<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 17:59:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4695" ref_strand="+" ref_description="SGN-M4695 C2_At5g37360 [cosii_markers]">
      <seq>aatatggctctcgcccaactccagttgtcaaaaaataatactagtaattctcttctcttgtgcttcaatggcttcctctatctcacttcatcaacactcgtctatctattgtctcttttctactcctactcttcgttttggcaaacacccacatcatatcatctccatccttccatcatttcgcaagaatttcctcaaatttcatacacgtacaacagtaccgtttgctgttactgaatctgattcccccaaatctcttgaaccaaaccctcaaacacttgtacaggaaatcgctgagagttttgttctacctgcagactttttttcgcagcttcccagtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagttgagtgtggtgaagaggttggagagacattgttaaatataagtcgagcatgggaaatggctgatacatcaacgtccacagctttagtggacaagctgcctttattggttggctcattgacaggctctcaaaaatcagttagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtgcagaagtatctggggttgatgttgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaggcctacactggagctgccattgcattcatctttagttttctttcttgggaattgggccaaggcatacagagcataccggagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgcttttgcaatggtgggacttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtagactcggttggattaactaagcatcttactttaaaatggtggcctcctcgaatttgagtataatagaggttctttgctcgtagtttcaatgttgcatccttgcttctggctaactgactgcaaagcttgttgaaaatattattttggcttcttggttcttttgtaaatttttgtttttaggccatgtcttcttccagtcaatgtatcaatattccttgtgatcttctcgtgatgtgtttcctcaagagggatgcttcttgaggaatttggttgttttgtgttgtctctctgttagcatagaaacacttgtctcatattgataatgtcaagtgtcttatcttaaaaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120265" stop="109474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119965" g_stop="119671" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="355" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="403" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="536" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117810" i_length="93">
            <donor d_prob="0.465" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117809" g_stop="117729" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="617" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117728" i_stop="112241" i_length="5488">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112240" g_stop="112191" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="667" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.186" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="738" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="829" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="830" r_stop="943" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="110194" g_stop="109767" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="1371" r_length="428" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-M4695" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119965" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117809" e_stop="117729"/>
          <exon e_start="112240" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</genome_strand>
        <mrna_strand>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG.............................................................................................TTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTAAAAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4695-2" ref_strand="+" ref_description="SGN-M4695-2 C2_At5g37360-2 [cosii_markers]">
      <seq>cttcctctctctcactacatcaacacactatctgttgtctctctcctactcctactcttcgtttcggaaaatacccacatcatatctccatccttccatcttttcgcaagaatttcctcaaattcgattctcctacaacagtaccgtttgctgttacagaatctgattcccccaaatctcttgaaccagaccctcaaactcttctgcaacaagtcgctgagagttttgttctacctgcagactttttttcacagcttcctcgtgatcttcgcttagatctgaatgatgcagcatttgatctttcaaatgggccagttaaagatgagtgtggcgaggaggttggagagacattgttaaatataagccgagcatgggaaatggctgatacatcaacatccacagctttagtggacaagctgcctttactgactggctcattgacaggctctcaaaaatcagcatttggaaggcgcttgttatcagctggaaaaaggttccagtccatgggacaatatggcgaaggtgaagtacagaagattgctaaagttatgataaagactggaaagttgttgtctgcaagtccagtatcaggagttgagggtgaagaatttaagcagcaaaccaggatgttcaagtttggggatcttcaggttgaattgacctctggaaaagcctacactggagctgccatcgcagtcatctttagttttctttcttgggaattgagtcaaggcatacagagcataccagagagctcattacagtatgcaaatgacaatgctttattgcttgctaagtctctgcgagcatctctgcttgtgatgtcctattcatcaaccgttttagctgtttttgcaaccgtggggcttattttacttgggggacaacttaagtcggaaaataagtgagaagacattcctgttactgatagactaaaatgtggatcaacagactgttactggaattccaatggtatcagtaaactcggttggattaactaagcatcttactttaaatatggtggcctccttgaatttgagtataatagaggttctttgattgttgcatccttgcttctggcttgctgactgcaaagcttgttgtaaataaaagttggcttcttagatcttttgtaaatttttgctttatgtttggggtttttcagtcaatgtatcaatattccatggaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="120164" stop="109604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119894" g_stop="119671" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92">
            <donor d_prob="0.994" d_score="0.86"/>
            <acceptor a_prob="0.967" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119578" g_stop="119519" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="278" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119196" g_stop="119149" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="326" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118035" g_stop="117903" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="459" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97">
            <donor d_prob="0.465" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117805" g_stop="117729" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="536" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439">
            <donor d_prob="0.926" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112289" g_stop="112191" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="635" r_length="99" r_score="0.960"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.186" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="112116" g_stop="112046" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="706" r_length="71" r_score="0.958"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83">
            <donor d_prob="0.989" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="111962" g_stop="111872" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="797" r_length="91" r_score="0.967"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="111796" g_stop="111683" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="911" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488">
            <donor d_prob="0.928" d_score="0.98"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="110194" g_stop="109908" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="912" r_stop="1185" r_length="274" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1188" polyA_stop="1199"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-M4695-2" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>1204</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4695-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119894" e_stop="119671"/>
          <exon e_start="119578" e_stop="119519"/>
          <exon e_start="119196" e_stop="119149"/>
          <exon e_start="118035" e_stop="117903"/>
          <exon e_start="117805" e_stop="117729"/>
          <exon e_start="112289" e_stop="112191"/>
          <exon e_start="112116" e_stop="112046"/>
          <exon e_start="111962" e_stop="111872"/>
          <exon e_start="111796" e_stop="111683"/>
          <exon e_start="110194" e_stop="109908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCTGTAAAAAAATCCATTTTATTTACTACTATTTGGTAACTGTGTTTCAATTGAATCCTCAGAGTTATGCTAATTTATGGATTATATTTTTCCAGGAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGATGTAAGTTCTTCTTGGAACTTGGAACTACTCTGCAAAATAATATGGAAATGGTTTCATTATATTTATGCATGCTGGTTAGTGAGTAGTGATCCATGTGGGTTGGTTAGTTTTCTTTTCACTTGTTTCTGGAATTGAGGCTGTCGTTGCCTTATCATTGTTTTCCTAATATCCCAGGGATTAATTTTGTGTGACTTTTGAATTCTTAGGATGGTTCATTAAGAGGTCTAGATGTTTGGGTTTCATTTGCATTCATTGTTGAAGGCTGTGGGGTTATTTATCAATTTGGTTTAGTTCTGATGCATAAATTTTAAACATGGTGCAGCTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAGGTTAGTCACCCATATTTTTTCTGTTTGCAACTTCTTTACAATCCATTACATCTCAACCATGAAATTGATAAATCTTGGATCAGCAATTTGATTTGGTTAGTTGCACTATAAAGAGCTACTCGTTTACTCTCTATGTTTCAATATAAGTGTCTTAGTTTGACTCGACATAGACTTTAAGAAAATATGGAAAGACTTTTGAATTTGTGTAATCTACCAAATGTCCTTTGAATCTAATGGTCTTAAACGTGCCATGTAGAATGTTGGAATCAGAGAATTACTAAATTTTAAAAAGAGGCATTCATTTTCAAACAAACTAAGAAGGAAAGTAAGACACTGGAATTAAACGGAGGGAGCATAATTTTTGATGGCTTAGCGCCAACTCTCCCACTGTTTAGGATGTTATTATCTGTGCTTTGAACTTAAATTATCCAAGAGATAGGAGTTCTGTGTTTGTCATCTTCAAATTTTGGAACCAGTGTATTATATGATCTGAAAGCAGATAGTTGTGTACTCAAGTTTCTTGTTCAGTAGGATACTTTATGCTAAAGAATTGCTTGTGCTGATTATGACTACAAAACCTCCTGTCTGAGATGACAAAAGCAAATGAATCTTGATAAGGGTTTCCATGATCACCTGCCCAGACATCTTTCTCAGAACTCTTCCTCATTTTCTGCCATGTTTGTACAGTAAAGAAACTACGAAGAGGAATCTTTGCAGGAAGTTAACAGAATATAAAAACAGAAACCATGGATTCTTGCGATGTGGTTAACAGTGAAGATGATAAAAGATGCAGTATGCTATATTTGCTGCTGAGGAATAAAGGAAACTACCTCCTAGAATATAAAAAATGTTTTCAAAAGTTTCATTAGCCATCGAACAAAATTTTTCTGTATTTCAGTTTTTGATGATATGTTCGGTATTCCAGTTTTGAACAAGTTGATAGTTCATCTTTACTCTTGTTCAGCTATGGTTGATATTAACTGGGTTTTTTCCGGTTTATGTAAATTTGAATTTTGAAGCTATCAACCCACCCTTATAACAGTAGGATGAAAGAAAGAAAAACTCACTGATAAAAGAACATCATAGATTGTTGTTTAAATCTTGCATTTGCAGTGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAGGCAAGAAAAAGCCTACAACTATGATACTTTACTTCTTGCCTTGCACAAGCAAATTGAGTTCCTTTTTCCACCTGAATTTCATTCTTATACTAGTTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAGGTACTTTATGGAATTCCCGTGCATCTTCTCATGTTTTAAAAGAATTCCCTAGATCATTCTAATATAGGAGTAAATGTCATATTTATGTAATAAATGGATTTATGCCTCTTCTTTTCATGTTGTTGCTTGTCTACTGCAAAGGAAACAGGGTCGGTCTCTCTACATATTTTTTTTTTTGTTCTTTTTGTCTTTTTTTCATGGACGCGTGCGGCTCTGAGTCAATGATGAAGGGGTTGATCTCTGTACATCCGCAATGGATTTTTTAGTGATTGAACTTACTATCGTATAATATCGATATCTAGGTGTTATTTTGGAGATGAGTTATAGAGGGGGCATGAAAGTAAATCGTTAGAGAGGAAACCTTGATAGGCTAGTTACTAGTAGACAGTTTTAATTTTTGGTGTAAACAAGAGTACATTGAAGACAGTTTCTATCACATGATTTAGAATCACTATAGACAAGTAACTTACTAGTCTATATGCTTTATTCCCCCTGTGATTATTACTTAGGAGCCCTTTTTGTTAATCAGTACAAGCTTGTTACCATTTCAAAATAAAAATAAAAGTAAACCCAGCCTGCCTTGCTTTATCCTGGAGTCAAAACATACATTAGCAATGATTGAGGCATCAATGGTTTGTCTTCCTTAAATGAAGGCTAATTGATGAGTGGATAAGTTTCCAATGATCTTTTTTAATCTCCCTGCTTGTACTTTTGACTTGTAAAAGCTACCCACAAGACTGGTGGGCCTTAACTCATGCACTTAGCTCCAATCTTTTATGGGATAAGCCCAATGAAGGTGGTATTTAATCTCCTGGCAAAAGCATTGAAAAGACGAAACAAATGATATTCCAACATTTTTTAAAGAATCCCATAGTGAACCCATCCATCTCAGGAGCTTTGTTCCCCATAAAATCTTTGGTCACACTTCCTCCTTCGAAAAGGAACATTAGATGAAAACGTTGTTCTCATCGTAAAATAAACGAATATTAGCATGGGATCAAGAAGGCCTCAAGCCCCCTTGTTCACCATGAAGTGTGGAATAATTATTTATTTTTTTGATGACTGGAGTGTCCGTGCCAGCTTTGGCGCACCTAGACTAATTCCATGGGATACTTGCCACCTCCCACCAGCAAAATGTACCATGTAACTCCGTCCACCAAGGCTAGGAGCAGGATAGCTGGGAAGAATCACTCATGTTTTTTTATCTCGGCTGTGTTTTGAAGCTAAGACCTTAGAGGTCTCAACCACTTCATTGACCACTAGGCCACACTCTTGAATGCCTGTAAAAGGTGGAATAATTTGGAAGTATTTCGTTGATAATTGTCCCCACTTCAGGGACTGTTTCCCCATTGATAACCAAGGTGTACGAGTTTGAATCTTCAGTGTGCATTGCCAGTTTATGGAAAGACTAGTATTATTATATCCTTGTTGTAGCCATAAAGCCATAGATTTTTGTCTCCAGATATCTCCCCTTGTTTAACAGTATCTTCCAGATTCAATTGTAACCCAGCCTTCTATAATTATTCATCATCAGGTAGGACTCTATTCTCAGCCAGTTTGTCTTCAATCAAAATTCCAGGGAGTGTCGGATTATGGGTGTGAAGGTGCCTAAAGGAATGCTTGTTCCATTTTTGCCCTTCAGAAGTTTCAATGTTGATGCGAAGATAAAATCTGGACTTCCTTGCACATCAAAAGAAACCCACCACGAGCCAATAAGTTCCACAAAACCCTCTGACTACATTCACATATGTTCAAATTTGAAACAAGAGTTGTTCTGTAACCCCATTGAATTGCATTGGATTAGAAGGGGAGAGTGATCAGAAATAACTTTTGGGAGTACGGATTGCTTGATGAAGCCAAAGCAATCATCCAATTCCATGGAGGAAAAAAATCTATCAATTCTAGATGTCTCCGTTGAATATGTGCTAGGGTACCAAGTATATAAACCACCAATAAGGGGAGATCGATGAGTTCCAAATCCTCTATAAATTCCGAGAACTACGTCATACTAGATGAGGTATAGCTTGAAGGTCTCTCATAAATGAATCTAGTGACATTAAAGTCACTACAAATAGTCCAAGGCCCTTCCGACTTCCCCCGAGCAGCAGTGAGTTCCAACATAAATTTTGCCTTGCATTGCTAGAGTTAGTGGCATGGACTTCGGAAATAACATAGGAAGAATTAGAGGGAATGTGTGGAATAGAGAAAGAACATTTCAGCAGACATGAGCTGAATCCCAATGTTGTATCTTGAAAATTCTTGAAGATCATGAAGCTCCCTAGTATGCACTCCTTGGATGTTCTTGGACTTGGTGCGAGTCAGTGGTACGCTAGAGAATTCAAGATCATCCACTATGTGCTTTACTTTGTCTAGACTATCCAGGATCGTATCTGTTAGAAGATGAATAGGAATAGATTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTTGAGTAGAATATGAATAGAAATAGAAATAGAAATAGGAATAACTTGGTAAGGATTGTATTGTGGTGTTTATAAATAGGATCTCAATGTAATAATGTACACACAACAACAATTCGATAATGTTTTTCTCATATATTTCTCACATGGTATCAAAACCTCTACTATCTTTGTAGAAAGTCAAAGAACTTCCGCTGCCGGCGAGTGGATAATACCTATATATGTCGCCCGTCTAGCCAATAATTATGTTAACAAAAGTGACATCAATGATATATGCATGAACCCATATTCGAGGAAGAAAACTCAGCAGATGGGTCATCGTGCGTCAATTTTCGATGACTTTCTAGGAATGTTTTGTGTCAACCCCATATTCGTCAGTATTTGTGTAGCATCATGCTATCTTTCCAATGACTACTTTTTCATATTCAATTTGTGTAGCACACCGTGCCATCTTTTCAATGACTATTTTTTTATATCTGATTTGTGTAGCATCGTGTAATCATTTCGCTGACTACTTTTTTTCATTTTTAATTTTTGTAGCACCGTGCTATCTTTCTAGTGACTACTTTTTTTATATTTGATTTGTGTAGCACCATGCCATGCTTGTGGTGACTATCTTTCTTTGCATATCTTATTTGCGTAGCACCATGCATCTATCCGGACTATTTTTTATATTTAACTTGCGTAGTCCGTGAATTTCTAGAACTACTTTTTCATATCTGAGTTGCATAGCACTGTGTGTCTTTTCGATGACTCTTCGTCTTTCAGGTGACATCTGAGATCTGATCTGTGTAGGGTTGTGCCATCATTTCAACCTTACCAATATAATTTCTCTTATTCAGTAAGGTCTGCCATCATTCCGACCCTATCCATATTAATTCTCTTCTTCAATAGCTTCGTGCCATCAAACCAACTTTTCCTATATTATTTTTATTTCTAGTTGGGTCGTGCTATCATTTCAACCATACCCATATAATTTTATTTCATAAATTGTAGTGTTATCAAAGCCGCACTTTAAGCGTGCTTAAGCCTTGAAGCGAGGCTCAAAACGTGTTGAGCGCTTTGCCCCGCTTTATGTGCGCTTCAGTGTCGTCATTAAAGTTCTAAGGCAAAAGTTTCCTTGTCAATGAGCCTCTTATGAAGAAGTGATACTAAATAGTTGATATTTCACTTTATCATAATTTTTTTTCAATTTCTTTGGTCATATATTTGTCATTCGTGTTTATAATTTTTAGTCTTGGACTAAACATAAATATTTGTTTTCTTCTCTCTTTGCGCCTTGTTTCATTAAAGCCCACACTTTATTTGGGCTTTGCGCTTAAAGCTCCTACGAACCTTAGAGCTTTTTTGCGTTTTTCACCTTTGATAACACTGTTAAATTGTGACCTTTTTCAACCATCAAATCTAATATTCCTGCATATAAACATGTTCTATCCAGTTTTTCAATGATTTTCTTGTTTAATATCGACTCTTATTTTAATTCCAATATGATCCATATACTTTATACTAGATTTTAAGCACTTTCCGACAACCTTTGCATTGTAAAGAAGTCCATATGGAGCGAGTACATAATTTTGTTGCTTAGGGAGAGTTTAGTAGTCTTGTATGGCGATTGTGTTAGTCACTCTATGATCTGAAATCGCTTGTGCAAGCTTGGTTTGAGAAGTTCAACACCGTAATTTTATCACTCTGTGTATGCATCATATTCAGGAGAAGACTAAGCACATTGATATTGTTGTCAATTTTGTGAAGTCGAGTGATCAACTTGTAGATATCTCACCAAGCTCCTTATTGATCCTCATGTTAAATAAATTTATAATAAGCTAGCTACATGAACTATATGCACTAGCTTGTGTGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTATTAGAATAGGAATAGGTTTATACAATCCTATTTAGAATAGAATAGGAATAGAAATAGAAATAGAAATAAGAATAGAAATAGAAATAGAAATAGAAAATAGAAATAGGAATAGTAAATAGTATCCTACTCCCTCTGTCCCAATTTATGTGACTTACTTTCTTTTTTAGCAAGTCTTAAAAAGAATGACACATTTCTATATAAGTAAAAAATTAACTATAAAATAGTCCCTCCGTCCACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCGAACTATAAGAAATTTGACCAACATTTTGCGATGTATATTTTTATCATATTGATATGCAAAAAAAATGCAATTTATAGTTCTTTTCGTATAATTTTTGAATATCTAATTTTTTTTTAAAAAATATCGAATTAACCTAATCTAATTTAACTTTAAAAATTAGTCACATTGACTTTGGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTATTTATTTTACCTTTAATAAAACGATTCACAACCACAAATTTCTATCATTCATTTTGGACCACAAGTTTTAAAAGTGTTCCTTTCTTTCTTAAACTCTGTGTCGAGTCAAACTACCTCACATAAAATAAGACGGAGGGAGTATTTGTAAAGGATTGTATTGTAGTGTTTATAAATAGGTCTCAATGTATATAGGCATAGAGGAGTAGAAATAACTCAGTAGCTGTAAGATTCTGAGCTAGTAGGCTCATTTCCACCTCACCTTGTCATCTAGGAATGTAAGTTTGGCAAGCATACTAAGAATATGACTTAATGTGATATGTGTATCCCATGTGGAATAGGATAGTAGGTTTGGGTATATTTTAATTCTTGATCTATAGTTTTTAACGGTTAAAAAGATTTGTGGGACAAGAATGAATACTGAAGGTGTACAGACGGCTCATTCCTAAGGTTTTACCCACATTAACCTCTTCGATTAAAGTCACCTGGGTGAAATAAGTCATATAGCTGACAACTGTTGTCAGGCATAATTTCTTCTTCAAATGCCCCCTCCTTGATGTCATCAAAATATATAGTTGCTCTTAAAACTTTGGTTTGATCACTATAGATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAGGTACTAAATGGTATATGAATTATTTTTTCCAAGATGTGGTCAATGCAGTTTATCCTAAAACTATTTCGCTTCAGTTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAGGTAATTGGTTCGTTTGAGCTGCAAGCCTCTGTATCTTTCATTCAAGGTTAAAACAAATTCTGTGTCTGCTGTTGGGAATACAGTTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAGGTAACGCTAGAAAATGGCTCATTCAGTTGATATTTATTTGTGTTAGTCTTTATGAAAATAGTTTTTTTGTTGCAGTCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAAGTGTGTAAATCTTTGCCTCCTTTCTTCCCTTATATTATTTGTTTATTTCTCTCTTTATCTTCCTTCCCCACAGGCTGGCTCTTTTGGGGGAGGGGGAGCCACTTGGTTGTCTGATGGGGCTAATCACTAGGAGGTCTTCTGTGACTAAATAATGACTCTGCTGAAGCAGTTGAAATAATTCTACTTCTGATGGAATTATTCTGCTGTTAGACAACTATAAATCACTTACTTTTCTAGATTTTCTTTTGTTTCCTCTCAAAGTTACGATTCCACAGATGCTCATGATATCTTCAATGACAATATTGTGAACTTAGCCATTTTTTAAGCTTCGATTTTTTCTGTGTAGTCTGTAGTAGAACATTTGCACAGATTCAGGCTAAAAGTGTACTAATCTTTCTGGGAAACATATTAATACCTTAATATGAGCCTCAGGCATGGCGCCCAACATAAACTATGGTTTCAAAAGGTTCCTTAATCACTTAGGGACACTGAAACACTACTTCTGTGAGGGATGGGTAGTTTTATCTGGTACAACTAGCCTATAAACTTCCTTAAATGACAACATAAATGACCAAGTACAGGACAAAAAAGATTTTATTTAATAATGTCAACATTAAGTTTATAGAGATCATATCCTGTTGCCTCAAATACAGAATGTACAAGACAGAATAAAAAACTCTAAAACTTCTTTCTTAAACTTATTGTGCCTATAAAGTATAAAGCAGCGCAGTTAGACCTTTAACTTTGGGGTCCCAATTCATCAATCCTAACTTATATTAGTTATATAATTTGCACCTATGGATTTAAAACATTTTGAACTTCAAACTATTCTGTGTGTCTATCCTTGATAATTTCCATAAATCCTATTATGTTATGTATTTCAGGTTCTAAATTTTTGTCTAGCCTTAGTTGTAAAGTAGAAATTCAAGAAGATTGTCTCTGTATAGGCTACATTATCAGGCTAAAGAATGCAAAACTTTTAGGTGAACCATCTTCACGATACTTTCATGCACCTACACAAGGCTTGAATTTTTTTTGAATGGTCTACATCTATGAAAGAGATGTCTTACTATTGTCTCATGGCATATTGATTTTTCAATTTGTCTGTCTATCAAAAGAATTAACGTCCAGTGTCAATTTAATGAACTTGTCTGATTGGTTAAGTTTTACTTTAGTCCATCTTGTGAGCTGTTTGTCCCGGTGCACTTTTGTTTTTAAAAGGAGAAAAATTGAATACAAGTTCACAAAACCCGAGGATTGGCCTCTTGGGTTGTTCTTCCTTTTTACCACTCAGAGTGATTCTTGTACTCAATGTGGAAGTGTTTCACATATCAATATGTATTTCACTTGCACTTCTCCAGTTACGAATGTGGTTTCAGATTTGGTTGTCATTTCTTTAATCTATAGGTCTTTCATCTCTTTTGCTAGTTATATATATCGTGTTCATTTCTGTGCTTTCCTTATAAACTCATCATTTTTTTTCCCTAGGACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAA-ATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTT</genome_strand>
        <mrna_strand>CTTCCTCTCTCTCACTACATCAACA--C-ACTATCTGTTGTCTCTCTCCTACTCCTACTCTTCGTTTCGGAAAATACCCACATC--AT-ATCTCCATCCTTCCATCTTTTCGCAAGAATTTCCTCAAATTCGATTCTCCTACAACAGTACCGTTTGCTGTTACAGAATCTGATTCCCCCAAATCTCTTGAACCAGACCCTCAAACTCTTCTGCAACAAGTCGCT............................................................................................GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCACAGCTTCCTCGTGATCTTCGCTTAGAT..................................................................................................................................................................................................................................................................................................................................CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCGAGGAGGTTGGAGAGACATTGTTAAATATAAGCCGAGCATGGGAAATGGCTGATACATCAACATCCACAGCTTTAGTGGACAAGCTGCCTTTACTGACTGGCTCATTGACAGGCTCTCAAAAATCAG.................................................................................................CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTACAGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCAGGAGTTGAGGGTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG..........................................................................TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAAGCCTACACTGGAGCTGCCATCGCAGTCATCTTTAG...................................................................................TTTTCTTTCTTGGGAATTGAGTCAAGGCATACAGAGCATACCAGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG...........................................................................TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGTTTTTGCAACCGTGGGGCTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAAACTCGGTTGGATTAACTAAGCATCTTACTTTAAATATGGTGGCCTCCTTGAATTTGAGTATAATAGAGGTTC-TT--T-G-A---T---TGTTGCATCCTTGCTTCTGGCTTGCTGACTGCAAAGCTTGTTGTAAATA-AAAGTTGGCTTCTTAGATCTTTTGTAAATTTTTG-CTTTATG-TTTGGGGTTTTTCAGTCAATGTATCAATATTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M8900" ref_strand="-" ref_description="SGN-M8900 C2_At5g38890 [cosii_markers]">
      <seq>aaaatagaatactgcaaaaggcccgaacagagttttgttttcgagaggacttgtttgagtagccgttgctggagcatgacgatggctatggaagctgaaacccaggagttggtcacgccaggacaagtattaggtaaagcatcacagttgaaagctggaaagggggcttacgtttcaactgagaatggcactgtttacgcctctcttaccgggttccgttctcttatacctccgcattccgacgctgttgatcagagatcaacagtcgaagttactggtcataaagcccatggagcagttcctaagcctggttccgttgtttttgctagagttactaaggtgatggctagaacggcatcggcagacatagtgtgtgttgattccaaatctgtgcgtgagaaatttactggcattattaggcaacaagatgtcagagcaactgagattgacaaagtcgacatgcatttgtccttccgaccgggtgatattattcgtgcattggtgctatcacttggagatgcaagagcatattatctgtcaaccgcaaaaaatgagctgggtgttgtatctgctgaaagtgcagctggtggtaccatggttccaattagttggacagaaatgcagtgccctctaactggtcaagtagaaccgcgaaaggtggccaaagttgaagcttgagtagatcaaatcagattatgttgctcttaactgcaaccacaggaggaggtgggtgcaggaggcagctaccaagcttttctttgctcttgtattatacatttaagagtttgatagatttgctcctttattttgttgtgcgttatacattttgttagaatgtagaggactttctactttccgcccaccaggggcaagtttggggatatgatagtgtaggtcaagctcagtaaagtaatgtttattttgtattgagcacttccattggaccattttttaatctgttacatattttttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198L24-pUu3p/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0198L24.1" temp_strand="-" temp_description="C04HBa0198L24.1  CT476825.1 htgs_phase:3 submitted_to_sgn_as:C04HBa0198L24 sequenced_by:sanger upload_account_name:uk">
        <position start="128168" stop="121110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127868" g_stop="127614" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126706" g_stop="126632" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="330" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="125342" g_stop="125254" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123566" g_stop="123482" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="504" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="122899" g_stop="122818" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="586" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121799" g_stop="121411" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="975" r_length="389" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="976" polyA_stop="992"/>
      <MATCH_line gen_id="C04HBa0198L24.1" gen_strand="-" ref_id="SGN-M8900" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>975</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198L24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M8900" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="127868" e_stop="127614"/>
          <exon e_start="126706" e_stop="126632"/>
          <exon e_start="125342" e_stop="125254"/>
          <exon e_start="123566" e_stop="123482"/>
          <exon e_start="122899" e_stop="122818"/>
          <exon e_start="121799" e_stop="121411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAGGTTTTGTTCCTCTCTGAATCCTACTGTTTTGCATTCTGTAATGTGGATAGAGTTGTTCATGGTGCAGTTTGACTGGTTTTTGCTAGATTAATGCTAAAAAGCCAATACATTGGACGAGTTTTGTCAGAAGGTTTTCCTTCTTCTCAGCAATTGTTCTCCACTGCTGAACTTGTGGTGCCACTAACACAATCTAACAGAAAGTAACAGAGATTATCTGATTTCCCTTTCTCCCTCGGGCCAAGTAGCAAAAGGGACGGCTATTAAGTGAATCCATATTTCTCTAAGTTTTTTTATGCTATTTGTTTTCTCAAGTCAGATATAGTTTGAAACTTGCAACTTTTTTCTTTTGCCAATTGGGTTTTTTGTTGTTATAACCTATAACCGTGGTGTACGGGCTAGTTTGCCTGCATCTACTAATTCCACCGGGATACCTCCATCAATCATCAACAACGAGTTAGCTATTCTAAGGGTGGGATAGGGGGCAGAATTTCTTTGAATATGTTCTTGAATTCATTGGTATTTTTGTATCTGTTGGGATTTGAACTTGGTACCTTTGGGTGCCAATTAGAATTTTCCTGAAAAGGTTAAATGCCTTGAACACTAATGAATTAGCTAAGAAAAACAATCTGGAATGATTTGATCCAAAAAGAAAAGAAAGAAGGCATTGTACTCCAATTTTCACTGGGTGTTTTACTTCATACATAACCTGATCAAAGAACTTTGTTTGTTCTCTGATTTCATTGATGTGAGATGGATAACTCTAGCAGATTCTTAAGAGCTTTCATACATGAGCATGATTATTTCAGTAATAAGATTTTTATTTGGAACATTAATCTATTGCTGTTGTTTTCATCACTTTCTGTTGTTTAAATGACAATATTTTCCTCTATTTTGCAATCTTCATCAGAGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGAGTGAGTTTTCTTGGTTAAGACAATATAATGATAGTTTTCATGAATATCTGTGTTAACGTTTGTGTTACCCGAAATTGATAGTTGTTCCTTGAGTATGATAACACAGTCATCACTCTTTCTAGCAGTGCTTGCCCATCTGTAAAACATTGCTTCTTGTCTCAAAGACTAAGTGTATGCAAAAACAGCTACAATATGATAGTTTTCATCTTTTTTCTTTTTGAAAATTTTTAAGCTAGAGGTGTCAGATATTTGGTGCAAAGGCAAAAACTTTGGCATTTTTCTTTTTTCCTTCTGTCATTGGTTGAACATATGTGCTTTATTTTTGTCTTTTTTCTTTCCTAAATTACCGAGGACTTCACTAACTATCAAAAAAAAAAAATTCCCAAAACTTGACTAATTGCATGACTTTTTGTCAATTGTAGTTTATCTTGGGTACCTATGTTTTTGGTTCTTTCATTGAATGCCATTAAAGTGGAACATTATCAATGTGATATCATAATTCATGCTTTTATCTTCTCTACCATTTTCTTAGTAATTGTATAATTGTAAAACAACTTCAACCATTTGGAGACATGTCCCTGGATAGGAAGGTATGAAGGTCGAGGATTAGGGTAGAAGGGCAGTAGGTAGTCGAGTGGTGTCGCACTATATGTGGGAAAGGCTGGGGCTAGCTCCTCCCTATTAGTAGTATTTCATAGTCGCGTAGTTTCGTATTCTTCAATCTATATTACTATATGTTGCTTCAATTTCTGGATATCTTGCTATTTCTTATCATATTTCCTTGCAACCCTAATTCAGAAAACTTCTGAGTAGAGGTTCTATCAAAAACCTTATTCTACCCCCACAAAGGTAGGGGTAAGGTCTGCCTACATCTCACCCTCCCTAGACCCCACTTGTGAGATTACATTTTTTTTTTGTTATTATTATATAATTGTAAAAAAGAAAAGAGAGAGAACTGCGAATGTGCTTCCCTTTATGCTTGTTCCTTAATATTATCGTAGAACTGGTAATATATGCTCTTCTTTCAACCAGGAAGAGCAATAATGTAGAAGAAATAGAAAACGTAGGTACTAGTCTATACTACCTTTTTCTGCTTCAACTCATTCTTGATTGTGATATAGAGGTGTAGATTCTTTAGGTTAGAAAGATATCCTTCAAAATTTAATTGGATTTATGTAAGCAATGGACTTCCTTTTTTTATCATTATTTGATAAGTCATTTCTTTGGCCACAGTCTACAGACCTTTTTCAGACGATTTCTCTTTTCAATTAGTTGACTTTTTTTGACAGGTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAGGTGAGTTAATTTGATTTTCTTTTTCAATTGAAAATTGCAACAACAGGTTAGGGTGAATTTTGAAGTGTGATTTCATCAAGGGTTTCTCATTTGTCAAGTATTTTGGACAAAATGGCTGAAGAACTCTGTTGGGGCGTAATACAGAGCCTCATTTGACAGAATGATTGCTCTTCTAATGAAGTATGAGACATAAAGAAAATAGAATGTGCACTGGTGTATAACCGTTATTTAATCAGCGGTTATGGTGTAAGTTAGTTATATGAGAAGATAGGAGTGGTGTTTATGAAGGGTACTGATGATAGTTGGGCTGACAAATACATAGTATTAACAGGTTAATTTTCTTCTTTGAGAGGTTGTGTTCAACCTAATTTGATCATTCATGATAGGAGATAGATTAGGGCATGTTGTGGTATAGGTAGGGTGTATGATTGAGGCTCTATGTAGTATGTGGTCTTTGTAGACTTGCATCCCTGCATGCACTTGTTAAAGTATGAACCATATTGATGCAGATCATTTTACCGTGTTAAGTTTGCTTACTGGTATTTTCATGCTGATTCTCTAAACAATATAATCTTACCAACCACTCTAAGTATCACAAAGTGCAAAATATGGTTGATTTCCTTTAAATAATTCACGGGCTACACTTTGATTTGAAACCTCTACTCCATACAATTATAATGACTGAATTTTACATTGTTGCAATGATTACTTTGAAAACGGGCTTCATGTGATGACCATTGATCATAAAGTTACTGTTGTTATTATTATTATTTTTCTTTTTTCTTTCTCAAAAGGAAAAGTTGGCTGCCTTATCTTTTAGTTCAAAATTGGATATTATGTTGCGGGTCATGAATTATTCATCATGCAGTAAGAAAATGTATATAATACATGGTTATACAGTTCAATTTATTTGTGTTTCTAACACGTGTACTGGATATTCTATCTCTGCAATTTCATTGTCTGGTTGCATTGAATTAATTTCACAATCTGAGTGAAGTTGATGCTTAATACAAGACCTTCACAATAATCTTGTGTTAATAGCAAAGGGGACAAAGACTTGTCAAAAGAATAAATTGAAGGGGATAAAGAAAATTTGACACTCTAAATATCTTGTAGAGTTAATTCTTTTTTGGAGAAAACTTAACAAATTTGTTTAACTTAAATTTTTTGATACAAGAGTTAATTATTGTAGAAAAATGTAGTCCAGTGGCTATTGGTTTAAATTTAACGCTTAATTTACATCTTTGGAGACGTCAAACATCTCAGCTAATCTGTGAATAGTGTCACAGCAAGCAAGATGTATTTCCTGTTGTTACATAATTGAAGGTAAGGATGTTTTGATATGCTGTTTCCCTTTCCAAAAAGACGACCCCTTTGGTTAGTCATGTATGTACCATAAAGCCTATGACGACTCGTAAATTGCAGATCATTAAATACTGATTTTTCACTTTTAACACTCCTCGGATATTTGTCTATCTTAGTGCATACAATTCATATTGGGTTTCAATCTCCGCTTTTACTACATCTATTTGTTGAATCACAGCAGTTGATATTTTCAGATAGCACTATTTTACTTATAGAATCCCATCCTTTATCATGCTGACTTGCTTTACATGCTCGTTAACTGACTCTGCAGTGCGGCAAGATTTTGGCACAGAAAATCTGAAACTTTCTTCTGAATGAACAGGCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTGGTAATTTTCTATTAATTTTTATGACTAAGAATGGAATAAACTTTTGAGTGTAGCTAATCCCCAAAAGCCGCCTAAGGCAAATGTAAAAAGCTAGTAATTATTGTCCAGGCAACTGAAGTAAAAAAAAGGTATGTGAAGAGTATAATTCTAAATTCAGAAGGCGTGCTGCATACAGTGCAGGTTAATGGGTTAATTGATAGTCGAGATCTTTGGTTGCATTTTTAGTCCATCTTCGATCAAAAGAATCATTACAAGCCATTGGGTGTTTACACTTAGGGGTCGTTTGGTGTGAGGGATAAGAATAAGTAATCCTGGGATAAAAGTTCGGTGTATTGTTTGGTTGCATGTTAGGGATAACTTATCCCACCATTTATACCATAGTGATGGGATAAGTTATCCCACTTACATGGTGGGATCCCAGCATAACTATCCCAGGATAATCCTGGGATAACTTGTTCCCAACCAAACGACTCCTTAGTGTTTGGGGAATCTTTGTTGTGATTTCCTGGAACTAAACTTGTTTGTAAAGTTTGTTGACTTGCTTCTTATTGAGTATAATTTGTTATGTTCTTTCTTGAAAAGCTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTGGTAAGGCTTTCTTCTCAACTATTTCATTTTGCTTTTCCATTTTCGGTCGACTTAGTTGATGCAGTTAAATTTGATTCAGAACATGACTGACTGGTTCTGAATATTGAGTATAAATGAAACACGTACTACCATCTTGCTCGCCAGAGTATTTTCACTTGAAATGATCGTTGTAAATGCAGATGATGAATTTACTTGCCAGAAAAGCATACGAGAAATTAGTCATTGTTACTGTGTTTAACAAAATCTAAATTCGTATACAAGCTTCATGTGATCTTTGATTCTGCAGACATTAAACATAGGACCTTGTCAAATAAACATCATACCGAGTAGCGTGGTATGCTAAATATCTAGTAAATGGAATCGGTCGACAACAAAGGAGGTTTCAAGTTCAACTCCTAGTATAGGCAAAGAAACACTAGGTGGTTATTTTCTCATCTATTTTTCAAAGCCTGGGTGAACAGAGAATTCCGGTACCTATGCTGATGGGGAGATAGCACGTACCCAGTGAAATAGTTGAGTTGTGCACAAATTTTCTCAAACACCATAAAAAATATCTAATTAATGGATTAATTAGAAGTTAAACCTCCTTGTGCAAGTATATTCCCAAATTTACTGTAGAAGTGGCTCCGCCTCCAGATTGACTTCAAGGAAAGAAAGGACCGGGCAATTCTGTCTGTTCTGGAGCTTACCTTATTATTAAGGGAAAAAAGCCTTTTCTTTTATAGATGTTGAGGTGAGTTAGGGGGAAGGGCCGCAGCTTAGGGCTTTTCATTCATCTAGAGAAAATTTGAATCCCAAAACCTCATTGTATGGAGGGGATAGTTGGCGTAAACCCTTCGCATTTCCATCTAAGTTAGGCACACAACTGCGATTTGAGATTATATAGTAGCCAGTTTATTTGCAGAAGCTACTATATTTATTTATAGGAAGATGTTATTTATTAATTTTTACATGTTTCAGATTTTCCTAGGGTTTGCATGGTTTAGGTTCTTAAAAAGGTGGTTAACAAACTTTGCAGGTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAG</genome_strand>
        <mrna_strand>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="119965" PGL_stop="109767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119965" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117903"/>
            <exon e_start="117809" e_stop="117729"/>
            <exon e_start="112240" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.465" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="119965" e_stop="119671" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="118035" e_stop="117903" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.465" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117902" i_stop="117810" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117809" e_stop="117729" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117728" i_stop="112241" i_length="5488"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112240" e_stop="112191" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="10" e_score="0.979">
            <gDNA_exon_boundary e_start="110194" e_stop="109767" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119965" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117809" stop="117729"/>
              <exon start="112240" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4695" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATATGGCTCTCGCCCAACTCCAGTTGTCAAAAAATAATACTAGTAATTCTCTTCTCTTGTGCTTCAATGGCTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG : TTAGCATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : TATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTTGTGATCTTCTCGTGATGTGTTTCCTCAAGAGGGATGCTTCTTGAGGAATTTGGTTGTTTTGTGTTGTCTCTCTGTTAGCATAGAAACACTTGTCTCATATTGATAATGTCAAGTGTCTTATCTTTAGAACTTTATGATGTG</gDNA_template>
            <first_frame> N  M  A  L  A  Q  L  Q  L  S  K  N  N  T  S  N  S  L  L  L  C  F  N  G  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  S :   *  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  S :   I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L  V  I  F  S  *  C  V  S  S  R  G  M  L  L  E  E  F  G  C  F  V  L  S  L  C  *  H  R  N  T  C  L  I  L  I  M  S  S  V  L  S  L  E  L  Y  D  V </first_frame>
            <second_frame>  I  W  L  S  P  N  S  S  C  Q  K  I  I  L  V  I  L  F  S  C  A  S  M  A  S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S   : V  S  I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S  L  *  S  S  R  D  V  F  P  Q  E  G  C  F  L  R  N  L  V  V  L  C  C  L  S  V  S  I  E  T  L  V  S  Y  *  *  C  Q  V  S  Y  L  *  N  F  M  M   </second_frame>
            <third_frame>   Y  G  S  R  P  T  P  V  V  K  K  *  Y  *  *  F  S  S  L  V  L  Q  W  L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  :  L  A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  C  D  L  L  V  M  C  F  L  K  R  D  A  S  *  G  I  W  L  F  C  V  V  S  L  L  A  *  K  H  L  S  H  I  D  N  V  K  C  L  I  F  R  T  L  *  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119964" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117903"/>
                    <exon start="117809" stop="117739"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLSPNSSCQKIILVILFSCASMASSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSVSIWKALVISWKKVPVHGTIWRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117738" stop="117729"/>
                    <exon start="112240" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAEVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="119894" e_stop="119671"/>
            <exon e_start="119578" e_stop="119519"/>
            <exon e_start="119196" e_stop="119149"/>
            <exon e_start="118035" e_stop="117903"/>
            <exon e_start="117805" e_stop="117729"/>
            <exon e_start="112289" e_stop="112191"/>
            <exon e_start="112116" e_stop="112046"/>
            <exon e_start="111962" e_stop="111872"/>
            <exon e_start="111796" e_stop="111683"/>
            <exon e_start="110194" e_stop="109908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.967" e_score="0.871"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.950"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.979"/>
          <exon-intron don_prob="0.465" acc_prob="0.000" e_score="0.947"/>
          <exon-intron don_prob="0.926" acc_prob="0.971" e_score="0.987"/>
          <exon-intron don_prob="0.985" acc_prob="0.186" e_score="0.960"/>
          <exon-intron don_prob="0.989" acc_prob="0.983" e_score="0.958"/>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.967"/>
          <exon-intron don_prob="0.928" acc_prob="0.845" e_score="0.965"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.871">
            <gDNA_exon_boundary e_start="119894" e_stop="119671" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.967">
            <gDNA_intron_boundary i_start="119670" i_stop="119579" i_length="92"/>
          </intron>
          <exon e_serial="2" e_score="0.950">
            <gDNA_exon_boundary e_start="119578" e_stop="119519" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119518" i_stop="119197" i_length="322"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="119196" e_stop="119149" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="119148" i_stop="118036" i_length="1113"/>
          </intron>
          <exon e_serial="4" e_score="0.947">
            <gDNA_exon_boundary e_start="118035" e_stop="117903" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.465" acc_prob="0.000">
            <gDNA_intron_boundary i_start="117902" i_stop="117806" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="117805" e_stop="117729" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.926" acc_prob="0.971">
            <gDNA_intron_boundary i_start="117728" i_stop="112290" i_length="5439"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="112289" e_stop="112191" e_length="99"/>
          </exon>
          <intron i_serial="6" don_prob="0.985" acc_prob="0.186">
            <gDNA_intron_boundary i_start="112190" i_stop="112117" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="0.958">
            <gDNA_exon_boundary e_start="112116" e_stop="112046" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.989" acc_prob="0.983">
            <gDNA_intron_boundary i_start="112045" i_stop="111963" i_length="83"/>
          </intron>
          <exon e_serial="8" e_score="0.967">
            <gDNA_exon_boundary e_start="111962" e_stop="111872" e_length="91"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111871" i_stop="111797" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.965">
            <gDNA_exon_boundary e_start="111796" e_stop="111683" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.928" acc_prob="0.845">
            <gDNA_intron_boundary i_start="111682" i_stop="110195" i_length="1488"/>
          </intron>
          <exon e_serial="10" e_score="0.875">
            <gDNA_exon_boundary e_start="110194" e_stop="109908" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119894" stop="119671"/>
              <exon start="119578" stop="119519"/>
              <exon start="119196" stop="119149"/>
              <exon start="118035" stop="117903"/>
              <exon start="117805" stop="117729"/>
              <exon start="112289" stop="112191"/>
              <exon start="112116" stop="112046"/>
              <exon start="111962" stop="111872"/>
              <exon start="111796" stop="111683"/>
              <exon start="110194" stop="109908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4695-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCCTCTATCTCACTTCATCAACACTCGTCTATCTATTGTCTCTTTTCTACTCCTACTCTTCGTTTTGGCAAACACCCACATCATATCATCTCCATCCTTCCATCATTTCGCAAGAATTTCCTCAAATTTCATACACGTACAACAGTACCGTTTGCTGTTACTGAATCTGATTCCCCCAAATCTCTTGAACCAAACCCTCAAACACTTGTACAGGAAATCGCT : GAGAGTTTTGTTCTACCTGCAGACTTTTTTTCGCAGCTTCCCAGTGATCTTCGCTTAGAT : CTGAATGATGCAGCATTTGATCTTTCAAATGGGCCAGTTAAAGTTGAG : TGTGGTGAAGAGGTTGGAGAGACATTGTTAAATATAAGTCGAGCATGGGAAATGGCTGATACATCAACGTCCACAGCTTTAGTGGACAAGCTGCCTTTATTGGTTGGCTCATTGACAGGCTCTCAAAAATCAG : CATTTGGAAGGCGCTTGTTATCAGCTGGAAAAAGGTTCCAGTCCATGGGACAATATGGCGAAGGTGAAGTGCAGAAG : ATTGCTAAAGTTATGATAAAGACTGGAAAGTTGTTGTCTGCAAGTCCAGTATCTGGGGTTGATGTTGAAGAATTTAAGCAGCAAACCAGGATGTTCAAG : TTTGGGGATCTTCAGGTTGAATTGACCTCTGGAAAGGCCTACACTGGAGCTGCCATTGCATTCATCTTTAG : TTTTCTTTCTTGGGAATTGGGCCAAGGCATACAGAGCATACCGGAGAGCTCATTACAGTATGCAAATGACAATGCTTTATTGCTTGCTAAG : TCTCTGCGAGCATCTCTGCTTGTGATGTCCTATTCATCAACCGTTTTAGCTGCTTTTGCAATGGTGGGACTTATTTTACTTGGGGGACAACTTAAGTCGGAAAATAAGTGAGAA : GACATTCCTGTTACTGATAGACTAAAATGTGGATCAACAGACTGTTACTGGAATTCCAATGGTATCAGTAGACTCGGTTGGATTAACTAAGCATCTTACTTTAAAATGGTGGCCTCCTCGAATTTGAGTATAATAGAGGTTCTTTGCTCGTAGTTTCAATGTTGCATCCTTGCTTCTGGCTAACTGACTGCAAAGCTTGTTGAAAATATTATTTTGGCTTCTTGGTTCTTTTGTAAATTTTTGTTTTTAGGCCATGTCTTCTTCCAGTCAATGTATCAATATTCCTT</gDNA_template>
            <first_frame> L  P  L  S  H  F  I  N  T  R  L  S  I  V  S  F  L  L  L  L  F  V  L  A  N  T  H  I  I  S  S  P  S  F  H  H  F  A  R  I  S  S  N  F  I  H  V  Q  Q  Y  R  L  L  L  L  N  L  I  P  P  N  L  L  N  Q  T  L  K  H  L  Y  R  K  S  L :   R  V  L  F  Y  L  Q  T  F  F  R  S  F  P  V  I  F  A  *  I :   *  M  M  Q  H  L  I  F  Q  M  G  Q  L  K  L  S :   V  V  K  R  L  E  R  H  C  *  I  *  V  E  H  G  K  W  L  I  H  Q  R  P  Q  L  *  W  T  S  C  L  Y  W  L  A  H  *  Q  A  L  K  N  Q  :  H  L  E  G  A  C  Y  Q  L  E  K  G  S  S  P  W  D  N  M  A  K  V  K  C  R  R :   L  L  K  L  *  *  R  L  E  S  C  C  L  Q  V  Q  Y  L  G  L  M  L  K  N  L  S  S  K  P  G  C  S  S :   L  G  I  F  R  L  N  *  P  L  E  R  P  T  L  E  L  P  L  H  S  S  L   : V  F  F  L  G  N  W  A  K  A  Y  R  A  Y  R  R  A  H  Y  S  M  Q  M  T  M  L  Y  C  L  L  S :   L  C  E  H  L  C  L  *  C  P  I  H  Q  P  F  *  L  L  L  Q  W  W  D  L  F  Y  L  G  D  N  L  S  R  K  I  S  E  K :   T  F  L  L  L  I  D  *  N  V  D  Q  Q  T  V  T  G  I  P  M  V  S  V  D  S  V  G  L  T  K  H  L  T  L  K  W  W  P  P  R  I  *  V  *  *  R  F  F  A  R  S  F  N  V  A  S  L  L  L  A  N  *  L  Q  S  L  L  K  I  L  F  W  L  L  G  S  F  V  N  F  C  F  *  A  M  S  S  S  S  Q  C  I  N  I  P  </first_frame>
            <second_frame>  F  L  Y  L  T  S  S  T  L  V  Y  L  L  S  L  F  Y  S  Y  S  S  F  W  Q  T  P  T  S  Y  H  L  H  P  S  I  I  S  Q  E  F  P  Q  I  S  Y  T  Y  N  S  T  V  C  C  Y  *  I  *  F  P  Q  I  S  *  T  K  P  S  N  T  C  T  G  N  R   : *  E  F  C  S  T  C  R  L  F  F  A  A  S  Q  *  S  S  L  R   : S  E  *  C  S  I  *  S  F  K  W  A  S  *  S  *   : V  W  *  R  G  W  R  D  I  V  K  Y  K  S  S  M  G  N  G  *  Y  I  N  V  H  S  F  S  G  Q  A  A  F  I  G  W  L  I  D  R  L  S  K  I  S :   I  W  K  A  L  V  I  S  W  K  K  V  P  V  H  G  T  I  W  R  R  *  S  A  E   : D  C  *  S  Y  D  K  D  W  K  V  V  V  C  K  S  S  I  W  G  *  C  *  R  I  *  A  A  N  Q  D  V  Q   : V  W  G  S  S  G  *  I  D  L  W  K  G  L  H  W  S  C  H  C  I  H  L  *  :  F  S  F  L  G  I  G  P  R  H  T  E  H  T  G  E  L  I  T  V  C  K  *  Q  C  F  I  A  C  *   : V  S  A  S  I  S  A  C  D  V  L  F  I  N  R  F  S  C  F  C  N  G  G  T  Y  F  T  W  G  T  T  *  V  G  K  *  V  R   : R  H  S  C  Y  *  *  T  K  M  W  I  N  R  L  L  L  E  F  Q  W  Y  Q  *  T  R  L  D  *  L  S  I  L  L  *  N  G  G  L  L  E  F  E  Y  N  R  G  S  L  L  V  V  S  M  L  H  P  C  F  W  L  T  D  C  K  A  C  *  K  Y  Y  F  G  F  L  V  L  L  *  I  F  V  F  R  P  C  L  L  P  V  N  V  S  I  F  L </second_frame>
            <third_frame>   S  S  I  S  L  H  Q  H  S  S  I  Y  C  L  F  S  T  P  T  L  R  F  G  K  H  P  H  H  I  I  S  I  L  P  S  F  R  K  N  F  L  K  F  H  T  R  T  T  V  P  F  A  V  T  E  S  D  S  P  K  S  L  E  P  N  P  Q  T  L  V  Q  E  I  A  :  E  S  F  V  L  P  A  D  F  F  S  Q  L  P  S  D  L  R  L  D  :  L  N  D  A  A  F  D  L  S  N  G  P  V  K  V  E  :  C  G  E  E  V  G  E  T  L  L  N  I  S  R  A  W  E  M  A  D  T  S  T  S  T  A  L  V  D  K  L  P  L  L  V  G  S  L  T  G  S  Q  K  S   : A  F  G  R  R  L  L  S  A  G  K  R  F  Q  S  M  G  Q  Y  G  E  G  E  V  Q  K  :  I  A  K  V  M  I  K  T  G  K  L  L  S  A  S  P  V  S  G  V  D  V  E  E  F  K  Q  Q  T  R  M  F  K  :  F  G  D  L  Q  V  E  L  T  S  G  K  A  Y  T  G  A  A  I  A  F  I  F  S :   F  L  S  W  E  L  G  Q  G  I  Q  S  I  P  E  S  S  L  Q  Y  A  N  D  N  A  L  L  L  A  K  :  S  L  R  A  S  L  L  V  M  S  Y  S  S  T  V  L  A  A  F  A  M  V  G  L  I  L  L  G  G  Q  L  K  S  E  N  K  *  E  :  D  I  P  V  T  D  R  L  K  C  G  S  T  D  C  Y  W  N  S  N  G  I  S  R  L  G  W  I  N  *  A  S  Y  F  K  M  V  A  S  S  N  L  S  I  I  E  V  L  C  S  *  F  Q  C  C  I  L  A  S  G  *  L  T  A  K  L  V  E  N  I  I  L  A  S  W  F  F  C  K  F  L  F  L  G  H  V  F  F  Q  S  M  Y  Q  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119892" stop="119671"/>
                    <exon start="119578" stop="119519"/>
                    <exon start="119196" stop="119149"/>
                    <exon start="118035" stop="117903"/>
                    <exon start="117805" stop="117729"/>
                    <exon start="112289" stop="112191"/>
                    <exon start="112116" stop="112046"/>
                    <exon start="111962" stop="111872"/>
                    <exon start="111796" stop="111686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>909</number_coding_nucleotides>
                  <number_encoded_amino_acids>303</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSISLHQHSSIYCLFSTPTLRFGKHPHHIISILPSFRKNFLKFHTRTTVPFAVTESDSPKSLEPNPQTLVQEIAESFVLPADFFSQLPSDLRLDLNDAAFDLSNGPVKVECGEEVGETLLNISRAWEMADTSTSTALVDKLPLLVGSLTGSQKSAFGRRLLSAGKRFQSMGQYGEGEVQKIAKVMIKTGKLLSASPVSGVDVEEFKQQTRMFKFGDLQVELTSGKAYTGAAIAFIFSFLSWELGQGIQSIPESSLQYANDNALLLAKSLRASLLVMSYSSTVLAAFAMVGLILLGGQLKSENK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="127868" PGL_stop="121411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127868" e_stop="127614"/>
            <exon e_start="126706" e_stop="126632"/>
            <exon e_start="125342" e_stop="125254"/>
            <exon e_start="123566" e_stop="123482"/>
            <exon e_start="122899" e_stop="122818"/>
            <exon e_start="121799" e_stop="121411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.898" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="127868" e_stop="127614" e_length="255"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.992">
            <gDNA_intron_boundary i_start="127613" i_stop="126707" i_length="907"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="126706" e_stop="126632" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.994">
            <gDNA_intron_boundary i_start="126631" i_stop="125343" i_length="1289"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="125342" e_stop="125254" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.898">
            <gDNA_intron_boundary i_start="125253" i_stop="123567" i_length="1687"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123566" e_stop="123482" e_length="85"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.968">
            <gDNA_intron_boundary i_start="123481" i_stop="122900" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="122899" e_stop="122818" e_length="82"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.988">
            <gDNA_intron_boundary i_start="122817" i_stop="121800" i_length="1018"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="121799" e_stop="121411" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127868" stop="127614"/>
              <exon start="126706" stop="126632"/>
              <exon start="125342" stop="125254"/>
              <exon start="123566" stop="123482"/>
              <exon start="122899" stop="122818"/>
              <exon start="121799" stop="121411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M8900" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATAGAATACTGCAAAAGGCCCGAACAGAGTTTTGTTTTCGAGAGGACTTGTTTGAGTAGCCGTTGCTGGAGCATGACGATGGCTATGGAAGCTGAAACCCAGGAGTTGGTCACGCCAGGACAAGTATTAGGTAAAGCATCACAGTTGAAAGCTGGAAAGGGGGCTTACGTTTCAACTGAGAATGGCACTGTTTACGCCTCTCTTACCGGGTTCCGTTCTCTTATACCTCCGCATTCCGACGCTGTTGATCAG : AGATCAACAGTCGAAGTTACTGGTCATAAAGCCCATGGAGCAGTTCCTAAGCCTGGTTCCGTTGTTTTTGCTAGA : GTTACTAAGGTGATGGCTAGAACGGCATCGGCAGACATAGTGTGTGTTGATTCCAAATCTGTGCGTGAGAAATTTACTGGCATTATTAG : GCAACAAGATGTCAGAGCAACTGAGATTGACAAAGTCGACATGCATTTGTCCTTCCGACCGGGTGATATTATTCGTGCATTGGTG : CTATCACTTGGAGATGCAAGAGCATATTATCTGTCAACCGCAAAAAATGAGCTGGGTGTTGTATCTGCTGAAAGTGCAGCTG : GTGGTACCATGGTTCCAATTAGTTGGACAGAAATGCAGTGCCCTCTAACTGGTCAAGTAGAACCGCGAAAGGTGGCCAAAGTTGAAGCTTGAGTAGATCAAATCAGATTATGTTGCTCTTAACTGCAACCACAGGAGGAGGTGGGTGCAGGAGGCAGCTACCAAGCTTTTCTTTGCTCTTGTATTATACATTTAAGAGTTTGATAGATTTGCTCCTTTATTTTGTTGTGCGTTATACATTTTGTTAGAATGTAGAGGACTTTCTACTTTCCGCCCACCAGGGGCAAGTTTGGGGATATGATAGTGTAGGTCAAGCTCAGTAAAGTAATGTTTATTTTGTATTGAGCACTTCCATTGGACCATTTTTTAATCTGTTACATATTTTTTGAG</gDNA_template>
            <first_frame> K  I  E  Y  C  K  R  P  E  Q  S  F  V  F  E  R  T  C  L  S  S  R  C  W  S  M  T  M  A  M  E  A  E  T  Q  E  L  V  T  P  G  Q  V  L  G  K  A  S  Q  L  K  A  G  K  G  A  Y  V  S  T  E  N  G  T  V  Y  A  S  L  T  G  F  R  S  L  I  P  P  H  S  D  A  V  D  Q  :  R  S  T  V  E  V  T  G  H  K  A  H  G  A  V  P  K  P  G  S  V  V  F  A  R  :  V  T  K  V  M  A  R  T  A  S  A  D  I  V  C  V  D  S  K  S  V  R  E  K  F  T  G  I  I  R :   Q  Q  D  V  R  A  T  E  I  D  K  V  D  M  H  L  S  F  R  P  G  D  I  I  R  A  L  V  :  L  S  L  G  D  A  R  A  Y  Y  L  S  T  A  K  N  E  L  G  V  V  S  A  E  S  A  A   : G  G  T  M  V  P  I  S  W  T  E  M  Q  C  P  L  T  G  Q  V  E  P  R  K  V  A  K  V  E  A  *  V  D  Q  I  R  L  C  C  S  *  L  Q  P  Q  E  E  V  G  A  G  G  S  Y  Q  A  F  L  C  S  C  I  I  H  L  R  V  *  *  I  C  S  F  I  L  L  C  V  I  H  F  V  R  M  *  R  T  F  Y  F  P  P  T  R  G  K  F  G  D  M  I  V  *  V  K  L  S  K  V  M  F  I  L  Y  *  A  L  P  L  D  H  F  L  I  C  Y  I  F  F  E </first_frame>
            <second_frame>  K  *  N  T  A  K  G  P  N  R  V  L  F  S  R  G  L  V  *  V  A  V  A  G  A  *  R  W  L  W  K  L  K  P  R  S  W  S  R  Q  D  K  Y  *  V  K  H  H  S  *  K  L  E  R  G  L  T  F  Q  L  R  M  A  L  F  T  P  L  L  P  G  S  V  L  L  Y  L  R  I  P  T  L  L  I  R :   D  Q  Q  S  K  L  L  V  I  K  P  M  E  Q  F  L  S  L  V  P  L  F  L  L  E :   L  L  R  *  W  L  E  R  H  R  Q  T  *  C  V  L  I  P  N  L  C  V  R  N  L  L  A  L  L   : G  N  K  M  S  E  Q  L  R  L  T  K  S  T  C  I  C  P  S  D  R  V  I  L  F  V  H  W  C :   Y  H  L  E  M  Q  E  H  I  I  C  Q  P  Q  K  M  S  W  V  L  Y  L  L  K  V  Q  L  :  V  V  P  W  F  Q  L  V  G  Q  K  C  S  A  L  *  L  V  K  *  N  R  E  R  W  P  K  L  K  L  E  *  I  K  S  D  Y  V  A  L  N  C  N  H  R  R  R  W  V  Q  E  A  A  T  K  L  F  F  A  L  V  L  Y  I  *  E  F  D  R  F  A  P  L  F  C  C  A  L  Y  I  L  L  E  C  R  G  L  S  T  F  R  P  P  G  A  S  L  G  I  *  *  C  R  S  S  S  V  K  *  C  L  F  C  I  E  H  F  H  W  T  I  F  *  S  V  T  Y  F  L   </second_frame>
            <third_frame>   N  R  I  L  Q  K  A  R  T  E  F  C  F  R  E  D  L  F  E  *  P  L  L  E  H  D  D  G  Y  G  S  *  N  P  G  V  G  H  A  R  T  S  I  R  *  S  I  T  V  E  S  W  K  G  G  L  R  F  N  *  E  W  H  C  L  R  L  S  Y  R  V  P  F  S  Y  T  S  A  F  R  R  C  *  S   : E  I  N  S  R  S  Y  W  S  *  S  P  W  S  S  S  *  A  W  F  R  C  F  C  *   : S  Y  *  G  D  G  *  N  G  I  G  R  H  S  V  C  *  F  Q  I  C  A  *  E  I  Y  W  H  Y  *  :  A  T  R  C  Q  S  N  *  D  *  Q  S  R  H  A  F  V  L  P  T  G  *  Y  Y  S  C  I  G   : A  I  T  W  R  C  K  S  I  L  S  V  N  R  K  K  *  A  G  C  C  I  C  *  K  C  S  W :   W  Y  H  G  S  N  *  L  D  R  N  A  V  P  S  N  W  S  S  R  T  A  K  G  G  Q  S  *  S  L  S  R  S  N  Q  I  M  L  L  L  T  A  T  T  G  G  G  G  C  R  R  Q  L  P  S  F  S  L  L  L  Y  Y  T  F  K  S  L  I  D  L  L  L  Y  F  V  V  R  Y  T  F  C  *  N  V  E  D  F  L  L  S  A  H  Q  G  Q  V  W  G  Y  D  S  V  G  Q  A  Q  *  S  N  V  Y  F  V  L  S  T  S  I  G  P  F  F  N  L  L  H  I  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198L24.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127868" stop="127614"/>
                    <exon start="126706" stop="126632"/>
                    <exon start="125342" stop="125254"/>
                    <exon start="123566" stop="123482"/>
                    <exon start="122899" stop="122818"/>
                    <exon start="121799" stop="121708"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIEYCKRPEQSFVFERTCLSSRCWSMTMAMEAETQELVTPGQVLGKASQLKAGKGAYVSTENGTVYASLTGFRSLIPPHSDAVDQRSTVEVTGHKAHGAVPKPGSVVFARVTKVMARTASADIVCVDSKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGDIIRALVLSLGDARAYYLSTAKNELGVVSAESAAGGTMVPISWTEMQCPLTGQVEPRKVAKVEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 53 chains have been computed
$ 
$ memory statistics:
$ 6072 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 7528 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3764 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 17:59:36
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