  L  Q  T  *  G  E  N  I  Y  H  I  F  S  F  L  N  I  N  M  N  G  L  M  H  Q  *  Y  E  L  P  P  L  F  P  V  *  E  N  K  R  A  T  G  T  G  Q  A  C  P  G  C  S  P  C  *  *  S  S  F  L  L  T  T  F  * :   K  Q  L  Q  S  I  M  *  E  W  *  *  *  Q  Q  S  H  *  S  R  *  L  S  C  *  K  W  R  *  Q  Q  R  E  N  F  H  I  P  *  A  S  K  R  N  K  E  L  P  T  R  M  P  N  R  G  R  W  I  R  K  S  L  *  G  N  T  S  R  R  R   : G  C  G  S  K  A  T  R  Q  D  R  N  T  R  K  Q  G  L  S  S  *  S  L  I  A  K  P  T  *  P  P  K  S  C  *  S  H  W  I  L  C  *  W  R  S  K  N  V  S  L  *  I  Q  T  N  G  Q  S  C  *  S  S  N  * :   Y  *  G  G  S  K  A  I  R  L  A  K  Q  N  E  D  S  L  W  C  S  R  R  T  *  V  S  T  R  K  G  Q  P  A  N  H  L  S  *  S  Q  N  Y  Q  Y  T  I </first_frame>
            <second_frame>  F  F  N  V  N  I  S  C  M  T  L  L  F  I  Q  R  I  *  T  F  F  F  P  L  A  P  F  F  K  H  K  V  K  I  Y  I  I  Y  F  L  F  *  I  S  I  *  M  G  *  C  I  N  D  M  S  C  L  P  C  F  Q  S  K  K  T  N  E  P  P  V  Q  D  K  P  V  P  V  A  R  P  A  N  D  H  P  S  S  S  P  H  F   : E  N  N  Y  K  A  S  C  E  N  G  N  N  N  N  N  R  T  D  H  G  S  S  P  V  E  N  G  D  S  S  N  A  K  T  F  T  F  R  E  L  A  S  A  T  K  N  F  R  Q  E  C  L  I  G  E  G  G  F  G  R  V  F  K  G  T  L  Q  G  G  E  :  V  V  A  V  K  Q  L  D  R  T  G  T  Q  G  N  K  D  F  Q  V  E  V  L  L  L  S  L  L  N  H  Q  N  L  V  N  L  I  G  Y  C  A  D  G  D  Q  R  M  L  V  Y  E  Y  R  P  M  G  S  L  A  D  H  L  I   : D  I  K  E  D  Q  K  P  L  D  W  Q  N  R  M  K  I  A  S  G  A  A  E  G  L  E  Y  L  H  E  K  A  N  P  P  I  I  Y  R  D  L  R  T  T  N  I  L   </second_frame>
            <third_frame>   F  S  M  *  T  F  H  A  *  H  Y  Y  L  F  K  G  Y  K  H  F  F  S  P  *  L  H  S  S  N  I  R  *  K  Y  I  S  Y  I  F  F  S  K  Y  Q  Y  E  W  A  N  A  S  M  I  *  V  A  S  P  V  S  S  L  R  K  Q  T  S  H  R  Y  R  T  S  L  S  R  L  L  A  L  L  M  I  I  L  P  P  H  H  I  L  :  K  T  T  T  K  H  H  V  R  M  V  I  I  T  T  I  A  L  I  T  V  A  L  L  L  K  M  E  I  A  A  T  R  K  L  S  H  S  V  S  *  Q  A  Q  Q  R  T  S  D  K  N  A  *  *  G  K  V  D  S  E  E  S  L  R  E  H  F  K  E  E  R :   L  W  Q  *  S  N  *  T  G  Q  E  H  K  E  T  R  T  F  K  L  K  S  Y  C  *  A  Y  L  T  T  K  I  L  L  I  S  L  D  T  V  L  M  E  I  K  E  C  *  S  M  N  T  D  Q  W  A  V  L  L  I  I  *  L  :  I  L  R  R  I  K  S  H  *  I  G  K  T  E  *  R  *  P  L  V  Q  Q  K  D  L  S  I  Y  T  K  R  P  T  R  Q  S  F  I  V  I  S  E  L  P  I  Y  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133738" stop="133612"/>
                    <exon start="133505" stop="133294"/>
                    <exon start="133166" stop="132977"/>
                    <exon start="132894" stop="132755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CINDMSCLPCFQSKKTNEPPVQDKPVPVARPANDHPSSSPHFENNYKASCENGNNNNNRTDHGSSPVENGDSSNAKTFTFRELASATKNFRQECLIGEGGFGRVFKGTLQGGEVVAVKQLDRTGTQGNKDFQVEVLLLSLLNHQNLVNLIGYCADGDQRMLVYEYRPMGSLADHLIDIKEDQKPLDWQNRMKIASGAAEGLEYLHEKANPPIIYRDLRTTNIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 131 chains have been computed
$ 
$ memory statistics:
$ 649856 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 27077 bytes was the average size of a spliced alignment
$ 19960 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1535 bytes was the average size of a predicted gene location
$ 3 megabytes was the average size of the backtrace matrix
$ 163 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:15:22
-->
