<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 14:57:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339744" ref_strand="+" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttttttttttttttttttcaatcgttttcactaatcttcaaaagcaaaagtaaaacacgattacaccaaacgtaagaaagagttatgaatcttaccgttaagcaatagtcctctattgcttaacaagcctaagtagaaaacaatctacccactaagctatcccacctggacaacctagacttttaacacaacacaccaaatcctttatagattcaggaatggtttacagtttaagaacaagagaatatattcctaaacaactagacgaaaagctcaagatattgctgttgttcttggaataattctgcctttactttgtagagcctttgcaagagttcttgaaaagtttttatcaagttgcaaaaactgaagaaaagtgtttaggaaagtgccttttatatgggcaagtcactttcctaaacttctttgccattggttggaagggtcactttctgacgccatcgggaagtgtgcacctactttctgcaccatctccagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="107085" stop="3621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13301" g_stop="12797" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U339744" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13301" e_stop="12797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGTCTCATAGGATTTTCAATTGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAAACCTCTATTGCTCAACAAGCCAAAGTAGAAAAATAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTGAAAACAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTATTAGCCTTTGCAAGAGTTCTTGAAAAGTGTTTATCAAGTTGCAAAAACTAGAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGTCACACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTTTGCACCATCTCCAGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTCAATCGTTTTCACTAATCTTCAAAAGCAAAAGTAAAACACGATTACACCAAACGTAAGAAAGAGTTATGAATCTTACCGTTAAGCAATAGTCCTCTATTGCTTAACAAGCCTAAGTAG-AAAACAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTTAACACAACACACCAAATCCTTTATAGATTCAGGAATGGTTTACAGTTTAAGAACAAGAGAATATATTCCTAAACAACTAGACGAAAAGCTCAAGATATTGCTGTTGTTCTTGGAATAATTCTGCCTTTACTTTGTA-GAGCCTTTGCAAGAGTTCTTGAAAAGTTTTTATCAAGTTGCAAAAACTGAAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGT--CACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTCTGCACCATCTCCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324767" ref_strand="+" ref_description="SGN-U324767        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="18584" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18884" g_stop="19123" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19124" i_stop="21191" i_length="2068">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.882" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21192" g_stop="21215" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="264" r_length="24" r_score="0.542"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U324767" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18884" e_stop="19123"/>
          <exon e_start="21192" e_stop="21215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTAAAATCTTGGTGTCATTATTTCTCTTTTATTCTCGTTAATTAATCGTATTGTTGTGTTCCGCATTTGTTGCCTTTATTACCGCAAATATTATTTCTGTTACGGATTTATTCCCAACAACTAGTCCCTAAAGAGAATCAGTGACCAACTCGATAATCTGTCCCTAAAGGTCTTTAGCGACTAAAGCTACTCATTCTTATTTAATAGGATTGTTTTGTACCTGTTGGTGGTCTTTGCACGCCCTCCAAATATTTCACTTTTCCTTTCTCTTTCTCTTCTCTTCTAAAATAATTATCTCTTAAAATTGATAAACCCTAGTATTATTTTGATATGGGTTAAGTAGTGCATAGTTTTAAATAAATTATCATTTTAACCCATTAACTATCGATTAATTACTCATGTTACATTAATATTTAAAATTTTCAAAAATGACTTTTCGGGTCATTACAACCTCCTTAGCTATAAATATTGTAACAAATGAAAGAATTAGATAAATTTTCAAAGTTGAGATGCATATTAAAAAAGCTCTTTGATAATCATTAGTACTGCATGAACATATATTAAAAAAATTAGTATTTTCTGAACAAATCCTACAATAAACGTGCAACAAGATCATAATAAAACTGAAAATAAGAGAACAATGTAAACTTTTATACACCATCGCGTTAATTACATTGATGTGAATACAAATAAACAATAAATTAAACCCACGAACAGTTATTAAACATTAGTGTTAGGCAATCTTGGGAACAAGGCCAGGGTAAATATTATCATCATGATTGATGTAACTATAACCTATCAATATAAATAAATCACCGTACTTTTCAGATATTATTTGACCTAAGTATATTTTATCGCACAAAGCTAGTTGTTGATCGTCTTCTTTAAAATTTCAATCTTCCCAGAAAAAGCAACAAAAACATAAGAAGGATAGTTGAGAAATTGAAGTAATTTCTTGAGGAAGTCATAATATGTGTGAAACTAAATAGATTAATTAATGTTGTACTAAGTATTTATAAGAAAAATAATTAGTACGTGGGGCTGCTCCACGTCCCTAATATTTGGGTTGGGACGTGAGCAGTAATTTACTTCATTTCCACAAATTGCCTTTTTTATTTATTTAAATAACAAAAATTCCATCTTTAAATTTTTATTATTATCATTATTCCCAGTTAGTTTTATAAATTTCTAAAATTTCTTATTTTTACGTCGCAGATTAATATATCAACGCATCAAATTAATGTATCATGTATATCAGATTAATGTATCTCACGCATCACATTAGTGTATCATATATAAGACTATCTCCAACTCACCTCTATTTTGCTTTCCATTATCTATATTTGGAGAGTAAAATAGAGAACGGACACTCCAACTCATCTCTATATCATTATCTATTATTCAAATATAGAGATTGTGAATAGTAATTCTCCAACTATTCACACTCTCTATTTTATTTTTTGACTTTTTTATTATTTTTTCAATTACTTTCTAATTAATTTATTTTACATATAATGCCACTTAAAAATCTAATATCCATACTTCTTTTTAAATGTAATATATATTTTTAAAAATATATTATTTAATATATTATACTTTCATCCGAATAATAGTATTTTAATTTTTTTTTAATTTTCGCCAATGATATAATTTAATTTTATAATTAATTTTCACTATAAAGAATAAACACAATAAAAATGATAAGCTGAAAATTTTAATTTAAAAATAAAATATATAATATAATAATTTAAATATAATATAATAATACAATGCATTATATTATAATTTAAATACAAAATAAAATACTATACATAACATAATAATTAATTCTTGTATTTACAATCACAAAGGAGTGTTTCTTCGAAAAAGGTATTTTTTGTGTGCGTTTTTATGGGTTTCATCTTCTTGATTATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATTCTAATTGTCAGTTTTTCTGTGTCTTCTTAGTAATTTAATTTTATAATTTCTTTTAATATGTGCGTTTAAATTGTTGTCTTGTGTTACTATTAAGCTTCACAAAGAAACGAAATCGAAG</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341081" ref_strand="+" ref_description="SGN-U341081        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 5e-24, score=114)">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="33100" stop="34178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33373" g_stop="33878" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U341081" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33373" e_stop="33878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTTTTAATTTGAATTAAAACTTGATTTAAAAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTATGGATGGAGTTGAGGTCCAGTTGCTGACGCTGATCTTTGCTTCCTTGATTCCACTAGGGCCCTCTTTCTCCTCCTCGTTGATCATGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGTGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATACTACCTCCCATGAAACCTGCTGATCGAAATGATTGATGCAATGGCGGTATGGGTTTCTTCAGTGGATAGTAGTACCCATCCCTAGGTGGTTTCCAATTGAGCCATTCTTCGGTAGTGTACTTATATCCCAAACCAAAAGTGGTGGAATGTCGAACAGACTATACATGTTCGACTATCCCTTGCAATTCAGCCCCTAAACCTTTCCCAAGATCGAAACTGAACCAGACCATCATATCTATAATTTTTTCGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTT-ATTTGAATTAAAACTTGA--T-AGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345730" ref_strand="+" ref_description="SGN-U345730        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|53689715|gb|AAU89730.1| putative polyprotein [Solanum tuberosum] (evalue: 2e-42, score=175)">
      <seq>aaaaacacacaccactactggcatttttgaactattacatgttgacatctggggtccatatcaaacaacaactcatgataacttcaagtatttcattaccttagtagatgactttagtaaatctacctggacacaacttctaagctgtaaaagcaatgctttccatgtccttaaagcctttatactcatggttgagaaccagttcagcaccactgttaaaaccatcagatcagataatggtttggaattcactagcaatgaaaccactctattttttcaatccaaagggatcatccatcagaaatcctgcccctatactcctcaacaaaatggtgtggtcgaaagaaagcacaaatttattcttgaaacagcaagggctctactttttcagtctaaactcccagtgaaatattggagtgaatgtaacttgcttccacatatcttataaatagactaccttcttttcctctccacaataaaactccatatgaaattttatataaacacaaacctatctactctcacctaaagagttttggatgtttatgttatcctactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="44426" stop="43266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44126" g_stop="43566" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U345730" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44126" e_stop="43566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTCACACCACTACTGTCATTTTTGAACTATTACATGTTGATATTTGGGGTCCATATCAAACACTAACTCATGACAACTTCAAATACTTCATTACCTTAGTAGATGATTTTAGTAAATCTACCTGGACACATCTTCTAAGCTGTAAAAGCAATGTTTTTCATATACTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAACACCACTGTTAAAACCATCAGATCAGATAATGGTTTAGAATTCACTAGTAGTGAAACCACTTTGTTCTTCCAATCAAAAGGGATCATTCATCAGAAATCTTGTCCTTATACTCCTCAACAAAATGGTGTGGTCAAAAGAAAGCACAAATATATTCTTGAAACAGCAAGGGCTCTTCTTTTCCAGTCTAAACTCCCAGTGAAATATTGGGGTGAACGTATACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCATAATAAAACTCCCTATGATATCTTATATAAACACAAACCTACCTACTCACACTTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</genome_strand>
        <mrna_strand>AAAAACACACACCACTACTGGCATTTTTGAACTATTACATGTTGACATCTGGGGTCCATATCAAACAACAACTCATGATAACTTCAAGTATTTCATTACCTTAGTAGATGACTTTAGTAAATCTACCTGGACACAACTTCTAAGCTGTAAAAGCAATGCTTTCCATGTCCTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAGCACCACTGTTAAAACCATCAGATCAGATAATGGTTTGGAATTCACTAGCAATGAAACCACTCTATTTTTTCAATCCAAAGGGATCATCCATCAGAAATCCTGCCCCTATACTCCTCAACAAAATGGTGTGGTCGAAAGAAAGCACAAATTTATTCTTGAAACAGCAAGGGCTCTACTTTTTCAGTCTAAACTCCCAGTGAAATATTGGAGTGAATGTA-ACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCACAATAAAACTCCATATGAAATTTTATATAAACACAAACCTATCTACTCTCACCTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344877" ref_strand="+" ref_description="SGN-U344877        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-36, score=149) genbank/nr: retrotransposon(evalue: 5e-50, score=201)">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="49388" stop="48488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49088" g_stop="48788" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U344877" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49088" e_stop="48788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTAATAAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCACTTCCCTCAACATGTTTGCAAACTCCAGAAGTGTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTAGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346798" ref_strand="+" ref_description="SGN-U346798        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 1e-36, score=149) genbank/nr: gi|37530894|ref|NP_919749.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)] gi|18642681|gb|AAK02020.2| Putative gag-pol polyprotein [Oryza sativa] gi|31430072|gb|AAP52036.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)](evalue: 3e-43, score=178)">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="49813" stop="48729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49513" g_stop="49029" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U346798" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49513" e_stop="49029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CCACAATACACCCGTAACCACTACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTGTGGGTCCTTCCTGGCCATCCCTAAATCACCACCACCCGTGCCACCCCCCACTACTCATCCCATGTTAACCCGTGGCAAAGCCAGTATCTTTAAACCCAAAACCTTTCAGGCTATCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTTTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGGTCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325790" ref_strand="+" ref_description="SGN-U325790        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G28230.1 | Symbol: None | purine permease (PUP1), identical to purine permease GI:7620007 from (Arabidopsis thaliana) | chr1:9862060-9864593 REVERSE | Aliases: F3H9.22, F3H9_22 (evalue: 1e-94, score=343) genbank/nr: gi|15217873|ref|NP_174144.1| purine permease [Arabidopsis thaliana] gi|25350215|pir||D86408 purine permease [imported] - Arabidopsis thaliana gi|9795614|gb|AAF98432.1| purine permease [Arabidopsis thaliana] gi|26450405|dbj|BAC42317.1| putative purine permease [Arabidopsis thaliana] gi|28973199|gb|AAO63924.1| putative purine permease [Arabidopsis thaliana](evalue: 1e-92, score=343)">
      <seq>atcggccgaattaccaaaaatcgaaaatgaagaagcttatcttcctaattttcaacataattatgctttccatcggcaattgcggtggccctttaatctctcgactctatttcattcatggcggccaacgaatttggatacccagcgtattacaaactgttggttgtccagttattctcatccctttagccattgcctattttcaacgccggaaaattcaaggacccgaggctaaaatcgtctttatcacacggcaagagttcatcgcatctgccggagtcggaatcatcgtcggactcgacggttacttaaactcatggggacccgcaaaattacccgtttcaacttcgactctaatcaacgcgactcagcttgcgttcactgcgctttttgctgtgcttatagtcaaacagaaattgactgcgtattcgacgaattcagtcgttttgcttatcgccggagctgcgactttagccctccgggcgaacggtgaccggccggccggcgagtcggcgaaggattatatgttggggtttgtgatgacgtttgttggtgcggtgttatatggattgatgttgccgttaattgagttgatctatatgaagtcgaagcaagctgttacttacattactgtattggagattcagatggttctgggaatttctgctactgttttttgcactattggaatgattatcaacaaggatttccaggcgattccaagggaagcaagtcaatatacaattggagaatctaaatattatatggtactcgtattgtgcgctataatttggcaattcgcgctcatgggtttggttggagttattttttattcttcatctttactctctggaattataggcgcttttttacttcctgttactgaagttttggccgtaattctgtttcacgaaaaatttcaagcggaaaaaggagttgctatttttctagctctatggggatttgtttcatatttttatggtgaatatgacacaagggaagaaggagaagaaaatgaacatgaagaaaaatgagagtcaaatatctcaacaattaaatatgggccaaacaggcgcaggacatgttgtgtagtaaatttaacgtgattggccaaatattttattttattgaacttgtatgaaaattaattaatcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="105250" stop="158964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105555" g_stop="106255" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="713" r_length="701" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106256" i_stop="107734" i_length="1479">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107735" g_stop="108193" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="1173" r_length="460" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U325790" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>1160</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105555" e_stop="106255"/>
          <exon e_start="107735" e_stop="108193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAGGTACATATTATACACTTCTTCACTCAATTTCTGCAGCAAATCCAATTTCAGATAAACATAATTTTGAAACTTACAACCATCTTTCAATTAATTAAAATTTTAATTCTATACTATTACATTTAAATTAACAATTTTAAATAAATTTTGAAATAAATATCTAACAATTCGATCAAATCCGCATTGGGGTCTATTATGTCTATCTACTGAGTGTGATCCATCCGCTAGAATAAGTACACCAATTATAATCTTCCACCTGTCTTGTCTTTTGAATATTTACACGGTGGGTCCTTCGTCAATTAATCGTTTTAAAAATGCAGGTTTCAAAAATATCAATTTATTTATTGTAACAGAAAAAGAATATTTGTTTCTATTTTTTTTAAAAAATGAAAATGTTTTAACTACAATAATCAATTTCTTTATTTCACACACCTACAAACTCGAGTATGATTACCACAAATTATAATTTTTATAGATAAATTTAAATTAATCAAAATTTAATACGAATATATAAAAAAAAAAAAAAAAAAGAAGTAACTGAGTAATTGTTTAGCCCATGTTCTGATTGGCCAGGCAGGCTCCCCATTTCTAGCTGTCATATGAGTTTTTTCGTCCGTACATTAAATAAGGATAGAGTTTCCTACATTTTCTTTTTTCAAAGCGGAGCATATGACAAGCAAATATAATCTTTTTCATATTAATATGATAAAAGTATAATTTTTAAAAATTATATAAATTAATTCCTAAAAAATAAAATTTGATAAGATAGTGCATAATAATAAACTTATTTACCTCTACTCTTGTACCTACTTATGTATTGTAGAAAACAAATGTTACACTTAAAAGGAAAAACTATTTTTGATAAAGCTAATATTTTTACCATTGTTGTTAACTCTTTTCTAATGTCTAAACTTGTTTCTTTCCTTTCATATCAATTATTTTCCTCCTACCTTCTCTTTTTTTTTTTTTTTTTACTTTGGGAAACTAATTAAAATGGAAGAAAATTAATTAGATTTGCAAACTCTAATTTCTAAAGCTAATCTTTTTGTTAAATGTAGTTTCATTTGCATTATTAACATCATATTTAGAATTTTTACACCATACGTGCACTACTAAAATTGAAGAAAGAAGATTTTATTTTTTCTAAGTAGGTATTGGTCGTCATTTCTTTAGGTAAAATTACTCTAATAGTCGGTAGATAATAGTAAATTAAATTTAAAAAATTTATATATAAAATACCCATTCACTAAAGTAATTATAAAATACGCTGTAAATCCGCTCTTGTAAATGCAATGCAAGTGCGCGCATCTAATAATAAATAAGAGAACAAATTCATATGGTTTGTGCTTTCTGTTCTGACAAAGAAAAAGAACGAATTTTCCCTCTATTCTATACTTTTTAAGAAATAATTCTATGCTTTCACGTGAGTTTATTCAAGTTGGATTAGAAAGAATAAATAACAGTAACGACTTATTTTGACAGGCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTTGTATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGA-ACAAGGGAAGAAGGAGAAGAAAATGAAGATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAGATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGTACTTGTATGAAAATTAATTAATCATTAGGTGCAAAAAAAAAA</genome_strand>
        <mrna_strand>ACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGGAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGAATCATCGTCGGACTCGACGGTTACTTAAACTCATGGGGACCCGCAAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGGGCGAACGGTGACCGGCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTTTTTTGCACTATTGGAATGATTATCAACAAGGATTTCCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTCGTATTGTGCGCTATAATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGACACAAGGGAAGAAGGAGAAGAAAATGAACATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAAATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGAACTTGTATGAAAATTAATTAATCAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329009" ref_strand="+" ref_description="SGN-U329009        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=55.1)">
      <seq>cttgtaactcaagtgagggcattaatgtggtggaatgttgggctgatccagaaggctggactttgtgggctattctctggcctgccctatccaagcatagagttgggctatgtagcccaagcgaaggcataggctgcttggctcctagagtggggtggatcgcgtgaggctggtttcacagagcaacgaacagctcccgttctatccagtggaaggatcacgggtcagtgttcatgaaatgaagtccaactaaaacctaatgggctgcttcaactaaaccaccattttttgaccttaatgtatataatatttttatgggcaactttcacatataacaaacaaataattcacatttgtatgctatagtaaagcttgtataattgcgctccatagcaaacataaaaactgtataattcgaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="113272" stop="112243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112972" g_stop="112558" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="436"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U329009" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112972" e_stop="112558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAATTGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGCTAGCCCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTTAGTGTTC-----ATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGTTTGTATAATTGCGCTCCATAGCAAACAT-AAAACTGTATAATTC</genome_strand>
        <mrna_strand>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAA-TGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGC----CCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTCAGTGTTCATGAAATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGCTTGTATAATTGCGCTCCATAGCAAACATAAAAACTGTATAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316323" ref_strand="+" ref_description="SGN-U316323        Tomato 200607 #1 [29 ESTs aligned] arabidopsis/peptide: | Symbol: None | 40S ribosomal protein S21 (RPS21C), ribosomal protein S21, Zea mays, PIR:T03945 | chr5:9807323-9808480 REVERSE | Aliases: T1G16.30, T1G16_30(evalue: 7e-35, score=143) genbank/nr: gi|15241026|ref|NP_198122.1| ribosomal protein S21 - like [Arabidopsis thaliana](evalue: 4e-33, score=143)">
      <seq>ggcgattggcggccaatcggccgaattggtcttctccaagcacatccattgttgtcgtcagtcagtcttgcaggtgttctccacttctaaatctatttgtgtaaagccactgtcaagatgcagaacgacgaaggacaaaacatggacctttacatccctaggaagtgctctgccactaacaggctgataacttccaaggatcatgcatctgttcagctcaatgttggccatttggatgagtctggccgatacactggccagttcaccacttatgctctctgtggatttattcgcgcccagggagacgccgatagtgctcttgataggctctggcaaaagaaaaaggctgaagttggacaacaatgagagttttctatttggtgttaccattcttgaaaaatgagagttttcaatttagtattgtattaccagcagttctgtgtttagtggctgttctgttttatgtttaaagttcattatcagacaaatggaacttgcttgttactattttagtgcattaacttgattttctaccgttaaaaaacttttggagataacaaatatgtgctgttgttttaatgaattggcctggttcatgagccatttcttacgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="120482" stop="117963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120179" g_stop="120135" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="73" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746">
            <donor d_prob="0.897" d_score="0.98"/>
            <acceptor a_prob="0.870" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119388" g_stop="119295" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="167" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="119210" g_stop="119078" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="300" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118582" g_stop="118263" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="616" r_length="316" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U316323" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120179" e_stop="120135"/>
          <exon e_start="119388" e_stop="119295"/>
          <exon e_start="119210" e_stop="119078"/>
          <exon e_start="118582" e_stop="118263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAGGTAAAAGCACAGCTCGTGTTTCTTCTCCTTTGTATGATACCAATTCTGTAGTGTATATCGAATTTGTCTCTTTCTTTTGGATATATAATTCATTATTCATGTTCGTGTCATCAAGCTTTGTGCTGGAATTGAAAATTGTATTTCCTGTATAGCATAATTGATTTATCACCATAGAAGAGGCTGTAAATTAATGCCGTCTTTTGTTTGAAGCATTAATTACTTTTGTTAGTTACTATTTGTATCCTTTTCTGATTGTGTTACGAGTAGTTTGCTTTGCAATGTTTATCTTCACTTTGCTGCATTTCTCTTCAACCATCCTGGATGGGCACAATTGGAATTTCTTTTACGAATTCGAAATTTTGTGTGTTAAGATAAATGACAGAATTCTGATTTTATCCCAATATGTGATCATTAAACCCTACATGTTTCAATTATTAAGATTTGAAAAAACAATGTTATCTTTTTGTTATCAAGCCATCTCTGTATTCACACTTCCACAACAGGTACTTTATCTCCAAATCTCAATGGCTTGAACTTTTGAAGTATATTAGTATTTCATTTGATTCAAATTTGTATAATGTGAAGCTGGATGGTCGAAATTTAAATAGTTTTACTACTTTGCTTCCGAATACTTCTATATTATAATCTATTGTGGAAGTGTGAGTCGAGTAGGTTTACTTACCTATGAAAAAAGAGACTCTTTGGTTAGTGAGTTGCACTTTAACTTGCTTTCTATTTAAATCCAGGTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTGGTAAGTTTTTCTTACTTCCCAACACTTTTGACTAGATTCAGATGTTAGGTTGTCCTAGATTATTAATGTACATTTTGGATGCAGCTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAGGTAACTTCCTTGTTACCTTTGATATCATGGTAGAGGAATTTGACCTTCGGATTGTTCTGAGTCATGCCAAACTGTTTGTTTCTGGGTTTTTTGAATCACTTGTTTTCTAAGAGTGAACTATTCATTGTGCCTCCTGGGCCTTGAAATGCATAACATATCTTTGTATGTGTGGTGAAATGATTGCTATTTTCATGGCTCACTAACCTGAGATGTGACTACTTCTCATGCAAATACATCTTGCACAACTGGAGGTGTACCTTCGGCTTGTTTTCTTGTCCCATTCTTCTTTCTGCAAAACTGAAACTGAAAATTGATTAGTATTATTCCTTGTCAAAAAACTTTACAGAAAGAGAGACGCTTCTTTTTTAGATCTATTATATGGGTCTTCTTTGCTGGAATATTATTTTAGGATCTTGTTATGGTGATTTATGTAGTGTGCTTTTGACATTTATCATTTGTCTGTTACTGAAAATGACTTGAAAACACTTTTTGCAGGGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGC</genome_strand>
        <mrna_strand>GTCTTCTCCAAGCACATCCATTGTTGTCGTCAGTCAGTCTTGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG....................................................................................CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCA-TTAACTTGATTTTCTACCGTT-AAA-A-AACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341248" ref_strand="+" ref_description="SGN-U341248        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ccatgaaagtgacagaatgtttgagttttgcagtcatcatttcaatgacattagagtaattctcttggtaaagagaagctcgtcgagtttgggaccttgctgataaggagaaatcaaaaggggatgaatactggatatggaaaaggatgacaactagaaacaaggtgaaaaaagagagagtgatgaatttgatggttaacattttggtcttatttcgagtgcatgacttggattgatgttccattttcattgagttaagaagcatcaaaatactatttctctggttttaaggagcaaattgaatgtcaagattgaaagttaaaatctctatatattatataaaaccagctgacataaaacatagatagtaatgaggcctgagggattccttgtcaatagtttcaatgtttacagatgtatgcttagtgaatattttagttgatagaagtgtgtaaggtcagagatggagccatgttttgcgttaaactttgttgtttttggtacttcttttctagttttgtcaaccttccattaaattcttcacagccaaaaaagatattttatacacttgggctgcatttaccttccctggcaccttgtcgagatctccttggagtatctcaaaatattacattcattaaaaaaagagagtataaaacacaataatacgacataatacaatataatatattatgaaataatatccctctaaacaaagtgttacagggcttttggtaaagtatataagcaaaattattgcatgtattagctctatgaattaatagtaccttatttgacatactttttcatgctatgtataaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="122191" stop="120767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121893" g_stop="121067" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U341248" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121893" e_stop="121067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGAAAGTGACAGAATGTTTGAGTTTTGCAGTCATCATTTCAATGACATTAGAGTAATTCTCTTGGTAAAGAGAAGCTCGTCGAGTTTGGGACCTTGCCGATAAGGAGAAATCAAAAGGGGATGAATACTGGATATGGAAAAGGATGACAACTAGAAACAAGGTGAAAAAAGAGATGGTGATGAATTTGGTGGTTAACATTTTGGTCTTATTTCGAGTGCATGACTTGGATTGATGTTCCATTTTCATCGAGTTAATAAGCATCAAAATACTATTTCTCTGGTTTTTAGGAGCAAATTGAATGTCAAGATTGAAAGTTAAAATCTTTATATATTATATAAAAACCAGCTGACATAAAACATAGGTAGTAATGAGGCCTGAGGGATTCCTTGTCAATAGTTTCCATGTTTACAGATGTATGCTTAGTGAATATTTTAGTTGATAGAAGTGTGTAAGGTCAGAGATGGAGCCATGTTTTGCGTTAAACTTTGTTGTTTTTGGTACTTTTTTCCTAGTTTTGTCAACCTTCCATTAAATTCTTCACAGCCAAAAAAGATATTTTATACACTTGGGCTGCATTTACCTTCCCTGGCACCTTGTCGAGATCTCCTTGGAGTATCTCAAAATATTACATTCATTTAAAAAAAAAAGTACAATACACAATAATACGACATAATACAATATAATATATTACGAAATAATATACCTCCAAACAAAGTGTTACAGGGCGTTTGGTAAATTATATAAGTAAAATTATTGCATACATTAACTCTATGTATTAGTAGTACCTTATTTGGCATACTTTTTCATGCTATATATAAATTAT</genome_strand>
        <mrna_strand>CCATGAAAGTGACAGAATGTTTGAGTTTTGCAGTCATCATTTCAATGACATTAGAGTAATTCTCTTGGTAAAGAGAAGCTCGTCGAGTTTGGGACCTTGCTGATAAGGAGAAATCAAAAGGGGATGAATACTGGATATGGAAAAGGATGACAACTAGAAACAAGGTGAAAAAAGAGAGAGTGATGAATTTGATGGTTAACATTTTGGTCTTATTTCGAGTGCATGACTTGGATTGATGTTCCATTTTCATTGAGTTAAGAAGCATCAAAATACTATTTCTCTGGTTTTAAGGAGCAAATTGAATGTCAAGATTGAAAGTTAAAATCTCTATATATTATAT-AAAACCAGCTGACATAAAACATAGATAGTAATGAGGCCTGAGGGATTCCTTGTCAATAGTTTCAATGTTTACAGATGTATGCTTAGTGAATATTTTAGTTGATAGAAGTGTGTAAGGTCAGAGATGGAGCCATGTTTTGCGTTAAACTTTGTTGTTTTTGGTACTTCTTTTCTAGTTTTGTCAACCTTCCATTAAATTCTTCACAGCCAAAAAAGATATTTTATACACTTGGGCTGCATTTACCTTCCCTGGCACCTTGTCGAGATCTCCTTGGAGTATCTCAAAATATTACATTCATTAAAAAAAGAGAGTATAAAACACAATAATACGACATAATACAATATAATATATTATGAAATAATATCCCTCTAAACAAAGTGTTACAGGGCTTTTGGTAAAGTATATAAGCAAAATTATTGCATGTATTAGCTCTATGAATTAATAGTACCTTATTTGACATACTTTTTCATGCTATGTATAAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337466" ref_strand="+" ref_description="SGN-U337466        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:8376396-8378331 FORWARD | Aliases: DL3340W, FCAALL.126(evalue: 6e-46, score=181) genbank/nr: gi|18414258|ref|NP_567434.1| expressed protein [Arabidopsis thaliana] gi|18389246|gb|AAL67066.1| unknown protein [Arabidopsis thaliana] gi|20259643|gb|AAM14339.1| unknown protein [Arabidopsis thaliana] gi|21554084|gb|AAM63165.1| unknown [Arabidopsis thaliana] gi|26452326|dbj|BAC43249.1| unknown protein [Arabidopsis thaliana](evalue: 5e-44, score=181)">
      <seq>cagaaaattcgagttctcgacgatctttggcagcaagtttcactccctgtacgatagtttcaagtttttcttagggtttcgaggtttcttcagtactctctttcaatggcttctagctctcatagaggcggtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaaggatcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagataagtgcaactcactgtctatgttggtttgctgtttcctggtacaagttctgatgaagacacaatctattcaagccatcaaactgattctaagcagtggcagatttttagtgatttgggaagcaaggggggcaactgtaggaactccggatattagtcttatgtaaagcttcctaatctgtagaaaaccgtgggttgctactatttaacctttttcttttcattttattgttctttgtaatacttgctatatgacaatgaccagtgggtgcttaccttagaaaaatgtgattatggtgcaatggagtatgttatataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131291" stop="127694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130991" g_stop="130837" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.858"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="288" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="345" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="127993" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="823" r_length="478" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U337466" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130991" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="127993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAA-AGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTA-------G-GGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGTTATATAAT</genome_strand>
        <mrna_strand>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAAGTTTCACTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCGAGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCGGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGATCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTGTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACTGATTCTAAGCAGTGGCAGATTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGTTATATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321871" ref_strand="+" ref_description="SGN-U321871        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:8376396-8378331 FORWARD | Aliases: DL3340W, FCAALL.126(evalue: 8e-46, score=180) genbank/nr: gi|18414258|ref|NP_567434.1| expressed protein [Arabidopsis thaliana] gi|18389246|gb|AAL67066.1| unknown protein [Arabidopsis thaliana] gi|20259643|gb|AAM14339.1| unknown protein [Arabidopsis thaliana] gi|21554084|gb|AAM63165.1| unknown [Arabidopsis thaliana] gi|26452326|dbj|BAC43249.1| unknown protein [Arabidopsis thaliana](evalue: 5e-44, score=180)">
      <seq>aaaattcgagttctcgacgatctttggcagcaagtttcactccctgtacgatagtttcaagtttttcttagggtttcgaggtttcttcagtactctctttcaatggcttctagctctcatagaggcagtgatttctacggggctgcttcatatagatccagagatggattgagcacgaggcaagtaggtagtgcagatgaaatacagttgcggattgatccgatgcacggagatttagatgatgagatcacaggtcttcgcaagcaagtaaaacagctcagaaatgtagcacaagaaattgagtcggaagcaaagtatcagaatgattttattagccaactgcaaatgacattgatcaaagctcaggcaggagtaaagaacaacatgagacggttgaacaggagtatcatccaggaaggatcaaaccatgtgatgcatgtggttctttttgctctattttgcttctttataatatattggttggccaagttttcacggagataagtgcaactcactgtctatgttggtttgctgtttcctggtacaagttctgatgaagacacaatctattcaagccatcaaactgattctaagcagtggcagatttttagtgatttgggaagcaaggggggcaactgtaggaactccggatattagtcttatgtaaagcttcctaatctgtagaaaaccgtgggttgctactatttaacctttttcttttcattttattgttctttgtaatacttgctatatgacaatgaccagtgggtgcttaccttagaaaaatgtgattatggtgcaatggagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="131288" stop="127702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130988" g_stop="130837" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="130733" g_stop="130610" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="285" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129155" g_stop="129099" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="342" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="128470" g_stop="128002" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="811" r_length="469" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U321871" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130988" e_stop="130837"/>
          <exon e_start="130733" e_stop="130610"/>
          <exon e_start="129155" e_stop="129099"/>
          <exon e_start="128470" e_stop="128002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCGAGTTCTCGACGATCTTTGGCAGCAA-AGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTA-------G-GGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAGGTATTTACGGAAATAAAGTTTTTTTTTAATCATTTTCTAAATTACACTTTCTTTTGGTTTATTTTTGAGGAAATTAAGTTGTTTAATGTGTTTGATTAATCAGAGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAATGTATGTTTCCCCAACACTTTGTCTTTGTTTCCGATTTTGGTTTTGTAGGAGAATAGCTATTGCATAACTGGTGGCGTTTGTACGATTAATTTACATTTGAAATTTGGTGATGTCTTATTCTGTTAGAATATAATATTCATTAGAAAACCAAAATGAAACTTGCTAGGCTTAGAGACACGTAAACACGCTTCTTTAATATAGTTGAAGTATCTCAGCGAGCAAATAGATAGCTGAAGTCTCTCTACGACCAAACAGAAATATTATGGTAGCTCTATCTTGGTGATTACAACTTTACGTGTTTCAAAAATGTTGATCTTCTATTCATGAATCTAGGATTTATATTTTTGATCAATGTCTCCCTTATATGAATTTTAGACATCAAGAATGGATCTGATACAAAATTCATTTTGGATATTAATAAACTACTTTAGAAATCCAAAAGACTTGAAACTATTTAATAAAATCCGTTGTTTCAAAATATATTGAGACATCATCTAACAATCTCCCGCTAGTTTCAATATATGAAAATAAGAGGCAGTTCTAGTAATATAAGTCAATGATGATGCCTTAACTTGATAATAAATTGCTATGTTTAGGCTTCAAGTGATTGTACAATGGTAAAGTGAGACAAGTCACATGAGAAGATTATTGGAGGATGGTTTAACATCTCTTCAATATGTGTGTTCTTGGTCTAACTTAGTAGATCCTTTTTACATTACCTATAATTATTTTGGTTAATTCTCTGTCTAAAAGATAGATGAAGAGTTGGTGGTTGAAACTTGTAAAAGAATGATAATAACGCGTATTGTAAATTAATTGTACTCAACGGATACTCTACCTAGTGAAATTATCTTAGGTTCAAACTTCATAGAGATAAATAATTGAAATTGCAGGTCTTGAGCCTAATAATAGTTTTTTTTATTTCCCGAAAATATATAATGGAAGTGCATATTTATATTTAATGCTACTTTAGCTTAGTTGAATCATGTAGTTAGTGTTTTAATGATCCAAATGTTGGCTGAAATTTCAAACAGGACTAAAGTTTTGTATTTCTAGTTGAACATTGCTTTGGGTGTAAATCCTGAAGATCTTTATATACCATATGCCCTTATTAGATGCATCTTTTCCAATCCCTCATTTGTTGGTCTTACTTGCTACTCCCTCTGTCCCAATTTATGGGATGACATTTGAAAGGGAGATTTTTGAAGCTTGTGGTCTAAATAAGGCATAGATATTTTTGTGACTATAAATCATCTTAGTAAGGATAAAATGGAAGTTTAAAGCTCATTGTTACTAATTATAGAAATGTGTCATTTTTTTAGGGATTGAATACGAAGGAAAGAGTGTCACATAAACTGGGGATGGGATAGAGGGAGTATATTATATTTGTCATGGTTTCAATTTGTATACCTATTTTCCCTTTTGCTTGTTCTTATAAATAATTTATATTGCAGGTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTGGTATGCCATGAACTCATTCTCCCTTTTTCCTTGTATGTATGACATCTTAGTCACTTCTCTATTTATTTCATGTATGCCTTAACAATTAAATTTTTGTATATTGGAGCTTTTTTGGTATTTATTCTCTTATTACTATTACTAGATAACAATTTAACATGAACCAAAATTATATTTAATTTTATAAATGAGGAAAAAGTTTTTAATTGGTTACCTTTATTTACAACCTTTATGCCCCCGCTTTCTCACTCTTTCTCCTTCTATAATCTAGGAATTACATTTGTTATTCCTATAACTCTCTTAGAACTGATAGTGTACTTGTAACCTTCCTTTCCCTTTCCTTACCATGCCAGCCTGCCTTAATGCCTTCGTTGTTTTATGCTCTCTCAATTTCTTTGAAAATATGTCCTTGTTAGATATTCCATCAACTGACTATGATAATTGATAAGCCCACTTTTTTTCTCCTTCTTTATTGAGGGTAATGTGTGCGGGTTATAAACATGTTGATTGGTCATTCTGTCTGGGATTCTCATCCTGTATGCTTAATTTATTGATTATGGAATCATTCTTACTTGTACGTTACATGGCTTCCCCATTTCCTTAAAAACTCACACTTATCCCTTTATCACAGCAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATG</genome_strand>
        <mrna_strand>AAAATTCGAGTTCTCGACGATCTTTGGCAGCAAGTTTCACTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCGAGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAG.......................................................................................................AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGATCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTGTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACTGATTCTAAGCAGTGGCAGATTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315178" ref_strand="+" ref_description="SGN-U315178        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile: PF03959 domain of unknown function (DUF341) | chr4:12612546-12614027 FORWARD | Aliases: T22A6.210, T22A6_210(evalue: 9e-84, score=306) genbank/nr: OSJNBa0086B14.2(evalue: 4e-85, score=317)">
      <seq>tcattttaatttctgcaaaaaatattgctaccatgggaagtgtaggtgattcgaaaactcatcagaggaaacccagatttttgtgccttcatggatttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaactgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggaaaatctgaagttgaaggcatctttgaccctccctattacgagtggtttcaattcaataaggaatttacagagtatgagaattttgataaatgtcttgaatacatagaagaatgtatgatcaaacatggacctttcgatggtcttcttggtttctctcagggggcaattctttccggagcattgtcggggttgcaggctaaggaagtgggacttacaaaggcatcaaaaattaaatatctgatcataattggaggtgctaaatttcggaataaatcagtggccgaaaaagcttattcaccagcaattgcatgcccttccgttcattttttaggtgagcaagattacctaaaacagtatgggatagaactgttggaatcatgtgttgatccagtggtgattcatcatcctaggggtcacactataccaagattcgatgagaaaggattagagagtgtgcttagtttcattgagaaggtgcaagaagagattaacaagtgatcaagtttgataattttttttcaaaaaaaaaaaatagtggtagtccctagtttgggacatgtagttaccacctttttttaatataaataaaatagctccgagtaattagtattttacaatgtaggaatgaaaaataccagaccatgctattgtatttaccgcagtttgccattcgattatattgatataaaaatcttttatcagttctaacttttagaaatttatagtttaaaatatgtttgcaaaaancatatattttcattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="135961" stop="139958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="136261" g_stop="136526" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136626" g_stop="136724" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="365" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="137022" g_stop="137063" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="407" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="137191" g_stop="137320" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="537" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="139128" g_stop="139229" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="639" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="139329" g_stop="139666" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="979" r_length="340" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U315178" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>977</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="136261" e_stop="136526"/>
          <exon e_start="136626" e_stop="136724"/>
          <exon e_start="137022" e_stop="137063"/>
          <exon e_start="137191" e_stop="137320"/>
          <exon e_start="139128" e_stop="139229"/>
          <exon e_start="139329" e_stop="139666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAGGTCGCTTCATTTTTTCAGTATTAAATCCTACTTGATTCGATCAGATAGCTCTTCCTTCGATTTCGATGAACAACTAATGGTTGTTGTTTTTCAATACAGGAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAGGTAATTTTAGTTTTTTTCTCTCTCTTTCTTCATTTTTGGGGTTGGTTATAAAATTTGGTCCAATGTTTTTTTGCATTTACTTTGGAAGTATCTGAATTCTTTTTTTTAAAAAAAAGGTCTGTTATTCACTCAAAAATATTTTTTTTCAAAGCAGAAAGACATAATTTAGACTACTATATACTATTACTAGTATTTTTTTTTTGGTCATATTTCAAATTTATGATATTGCATGTATTTTTATTACTAGAAAATAAATTTGCACAATTTGATTTTGAGTATCTCTGTTTTTTAATTCAGGGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAGGTAATAAATTAAGTTTTTGTTTTAGTTCTTTGTGTGAAAATGAAAATGTAAAAATTTGAATCGTAATTATTCTTGTTCAATTAAATTTTCCATAGTTATTGATGATAACTTGGTGTGATATTAACAGGAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAGGTATCTTTCTGTTCCTACAAAAAATTTTCAACACGTTGTATTGTTGTTCTTTGGCTATTTTACACCACTCGTAGTATATGATTATTTTTCTTTAAAACGTTTAGTTTATTTTGTTAACTACGACAAGTCAACTATTGATTCTGGCCAATTTGGGCCGACTCGATTAAATTGAATTTGTTAAGAAATTTCATGGGATGATGGAAATTAAGTAATCACCACGTCCACTTGACAAATCAAACAAATGATGATATATTTTTATGTACACGAATTTCTTAAAAATTTTCAAATTTTTAAGTAATTTACTTCATAATAAATAATAATTAATAGGAGTAATTAATAGCTGTCTTGGCAGCGATTTTTGTTATTGTTTCTTTTTTAAGTTTTTTTAAAACAAATTTGGTAGCGATTTTAGAAAATTTTAATTTTTTATTTGTGTATTTTGAAATTTTAATGAAATTTGTTTTTTTTTTAAATTATGAATTGAAAATTGCTGCATTTGCAGCGATTGTAGTTATTTATTATTTTATTATTTAAGTAAACCTCTGCAAAAGCAAAATTTAGTTTTTTTTTTTGAAAAAAAATTTATGTTGTATAATCGCTACAAATACAGTGACTTACTTTTTATTTTTATTTTTTTTTTGCAAATTTTAGTGGATTTTTTTAAAAAAAATTGAAACTTTTTTTAAAATTATTTTATTTTATAAATATTTACAATTGATAATTTTAAAAAAAATCCTTAAAATCGCTGCATTTAAAATACGCAATTAAATAAAATTAAAATCTTTATAAAATAAAATTTAGAACTAATTTTATAAAATAAAATTAAAAAAGAAGAAGTTTCAATTAAAAAAAATTTGTAAAAAAACAAACAAACTAAAATTTGCTGCATTTGCAGCGATTATACAACACAATTTTATAAAAAAATAACAACAAAAACTAGAATCGTTGCTTTTGTAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATAATAATAAATAACTAAAATCGCAAAAATATAGTGATATACTTAAAAAATAATAATAAATAACTAAAATCGCAAAAATATCACTGTTCGAGCAGCAATTTTACTTTAATGTCGTTAAAATAAATCGCTACGTCAGTAGCGATTTTATTGGTTATGTTGGAAATTTTTTTTATATACCTTTTGGAATTTTTGTCAATTATTTTTGCTCTTTAGACTCCAAACTCGTACTAATACATAGTATTTGTTTAATAAGGCATGTTGATAAACACAATATAAAGTTCCAACTTATTAGATCGAGTAATACGTCAATATTGGTTAGGAATATTTAGAGGATATGCCTTGATATAAAGGAATCCCTAGACAAAGAGGAGTTGTTTTGGTCGATATAAGAGCCTCAACCTAGACATCAAACTCCTAGCTCTTGAGCTTATTTACTGTTGAAAAGGGTACTGTTGGTATATTAATTTCGAAATATTTAATATTTGCTTATGAATATCAATTAATCTCAAGAATTAGTTATTCATAGGTAGTTAAATTGTGTGAGACATTCCAACCCCTAGGCCCAACCAATTAACTCCTAAATTCTGGTGTTATAACTAATTGCAGTTATGAGTTGTTTTAATTGACTTATTAATAATCTATAGCATAAGCTAGAAAAATCCGAACTTATGACTTCAACATGCCTATTTTTAGGTGTGGGTGGGCAGCTGCTAAACTTCAACATGCTATTATCCCCAAATGTATCAAAGTTTCTATTTTTTTTTTTAATTACGATATTAATTACTGGTTATTAATTAATCACTATAGGTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCGGTAAACCTCTTTTAACTATTTTATTAATTCAACTTCATTTAAATGTTAATTATATTCTGTGTTGTTAATTAATCTTCTTCTTCTTCTTCTTTTTTTCAGATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTC-AAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTTATAGTTTAAAATATGTTTGCAAAAA-CATATATTTTCATTTTCATTTTGGAA</genome_strand>
        <mrna_strand>TCATTTTAATTTCTGCAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG...................................................................................................GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG.........................................................................................................................................................................................................................................................................................................GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG...............................................................................................................................GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG...................................................................................................ATGAGAAAGGATTAGAGAGTGTGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTTATAGTTTAAAATATGTTTGCAAAAANCATATATTTTCATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315179" ref_strand="+" ref_description="SGN-U315179        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam profile: PF03959 domain of unknown function (DUF341) | chr4:12612546-12614027 FORWARD | Aliases: T22A6.210, T22A6_210(evalue: 4e-83, score=304) genbank/nr: OSJNBa0086B14.2(evalue: 9e-86, score=319)">
      <seq>gatactgtactatttacccaaaattttctccaaaatgtacgggaaaactatgaatatgacaaattcagccgccaccatggcaggtgaaggaactgccaacgccaatcagaggaaattacccagatttttgtgccttcatgggtttcgaacaagtgggaaaattttgaagaagcaaatatttgataaatggccaattgaagttgtggataaattagatctagtttttgttgatgcgccttttccatctcaaggcaaatctgaagttgaaggcatctttgaccctccttattatgaatggtaccagttcaataaggaattgaatgagtatgagaattttgataagtgtcttgattatatacaagagtgtatgattaagcacggacctttcgatggtcttcttggtttctcccagggggcaattctttctggagcattgcgtggattgcaggataagggagtgggacttactaaggttcgcaaaataaaatatctgatcataattggaggtgcgaaaatgcagattaaatcactggccgaaaaagcttattcaccagcaattacatgcccttccgttcactttttaggtgagaaagacttcctgaagccgtatgggatggaacttttggaatcatatgttgatccagtggtcattcatcatcctaagggccatactataccaagatttgatgagaaaggattagagagcatgcttagtttcatcgagaaggtgcaagaagagattagtacaagtgaacaagtttgatgacattacatttttatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="142031" stop="144029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="142331" g_stop="142643" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94">
            <donor d_prob="0.600" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142738" g_stop="142836" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="412" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143039" g_stop="143080" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="454" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143160" g_stop="143289" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="584" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143290" i_stop="143393" i_length="104">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="143394" g_stop="143495" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="686" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="143496" i_stop="143631" i_length="136">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="143632" g_stop="143729" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="784" r_length="98" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U315179" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="142331" e_stop="142643"/>
          <exon e_start="142738" e_stop="142836"/>
          <exon e_start="143039" e_stop="143080"/>
          <exon e_start="143160" e_stop="143289"/>
          <exon e_start="143394" e_stop="143495"/>
          <exon e_start="143632" e_stop="143729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACTGTACTATTTACCCAAAATTTTCTCCAAAATGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAGGTCGCGTTGTACGCCTAATTAATTCTTGCTAATTTTCAAATAAAAAAGGATAAAAATTATTTTATTTTATAACTGTTGTTGTTTTGAAATACAGGAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAGGTATGATTTAATTATTTTAGTTGGATGCTTGGATATAAATTTGAAAAAATAAATAAATTAGTATTGATTCAATTCGATATTTTTTTATTTTCTCTTGCTTTTCTTCTTGATTCTGAAACTTTTTTGAGTCGACTCTTTTCTCTTTCTTTGCACGATCTGATACTGAGTAGTGAGTATTCTCTGTTTTGTTGATACGATTCAGGGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAGGTACACACTAGCCCTTTTTAACGACAATCTTATTCCTCTTTTTACTTATCCATGGTTATTTTTGGTGTGATAATGGCAGGGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAGGTACTTTCTGTCCCTACAATTTATCTTCGTTACGAACAAGTACTTTACAGTTTAAAACTAAATACTTATGAAAATTCTACACTTACATTTACTGGATATTACAGGTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTGGTAAACCTCTTGACATTTTTATTAATTCACTCAATGTATTTTCTGTTGTGTTGCTCGGACTCTTTAAAATTGTCCGGTTTGAAGTAGCCTTTGTTGTTTAACAACAATGACAAATACCATCTTTTTTCTTTTCCAGATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGAAATTACATTTTTATATGA</genome_strand>
        <mrna_strand>GATACTGTACTATTTACCCAAAATTTTCTCCAAAATGTACGGGAAAACTATGAATATGACAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATCTTTGACCCTCCTTATTATGAATGGTACCAGTTCAATAAG..............................................................................................GAATTGAATGAGTATGAGAATTTTGATAAGTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG..........................................................................................................................................................................................................GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG...............................................................................GGAGTGGGACTTACTAAGGTTCGCAAAATAAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAG........................................................................................................GTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTG........................................................................................................................................ATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATCGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGACATTACATTTTTATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318973" ref_strand="+" ref_description="SGN-U318973        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: AT5G49980.1 | Symbol: None | transport inhibitor response protein, putative, E3 ubiquitin ligase SCF complex F-box subunit; similar to F-box containing protein TIR1 GI:13249030 from (Populus tremula x Populus tremuloides) | chr5:20351190-20353891 REVERSE | Aliases: K9P8.12, K9P8_12 (evalue: 1e-135, score=480) genbank/nr: gi|13249030|gb|AAK16647.1| F-box containing protein TIR1 [Populus tremula x Populus tremuloides](evalue: 2e-138, score=495)">
      <seq>catggtctgtctctctggtttcagggaaattgctcctgaatatctgcctgcaatctatccagtttgtggcaatctgacctctcttaatttaagctatggtgccaacattaatactgaacaattcaagtctgtcatcagccgctgccataagctccaagtattgtgggtatttgattctgtatgtgacgaaggccttgaggcagttgctgcaacatgtaaggatctgcgggagattcgagttttccctatcgaagctcgggaagatgcagatgccccagtttctgaagtaggcctccttgcaatttctgagggttgcaggaaactcaagtccatcttatatttctgccaaaaaatgacaaatgcagctgttatagctatgtcaaagaactgcccggaccttgtggtattccggctatgcattatgggtcggcacttgcctgaccatgttacaaatgaaccgatggatgaaggctttggggctattgtcaagaactgtaagaagcttactagacttgctgtatctggtttactgactgatagggctttcagttacattggacaatatggaaaactagtccgaaccttatcagttgcttttgccggaaacagtgacttggctctgaagtatgtgctcgagggctgccctaagttgcagaagttagagatcagggattgcccgtttggagatttgtctttgcgttctggtttacaccactattacaacatgaggttcctttggctatcatcttgtagagtaactctacaaggttgtcaggagattgctcgccaattgccccgtctagttgtggaagtcattagtggtgatgatgaggaagggagtgagactaatgagcatgtcaataccttgtacatgtaccgatctcttgatggaccgagggctgatgtaccctcatttgtccaaatactgtgaccgacctttatagaagataggaactttctgcagtcaattgattggtacctttgagaaatgatttaactattttcttgggaagagatgctctcgggaaatctgttgcaaatttccttgtagagaaaacgaatggtgatccacttgcaaaagcagcgagccaatgtgtaatgtattcaatgctggtctccctggatgtcattgtatatggttccgtacagagattgtttttttccagcaaggaaaatctagaagacaaaacgttgttgtatcagtaatcttttctattcttcatattcatggagccttcaattagcaagtggagtcaatgctagtaagggtagatgttccaaactcaaaaggcttttggatcaaattgcagctgaatgagatgtttttgcagaatcaacacgtgcatgctgggtcaagtagtatcttttcataccttgttattttttttttgtttcattgttagtttagagttggaagttcttttttatttttagttggtggatagcctaatggtcagtcagaagaatctcctccatctcgctttctagaaaaatattggttctttccaggatgtgttgtttcttagcacctgactgttgaatttattattgttatttttagaagaaatgtgagatgggtaataaatgccaaatatgcatggaccactttatggggaatgatcagcttgatagtgaaggaagacccataaatgttgtgtggaacaagtacaaaaatgcaggacccctcctctctcttatcctccattacctttccagctgatgatgaatggcccttatttctctttgtatctcgaggagcctgttctatacatggatggatagtacagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="160846" stop="158367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="160546" g_stop="160381" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="160380" i_stop="160292" i_length="89">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160291" g_stop="158672" g_length="1620"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="1786" r_length="1620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1789" polyA_stop="1801"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U318973" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1786</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="160546" e_stop="160381"/>
          <exon e_start="160291" e_stop="158672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGGGTATGTGGTTTGAATTTTTGCTAAATGTTCTTTTAAATTAAATTGTACTCTGTAATAGGGTTATATTGAGTTCAATTTTGATGTTTCAGGTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</genome_strand>
        <mrna_strand>CATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGG.........................................................................................GTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCACTTGCAAAAGCAGCGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCCTGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323712" ref_strand="+" ref_description="SGN-U323712        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT5G49980.1 | Symbol: None | transport inhibitor response protein, putative, E3 ubiquitin ligase SCF complex F-box subunit; similar to F-box containing protein TIR1 GI:13249030 from (Populus tremula x Populus tremuloides) | chr5:20351190-20353891 REVERSE | Aliases: K9P8.12, K9P8_12 (evalue: 1e-101, score=366) genbank/nr: gi|13249030|gb|AAK16647.1| F-box containing protein TIR1 [Populus tremula x Populus tremuloides](evalue: 8e-106, score=386)">
      <seq>aagcttaaaatcttgattagtgataaagaactgttttttttttcatcttcttcaactcttcctggatctgaaaaaaagatattttattacttcaagagggggggtttatttaatatttttgtttataaataaattattcaattcagatttcagagaaacacttcccattaatctagaccctcttttacccccaccccacccaccctacccaccccccacatgagtggtagtgacaatccttcagagatgtctgaagatgaggagcgtccttgtccttcagatctcaccggtggtgttactgcaaaagcaaggaactgttgctttaacgccgccgttaccggtggtggaggggggatttttaacttttcgccacacccagatcaagttcttgaaaatgtgctggaaaatgttctttgcttcttaactgatcgccgtgaccgtaacgctgcatcccttgtaagcaaatcttggtatcgggctgaggctttaaccagatccgaagtgtttattggcaactgttatgctgtttcgccgacccgggttacgacccgtttcaagagggtgacctctgtggccattaaagggaaacctaggtttgctgatttcagtttgcttcctccagattggggtgctcactttactccttgggcttcggttttgggtgattcttatcgtggccttgagaaattgtatctcaaacgtatgtccatatctgatgatgatctaggtttattggcgcgttgtttccccaatttcaaagagcttgttcttgtatgctgtgaaggttttgggactagtggacttgctattgtagcccgtgattgcaggcaaattagagtgcttgatctgattgagtctgaggtatctgacgatgaagtggactggatttcctacttccctgagaacaaaacgtgtttggagtctttgacctttgattgtgttgaatgccctatagactttgaggcattggagaagctagtaatcaggtcacctagtttgaagagactaaggttgaatcggtttgtttctattactcaactgtatcggttgatgattcgagctccacagcttaccaatctggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="-" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="162382" stop="160324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="162082" g_stop="161257" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="160879" g_stop="160624" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="828" r_stop="1083" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="-" ref_id="SGN-U323712" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1082</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="162082" e_stop="161257"/>
          <exon e_start="160879" e_stop="160624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGA--GGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAGGTTAGTATTGTTTTGTTGGGATATAGATCTATCTATGTGGTAACCCTTTTGGTAAAAAAGTTCAGATTTTTAATTGTTAGAAGCTGAATTCTTTTTACTGTAATGGGAATTTTACAGCTTAAACTAGTGTAGATATATTCTGTTATTTGAATTGGTGCTTCATGTGTGCTGGTGTTTGAATTAGTTGTATGATTGAAGTTGTTCTTTTAACTGTTCTATTTCTGCATTTGAAACTTAATGATACTTACTTCCTGAGGACACTAGCATTGAAGTTGTAATAATTAGTGACTTGTTGTATTGGATTTGTGAGTATGCAAGCTGTGAAATATGGTCTGGTAGTGTGATTTTCTTGTACATAATAGAAGGTTTTACTGCAGGCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGA</genome_strand>
        <mrna_strand>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGT-TTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGAGGGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336569" ref_strand="+" ref_description="SGN-U336569        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger homeobox family protein / ZF-HD homeobox family protein, hypothetical protein T8K22.16, Arabidopsis thalianachromosome II BAC T8K22, PATX:G3184285 | chr4:12724753-12725647 REVERSE | Aliases: F22K18.140, F22K18_140(evalue: 7e-25, score=111) genbank/nr: gi|13374061|emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis](evalue: 5e-24, score=114)">
      <seq>aactagtctcgagtttttttttttttttttttaaaattaattcataggatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgagaaagattggggtggcgtatgcaaaagcaagatgaggcattagtgcagcagttttgtgcagagacaaatgtcaagagacatgttttcaaagtttggatgcacaacaacaagcacactcttggtaaaaaaccctaaaactaaaaattttgcttaattttgctttttcacctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="147072" stop="185428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183616" g_stop="183634" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.579"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="183635" i_stop="184182" i_length="548">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184183" g_stop="184503" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="340" r_length="321" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="184588" g_stop="184661" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="414" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="184662" i_stop="184956" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.743" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="184957" g_stop="185128" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="586" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U336569" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183616" e_stop="183634"/>
          <exon e_start="184183" e_stop="184503"/>
          <exon e_start="184588" e_stop="184661"/>
          <exon e_start="184957" e_stop="185128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCATTCTCGTGCTTACTGTAAAGTAATTTCAGTATTCTTTCACTTTTACCTCACTTTGCCAAAACAATAAAAAAAAAATTATTTCATTAATCTAGCACATTATTTACTACAGTAAAAAAATTATTTTTAACATGATACTTTTCATTTTCTTAGATAAAAATGATTAATTTTTGAACTTGAACTATACGAAGATTTATGTGTAATCAAATTTTATACCGTTTGTATCTGGAAAAACAAATTACCTTTAATTTTTTTAAAAGAATTATATAAACTCTATTAGGGTTTTTGAAAAAAAGAAATAAAAAAAAAATTAAATGATGAAGAATCAAGTTTAAAAAGACCATCTTTTATTTTTCTTCTTTAATTTGGGTAATTGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTT</genome_strand>
        <mrna_strand>AACTAGTCTCGAGTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTAAAATTAATTCATAGGATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAG.......................................................................................................................................................................................................................................................................................................AAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318587" ref_strand="+" ref_description="SGN-U318587        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger homeobox family protein / ZF-HD homeobox family protein, hypothetical protein T8K22.16, Arabidopsis thalianachromosome II BAC T8K22, PATX:G3184285 | chr4:12724753-12725647 REVERSE | Aliases: F22K18.140, F22K18_140(evalue: 1e-57, score=221) genbank/nr: gi|13374061|emb|CAC34447.1| ZF-HD homeobox protein [Flaveria bidentis](evalue: 2e-66, score=256)">
      <seq>tgatgtccacaccctcttctttctcttatcttctcttctgatcttcatctttctcatcactaatcattttcccctttctcttttttttttcttctctcactatcaaaattctctaaatatacaacaaccccactttagatctattttttttctttaacttgagatgatgtagatttttatttttttgaaatagtcaattttttaaaattaattcataatatatataaagtgtgaaagaaaagaaaaagtgtgtagttaggtagttgagaagtgaaaattaagatggaatttgatgatgaccaagaagagcaggaacaagaaattggcgctgtgggagcggaaaattatgtaacgacggggaacaatagtggaagagaagaagggatttccactagtagtattggtagaaaaagtaatgttaggtatagagagtgtttgaagaatcacgcggtcggcataggtggccacgccctggatgggtgtggcgaatttatgccggccggtgaagaaggtactatggatgcacttaaatgtgcggcgtgtaattgccataggaatttccaccgtaaggaagcggaaggtgaggtatttcatcataccccacctccccaccttactcatcaccaccatcaccatccccaattttcacctttttcttcttatcgaaccacccaccatccatctggttacctacatgttaacccacccccacatcagcgccctttggcgctgccatctacttctagggacgacgaagatatgtcgaaccctagtagtagtgggggtgggggtggagggagtggtggggtgggtggttcaagaaagaggtttaggacaaagttcacaggagaccaaaaggataaaatgttggcatttgcagaaagattggggtggcgtatgcaaaagcaagatgaggcattagtgcagcagttttgtgcagagacaaatgtcaagagacatgttttcaaagtttggatgcacaacaacaagcacactcttggtaaaaaaccctaaaactaaaaattttgcttaattttgctttttcacctttttatagggtaaaaaaaagtaaatcaaagcatatgtagtatctatttgatggagctagctaggagggaaaaaaaaattggaacaaggaagctagttttaattaattagatcatcattaagccaaggatttgttgtaagagagtactattattatgattattattaacattttgatgataagtaacttgtttagggttgctagttacaagtacgtactagctagacattgttagtgagtcagtcggtcacctttggtactttctttatttaaattattttcttccatctgaatatttttacgtgttattggacgatatcttatgcaatattgatgagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0049I21-G8XkX/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0049I21.1" temp_strand="+" temp_description="C04SLm0049I21.1  CU928132.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0049I21 sequenced_by:sanger upload_account_name:uk">
        <position start="183692" stop="185646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="183992" g_stop="184503" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="184588" g_stop="185460" g_length="873"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="1385" r_length="874" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1388" polyA_stop="1397"/>
      <MATCH_line gen_id="C04SLm0049I21.1" gen_strand="+" ref_id="SGN-U318587" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1385</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0049I21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="183992" e_stop="184503"/>
          <exon e_start="184588" e_stop="185460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAGGTATTATTGTCTTGTAATTATTTATCTAAAAATAAAATTTTATATTATTTCAAAAAAAATATTAATTATATTATATCTCGACAGGTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAAGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGG-AAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAAGTAACTTGTTTAGGGTTGCTAGTTACAAGTACGTACTAGCTAGACATTGTTAGTGAGTCAGTCGGTCACCTTTGGTACTTTCTTTATTTAAATTATTTTCTTCCATCTGAATATTTTTACGTGTTATTGGACGATATCTTATGCAATATTGATGA</genome_strand>
        <mrna_strand>TGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCT-TTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGAAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG....................................................................................GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAACCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAGGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGGAAAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAAGTAACTTGTTTAGGGTTGCTAGTTACAAGTACGTACTAGCTAGACATTGTTAGTGAGTCAGTCGGTCACCTTTGGTACTTTCTTTATTTAAATTATTTTCTTCCATCTGAATATTTTTACGTGTTATTGGACGATATCTTATGCAATATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="13301" PGL_stop="12797"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13301" e_stop="12797"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="13301" e_stop="12797" e_length="505"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13301" stop="12797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCTGTCTCATAGGATTTTCAATTGTTTTCACTAATCTTCAAAAGCAAAAGCGAAACACGATTACACCAAACGTAAGAAAGAGTTATCAATCTTACCGTTAAGCAATAAACCTCTATTGCTCAACAAGCCAAAGTAGAAAAATAATCTACCCACTAAGCTATCCCACCTGGACAACCTAGACTTTGAAAACAACACACCAATTCCTTTATAGATTTAGGAGTGGTTTACAATTTAAGAACAAGAGAATAAATTCCTAAACAACTAGACGAAAAGCTCCAGATGTTGCTGTTGTCCTAGGAATGATTCTGCCTTTGCTTTGTATTAGCCTTTGCAAGAGTTCTTGAAAAGTGTTTATCAAGTTGCAAAAACTAGAGAAAAGTGTTTAGGAAAGTGCCTTTTATATGGGCAAGTCACTTTCCTAAACTTCTTTGCCATTGGTTGGAAGGGTCACACTTTCTGACGCCATCGGGAAGTGTGCACCTACTTTTTGCACCATCTCCAGT</gDNA_template>
            <first_frame> D  L  S  H  R  I  F  N  C  F  H  *  S  S  K  A  K  A  K  H  D  Y  T  K  R  K  K  E  L  S  I  L  P  L  S  N  K  P  L  L  L  N  K  P  K  *  K  N  N  L  P  T  K  L  S  H  L  D  N  L  D  F  E  N  N  T  P  I  P  L  *  I  *  E  W  F  T  I  *  E  Q  E  N  K  F  L  N  N  *  T  K  S  S  R  C  C  C  C  P  R  N  D  S  A  F  A  L  Y  *  P  L  Q  E  F  L  K  S  V  Y  Q  V  A  K  T  R  E  K  C  L  G  K  C  L  L  Y  G  Q  V  T  F  L  N  F  F  A  I  G  W  K  G  H  T  F  *  R  H  R  E  V  C  T  Y  F  L  H  H  L  Q  </first_frame>
            <second_frame>  T  C  L  I  G  F  S  I  V  F  T  N  L  Q  K  Q  K  R  N  T  I  T  P  N  V  R  K  S  Y  Q  S  Y  R  *  A  I  N  L  Y  C  S  T  S  Q  S  R  K  I  I  Y  P  L  S  Y  P  T  W  T  T  *  T  L  K  T  T  H  Q  F  L  Y  R  F  R  S  G  L  Q  F  K  N  K  R  I  N  S  *  T  T  R  R  K  A  P  D  V  A  V  V  L  G  M  I  L  P  L  L  C  I  S  L  C  K  S  S  *  K  V  F  I  K  L  Q  K  L  E  K  S  V  *  E  S  A  F  Y  M  G  K  S  L  S  *  T  S  L  P  L  V  G  R  V  T  L  S  D  A  I  G  K  C  A  P  T  F  C  T  I  S  S </second_frame>
            <third_frame>   P  V  S  *  D  F  Q  L  F  S  L  I  F  K  S  K  S  E  T  R  L  H  Q  T  *  E  R  V  I  N  L  T  V  K  Q  *  T  S  I  A  Q  Q  A  K  V  E  K  *  S  T  H  *  A  I  P  P  G  Q  P  R  L  *  K  Q  H  T  N  S  F  I  D  L  G  V  V  Y  N  L  R  T  R  E  *  I  P  K  Q  L  D  E  K  L  Q  M  L  L  L  S  *  E  *  F  C  L  C  F  V  L  A  F  A  R  V  L  E  K  C  L  S  S  C  K  N  *  R  K  V  F  R  K  V  P  F  I  W  A  S  H  F  P  K  L  L  C  H  W  L  E  G  S  H  F  L  T  P  S  G  S  V  H  L  L  F  A  P  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="18884" PGL_stop="21215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18884" e_stop="19123"/>
            <exon e_start="21192" e_stop="21215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.941" acc_prob="0.882" e_score="0.938"/>
          <exon-only e_score="0.542"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="18884" e_stop="19123" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.941" acc_prob="0.882">
            <gDNA_intron_boundary i_start="19124" i_stop="21191" i_length="2068"/>
          </intron>
          <exon e_serial="2" e_score="0.542">
            <gDNA_exon_boundary e_start="21192" e_stop="21215" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18884" stop="19123"/>
              <exon start="21192" stop="21215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAAGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGGTATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTCATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATGCAAGTGTAAAATCCTTACTATAGTGATATTTGTTGCTCCTCTCGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC : CTTCACAAAGAAACGAAATCGAAG</gDNA_template>
            <first_frame> R  I  T  K  E  R  K  E  E  *  G  I  T  E  E  N  N  L  *  G  K  I  E  S  V  S  G  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  A  S  V  K  S  L  L  *  *  Y  L  L  L  L  S  G  R  G  F  S  L  I  *  E  G  F  H  :  L  H  K  E  T  K  S  K </first_frame>
            <second_frame>  E  L  Q  R  R  E  K  K  S  E  A  S  Q  K  K  I  I  C  E  E  K  *  R  V  *  A  V  L  *  *  G  G  K  I  K  R  V  S  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  M  Q  V  *  N  P  Y  Y  S  D  I  C  C  S  S  R  V  V  V  F  L  L  F  R  R  V  S  T :   F  T  K  K  R  N  R   </second_frame>
            <third_frame>   N  Y  K  G  E  K  R  R  V  R  H  H  R  R  K  *  S  V  R  K  N  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  H  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  C  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  W  F  F  S  Y  L  G  G  F  P   : P  S  Q  R  N  E  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0049I21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33373" PGL_stop="33878"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33373" e_stop="33878"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="33373" e_stop="33878" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33373" stop="33878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341081" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTTTTAATTTGAATTAAAACTTGATTTAAAAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTATGGATGGAGTTGAGGTCCAGTTGCTGACGCTGATCTTTGCTTCCTTGATTCCACTAGGGCCCTCTTTCTCCTCCTCGTTGATCATGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGTGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATACTACCTCCCATGAAACCTGCTGATCGAAATGATTGATGCAATGGCGGTATGGGTTTCTTCAGTGGATAGTAGTACCCATCCCTAGGTGGTTTCCAATTGAGCCATTCTTCGGTAGTGTACTTATATCCCAAACCAAAAGTGGTGGAATGTCGAACAGACTATACATGTTCGACTATCCCTTGCAATTCAGCCCCTAAACCTTTCCCAAGATCGAAACTGAACCAGACCATCATATCTATAATTTTTTCGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  L  L  I  *  I  K  T  *  F  K  K  N  I  F  Q  G  Y  P  D  A  R  R  G  M  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  I  P  L  G  P  S  F  S  S  S  L  I  M  T  L  Q  T  F  P  S  S  L  V  S  D  N  P  F  K  S  S  E  I  S  S  I  L  P  P  M  K  P  A  D  R  N  D  *  C  N  G  G  M  G  F  F  S  G  *  *  Y  P  S  L  G  G  F  Q  L  S  H  S  S  V  V  Y  L  Y  P  K  P  K  V  V  E  C  R  T  D  Y  T  C  S  T  I  P  C  N  S  A  P  K  P  F  P  R  S  K  L  N  Q  T  I  I  S  I  I  F  S  L  N  Q  G  C  N  S  I  L   </first_frame>
            <second_frame>  L  F  *  F  E  L  K  L  D  L  K  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  L  R  S  S  C  *  R  *  S  L  L  P  *  F  H  *  G  P  L  S  P  P  R  *  S  *  R  C  K  L  S  P  L  L  W  L  V  I  T  P  S  S  R  L  R  S  H  Q  Y  Y  L  P  *  N  L  L  I  E  M  I  D  A  M  A  V  W  V  S  S  V  D  S  S  T  H  P  *  V  V  S  N  *  A  I  L  R  *  C  T  Y  I  P  N  Q  K  W  W  N  V  E  Q  T  I  H  V  R  L  S  L  A  I  Q  P  L  N  L  S  Q  D  R  N  *  T  R  P  S  Y  L  *  F  F  R  *  T  K  V  A  T  Q  Y  Y  </second_frame>
            <third_frame>   S  F  N  L  N  *  N  L  I  *  K  K  H  L  P  R  L  P  R  C  S  T  R  Y  G  W  S  *  G  P  V  A  D  A  D  L  C  F  L  D  S  T  R  A  L  F  L  L  L  V  D  H  D  V  A  N  F  P  L  F  F  G  *  *  *  P  L  Q  V  V  *  D  L  I  N  T  T  S  H  E  T  C  *  S  K  *  L  M  Q  W  R  Y  G  F  L  Q  W  I  V  V  P  I  P  R  W  F  P  I  E  P  F  F  G  S  V  L  I  S  Q  T  K  S  G  G  M  S  N  R  L  Y  M  F  D  Y  P  L  Q  F  S  P  *  T  F  P  K  I  E  T  E  P  D  H  H  I  Y  N  F  F  A  E  P  R  L  Q  L  N  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33400" stop="33636"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKKNIFQGYPDARRGMDGVEVQLLTLIFASLIPLGPSFSSSLIMTLQTFPSSLVSDNPFKSSEISSILPPMKPADRND*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33673" stop="33876"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPSLGGFQLSHSSVVYLYPKPKVVECRTDYTCSTIPCNSAPKPFPRSKLNQTIISIIFSLNQGCNSIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="44126" PGL_stop="43566"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44126" e_stop="43566"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="44126" e_stop="43566" e_length="561"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44126" stop="43566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345730" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAACTCACACCACTACTGTCATTTTTGAACTATTACATGTTGATATTTGGGGTCCATATCAAACACTAACTCATGACAACTTCAAATACTTCATTACCTTAGTAGATGATTTTAGTAAATCTACCTGGACACATCTTCTAAGCTGTAAAAGCAATGTTTTTCATATACTTAAAGCCTTTATACTCATGGTTGAGAACCAGTTCAACACCACTGTTAAAACCATCAGATCAGATAATGGTTTAGAATTCACTAGTAGTGAAACCACTTTGTTCTTCCAATCAAAAGGGATCATTCATCAGAAATCTTGTCCTTATACTCCTCAACAAAATGGTGTGGTCAAAAGAAAGCACAAATATATTCTTGAAACAGCAAGGGCTCTTCTTTTCCAGTCTAAACTCCCAGTGAAATATTGGGGTGAACGTATACTTGCTTCCACATATCTTATAAATAGACTACCTTCTTTTCCTCTCCATAATAAAACTCCCTATGATATCTTATATAAACACAAACCTACCTACTCACACTTAAAGAGTTTTGGATGTTTATGTTATCCTACTAC</gDNA_template>
            <first_frame> K  N  S  H  H  Y  C  H  F  *  T  I  T  C  *  Y  L  G  S  I  S  N  T  N  S  *  Q  L  Q  I  L  H  Y  L  S  R  *  F  *  *  I  Y  L  D  T  S  S  K  L  *  K  Q  C  F  S  Y  T  *  S  L  Y  T  H  G  *  E  P  V  Q  H  H  C  *  N  H  Q  I  R  *  W  F  R  I  H  *  *  *  N  H  F  V  L  P  I  K  R  D  H  S  S  E  I  L  S  L  Y  S  S  T  K  W  C  G  Q  K  K  A  Q  I  Y  S  *  N  S  K  G  S  S  F  P  V  *  T  P  S  E  I  L  G  *  T  Y  T  C  F  H  I  S  Y  K  *  T  T  F  F  S  S  P  *  *  N  S  L  *  Y  L  I  *  T  Q  T  Y  L  L  T  L  K  E  F  W  M  F  M  L  S  Y  Y </first_frame>
            <second_frame>  K  T  H  T  T  T  V  I  F  E  L  L  H  V  D  I  W  G  P  Y  Q  T  L  T  H  D  N  F  K  Y  F  I  T  L  V  D  D  F  S  K  S  T  W  T  H  L  L  S  C  K  S  N  V  F  H  I  L  K  A  F  I  L  M  V  E  N  Q  F  N  T  T  V  K  T  I  R  S  D  N  G  L  E  F  T  S  S  E  T  T  L  F  F  Q  S  K  G  I  I  H  Q  K  S  C  P  Y  T  P  Q  Q  N  G  V  V  K  R  K  H  K  Y  I  L  E  T  A  R  A  L  L  F  Q  S  K  L  P  V  K  Y  W  G  E  R  I  L  A  S  T  Y  L  I  N  R  L  P  S  F  P  L  H  N  K  T  P  Y  D  I  L  Y  K  H  K  P  T  Y  S  H  L  K  S  F  G  C  L  C  Y  P  T   </second_frame>
            <third_frame>   K  L  T  P  L  L  S  F  L  N  Y  Y  M  L  I  F  G  V  H  I  K  H  *  L  M  T  T  S  N  T  S  L  P  *  *  M  I  L  V  N  L  P  G  H  I  F  *  A  V  K  A  M  F  F  I  Y  L  K  P  L  Y  S  W  L  R  T  S  S  T  P  L  L  K  P  S  D  Q  I  M  V  *  N  S  L  V  V  K  P  L  C  S  S  N  Q  K  G  S  F  I  R  N  L  V  L  I  L  L  N  K  M  V  W  S  K  E  S  T  N  I  F  L  K  Q  Q  G  L  F  F  S  S  L  N  S  Q  *  N  I  G  V  N  V  Y  L  L  P  H  I  L  *  I  D  Y  L  L  F  L  S  I  I  K  L  P  M  I  S  Y  I  N  T  N  L  P  T  H  T  *  R  V  L  D  V  Y  V  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44125" stop="43568"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTHTTTVIFELLHVDIWGPYQTLTHDNFKYFITLVDDFSKSTWTHLLSCKSNVFHILKAFILMVENQFNTTVKTIRSDNGLEFTSSETTLFFQSKGIIHQKSCPYTPQQNGVVKRKHKYILETARALLFQSKLPVKYWGERILASTYLINRLPSFPLHNKTPYDILYKHKPTYSHLKSFGCLCYPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49513" PGL_stop="48788"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49513" e_stop="48788"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="49513" e_stop="48788" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49513" stop="49029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49088" stop="48788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344877" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCACAATACACCCGTAACCACTACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTGTGGGTCCTTCCTGGCCATCCCTAAATCACCACCACCCGTGCCACCCCCCACTACTCATCCCATGTTAACCCGTGGCAAAGCCAGTATCTTTAAACCCAAAACCTTTCAGGCTATCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTTTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGGTCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAAGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGTCGTGTGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTAATAAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCACTTCCCTCAACATGTTTGCAAACTCCAGAAGTGTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTAGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  Q  Y  T  R  N  H  Y  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  L  W  V  L  P  G  H  P  *  I  T  T  T  R  A  T  P  H  Y  S  S  H  V  N  P  W  Q  S  Q  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  W  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  R  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  V  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  H  N  T  P  V  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  C  G  S  F  L  A  I  P  K  S  P  P  P  V  P  P  P  T  T  H  P  M  L  T  R  G  K  A  S  I  F  K  P  K  T  F  Q  A  I  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  F  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  G  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  V  V  C  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  N  K  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  H  F  P  Q  H  V  C  K  L  Q  K  C  L  Y  G  L  K  Q  A  P  R  A  *  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  T  I  H  P  *  P  L  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  V  G  P  S  W  P  S  L  N  H  H  H  P  C  H  P  P  L  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  S  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  V  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  K  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  S  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  I  K  L  S  T  *  R  N  H  R  A  M  L  I  P  T  S  L  N  M  F  A  N  S  R  S  V  C  M  G  S  S  K  P  P  V  L  S  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49512" stop="48808"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHNTPVTTTHTHNQPEPPHTHNISSPIRCGSFLAIPKSPPPVPPPTTHPMLTRGKASIFKPKTFQAIILPNTPLPDSEPTTYFVASKNAYWRHAMDDEFKALTGQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETIRLVLSLVVCNNWLINQLDVSNAFLHGMLNKTIYMTQPPGYVDPHFPQHVCKLQKCLYGLKQAPRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="105555" PGL_stop="108193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105555" e_stop="106255"/>
            <exon e_start="107735" e_stop="108193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.969" e_score="0.989"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="105555" e_stop="106255" e_length="701"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.969">
            <gDNA_intron_boundary i_start="106256" i_stop="107734" i_length="1479"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="107735" e_stop="108193" e_length="459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="106255"/>
              <exon start="107735" stop="108193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325790" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCAAAAATCGAAAATGAAGAAGCTTATCTTCCTAATTTTCAACATAATTATGCTTTCCATCGGCAATTGCGGTGGCCCTTTAATCTCTCGACTCTATTTCATTCATGGCGGCCAACGAATTTGGATACCCAGCGTATTACAAACTGTTGGTTGTCCAGTTATTCTCATCCCTTTAGCCATTGCCTATTTTCAACGCCGTAAAATTCAAGGACCCGAGGCTAAAATCGTCTTTATCACACGGCAAGAGTTCATCGCATCTGCCGGAGTCGGTATCATCGTCGGACTCGATGGTTACTTAAACTCATGGGGACCCGCGAAATTACCCGTTTCAACTTCGACTCTAATCAACGCGACTCAGCTTGCGTTCACTGCGCTTTTTGCTGTGCTTATAGTCAAACAGAAATTGACTGCGTATTCGACGAATTCAGTCGTTTTGCTTATCGCCGGAGCTGCGACTTTAGCCCTCCGAGCGAACGGTGACCGCCCGGCCGGCGAGTCGGCGAAGGATTATATGTTGGGGTTTGTGATGACGTTTGTTGGTGCGGTGTTATATGGATTGATGTTGCCGTTAATTGAGTTGATCTATATGAAGTCGAAGCAAGCTGTTACTTACATTACTGTATTGGAGATTCAGATGGTTCTGGGAATTTCTGCTACTGTCTTTTGTACTATTGGAATGATTATCAACAAGGATTTCCAG : GCGATTCCAAGGGAAGCAAGTCAATATACAATTGGAGAATCTAAATATTATATGGTACTTGTATTGTGCGCTATTATTTGGCAATTCGCGCTCATGGGTTTGGTTGGAGTTATTTTTTATTCTTCATCTTTACTCTCTGGAATTATAGGCGCTTTTTTACTTCCTGTTACTGAAGTTTTGGCCGTAATTCTGTTTCACGAAAAATTTCAAGCGGAAAAAGGAGTTGCTATTTTTCTAGCTCTATGGGGATTTGTTTCATATTTTTATGGTGAATATGAACAAGGGAAGAAGGAGAAGAAAATGAAGATGAAGAAAAATGAGAGTCAAATATCTCAACAATTAGATATGGGCCAAACAGGCGCAGGACATGTTGTGTAGTAAATTTAACGTGATTGGCCAAATATTTTATTTTATTGTACTTGTATGAAAATTAATTAATCATTAGGTGCAAAAAAAAAA</gDNA_template>
            <first_frame> T  K  N  R  K  *  R  S  L  S  S  *  F  S  T  *  L  C  F  P  S  A  I  A  V  A  L  *  S  L  D  S  I  S  F  M  A  A  N  E  F  G  Y  P  A  Y  Y  K  L  L  V  V  Q  L  F  S  S  L  *  P  L  P  I  F  N  A  V  K  F  K  D  P  R  L  K  S  S  L  S  H  G  K  S  S  S  H  L  P  E  S  V  S  S  S  D  S  M  V  T  *  T  H  G  D  P  R  N  Y  P  F  Q  L  R  L  *  S  T  R  L  S  L  R  S  L  R  F  L  L  C  L  *  S  N  R  N  *  L  R  I  R  R  I  Q  S  F  C  L  S  P  E  L  R  L  *  P  S  E  R  T  V  T  A  R  P  A  S  R  R  R  I  I  C  W  G  L  *  *  R  L  L  V  R  C  Y  M  D  *  C  C  R  *  L  S  *  S  I  *  S  R  S  K  L  L  L  T  L  L  Y  W  R  F  R  W  F  W  E  F  L  L  L  S  F  V  L  L  E  *  L  S  T  R  I  S  R :   R  F  Q  G  K  Q  V  N  I  Q  L  E  N  L  N  I  I  W  Y  L  Y  C  A  L  L  F  G  N  S  R  S  W  V  W  L  E  L  F  F  I  L  H  L  Y  S  L  E  L  *  A  L  F  Y  F  L  L  L  K  F  W  P  *  F  C  F  T  K  N  F  K  R  K  K  E  L  L  F  F  *  L  Y  G  D  L  F  H  I  F  M  V  N  M  N  K  G  R  R  R  R  K  *  R  *  R  K  M  R  V  K  Y  L  N  N  *  I  W  A  K  Q  A  Q  D  M  L  C  S  K  F  N  V  I  G  Q  I  F  Y  F  I  V  L  V  *  K  L  I  N  H  *  V  Q  K  K   </first_frame>
            <second_frame>  P  K  I  E  N  E  E  A  Y  L  P  N  F  Q  H  N  Y  A  F  H  R  Q  L  R  W  P  F  N  L  S  T  L  F  H  S  W  R  P  T  N  L  D  T  Q  R  I  T  N  C  W  L  S  S  Y  S  H  P  F  S  H  C  L  F  S  T  P  *  N  S  R  T  R  G  *  N  R  L  Y  H  T  A  R  V  H  R  I  C  R  S  R  Y  H  R  R  T  R  W  L  L  K  L  M  G  T  R  E  I  T  R  F  N  F  D  S  N  Q  R  D  S  A  C  V  H  C  A  F  C  C  A  Y  S  Q  T  E  I  D  C  V  F  D  E  F  S  R  F  A  Y  R  R  S  C  D  F  S  P  P  S  E  R  *  P  P  G  R  R  V  G  E  G  L  Y  V  G  V  C  D  D  V  C  W  C  G  V  I  W  I  D  V  A  V  N  *  V  D  L  Y  E  V  E  A  S  C  Y  L  H  Y  C  I  G  D  S  D  G  S  G  N  F  C  Y  C  L  L  Y  Y  W  N  D  Y  Q  Q  G  F  P   : G  D  S  K  G  S  K  S  I  Y  N  W  R  I  *  I  L  Y  G  T  C  I  V  R  Y  Y  L  A  I  R  A  H  G  F  G  W  S  Y  F  L  F  F  I  F  T  L  W  N  Y  R  R  F  F  T  S  C  Y  *  S  F  G  R  N  S  V  S  R  K  I  S  S  G  K  R  S  C  Y  F  S  S  S  M  G  I  C  F  I  F  L  W  *  I  *  T  R  E  E  G  E  E  N  E  D  E  E  K  *  E  S  N  I  S  T  I  R  Y  G  P  N  R  R  R  T  C  C  V  V  N  L  T  *  L  A  K  Y  F  I  L  L  Y  L  Y  E  N  *  L  I  I  R  C  K  K  K  </second_frame>
            <third_frame>   Q  K  S  K  M  K  K  L  I  F  L  I  F  N  I  I  M  L  S  I  G  N  C  G  G  P  L  I  S  R  L  Y  F  I  H  G  G  Q  R  I  W  I  P  S  V  L  Q  T  V  G  C  P  V  I  L  I  P  L  A  I  A  Y  F  Q  R  R  K  I  Q  G  P  E  A  K  I  V  F  I  T  R  Q  E  F  I  A  S  A  G  V  G  I  I  V  G  L  D  G  Y  L  N  S  W  G  P  A  K  L  P  V  S  T  S  T  L  I  N  A  T  Q  L  A  F  T  A  L  F  A  V  L  I  V  K  Q  K  L  T  A  Y  S  T  N  S  V  V  L  L  I  A  G  A  A  T  L  A  L  R  A  N  G  D  R  P  A  G  E  S  A  K  D  Y  M  L  G  F  V  M  T  F  V  G  A  V  L  Y  G  L  M  L  P  L  I  E  L  I  Y  M  K  S  K  Q  A  V  T  Y  I  T  V  L  E  I  Q  M  V  L  G  I  S  A  T  V  F  C  T  I  G  M  I  I  N  K  D  F  Q  :  A  I  P  R  E  A  S  Q  Y  T  I  G  E  S  K  Y  Y  M  V  L  V  L  C  A  I  I  W  Q  F  A  L  M  G  L  V  G  V  I  F  Y  S  S  S  L  L  S  G  I  I  G  A  F  L  L  P  V  T  E  V  L  A  V  I  L  F  H  E  K  F  Q  A  E  K  G  V  A  I  F  L  A  L  W  G  F  V  S  Y  F  Y  G  E  Y  E  Q  G  K  K  E  K  K  M  K  M  K  K  N  E  S  Q  I  S  Q  Q  L  D  M  G  Q  T  G  A  G  H  V  V  *  *  I  *  R  D  W  P  N  I  L  F  Y  C  T  C  M  K  I  N  *  S  L  G  A  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105557" stop="106255"/>
                    <exon start="107735" stop="108112"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKSKMKKLIFLIFNIIMLSIGNCGGPLISRLYFIHGGQRIWIPSVLQTVGCPVILIPLAIAYFQRRKIQGPEAKIVFITRQEFIASAGVGIIVGLDGYLNSWGPAKLPVSTSTLINATQLAFTALFAVLIVKQKLTAYSTNSVVLLIAGAATLALRANGDRPAGESAKDYMLGFVMTFVGAVLYGLMLPLIELIYMKSKQAVTYITVLEIQMVLGISATVFCTIGMIINKDFQAIPREASQYTIGESKYYMVLVLCAIIWQFALMGLVGVIFYSSSLLSGIIGAFLLPVTEVLAVILFHEKFQAEKGVAIFLALWGFVSYFYGEYEQGKKEKKMKMKKNESQISQQLDMGQTGAGHVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="112972" PGL_stop="112558"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112972" e_stop="112558"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="112972" e_stop="112558" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112972" stop="112558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329009" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTAACTCAAGTGAGGGCATTAATGTGGTGGAATTGTTGGGCTGATCCAGAAGGCTGGACTTTGTGGGCTATTCTCTGGCCTGCCCTATCCAAGCATAGAGTTGGGCTATGTAGCTAGCCCAAGCGAAGGCATAGGCTGCTTGGCTCCTAGAGTGGGGTGGATCGCGTGAGGCTGGTTTCACAGAGCAACGAACAGCTCCCGTTCTATCCAGTGGAAGGATCACGGGTTAGTGTTCATGAAGTCCAACTAAAACCTAATGGGCTGCTTCAACTAAACCACCATTTTTTGACCTTAATGTATATAATATTTTTATGGGCAACTTTCACATATAACAAACAAATAATTCACATTTGTATGCTATAGTAAAGTTTGTATAATTGCGCTCCATAGCAAACATAAAACTGTATAATTC</gDNA_template>
            <first_frame> L  V  T  Q  V  R  A  L  M  W  W  N  C  W  A  D  P  E  G  W  T  L  W  A  I  L  W  P  A  L  S  K  H  R  V  G  L  C  S  *  P  K  R  R  H  R  L  L  G  S  *  S  G  V  D  R  V  R  L  V  S  Q  S  N  E  Q  L  P  F  Y  P  V  E  G  S  R  V  S  V  H  E  V  Q  L  K  P  N  G  L  L  Q  L  N  H  H  F  L  T  L  M  Y  I  I  F  L  W  A  T  F  T  Y  N  K  Q  I  I  H  I  C  M  L  *  *  S  L  Y  N  C  A  P  *  Q  T  *  N  C  I  I  </first_frame>
            <second_frame>  L  *  L  K  *  G  H  *  C  G  G  I  V  G  L  I  Q  K  A  G  L  C  G  L  F  S  G  L  P  Y  P  S  I  E  L  G  Y  V  A  S  P  S  E  G  I  G  C  L  A  P  R  V  G  W  I  A  *  G  W  F  H  R  A  T  N  S  S  R  S  I  Q  W  K  D  H  G  L  V  F  M  K  S  N  *  N  L  M  G  C  F  N  *  T  T  I  F  *  P  *  C  I  *  Y  F  Y  G  Q  L  S  H  I  T  N  K  *  F  T  F  V  C  Y  S  K  V  C  I  I  A  L  H  S  K  H  K  T  V  *  F </second_frame>
            <third_frame>   C  N  S  S  E  G  I  N  V  V  E  L  L  G  *  S  R  R  L  D  F  V  G  Y  S  L  A  C  P  I  Q  A  *  S  W  A  M  *  L  A  Q  A  K  A  *  A  A  W  L  L  E  W  G  G  S  R  E  A  G  F  T  E  Q  R  T  A  P  V  L  S  S  G  R  I  T  G  *  C  S  *  S  P  T  K  T  *  W  A  A  S  T  K  P  P  F  F  D  L  N  V  Y  N  I  F  M  G  N  F  H  I  *  Q  T  N  N  S  H  L  Y  A  I  V  K  F  V  *  L  R  S  I  A  N  I  K  L  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112819" stop="112607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGVDRVRLVSQSNEQLPFYPVEGSRVSVHEVQLKPNGLLQLNHHFLTLMYIIFLWATFTYNKQIIHICML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="120179" PGL_stop="118263"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120179" e_stop="120135"/>
            <exon e_start="119388" e_stop="119295"/>
            <exon e_start="119210" e_stop="119078"/>
            <exon e_start="118582" e_stop="118263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.870" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="120179" e_stop="120135" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.870">
            <gDNA_intron_boundary i_start="120134" i_stop="119389" i_length="746"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="119388" e_stop="119295" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.931">
            <gDNA_intron_boundary i_start="119294" i_stop="119211" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="119210" e_stop="119078" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="119077" i_stop="118583" i_length="495"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="118582" e_stop="118263" e_length="320"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120179" stop="120135"/>
              <exon start="119388" stop="119295"/>
              <exon start="119210" stop="119078"/>
              <exon start="118582" stop="118263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTTCTCCAAGCACATCCGTTGTTGTCGTCAGTCAGTCTTGCAG : GTGTTCTCCACTTCTAAATCTATTTGTGTAAAGCCACTGTCAAGATGCAGAACGACGAAGGACAAAACATGGACCTTTACATCCCTAGGAAGTG : CTCTGCCACTAACAGGCTGATAACTTCCAAGGATCATGCATCTGTTCAGCTCAATGTTGGCCATTTGGATGAGTCTGGCCGATACACTGGCCAGTTCACCACTTATGCTCTCTGTGGATTTATTCGCGCCCAG : GGAGACGCCGATAGTGCTCTTGATAGGCTCTGGCAAAAGAAAAAGGCTGAAGTTGGACAACAATGAGAGTTTTCTATTTGGTGTTACCATTCTTGAAAAATGAGAGTTTTCAATTTAGTATTGTATTACCAGCAGTTCTGTGTTTAGTGGCTGTTCTGTTTTATGTTTAAAGTTCATTATCAGACAAATGGAACTTGCTTGTTACTATTTTAGTGCATTTAACTTGATTTTCTACCGTTAAAAGATAACTTTTGGAGATAACAAATATGTGCTGTTGTTTTAATGAATTGGCCTGGTTCATGAGCCATTTCTTACGTTGC</gDNA_template>
            <first_frame> V  F  S  K  H  I  R  C  C  R  Q  S  V  L  Q  :  V  F  S  T  S  K  S  I  C  V  K  P  L  S  R  C  R  T  T  K  D  K  T  W  T  F  T  S  L  G  S   : A  L  P  L  T  G  *  *  L  P  R  I  M  H  L  F  S  S  M  L  A  I  W  M  S  L  A  D  T  L  A  S  S  P  L  M  L  S  V  D  L  F  A  P  R :   E  T  P  I  V  L  L  I  G  S  G  K  R  K  R  L  K  L  D  N  N  E  S  F  L  F  G  V  T  I  L  E  K  *  E  F  S  I  *  Y  C  I  T  S  S  S  V  F  S  G  C  S  V  L  C  L  K  F  I  I  R  Q  M  E  L  A  C  Y  Y  F  S  A  F  N  L  I  F  Y  R  *  K  I  T  F  G  D  N  K  Y  V  L  L  F  *  *  I  G  L  V  H  E  P  F  L  T  L  </first_frame>
            <second_frame>  S  S  P  S  T  S  V  V  V  V  S  Q  S  C  R :   C  S  P  L  L  N  L  F  V  *  S  H  C  Q  D  A  E  R  R  R  T  K  H  G  P  L  H  P  *  E  V  :  L  C  H  *  Q  A  D  N  F  Q  G  S  C  I  C  S  A  Q  C  W  P  F  G  *  V  W  P  I  H  W  P  V  H  H  L  C  S  L  W  I  Y  S  R  P   : G  R  R  R  *  C  S  *  *  A  L  A  K  E  K  G  *  S  W  T  T  M  R  V  F  Y  L  V  L  P  F  L  K  N  E  S  F  Q  F  S  I  V  L  P  A  V  L  C  L  V  A  V  L  F  Y  V  *  S  S  L  S  D  K  W  N  L  L  V  T  I  L  V  H  L  T  *  F  S  T  V  K  R  *  L  L  E  I  T  N  M  C  C  C  F  N  E  L  A  W  F  M  S  H  F  L  R  C </second_frame>
            <third_frame>   L  L  Q  A  H  P  L  L  S  S  V  S  L  A   : G  V  L  H  F  *  I  Y  L  C  K  A  T  V  K  M  Q  N  D  E  G  Q  N  M  D  L  Y  I  P  R  K  C :   S  A  T  N  R  L  I  T  S  K  D  H  A  S  V  Q  L  N  V  G  H  L  D  E  S  G  R  Y  T  G  Q  F  T  T  Y  A  L  C  G  F  I  R  A  Q  :  G  D  A  D  S  A  L  D  R  L  W  Q  K  K  K  A  E  V  G  Q  Q  *  E  F  S  I  W  C  Y  H  S  *  K  M  R  V  F  N  L  V  L  Y  Y  Q  Q  F  C  V  *  W  L  F  C  F  M  F  K  V  H  Y  Q  T  N  G  T  C  L  L  L  F  *  C  I  *  L  D  F  L  P  L  K  D  N  F  W  R  *  Q  I  C  A  V  V  L  M  N  W  P  G  S  *  A  I  S  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119371" stop="119295"/>
                    <exon start="119210" stop="119078"/>
                    <exon start="118582" stop="118517"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLCKATVKMQNDEGQNMDLYIPRKCSATNRLITSKDHASVQLNVGHLDESGRYTGQFTTYALCGFIRAQGDADSALDRLWQKKKAEVGQQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119187" stop="119078"/>
                    <exon start="118582" stop="118480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPRIMHLFSSMLAIWMSLADTLASSPLMLSVDLFAPRETPIVLLIGSGKRKRLKLDNNESFLFGVTILEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="121893" PGL_stop="121067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121893" e_stop="121067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="121893" e_stop="121067" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121893" stop="121067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341248" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAGGAAAGTGACAGAATGTTTGAGTTTTGCAGTCATCATTTCAATGACATTAGAGTAATTCTCTTGGTAAAGAGAAGCTCGTCGAGTTTGGGACCTTGCCGATAAGGAGAAATCAAAAGGGGATGAATACTGGATATGGAAAAGGATGACAACTAGAAACAAGGTGAAAAAAGAGATGGTGATGAATTTGGTGGTTAACATTTTGGTCTTATTTCGAGTGCATGACTTGGATTGATGTTCCATTTTCATCGAGTTAATAAGCATCAAAATACTATTTCTCTGGTTTTTAGGAGCAAATTGAATGTCAAGATTGAAAGTTAAAATCTTTATATATTATATAAAAACCAGCTGACATAAAACATAGGTAGTAATGAGGCCTGAGGGATTCCTTGTCAATAGTTTCCATGTTTACAGATGTATGCTTAGTGAATATTTTAGTTGATAGAAGTGTGTAAGGTCAGAGATGGAGCCATGTTTTGCGTTAAACTTTGTTGTTTTTGGTACTTTTTTCCTAGTTTTGTCAACCTTCCATTAAATTCTTCACAGCCAAAAAAGATATTTTATACACTTGGGCTGCATTTACCTTCCCTGGCACCTTGTCGAGATCTCCTTGGAGTATCTCAAAATATTACATTCATTTAAAAAAAAAAGTACAATACACAATAATACGACATAATACAATATAATATATTACGAAATAATATACCTCCAAACAAAGTGTTACAGGGCGTTTGGTAAATTATATAAGTAAAATTATTGCATACATTAACTCTATGTATTAGTAGTACCTTATTTGGCATACTTTTTCATGCTATATATAAATTAT</gDNA_template>
            <first_frame> G  G  K  *  Q  N  V  *  V  L  Q  S  S  F  Q  *  H  *  S  N  S  L  G  K  E  K  L  V  E  F  G  T  L  P  I  R  R  N  Q  K  G  M  N  T  G  Y  G  K  G  *  Q  L  E  T  R  *  K  K  R  W  *  *  I  W  W  L  T  F  W  S  Y  F  E  C  M  T  W  I  D  V  P  F  S  S  S  *  *  A  S  K  Y  Y  F  S  G  F  *  E  Q  I  E  C  Q  D  *  K  L  K  S  L  Y  I  I  *  K  P  A  D  I  K  H  R  *  *  *  G  L  R  D  S  L  S  I  V  S  M  F  T  D  V  C  L  V  N  I  L  V  D  R  S  V  *  G  Q  R  W  S  H  V  L  R  *  T  L  L  F  L  V  L  F  S  *  F  C  Q  P  S  I  K  F  F  T  A  K  K  D  I  L  Y  T  W  A  A  F  T  F  P  G  T  L  S  R  S  P  W  S  I  S  K  Y  Y  I  H  L  K  K  K  V  Q  Y  T  I  I  R  H  N  T  I  *  Y  I  T  K  *  Y  T  S  K  Q  S  V  T  G  R  L  V  N  Y  I  S  K  I  I  A  Y  I  N  S  M  Y  *  *  Y  L  I  W  H  T  F  S  C  Y  I  *  I   </first_frame>
            <second_frame>  E  E  S  D  R  M  F  E  F  C  S  H  H  F  N  D  I  R  V  I  L  L  V  K  R  S  S  S  S  L  G  P  C  R  *  G  E  I  K  R  G  *  I  L  D  M  E  K  D  D  N  *  K  Q  G  E  K  R  D  G  D  E  F  G  G  *  H  F  G  L  I  S  S  A  *  L  G  L  M  F  H  F  H  R  V  N  K  H  Q  N  T  I  S  L  V  F  R  S  K  L  N  V  K  I  E  S  *  N  L  Y  I  L  Y  K  N  Q  L  T  *  N  I  G  S  N  E  A  *  G  I  P  C  Q  *  F  P  C  L  Q  M  Y  A  *  *  I  F  *  L  I  E  V  C  K  V  R  D  G  A  M  F  C  V  K  L  C  C  F  W  Y  F  F  P  S  F  V  N  L  P  L  N  S  S  Q  P  K  K  I  F  Y  T  L  G  L  H  L  P  S  L  A  P  C  R  D  L  L  G  V  S  Q  N  I  T  F  I  *  K  K  K  Y  N  T  Q  *  Y  D  I  I  Q  Y  N  I  L  R  N  N  I  P  P  N  K  V  L  Q  G  V  W  *  I  I  *  V  K  L  L  H  T  L  T  L  C  I  S  S  T  L  F  G  I  L  F  H  A  I  Y  K  L  </second_frame>
            <third_frame>   R  K  V  T  E  C  L  S  F  A  V  I  I  S  M  T  L  E  *  F  S  W  *  R  E  A  R  R  V  W  D  L  A  D  K  E  K  S  K  G  D  E  Y  W  I  W  K  R  M  T  T  R  N  K  V  K  K  E  M  V  M  N  L  V  V  N  I  L  V  L  F  R  V  H  D  L  D  *  C  S  I  F  I  E  L  I  S  I  K  I  L  F  L  W  F  L  G  A  N  *  M  S  R  L  K  V  K  I  F  I  Y  Y  I  K  T  S  *  H  K  T  *  V  V  M  R  P  E  G  F  L  V  N  S  F  H  V  Y  R  C  M  L  S  E  Y  F  S  *  *  K  C  V  R  S  E  M  E  P  C  F  A  L  N  F  V  V  F  G  T  F  F  L  V  L  S  T  F  H  *  I  L  H  S  Q  K  R  Y  F  I  H  L  G  C  I  Y  L  P  W  H  L  V  E  I  S  L  E  Y  L  K  I  L  H  S  F  K  K  K  S  T  I  H  N  N  T  T  *  Y  N  I  I  Y  Y  E  I  I  Y  L  Q  T  K  C  Y  R  A  F  G  K  L  Y  K  *  N  Y  C  I  H  *  L  Y  V  L  V  V  P  Y  L  A  Y  F  F  M  L  Y  I  N  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121454" stop="121251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIEVCKVRDGAMFCVKLCCFWYFFPSFVNLPLNSSQPKKIFYTLGLHLPSLAPCRDLLGVSQNITFI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="130991" PGL_stop="127993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130991" e_stop="130837"/>
            <exon e_start="130733" e_stop="130610"/>
            <exon e_start="129155" e_stop="129099"/>
            <exon e_start="128470" e_stop="127993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.862"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.928" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.862">
            <gDNA_exon_boundary e_start="130991" e_stop="130837" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130836" i_stop="130734" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="130733" e_stop="130610" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="130609" i_stop="129156" i_length="1454"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="129155" e_stop="129099" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.928">
            <gDNA_intron_boundary i_start="129098" i_stop="128471" i_length="628"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="128470" e_stop="127993" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130991" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="127993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130988" stop="130837"/>
              <exon start="130733" stop="130610"/>
              <exon start="129155" stop="129099"/>
              <exon start="128470" stop="128002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321871" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAAAATTCGAGTTCTCGACGATCTTTGGCAGCAAAGTCATTCCCTGTACGATAGTTTCAAGTTTTTCTTAGGGTTTCTTCAGTACTCTCTTTCAATGGCTTCTAGCTCTCATAGAGGCAGTGATTTCTACGGGGCTGCTTCATATAGATCCAG : AGATGGATTGAGCACGAGGCAAGTAGGTAGTGCAGATGAAATACAGTTGCGGATTGATCCGATGCACGGAGATTTAGATGATGAGATCACAGGTCTTCGCAAGCAAGTAAAACAGCTCAGAAAT : GTAGCACAAGAAATTGAGTCGGAAGCAAAGTATCAGAATGATTTTATTAGCCAACTG : CAAATGACATTGATCAAAGCTCAGGCAGGAGTAAAGAACAACATGAGACGGTTGAACAGGAGTATCATCCAGGAAGGGTCAAACCATGTGATGCATGTGGTTCTTTTTGCTCTATTTTGCTTCTTTATAATATATTGGTTGGCCAAGTTTTCACGGAGATAAGTGCAACTCACTTTCTATGTTGGTTTGCTGTTTCCTGGTACAAGTTCTGATGAAGACACAATCTATTCAAGCCATCAAACAGATTCTAAGCAGTGGCAGAGTTTTAGTGATTTGGGAAGCAAGGGGGGCAACTGTAGGAACTCCGGATATTAGTCTTATGTAAAGCTTCCTAATCTGTAGAAAACCGTGGGTTGCTACTATTTAACCTTTTTCTTTTCATTTTATTGTTCTTTGTAATACTTGCTATATGACAATGACCAGTGGGTGCTTACCTTAGAAAAATGTGATTATGGTGCAATGGAGTATGTTATATAAT</gDNA_template>
            <first_frame> Q  K  I  R  V  L  D  D  L  W  Q  Q  S  H  S  L  Y  D  S  F  K  F  F  L  G  F  L  Q  Y  S  L  S  M  A  S  S  S  H  R  G  S  D  F  Y  G  A  A  S  Y  R  S  R :   D  G  L  S  T  R  Q  V  G  S  A  D  E  I  Q  L  R  I  D  P  M  H  G  D  L  D  D  E  I  T  G  L  R  K  Q  V  K  Q  L  R  N  :  V  A  Q  E  I  E  S  E  A  K  Y  Q  N  D  F  I  S  Q  L  :  Q  M  T  L  I  K  A  Q  A  G  V  K  N  N  M  R  R  L  N  R  S  I  I  Q  E  G  S  N  H  V  M  H  V  V  L  F  A  L  F  C  F  F  I  I  Y  W  L  A  K  F  S  R  R  *  V  Q  L  T  F  Y  V  G  L  L  F  P  G  T  S  S  D  E  D  T  I  Y  S  S  H  Q  T  D  S  K  Q  W  Q  S  F  S  D  L  G  S  K  G  G  N  C  R  N  S  G  Y  *  S  Y  V  K  L  P  N  L  *  K  T  V  G  C  Y  Y  L  T  F  F  F  S  F  Y  C  S  L  *  Y  L  L  Y  D  N  D  Q  W  V  L  T  L  E  K  C  D  Y  G  A  M  E  Y  V  I  *  </first_frame>
            <second_frame>  R  K  F  E  F  S  T  I  F  G  S  K  V  I  P  C  T  I  V  S  S  F  S  *  G  F  F  S  T  L  F  Q  W  L  L  A  L  I  E  A  V  I  S  T  G  L  L  H  I  D  P   : E  M  D  *  A  R  G  K  *  V  V  Q  M  K  Y  S  C  G  L  I  R  C  T  E  I  *  M  M  R  S  Q  V  F  A  S  K  *  N  S  S  E  M :   *  H  K  K  L  S  R  K  Q  S  I  R  M  I  L  L  A  N  C :   K  *  H  *  S  K  L  R  Q  E  *  R  T  T  *  D  G  *  T  G  V  S  S  R  K  G  Q  T  M  *  C  M  W  F  F  L  L  Y  F  A  S  L  *  Y  I  G  W  P  S  F  H  G  D  K  C  N  S  L  S  M  L  V  C  C  F  L  V  Q  V  L  M  K  T  Q  S  I  Q  A  I  K  Q  I  L  S  S  G  R  V  L  V  I  W  E  A  R  G  A  T  V  G  T  P  D  I  S  L  M  *  S  F  L  I  C  R  K  P  W  V  A  T  I  *  P  F  S  F  H  F  I  V  L  C  N  T  C  Y  M  T  M  T  S  G  C  L  P  *  K  N  V  I  M  V  Q  W  S  M  L  Y  N </second_frame>
            <third_frame>   E  N  S  S  S  R  R  S  L  A  A  K  S  F  P  V  R  *  F  Q  V  F  L  R  V  S  S  V  L  S  F  N  G  F  *  L  S  *  R  Q  *  F  L  R  G  C  F  I  *  I  Q  :  R  W  I  E  H  E  A  S  R  *  C  R  *  N  T  V  A  D  *  S  D  A  R  R  F  R  *  *  D  H  R  S  S  Q  A  S  K  T  A  Q  K   : C  S  T  R  N  *  V  G  S  K  V  S  E  *  F  Y  *  P  T   : A  N  D  I  D  Q  S  S  G  R  S  K  E  Q  H  E  T  V  E  Q  E  Y  H  P  G  R  V  K  P  C  D  A  C  G  S  F  C  S  I  L  L  L  Y  N  I  L  V  G  Q  V  F  T  E  I  S  A  T  H  F  L  C  W  F  A  V  S  W  Y  K  F  *  *  R  H  N  L  F  K  P  S  N  R  F  *  A  V  A  E  F  *  *  F  G  K  Q  G  G  Q  L  *  E  L  R  I  L  V  L  C  K  A  S  *  S  V  E  N  R  G  L  L  L  F  N  L  F  L  F  I  L  L  F  F  V  I  L  A  I  *  Q  *  P  V  G  A  Y  L  R  K  M  *  L  W  C  N  G  V  C  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130991" stop="130837"/>
                    <exon start="130733" stop="130610"/>
                    <exon start="129155" stop="129099"/>
                    <exon start="128470" stop="128309"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKIRVLDDLWQQSHSLYDSFKFFLGFLQYSLSMASSSHRGSDFYGAASYRSRDGLSTRQVGSADEIQLRIDPMHGDLDDEITGLRKQVKQLRNVAQEIESEAKYQNDFISQLQMTLIKAQAGVKNNMRRLNRSIIQEGSNHVMHVVLFALFCFFIIYWLAKFSRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128340" stop="128146"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YIGWPSFHGDKCNSLSMLVCCFLVQVLMKTQSIQAIKQILSSGRVLVIWEARGATVGTPDISLM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="136261" PGL_stop="139666"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="136261" e_stop="136526"/>
            <exon e_start="136626" e_stop="136724"/>
            <exon e_start="137022" e_stop="137063"/>
            <exon e_start="137191" e_stop="137320"/>
            <exon e_start="139128" e_stop="139229"/>
            <exon e_start="139329" e_stop="139666"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.803" acc_prob="0.993" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="136261" e_stop="136526" e_length="266"/>
          </exon>
          <intron i_serial="1" don_prob="0.803" acc_prob="0.993">
            <gDNA_intron_boundary i_start="136527" i_stop="136625" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136626" e_stop="136724" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="136725" i_stop="137021" i_length="297"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="137022" e_stop="137063" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="137064" i_stop="137190" i_length="127"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="137191" e_stop="137320" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.921">
            <gDNA_intron_boundary i_start="137321" i_stop="139127" i_length="1807"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="139128" e_stop="139229" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="139230" i_stop="139328" i_length="99"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="139329" e_stop="139666" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="136261" stop="136526"/>
              <exon start="136626" stop="136724"/>
              <exon start="137022" stop="137063"/>
              <exon start="137191" stop="137320"/>
              <exon start="139128" stop="139229"/>
              <exon start="139329" stop="139666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATTTGAATTTCTGAAAAAAATATTGCTACCATGGGAAGTGTAGGTGATTCGAAAACTCATCAGAGGAAACCCAGATTTTTGTGCCTTCATGGATTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAACTGAAGTTGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGAAAATCTGAAGTTGAAGGCATCTTTGACCCTCCCTATTACGAGTGGTTTCAATTCAATAAG : GAATTTACAGAGTATGAGAATTTTGATAAATGTCTTGAATACATAGAAGAATGTATGATCAAACATGGACCTTTCGATGGTCTTCTTGGTTTCTCTCAG : GGGGCAATTCTTTCCGGAGCATTGTCGGGGTTGCAGGCTAAG : GAAGTGGGACTTACAAAGGCATCAAAAATTAAATATCTGATCATAATTGGAGGTGCTAAATTTCGGAATAAATCAGTGGCCGAAAAAGCTTATTCACCAGCAATTGCATGCCCTTCCGTTCATTTTTTAG : GTGAGCAAGATTACCTAAAACAGTATGGGATAGAACTGTTGGAATCATGTGTTGATCCAGTGGTGATTCATCATCCTAGGGGTCACACTATACCAAGATTCG : ATGAGAAAGGATCAGAGAGTATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAACAAGTGATCAAGTTTGATAATTTTTTTTCAAAAAAAAAAATAGTGGTAGTCCCTAGTTTGGGACATGTAGTTACCACCTTTTTTTAATATAAATAAAATAGCTCCGAGTAATTAGTATTTTACAATGTAGGAATGAAAAATACCAGACCATGCTATTGTATTTACCGCAGTTTGCCATTCGATTATATTGATATAAAAATCTTTTATCAGTTCTAACTTTTAGAAATTTATAGTTTAAAATATGTTTGCAAAAACATATATTTTCATTTTCATTTTGGAA</gDNA_template>
            <first_frame> S  F  E  F  L  K  K  I  L  L  P  W  E  V  *  V  I  R  K  L  I  R  G  N  P  D  F  C  A  F  M  D  F  E  Q  V  G  K  F  *  R  S  K  Y  L  I  N  G  Q  L  K  L  W  I  N  *  I  *  F  L  L  M  R  L  F  H  L  K  E  N  L  K  L  K  A  S  L  T  L  P  I  T  S  G  F  N  S  I  R :   N  L  Q  S  M  R  I  L  I  N  V  L  N  T  *  K  N  V  *  S  N  M  D  L  S  M  V  F  L  V  S  L  R :   G  Q  F  F  P  E  H  C  R  G  C  R  L  R :   K  W  D  L  Q  R  H  Q  K  L  N  I  *  S  *  L  E  V  L  N  F  G  I  N  Q  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  I  F  *  :  V  S  K  I  T  *  N  S  M  G  *  N  C  W  N  H  V  L  I  Q  W  *  F  I  I  L  G  V  T  L  Y  Q  D  S  :  M  R  K  D  Q  R  V  C  L  V  S  L  R  R  C  K  K  R  L  T  S  D  Q  V  *  *  F  F  F  K  K  K  N  S  G  S  P  *  F  G  T  C  S  Y  H  L  F  L  I  *  I  K  *  L  R  V  I  S  I  L  Q  C  R  N  E  K  Y  Q  T  M  L  L  Y  L  P  Q  F  A  I  R  L  Y  *  Y  K  N  L  L  S  V  L  T  F  R  N  L  *  F  K  I  C  L  Q  K  H  I  F  S  F  S  F  W   </first_frame>
            <second_frame>  H  L  N  F  *  K  K  Y  C  Y  H  G  K  C  R  *  F  E  N  S  S  E  E  T  Q  I  F  V  P  S  W  I  S  N  K  W  E  N  F  E  E  A  N  I  *  *  M  A  N  *  S  C  G  *  I  R  S  S  F  C  *  C  A  F  S  I  S  R  K  I  *  S  *  R  H  L  *  P  S  L  L  R  V  V  S  I  Q  *   : G  I  Y  R  V  *  E  F  *  *  M  S  *  I  H  R  R  M  Y  D  Q  T  W  T  F  R  W  S  S  W  F  L  S   : G  G  N  S  F  R  S  I  V  G  V  A  G  *   : G  S  G  T  Y  K  G  I  K  N  *  I  S  D  H  N  W  R  C  *  I  S  E  *  I  S  G  R  K  S  L  F  T  S  N  C  M  P  F  R  S  F  F  R :   *  A  R  L  P  K  T  V  W  D  R  T  V  G  I  M  C  *  S  S  G  D  S  S  S  *  G  S  H  Y  T  K  I  R :   *  E  R  I  R  E  Y  A  *  F  H  *  E  G  A  R  R  D  *  Q  V  I  K  F  D  N  F  F  S  K  K  K  I  V  V  V  P  S  L  G  H  V  V  T  T  F  F  *  Y  K  *  N  S  S  E  *  L  V  F  Y  N  V  G  M  K  N  T  R  P  C  Y  C  I  Y  R  S  L  P  F  D  Y  I  D  I  K  I  F  Y  Q  F  *  L  L  E  I  Y  S  L  K  Y  V  C  K  N  I  Y  F  H  F  H  F  G  </second_frame>
            <third_frame>   I  *  I  S  E  K  N  I  A  T  M  G  S  V  G  D  S  K  T  H  Q  R  K  P  R  F  L  C  L  H  G  F  R  T  S  G  K  I  L  K  K  Q  I  F  D  K  W  P  T  E  V  V  D  K  L  D  L  V  F  V  D  A  P  F  P  S  Q  G  K  S  E  V  E  G  I  F  D  P  P  Y  Y  E  W  F  Q  F  N  K  :  E  F  T  E  Y  E  N  F  D  K  C  L  E  Y  I  E  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  S  G  L  Q  A  K  :  E  V  G  L  T  K  A  S  K  I  K  Y  L  I  I  I  G  G  A  K  F  R  N  K  S  V  A  E  K  A  Y  S  P  A  I  A  C  P  S  V  H  F  L   : G  E  Q  D  Y  L  K  Q  Y  G  I  E  L  L  E  S  C  V  D  P  V  V  I  H  H  P  R  G  H  T  I  P  R  F   : D  E  K  G  S  E  S  M  L  S  F  I  E  K  V  Q  E  E  I  N  K  *  S  S  L  I  I  F  F  Q  K  K  K  *  W  *  S  L  V  W  D  M  *  L  P  P  F  F  N  I  N  K  I  A  P  S  N  *  Y  F  T  M  *  E  *  K  I  P  D  H  A  I  V  F  T  A  V  C  H  S  I  I  L  I  *  K  S  F  I  S  S  N  F  *  K  F  I  V  *  N  M  F  A  K  T  Y  I  F  I  F  I  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="136269" stop="136526"/>
                    <exon start="136626" stop="136724"/>
                    <exon start="137022" stop="137063"/>
                    <exon start="137191" stop="137320"/>
                    <exon start="139128" stop="139229"/>
                    <exon start="139329" stop="139393"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEKNIATMGSVGDSKTHQRKPRFLCLHGFRTSGKILKKQIFDKWPTEVVDKLDLVFVDAPFPSQGKSEVEGIFDPPYYEWFQFNKEFTEYENFDKCLEYIEECMIKHGPFDGLLGFSQGAILSGALSGLQAKEVGLTKASKIKYLIIIGGAKFRNKSVAEKAYSPAIACPSVHFLGEQDYLKQYGIELLESCVDPVVIHHPRGHTIPRFDEKGSESMLSFIEKVQEEINK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="142331" PGL_stop="143729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="142331" e_stop="142643"/>
            <exon e_start="142738" e_stop="142836"/>
            <exon e_start="143039" e_stop="143080"/>
            <exon e_start="143160" e_stop="143289"/>
            <exon e_start="143394" e_stop="143495"/>
            <exon e_start="143632" e_stop="143729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.600" acc_prob="0.983" e_score="0.984"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="0.990"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="0.992"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="142331" e_stop="142643" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.600" acc_prob="0.983">
            <gDNA_intron_boundary i_start="142644" i_stop="142737" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="142738" e_stop="142836" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="142837" i_stop="143038" i_length="202"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="143039" e_stop="143080" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="143081" i_stop="143159" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="143160" e_stop="143289" e_length="130"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="143290" i_stop="143393" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="143394" e_stop="143495" e_length="102"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="143496" i_stop="143631" i_length="136"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="143632" e_stop="143729" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="142331" stop="142643"/>
              <exon start="142738" stop="142836"/>
              <exon start="143039" stop="143080"/>
              <exon start="143160" stop="143289"/>
              <exon start="143394" stop="143495"/>
              <exon start="143632" stop="143729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315179" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACTGTACTATTTACCCAAAATTTTCTCCAAAATGTACGGGAACACTATGAATATGGCAAATTCAGCCGCCACCATGGCAGGTGAAGGAACTGCCAACGCCAATCAGAGGAAATTACCCAGATTTTTGTGCCTTCATGGGTTTCGAACAAGTGGGAAAATTTTGAAGAAGCAAATATTTGATAAATGGCCAATTGAAGTGGTGGATAAATTAGATCTAGTTTTTGTTGATGCGCCTTTTCCATCTCAAGGCAAATCTGAAGTTGAAGGCATATTTGCCCCTCCTTATTATGAATGGTACCAGTTCAATAAG : GAATTGAATGAGTATGAGAATTTTGATAACTGTCTTGATTATATACAAGAGTGTATGATTAAGCACGGACCTTTCGATGGTCTTCTTGGTTTCTCCCAG : GGGGCAATTCTTTCTGGAGCATTGCGTGGATTGCAGGATAAG : GGAGTGGGACTTACTAAGGTTCGCAAAATTAAATATCTGATCATAATTGGAGGTGCGAAAATGCAGATTAAATCACTGGCCGAAAAAGCTTATTCACCAGCAATTACATGCCCTTCCGTTCACTTTTTAG : GTGAGAAAGACTTCCTGAAGCCGTATGGGATGGAACTTTTGGAATCATATGTTGATCCAGTGGTCATTCATCATCCTAAGGGCCATACTATACCAAGATTTG : ATGAGAAAGGATTAGAGAGCATGCTTAGTTTCATTGAGAAGGTGCAAGAAGAGATTAGTACAAGTGAACAAGTTTGATGAAATTACATTTTTATATGA</gDNA_template>
            <first_frame> D  T  V  L  F  T  Q  N  F  L  Q  N  V  R  E  H  Y  E  Y  G  K  F  S  R  H  H  G  R  *  R  N  C  Q  R  Q  S  E  E  I  T  Q  I  F  V  P  S  W  V  S  N  K  W  E  N  F  E  E  A  N  I  *  *  M  A  N  *  S  G  G  *  I  R  S  S  F  C  *  C  A  F  S  I  S  R  Q  I  *  S  *  R  H  I  C  P  S  L  L  *  M  V  P  V  Q  *   : G  I  E  *  V  *  E  F  *  *  L  S  *  L  Y  T  R  V  Y  D  *  A  R  T  F  R  W  S  S  W  F  L  P   : G  G  N  S  F  W  S  I  A  W  I  A  G  *   : G  S  G  T  Y  *  G  S  Q  N  *  I  S  D  H  N  W  R  C  E  N  A  D  *  I  T  G  R  K  S  L  F  T  S  N  Y  M  P  F  R  S  L  F  R :   *  E  R  L  P  E  A  V  W  D  G  T  F  G  I  I  C  *  S  S  G  H  S  S  S  *  G  P  Y  Y  T  K  I  * :   *  E  R  I  R  E  H  A  *  F  H  *  E  G  A  R  R  D  *  Y  K  *  T  S  L  M  K  L  H  F  Y  M  </first_frame>
            <second_frame>  I  L  Y  Y  L  P  K  I  F  S  K  M  Y  G  N  T  M  N  M  A  N  S  A  A  T  M  A  G  E  G  T  A  N  A  N  Q  R  K  L  P  R  F  L  C  L  H  G  F  R  T  S  G  K  I  L  K  K  Q  I  F  D  K  W  P  I  E  V  V  D  K  L  D  L  V  F  V  D  A  P  F  P  S  Q  G  K  S  E  V  E  G  I  F  A  P  P  Y  Y  E  W  Y  Q  F  N  K  :  E  L  N  E  Y  E  N  F  D  N  C  L  D  Y  I  Q  E  C  M  I  K  H  G  P  F  D  G  L  L  G  F  S  Q  :  G  A  I  L  S  G  A  L  R  G  L  Q  D  K  :  G  V  G  L  T  K  V  R  K  I  K  Y  L  I  I  I  G  G  A  K  M  Q  I  K  S  L  A  E  K  A  Y  S  P  A  I  T  C  P  S  V  H  F  L   : G  E  K  D  F  L  K  P  Y  G  M  E  L  L  E  S  Y  V  D  P  V  V  I  H  H  P  K  G  H  T  I  P  R  F   : D  E  K  G  L  E  S  M  L  S  F  I  E  K  V  Q  E  E  I  S  T  S  E  Q  V  *  *  N  Y  I  F  I  * </second_frame>
            <third_frame>   Y  C  T  I  Y  P  K  F  S  P  K  C  T  G  T  L  *  I  W  Q  I  Q  P  P  P  W  Q  V  K  E  L  P  T  P  I  R  G  N  Y  P  D  F  C  A  F  M  G  F  E  Q  V  G  K  F  *  R  S  K  Y  L  I  N  G  Q  L  K  W  W  I  N  *  I  *  F  L  L  M  R  L  F  H  L  K  A  N  L  K  L  K  A  Y  L  P  L  L  I  M  N  G  T  S  S  I  R :   N  *  M  S  M  R  I  L  I  T  V  L  I  I  Y  K  S  V  *  L  S  T  D  L  S  M  V  F  L  V  S  P  R :   G  Q  F  F  L  E  H  C  V  D  C  R  I  R :   E  W  D  L  L  R  F  A  K  L  N  I  *  S  *  L  E  V  R  K  C  R  L  N  H  W  P  K  K  L  I  H  Q  Q  L  H  A  L  P  F  T  F  *  :  V  R  K  T  S  *  S  R  M  G  W  N  F  W  N  H  M  L  I  Q  W  S  F  I  I  L  R  A  I  L  Y  Q  D  L  :  M  R  K  D  *  R  A  C  L  V  S  L  R  R  C  K  K  R  L  V  Q  V  N  K  F  D  E  I  T  F  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="142332" stop="142643"/>
                    <exon start="142738" stop="142836"/>
                    <exon start="143039" stop="143080"/>
                    <exon start="143160" stop="143289"/>
                    <exon start="143394" stop="143495"/>
                    <exon start="143632" stop="143708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILYYLPKIFSKMYGNTMNMANSAATMAGEGTANANQRKLPRFLCLHGFRTSGKILKKQIFDKWPIEVVDKLDLVFVDAPFPSQGKSEVEGIFAPPYYEWYQFNKELNEYENFDNCLDYIQECMIKHGPFDGLLGFSQGAILSGALRGLQDKGVGLTKVRKIKYLIIIGGAKMQIKSLAEKAYSPAITCPSVHFLGEKDFLKPYGMELLESYVDPVVIHHPKGHTIPRFDEKGLESMLSFIEKVQEEISTSEQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="160546" PGL_stop="158672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="160546" e_stop="160381"/>
            <exon e_start="160291" e_stop="158672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.951" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="160546" e_stop="160381" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.951" acc_prob="1.000">
            <gDNA_intron_boundary i_start="160380" i_stop="160292" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="160291" e_stop="158672" e_length="1620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="160546" stop="160381"/>
              <exon start="160291" stop="158672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318973" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGGTCTGTCTCTCTGGTTTCAGGGAAATTGCTCCTGAATATCTGCCTGCAATCTATCCAGTTTGTGGCAATCTGACCTCTCTTAATTTAAGCTATGGTGCCAACATTAATACTGAACAATTCAAGTCTGTCATCAGCCGCTGCCATAAGCTCCAAGTATTGTGG : GTATTTGATTCTGTATGTGACGAAGGCCTTGAGGCAGTTGCTGCAACATGTAAGGATCTGCGGGAGATTCGAGTTTTCCCTATCGAAGCTCGGGAAGATGCAGATGCCCCAGTTTCTGAAGTAGGCCTCCTTGCAATTTCTGAGGGTTGCAGGAAACTCAAGTCCATCTTATATTTCTGCCAAAAAATGACAAATGCAGCTGTTATAGCTATGTCAAAGAACTGCCCGGACCTTGTGGTATTCCGGCTATGCATTATGGGTCGGCACTTGCCTGACCATGTTACAAATGAACCGATGGATGAAGGCTTTGGGGCTATTGTCAAGAACTGTAAGAAGCTTACTAGACTTGCTGTATCTGGTTTACTGACTGATAGGGCTTTCAGTTACATTGGACAATATGGAAAACTAGTCCGAACCTTATCAGTTGCTTTTGCCGGAAACAGTGACTTGGCTCTGAAGTATGTGCTCGAGGGCTGCCCTAAGTTGCAGAAGTTAGAGATCAGGGATTGCCCGTTTGGAGATTTGTCTTTGCGTTCTGGTTTACACCACTATTACAACATGAGGTTCCTTTGGCTATCATCTTGTAGAGTAACTCTACAAGGTTGTCAGGAGATTGCTCGCCAATTGCCCCGTCTAGTTGTGGAAGTCATTAGTGGTGATGATGAGGAAGGGAGTGAGACTAATGAGCATGTCAATACCTTGTACATGTACCGATCTCTTGATGGACCGAGGGCTGATGTACCCTCATTTGTCCAAATACTGTGACCGACCTTTATAGAAGATAGGAACTTTCTGCAGTCAATTGATTGGTACCTTTGAGAAATGATTTAACTATTTTCTTGGGAAGAGATGCTCTCGGGAAATCTGTTGCAAATTTCCTTGTAGAGAAAACGAATGGTGATCCTCTTGCAAAAGCAGTGAGCCAATGTGTAATGTATTCAATGCTGGTCTCCATGGATGTCATTGTATATGGTTCCGTACAGAGATTGTTTTTTTCCAGCAAGGAAAATCTAGAAGACAAAACGTTGTTGTATCAGTAATCTTTTCTATTCTTCATATTCATGGAGCCTTCAATTAGCAAGTGGAGTCAATGCTAGTAAGGGTAGATGTTCCAAACTCAAAAGGCTTTTGGATCAAATTGCAGCTGAATGAGATGTTTTTGCAGAATCAACACGTGCATGCTGGGTCAAGTAGTATCTTTTCATACCTTGTTATTTTTTTTTTGTTTCATTGTTAGTTTAGAGTTGGAAGTTCTTTTTTATTTTTAGTTGGTGGATAGCCTAATGGTCAGTCAGAAGAATCTCCTCCATCTCGCTTTCTAGAAAAATATTGGTTCTTTCCAGGATGTGTTGTTTCTTAGCACCTGACTGTTGAATTTATTATTGTTATTTTTAGAAGAAATGTGAGATGGGTAATAAATGCCAAATATGCATGGACCACTTTATGGGGAATGATCAGCTTGATAGTGAAGGAAGACCCATAAATGTTGTGTGGAACAAGTACAAAAATGCAGGACCCCTCCTCTCTCTTATCCTCCATTACCTTTCCAGCTGATGATGAATGGCCCTTATTTCTCTTTGTATCTCGAGGAGCCTGTTCTATACATGGATGGATAGTACA</gDNA_template>
            <first_frame> H  G  L  S  L  W  F  Q  G  N  C  S  *  I  S  A  C  N  L  S  S  L  W  Q  S  D  L  S  *  F  K  L  W  C  Q  H  *  Y  *  T  I  Q  V  C  H  Q  P  L  P  *  A  P  S  I  V   : G  I  *  F  C  M  *  R  R  P  *  G  S  C  C  N  M  *  G  S  A  G  D  S  S  F  P  Y  R  S  S  G  R  C  R  C  P  S  F  *  S  R  P  P  C  N  F  *  G  L  Q  E  T  Q  V  H  L  I  F  L  P  K  N  D  K  C  S  C  Y  S  Y  V  K  E  L  P  G  P  C  G  I  P  A  M  H  Y  G  S  A  L  A  *  P  C  Y  K  *  T  D  G  *  R  L  W  G  Y  C  Q  E  L  *  E  A  Y  *  T  C  C  I  W  F  T  D  *  *  G  F  Q  L  H  W  T  I  W  K  T  S  P  N  L  I  S  C  F  C  R  K  Q  *  L  G  S  E  V  C  A  R  G  L  P  *  V  A  E  V  R  D  Q  G  L  P  V  W  R  F  V  F  A  F  W  F  T  P  L  L  Q  H  E  V  P  L  A  I  I  L  *  S  N  S  T  R  L  S  G  D  C  S  P  I  A  P  S  S  C  G  S  H  *  W  *  *  *  G  R  E  *  D  *  *  A  C  Q  Y  L  V  H  V  P  I  S  *  W  T  E  G  *  C  T  L  I  C  P  N  T  V  T  D  L  Y  R  R  *  E  L  S  A  V  N  *  L  V  P  L  R  N  D  L  T  I  F  L  G  R  D  A  L  G  K  S  V  A  N  F  L  V  E  K  T  N  G  D  P  L  A  K  A  V  S  Q  C  V  M  Y  S  M  L  V  S  M  D  V  I  V  Y  G  S  V  Q  R  L  F  F  S  S  K  E  N  L  E  D  K  T  L  L  Y  Q  *  S  F  L  F  F  I  F  M  E  P  S  I  S  K  W  S  Q  C  *  *  G  *  M  F  Q  T  Q  K  A  F  G  S  N  C  S  *  M  R  C  F  C  R  I  N  T  C  M  L  G  Q  V  V  S  F  H  T  L  L  F  F  F  C  F  I  V  S  L  E  L  E  V  L  F  Y  F  *  L  V  D  S  L  M  V  S  Q  K  N  L  L  H  L  A  F  *  K  N  I  G  S  F  Q  D  V  L  F  L  S  T  *  L  L  N  L  L  L  L  F  L  E  E  M  *  D  G  *  *  M  P  N  M  H  G  P  L  Y  G  E  *  S  A  *  *  *  R  K  T  H  K  C  C  V  E  Q  V  Q  K  C  R  T  P  P  L  S  Y  P  P  L  P  F  Q  L  M  M  N  G  P  Y  F  S  L  Y  L  E  E  P  V  L  Y  M  D  G  *  Y  </first_frame>
            <second_frame>  M  V  C  L  S  G  F  R  E  I  A  P  E  Y  L  P  A  I  Y  P  V  C  G  N  L  T  S  L  N  L  S  Y  G  A  N  I  N  T  E  Q  F  K  S  V  I  S  R  C  H  K  L  Q  V  L  W  :  V  F  D  S  V  C  D  E  G  L  E  A  V  A  A  T  C  K  D  L  R  E  I  R  V  F  P  I  E  A  R  E  D  A  D  A  P  V  S  E  V  G  L  L  A  I  S  E  G  C  R  K  L  K  S  I  L  Y  F  C  Q  K  M  T  N  A  A  V  I  A  M  S  K  N  C  P  D  L  V  V  F  R  L  C  I  M  G  R  H  L  P  D  H  V  T  N  E  P  M  D  E  G  F  G  A  I  V  K  N  C  K  K  L  T  R  L  A  V  S  G  L  L  T  D  R  A  F  S  Y  I  G  Q  Y  G  K  L  V  R  T  L  S  V  A  F  A  G  N  S  D  L  A  L  K  Y  V  L  E  G  C  P  K  L  Q  K  L  E  I  R  D  C  P  F  G  D  L  S  L  R  S  G  L  H  H  Y  Y  N  M  R  F  L  W  L  S  S  C  R  V  T  L  Q  G  C  Q  E  I  A  R  Q  L  P  R  L  V  V  E  V  I  S  G  D  D  E  E  G  S  E  T  N  E  H  V  N  T  L  Y  M  Y  R  S  L  D  G  P  R  A  D  V  P  S  F  V  Q  I  L  *  P  T  F  I  E  D  R  N  F  L  Q  S  I  D  W  Y  L  *  E  M  I  *  L  F  S  W  E  E  M  L  S  G  N  L  L  Q  I  S  L  *  R  K  R  M  V  I  L  L  Q  K  Q  *  A  N  V  *  C  I  Q  C  W  S  P  W  M  S  L  Y  M  V  P  Y  R  D  C  F  F  P  A  R  K  I  *  K  T  K  R  C  C  I  S  N  L  F  Y  S  S  Y  S  W  S  L  Q  L  A  S  G  V  N  A  S  K  G  R  C  S  K  L  K  R  L  L  D  Q  I  A  A  E  *  D  V  F  A  E  S  T  R  A  C  W  V  K  *  Y  L  F  I  P  C  Y  F  F  F  V  S  L  L  V  *  S  W  K  F  F  F  I  F  S  W  W  I  A  *  W  S  V  R  R  I  S  S  I  S  L  S  R  K  I  L  V  L  S  R  M  C  C  F  L  A  P  D  C  *  I  Y  Y  C  Y  F  *  K  K  C  E  M  G  N  K  C  Q  I  C  M  D  H  F  M  G  N  D  Q  L  D  S  E  G  R  P  I  N  V  V  W  N  K  Y  K  N  A  G  P  L  L  S  L  I  L  H  Y  L  S  S  *  *  *  M  A  L  I  S  L  C  I  S  R  S  L  F  Y  T  W  M  D  S  T </second_frame>
            <third_frame>   W  S  V  S  L  V  S  G  K  L  L  L  N  I  C  L  Q  S  I  Q  F  V  A  I  *  P  L  L  I  *  A  M  V  P  T  L  I  L  N  N  S  S  L  S  S  A  A  A  I  S  S  K  Y  C  G :   Y  L  I  L  Y  V  T  K  A  L  R  Q  L  L  Q  H  V  R  I  C  G  R  F  E  F  S  L  S  K  L  G  K  M  Q  M  P  Q  F  L  K  *  A  S  L  Q  F  L  R  V  A  G  N  S  S  P  S  Y  I  S  A  K  K  *  Q  M  Q  L  L  *  L  C  Q  R  T  A  R  T  L  W  Y  S  G  Y  A  L  W  V  G  T  C  L  T  M  L  Q  M  N  R  W  M  K  A  L  G  L  L  S  R  T  V  R  S  L  L  D  L  L  Y  L  V  Y  *  L  I  G  L  S  V  T  L  D  N  M  E  N  *  S  E  P  Y  Q  L  L  L  P  E  T  V  T  W  L  *  S  M  C  S  R  A  A  L  S  C  R  S  *  R  S  G  I  A  R  L  E  I  C  L  C  V  L  V  Y  T  T  I  T  T  *  G  S  F  G  Y  H  L  V  E  *  L  Y  K  V  V  R  R  L  L  A  N  C  P  V  *  L  W  K  S  L  V  V  M  M  R  K  G  V  R  L  M  S  M  S  I  P  C  T  C  T  D  L  L  M  D  R  G  L  M  Y  P  H  L  S  K  Y  C  D  R  P  L  *  K  I  G  T  F  C  S  Q  L  I  G  T  F  E  K  *  F  N  Y  F  L  G  K  R  C  S  R  E  I  C  C  K  F  P  C  R  E  N  E  W  *  S  S  C  K  S  S  E  P  M  C  N  V  F  N  A  G  L  H  G  C  H  C  I  W  F  R  T  E  I  V  F  F  Q  Q  G  K  S  R  R  Q  N  V  V  V  S  V  I  F  S  I  L  H  I  H  G  A  F  N  *  Q  V  E  S  M  L  V  R  V  D  V  P  N  S  K  G  F  W  I  K  L  Q  L  N  E  M  F  L  Q  N  Q  H  V  H  A  G  S  S  S  I  F  S  Y  L  V  I  F  F  L  F  H  C  *  F  R  V  G  S  S  F  L  F  L  V  G  G  *  P  N  G  Q  S  E  E  S  P  P  S  R  F  L  E  K  Y  W  F  F  P  G  C  V  V  S  *  H  L  T  V  E  F  I  I  V  I  F  R  R  N  V  R  W  V  I  N  A  K  Y  A  W  T  T  L  W  G  M  I  S  L  I  V  K  E  D  P  *  M  L  C  G  T  S  T  K  M  Q  D  P  S  S  L  L  S  S  I  T  F  P  A  D  D  E  W  P  L  F  L  F  V  S  R  G  A  C  S  I  H  G  W  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="160545" stop="160381"/>
                    <exon start="160291" stop="159527"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVCLSGFREIAPEYLPAIYPVCGNLTSLNLSYGANINTEQFKSVISRCHKLQVLWVFDSVCDEGLEAVAATCKDLREIRVFPIEAREDADAPVSEVGLLAISEGCRKLKSILYFCQKMTNAAVIAMSKNCPDLVVFRLCIMGRHLPDHVTNEPMDEGFGAIVKNCKKLTRLAVSGLLTDRAFSYIGQYGKLVRTLSVAFAGNSDLALKYVLEGCPKLQKLEIRDCPFGDLSLRSGLHHYYNMRFLWLSSCRVTLQGCQEIARQLPRLVVEVISGDDEEGSETNEHVNTLYMYRSLDGPRADVPSFVQIL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159485" stop="159252"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVPLRNDLTIFLGRDALGKSVANFLVEKTNGDPLAKAVSQCVMYSMLVSMDVIVYGSVQRLFFSSKENLEDKTLLYQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="162082" PGL_stop="160624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="162082" e_stop="161257"/>
            <exon e_start="160879" e_stop="160624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.989" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="162082" e_stop="161257" e_length="826"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.989">
            <gDNA_intron_boundary i_start="161256" i_stop="160880" i_length="377"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="160879" e_stop="160624" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="162082" stop="161257"/>
              <exon start="160879" stop="160624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCTTAAAATCTTGATTAGTGATAAAGAACTGTTTTTTTTTTTCATCTTCTTCAACTCTTCCTGGATCTGAAAAAAAGATATTTTATTACTTCAAGAGGGGGTTTATTTAATATTTTTGTTTATAAATAAATTATTCAATTCAGATTTCAGAGAAACACTTCCCATTAATCTAGACCCTCTTTTACCCCCACCCCACCCACCCTACCCACCCCCCACATGAGTGGTAGTGACAATCCTTCAGAGATGTCTGAAGATGAGGAGCGTCCTTGTCCTTCAGATCTCACCGGTGGTGTTACTGCAAAAGCAAGGAACTGTTGCTTTAACGCCGCCGTTACCGGTGGTGGAGGGGGGATTTTTAACTTTTCGCCACACCCAGATCAAGTTCTTGAAAATGTGCTGGAAAATGTTCTTTGCTTCTTAACTGATCGCCGTGACCGTAACGCTGCATCCCTTGTAAGCAAATCTTGGTATCGGGCTGAGGCTTTAACCAGATCCGAAGTGTTTATTGGCAACTGTTATGCTGTTTCGCCGACCCGGGTTACGACCCGTTTCAAGAGGGTGACCTCTGTGGCCATTAAAGGGAAACCTAGGTTTGCTGATTTCAGTTTGCTTCCTCCAGATTGGGGTGCTCACTTTACTCCTTGGGCTTCGGTTTTGGGTGATTCTTATCGTGGCCTTGAGAAATTGTATCTCAAACGTATGTCCATATCTGATGATGATCTAGGTTTATTGGCGCGTTGTTTCCCCAATTTCAAAGAGCTTGTTCTTGTATGCTGTGAAGGTTTTGGGACTAGTGGACTTGCTATTGTAGCCCGTGATTGCAG : GCAAATTAGAGTGCTTGATCTGATTGAGTCTGAGGTATCTGACGATGAAGTGGACTGGATTTCCTACTTCCCTGAGAACAAAACGTGTTTGGAGTCTTTGACCTTTGATTGTGTTGAATGCCCTATAGACTTTGAGGCATTGGAGAAGCTAGTAATCAGGTCACCTAGTTTGAAGAGACTAAGGTTGAATCGGTTTGTTTCTATTACTCAACTGTATCGGTTGATGATTCGAGCTCCACAGCTTACCAATCTGGGA</gDNA_template>
            <first_frame> K  L  K  I  L  I  S  D  K  E  L  F  F  F  F  I  F  F  N  S  S  W  I  *  K  K  D  I  L  L  L  Q  E  G  V  Y  L  I  F  L  F  I  N  K  L  F  N  S  D  F  R  E  T  L  P  I  N  L  D  P  L  L  P  P  P  H  P  P  Y  P  P  P  T  *  V  V  V  T  I  L  Q  R  C  L  K  M  R  S  V  L  V  L  Q  I  S  P  V  V  L  L  Q  K  Q  G  T  V  A  L  T  P  P  L  P  V  V  E  G  G  F  L  T  F  R  H  T  Q  I  K  F  L  K  M  C  W  K  M  F  F  A  S  *  L  I  A  V  T  V  T  L  H  P  L  *  A  N  L  G  I  G  L  R  L  *  P  D  P  K  C  L  L  A  T  V  M  L  F  R  R  P  G  L  R  P  V  S  R  G  *  P  L  W  P  L  K  G  N  L  G  L  L  I  S  V  C  F  L  Q  I  G  V  L  T  L  L  L  G  L  R  F  W  V  I  L  I  V  A  L  R  N  C  I  S  N  V  C  P  Y  L  M  M  I  *  V  Y  W  R  V  V  S  P  I  S  K  S  L  F  L  Y  A  V  K  V  L  G  L  V  D  L  L  L  *  P  V  I  A   : G  K  L  E  C  L  I  *  L  S  L  R  Y  L  T  M  K  W  T  G  F  P  T  S  L  R  T  K  R  V  W  S  L  *  P  L  I  V  L  N  A  L  *  T  L  R  H  W  R  S  *  *  S  G  H  L  V  *  R  D  *  G  *  I  G  L  F  L  L  L  N  C  I  G  *  *  F  E  L  H  S  L  P  I  W   </first_frame>
            <second_frame>  S  L  K  S  *  L  V  I  K  N  C  F  F  F  S  S  S  S  T  L  P  G  S  E  K  K  I  F  Y  Y  F  K  R  G  F  I  *  Y  F  C  L  *  I  N  Y  S  I  Q  I  S  E  K  H  F  P  L  I  *  T  L  F  Y  P  H  P  T  H  P  T  H  P  P  H  E  W  *  *  Q  S  F  R  D  V  *  R  *  G  A  S  L  S  F  R  S  H  R  W  C  Y  C  K  S  K  E  L  L  L  *  R  R  R  Y  R  W  W  R  G  D  F  *  L  F  A  T  P  R  S  S  S  *  K  C  A  G  K  C  S  L  L  L  N  *  S  P  *  P  *  R  C  I  P  C  K  Q  I  L  V  S  G  *  G  F  N  Q  I  R  S  V  Y  W  Q  L  L  C  C  F  A  D  P  G  Y  D  P  F  Q  E  G  D  L  C  G  H  *  R  E  T  *  V  C  *  F  Q  F  A  S  S  R  L  G  C  S  L  Y  S  L  G  F  G  F  G  *  F  L  S  W  P  *  E  I  V  S  Q  T  Y  V  H  I  *  *  *  S  R  F  I  G  A  L  F  P  Q  F  Q  R  A  C  S  C  M  L  *  R  F  W  D  *  W  T  C  Y  C  S  P  *  L  Q  :  A  N  *  S  A  *  S  D  *  V  *  G  I  *  R  *  S  G  L  D  F  L  L  P  *  E  Q  N  V  F  G  V  F  D  L  *  L  C  *  M  P  Y  R  L  *  G  I  G  E  A  S  N  Q  V  T  *  F  E  E  T  K  V  E  S  V  C  F  Y  Y  S  T  V  S  V  D  D  S  S  S  T  A  Y  Q  S  G  </second_frame>
            <third_frame>   A  *  N  L  D  *  *  *  R  T  V  F  F  F  H  L  L  Q  L  F  L  D  L  K  K  R  Y  F  I  T  S  R  G  G  L  F  N  I  F  V  Y  K  *  I  I  Q  F  R  F  Q  R  N  T  S  H  *  S  R  P  S  F  T  P  T  P  P  T  L  P  T  P  H  M  S  G  S  D  N  P  S  E  M  S  E  D  E  E  R  P  C  P  S  D  L  T  G  G  V  T  A  K  A  R  N  C  C  F  N  A  A  V  T  G  G  G  G  G  I  F  N  F  S  P  H  P  D  Q  V  L  E  N  V  L  E  N  V  L  C  F  L  T  D  R  R  D  R  N  A  A  S  L  V  S  K  S  W  Y  R  A  E  A  L  T  R  S  E  V  F  I  G  N  C  Y  A  V  S  P  T  R  V  T  T  R  F  K  R  V  T  S  V  A  I  K  G  K  P  R  F  A  D  F  S  L  L  P  P  D  W  G  A  H  F  T  P  W  A  S  V  L  G  D  S  Y  R  G  L  E  K  L  Y  L  K  R  M  S  I  S  D  D  D  L  G  L  L  A  R  C  F  P  N  F  K  E  L  V  L  V  C  C  E  G  F  G  T  S  G  L  A  I  V  A  R  D  C  R :   Q  I  R  V  L  D  L  I  E  S  E  V  S  D  D  E  V  D  W  I  S  Y  F  P  E  N  K  T  C  L  E  S  L  T  F  D  C  V  E  C  P  I  D  F  E  A  L  E  K  L  V  I  R  S  P  S  L  K  R  L  R  L  N  R  F  V  S  I  T  Q  L  Y  R  L  M  I  R  A  P  Q  L  T  N  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="161912" stop="161257"/>
                    <exon start="160879" stop="160624"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPSFTPTPPTLPTPHMSGSDNPSEMSEDEERPCPSDLTGGVTAKARNCCFNAAVTGGGGGIFNFSPHPDQVLENVLENVLCFLTDRRDRNAASLVSKSWYRAEALTRSEVFIGNCYAVSPTRVTTRFKRVTSVAIKGKPRFADFSLLPPDWGAHFTPWASVLGDSYRGLEKLYLKRMSISDDDLGLLARCFPNFKELVLVCCEGFGTSGLAIVARDCRQIRVLDLIESEVSDDEVDWISYFPENKTCLESLTFDCVECPIDFEALEKLVIRSPSLKRLRLNRFVSITQLYRLMIRAPQLTNLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="183616" PGL_stop="185460"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="183616" e_stop="183634"/>
            <exon e_start="184183" e_stop="184503"/>
            <exon e_start="184588" e_stop="184661"/>
            <exon e_start="184957" e_stop="185128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.919" acc_prob="0.000" e_score="0.579"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.978"/>
          <exon-intron don_prob="0.000" acc_prob="0.743" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.579">
            <gDNA_exon_boundary e_start="183616" e_stop="183634" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.919" acc_prob="0.000">
            <gDNA_intron_boundary i_start="183635" i_stop="184182" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="184183" e_stop="184503" e_length="321"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="184588" e_stop="184661" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.743">
            <gDNA_intron_boundary i_start="184662" i_stop="184956" i_length="295"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="184957" e_stop="185128" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183616" stop="183634"/>
              <exon start="184183" stop="184503"/>
              <exon start="184588" stop="184661"/>
              <exon start="184957" stop="185128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCATTCTCGTGCTTACT : TAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG : GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAG : AAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTT</gDNA_template>
            <first_frame> F  H  S  R  A  Y   : L  V  N  F  L  K  L  I  H  N  I  Y  K  V  *  K  K  R  K  S  V  *  L  G  S  *  E  V  K  I  K  M  E  F  D  D  D  Q  E  E  Q  E  Q  E  I  G  A  V  G  A  E  N  Y  V  T  T  G  N  N  S  G  R  E  E  G  I  S  T  S  S  I  G  R  K  S  N  V  R  Y  R  E  C  L  K  N  H  A  V  G  I  G  G  H  A  L  D  G  C  G  E  F  M  P  A  G  E  E   : G  T  M  D  A  L  K  C  A  A  C  N  C  H  R  N  F  H  R  K  E  A  E  G  E  :  K  D  W  G  G  V  C  K  S  K  M  R  H  *  C  S  S  F  V  Q  R  Q  M  S  R  D  M  F  S  K  F  G  C  T  T  T  S  T  L  L  V  K  N  P  K  T  K  N  F  A  *  F  C  F  F  T  F  </first_frame>
            <second_frame>  S  I  L  V  L  T  :  *  S  I  F  *  N  *  F  I  I  Y  I  K  C  E  R  K  E  K  V  C  S  *  V  V  E  K  *  K  L  R  W  N  L  M  M  T  K  K  S  R  N  K  K  L  A  L  W  E  R  K  I  M  *  R  R  G  T  I  V  E  E  K  K  G  F  P  L  V  V  L  V  E  K  V  M  L  G  I  E  S  V  *  R  I  T  R  S  A  *  V  A  T  P  W  M  G  V  A  N  L  C  R  P  V  K  K  :  V  L  W  M  H  L  N  V  R  R  V  I  A  I  G  I  S  T  V  R  K  R  K  V  R :   K  I  G  V  A  Y  A  K  A  R  *  G  I  S  A  A  V  L  C  R  D  K  C  Q  E  T  C  F  Q  S  L  D  A  Q  Q  Q  A  H  S  W  *  K  T  L  K  L  K  I  L  L  N  F  A  F  S  P  F </second_frame>
            <third_frame>   P  F  S  C  L  L :   S  Q  F  F  K  I  N  S  *  Y  I  *  S  V  K  E  K  K  K  C  V  V  R  *  L  R  S  E  N  *  D  G  I  *  *  *  P  R  R  A  G  T  R  N  W  R  C  G  S  G  K  L  C  N  D  G  E  Q  *  W  K  R  R  R  D  F  H  *  *  Y  W  *  K  K  *  C  *  V  *  R  V  F  E  E  S  R  G  R  H  R  W  P  R  P  G  W  V  W  R  I  Y  A  G  R  *  R  R :   Y  Y  G  C  T  *  M  C  G  V  *  L  P  *  E  F  P  P  *  G  S  G  R  *   : E  R  L  G  W  R  M  Q  K  Q  D  E  A  L  V  Q  Q  F  C  A  E  T  N  V  K  R  H  V  F  K  V  W  M  H  N  N  K  H  T  L  G  K  K  P  *  N  *  K  F  C  L  I  L  L  F  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="184260" stop="184503"/>
                    <exon start="184588" stop="184661"/>
                    <exon start="184957" stop="184998"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKIKMEFDDDQEEQEQEIGAVGAENYVTTGNNSGREEGISTSSIGRKSNVRYRECLKNHAVGIGGHALDGCGEFMPAGEEGTMDALKCAACNCHRNFHRKEAEGEKDWGGVCKSKMRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="183992" e_stop="184503"/>
            <exon e_start="184588" e_stop="185460"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.996"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="183992" e_stop="184503" e_length="512"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="184504" i_stop="184587" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="184588" e_stop="185460" e_length="873"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="183992" stop="184503"/>
              <exon start="184588" stop="185460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318587" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATGTCCACACCCTCTTCTTTCTCTTATCTTCTCTTCTGATCTTCATCTTTCTCATCACTAATCATTTTCCCCTTTCTCTGTTTTTTTTTCTTCTCTCACTATCAAAATTCTCTAAATATACAACAACCCCACTTTAGATCTATTTTTTTTCTTTAACTTGAGATGATGTAGATTTTTATTTTTTTGGAATAGTCAATTTTTTAAAATTAATTCATAATATATATAAAGTGTGAAAGAAAAGAAAAAGTGTGTAGTTAGGTAGTTGAGAAGTGAAAATTAAGATGGAATTTGATGATGACCAAGAAGAGCAGGAACAAGAAATTGGCGCTGTGGGAGCGGAAAATTATGTAACGACGGGGAACAATAGTGGAAGAGAAGAAGGGATTTCCACTAGTAGTATTGGTAGAAAAAGTAATGTTAGGTATAGAGAGTGTTTGAAGAATCACGCGGTCGGCATAGGTGGCCACGCCCTGGATGGGTGTGGCGAATTTATGCCGGCCGGTGAAGAAG : GTACTATGGATGCACTTAAATGTGCGGCGTGTAATTGCCATAGGAATTTCCACCGTAAGGAAGCGGAAGGTGAGGTATTTCATCATACCCCACCTCCCCACCTTACTCATCACCACCATCACCATCCCCAATTTTCACCTTTTTCTTCTTATCGAATCACCCACCATCCATCTGGTTACCTACATGTTAACCCACCCCCACATCAGCGCCCTTTGGCGCTGCCATCTACTTCTAGGGACGACGAAGATATGTCGAACCCTAGTAGTAGTGGGGGTGGGGGTGGAGGGAGTGGTGGGGTGGGTGGTTCAAGAAAGAGGTTTAGGACAAAGTTCACAGGAGACCAAAAGGATAAAATGTTGGCATTTGCAGAAAGATTGGGGTGGCGTATGCAAAAGCAAGATGAGGCATTAGTGCAGCAGTTTTGTGCAGAGACAAATGTCAAGAGACATGTTTTCAAAGTTTGGATGCACAACAACAAGCACACTCTTGGTAAAAAACCCTAAAACTAAAAATTTTGCTTAATTTTGCTTTTTCACCTTTTTATAAGGTAAAAAAAAGTAAATCAAAGCATATGTAGTATCTATTTGATGGAGCTAGCTAGGAGGGAAAAAAAATTGGAACAAGGAAGCTAGTTTTAATTAATTAGATCATCATTAAGCCAAGGATTTGTTGTAAGAGAGTACTATTATTATGATTATTATTAACATTTTGATGATAAGTAACTTGTTTAGGGTTGCTAGTTACAAGTACGTACTAGCTAGACATTGTTAGTGAGTCAGTCGGTCACCTTTGGTACTTTCTTTATTTAAATTATTTTCTTCCATCTGAATATTTTTACGTGTTATTGGACGATATCTTATGCAATATTGATGA</gDNA_template>
            <first_frame> *  C  P  H  P  L  L  S  L  I  F  S  S  D  L  H  L  S  H  H  *  S  F  S  P  F  S  V  F  F  S  S  L  T  I  K  I  L  *  I  Y  N  N  P  T  L  D  L  F  F  F  F  N  L  R  *  C  R  F  L  F  F  W  N  S  Q  F  F  K  I  N  S  *  Y  I  *  S  V  K  E  K  K  K  C  V  V  R  *  L  R  S  E  N  *  D  G  I  *  *  *  P  R  R  A  G  T  R  N  W  R  C  G  S  G  K  L  C  N  D  G  E  Q  *  W  K  R  R  R  D  F  H  *  *  Y  W  *  K  K  *  C  *  V  *  R  V  F  E  E  S  R  G  R  H  R  W  P  R  P  G  W  V  W  R  I  Y  A  G  R  *  R  R :   Y  Y  G  C  T  *  M  C  G  V  *  L  P  *  E  F  P  P  *  G  S  G  R  *  G  I  S  S  Y  P  T  S  P  P  Y  S  S  P  P  S  P  S  P  I  F  T  F  F  F  L  S  N  H  P  P  S  I  W  L  P  T  C  *  P  T  P  T  S  A  P  F  G  A  A  I  Y  F  *  G  R  R  R  Y  V  E  P  *  *  *  W  G  W  G  W  R  E  W  W  G  G  W  F  K  K  E  V  *  D  K  V  H  R  R  P  K  G  *  N  V  G  I  C  R  K  I  G  V  A  Y  A  K  A  R  *  G  I  S  A  A  V  L  C  R  D  K  C  Q  E  T  C  F  Q  S  L  D  A  Q  Q  Q  A  H  S  W  *  K  T  L  K  L  K  I  L  L  N  F  A  F  S  P  F  Y  K  V  K  K  S  K  S  K  H  M  *  Y  L  F  D  G  A  S  *  E  G  K  K  I  G  T  R  K  L  V  L  I  N  *  I  I  I  K  P  R  I  C  C  K  R  V  L  L  L  *  L  L  L  T  F  *  *  *  V  T  C  L  G  L  L  V  T  S  T  Y  *  L  D  I  V  S  E  S  V  G  H  L  W  Y  F  L  Y  L  N  Y  F  L  P  S  E  Y  F  Y  V  L  L  D  D  I  L  C  N  I  D   </first_frame>
            <second_frame>  D  V  H  T  L  F  F  L  L  S  S  L  L  I  F  I  F  L  I  T  N  H  F  P  L  S  L  F  F  F  L  L  S  L  S  K  F  S  K  Y  T  T  T  P  L  *  I  Y  F  F  S  L  T  *  D  D  V  D  F  Y  F  F  G  I  V  N  F  L  K  L  I  H  N  I  Y  K  V  *  K  K  R  K  S  V  *  L  G  S  *  E  V  K  I  K  M  E  F  D  D  D  Q  E  E  Q  E  Q  E  I  G  A  V  G  A  E  N  Y  V  T  T  G  N  N  S  G  R  E  E  G  I  S  T  S  S  I  G  R  K  S  N  V  R  Y  R  E  C  L  K  N  H  A  V  G  I  G  G  H  A  L  D  G  C  G  E  F  M  P  A  G  E  E   : G  T  M  D  A  L  K  C  A  A  C  N  C  H  R  N  F  H  R  K  E  A  E  G  E  V  F  H  H  T  P  P  P  H  L  T  H  H  H  H  H  H  P  Q  F  S  P  F  S  S  Y  R  I  T  H  H  P  S  G  Y  L  H  V  N  P  P  P  H  Q  R  P  L  A  L  P  S  T  S  R  D  D  E  D  M  S  N  P  S  S  S  G  G  G  G  G  G  S  G  G  V  G  G  S  R  K  R  F  R  T  K  F  T  G  D  Q  K  D  K  M  L  A  F  A  E  R  L  G  W  R  M  Q  K  Q  D  E  A  L  V  Q  Q  F  C  A  E  T  N  V  K  R  H  V  F  K  V  W  M  H  N  N  K  H  T  L  G  K  K  P  *  N  *  K  F  C  L  I  L  L  F  H  L  F  I  R  *  K  K  V  N  Q  S  I  C  S  I  Y  L  M  E  L  A  R  R  E  K  K  L  E  Q  G  S  *  F  *  L  I  R  S  S  L  S  Q  G  F  V  V  R  E  Y  Y  Y  Y  D  Y  Y  *  H  F  D  D  K  *  L  V  *  G  C  *  L  Q  V  R  T  S  *  T  L  L  V  S  Q  S  V  T  F  G  T  F  F  I  *  I  I  F  F  H  L  N  I  F  T  C  Y  W  T  I  S  Y  A  I  L  M  </second_frame>
            <third_frame>   M  S  T  P  S  S  F  S  Y  L  L  F  *  S  S  S  F  S  S  L  I  I  F  P  F  L  C  F  F  F  F  S  H  Y  Q  N  S  L  N  I  Q  Q  P  H  F  R  S  I  F  F  L  *  L  E  M  M  *  I  F  I  F  L  E  *  S  I  F  *  N  *  F  I  I  Y  I  K  C  E  R  K  E  K  V  C  S  *  V  V  E  K  *  K  L  R  W  N  L  M  M  T  K  K  S  R  N  K  K  L  A  L  W  E  R  K  I  M  *  R  R  G  T  I  V  E  E  K  K  G  F  P  L  V  V  L  V  E  K  V  M  L  G  I  E  S  V  *  R  I  T  R  S  A  *  V  A  T  P  W  M  G  V  A  N  L  C  R  P  V  K  K  :  V  L  W  M  H  L  N  V  R  R  V  I  A  I  G  I  S  T  V  R  K  R  K  V  R  Y  F  I  I  P  H  L  P  T  L  L  I  T  T  I  T  I  P  N  F  H  L  F  L  L  I  E  S  P  T  I  H  L  V  T  Y  M  L  T  H  P  H  I  S  A  L  W  R  C  H  L  L  L  G  T  T  K  I  C  R  T  L  V  V  V  G  V  G  V  E  G  V  V  G  W  V  V  Q  E  R  G  L  G  Q  S  S  Q  E  T  K  R  I  K  C  W  H  L  Q  K  D  W  G  G  V  C  K  S  K  M  R  H  *  C  S  S  F  V  Q  R  Q  M  S  R  D  M  F  S  K  F  G  C  T  T  T  S  T  L  L  V  K  N  P  K  T  K  N  F  A  *  F  C  F  F  T  F  L  *  G  K  K  K  *  I  K  A  Y  V  V  S  I  *  W  S  *  L  G  G  K  K  N  W  N  K  E  A  S  F  N  *  L  D  H  H  *  A  K  D  L  L  *  E  S  T  I  I  M  I  I  I  N  I  L  M  I  S  N  L  F  R  V  A  S  Y  K  Y  V  L  A  R  H  C  *  *  V  S  R  S  P  L  V  L  S  L  F  K  L  F  S  S  I  *  I  F  L  R  V  I  G  R  Y  L  M  Q  Y  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0049I21.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="184260" stop="184503"/>
                    <exon start="184588" stop="185090"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVKIKMEFDDDQEEQEQEIGAVGAENYVTTGNNSGREEGISTSSIGRKSNVRYRECLKNHAVGIGGHALDGCGEFMPAGEEGTMDALKCAACNCHRNFHRKEAEGEVFHHTPPPHLTHHHHHHPQFSPFSSYRITHHPSGYLHVNPPPHQRPLALPSTSRDDEDMSNPSSSGGGGGGSGGVGGSRKRFRTKFTGDQKDKMLAFAERLGWRMQKQDEALVQQFCAETNVKRHVFKVWMHNNKHTLGKKP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 70 chains have been computed
$ 
$ memory statistics:
$ 691392 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 38410 bytes was the average size of a spliced alignment
$ 22848 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1523 bytes was the average size of a predicted gene location
$ 17 megabytes was the average size of the backtrace matrix
$ 101 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 15:03:37
-->
